Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 201 of 332
Found at i:66732207 original size:25 final size:25
Alignment explanation
Indices: 66732164--66732220 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 25
66732154 CCGCTAACTT
66732164 TAGCTTTAGATCAAGGTTGCTAACAC
1 TAGC-TTAGATCAAGGTTGCTAACAC
* *
66732190 TAGCTTAGTTCAATGTTGCTAACAC
1 TAGCTTAGATCAAGGTTGCTAACAC
66732215 TAGCTT
1 TAGCTT
66732221 CAGAGAATCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (25 bp):
TAGCTTAGATCAAGGTTGCTAACAC
Found at i:66743042 original size:50 final size:50
Alignment explanation
Indices: 66742927--66743025 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 50
66742917 GTATCATTCT
*
66742927 ACCAATGAATACACCTATGTCTCTACTCGTGGATTCAACTACTTTGATAC
1 ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTACTTTGATAC
*
66742977 ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTGCTTTGATA
1 ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTACTTTGATA
66743026 GCCAAGACTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (50 bp):
ACCAATGAATACATCTATGTCTCTACTCGTGGATTCAACTACTTTGATAC
Found at i:66746256 original size:20 final size:20
Alignment explanation
Indices: 66746231--66746274 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
66746221 CTCTTTTGAA
*
66746231 TCTTTTTC-CTTTTTTTCTTC
1 TCTTTTTCTCCTTTTTT-TTC
66746251 TCTTTTTCTCCTTTTTTTTC
1 TCTTTTTCTCCTTTTTTTTC
66746271 TCTT
1 TCTT
66746275 CTTTTTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (20 bp):
TCTTTTTCTCCTTTTTTTTC
Found at i:66746265 original size:22 final size:22
Alignment explanation
Indices: 66746233--66746285 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 22
66746223 CTTTTGAATC
66746233 TTTTTCC-TTTTTTTCT-TCTCT
1 TTTTTCCTTTTTTTTCTCT-TCT
66746254 TTTTCTCCTTTTTTTTCTCTTCT
1 TTTT-TCCTTTTTTTTCTCTTCT
66746277 TTTTTCCTT
1 TTTTTCCTT
66746286 AACTCTAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.14
22 8 0.28
23 16 0.55
24 1 0.03
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTCCTTTTTTTTCTCTTCT
Found at i:66746279 original size:11 final size:11
Alignment explanation
Indices: 66746231--66746280 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
66746221 CTCTTTTGAA
66746231 TCTTTTTC-CT
1 TCTTTTTCTCT
66746241 T-TTTTTCT-T
1 TCTTTTTCTCT
66746250 CTCTTTTTCTCCT
1 -TCTTTTTCT-CT
*
66746263 TTTTTTTCTCT
1 TCTTTTTCTCT
66746274 TCTTTTT
1 TCTTTTT
66746281 TCCTTAACTC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
9 7 0.21
10 2 0.06
11 15 0.45
12 8 0.24
13 1 0.03
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
TCTTTTTCTCT
Found at i:66755222 original size:3 final size:3
Alignment explanation
Indices: 66755214--66755240 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
66755204 ATTGTAAGAT
66755214 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
66755241 CCTTTTTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:66755936 original size:5 final size:5
Alignment explanation
Indices: 66755914--66755960 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
66755904 AGAAGACCAG
*
66755914 CTTTT CTTCTT CTTTT CTGTT CTTTT CTTTT CTTTT -TTTT -TTTT CTT
1 CTTTT CTT-TT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTT
66755961 GTGGGCGGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 8 0.21
5 25 0.66
6 5 0.13
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (5 bp):
CTTTT
Found at i:66756068 original size:14 final size:15
Alignment explanation
Indices: 66756036--66756069 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
66756026 AGATTGTCTG
*
66756036 CTTTTTTTTTTACAT
1 CTTTTTTTTTTACAC
66756051 CTTTTTTTTTTAC-C
1 CTTTTTTTTTTACAC
66756065 CTTTT
1 CTTTT
66756070 GTTTGATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.74
Consensus pattern (15 bp):
CTTTTTTTTTTACAC
Found at i:66761686 original size:23 final size:23
Alignment explanation
Indices: 66761660--66761705 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
66761650 GAAACTTTTG
*
66761660 GTCCAGTAGTAAAAGTCGTAAAA
1 GTCCAGTAATAAAAGTCGTAAAA
* *
66761683 GTCCAGTAATAAAATTTGTAAAA
1 GTCCAGTAATAAAAGTCGTAAAA
66761706 CACTTCCTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (23 bp):
GTCCAGTAATAAAAGTCGTAAAA
Found at i:66770302 original size:47 final size:47
Alignment explanation
Indices: 66770226--66770341 Score: 160
Period size: 47 Copynumber: 2.5 Consensus size: 47
66770216 CTTCGGGACT
* * * *
66770226 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
66770273 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
66770320 TATCACATATATACACTTTCAC
1 TATCACATATATACACTTTCAC
66770342 CTTTATTCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:66777328 original size:15 final size:15
Alignment explanation
Indices: 66777305--66777345 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
66777295 TTTAAAAATT
*
66777305 TGAAA-TTAGCTTGA
1 TGAAATTTAGCATGA
66777319 TGAAATTTAGCATGA
1 TGAAATTTAGCATGA
*
66777334 CGAAATTTAGCA
1 TGAAATTTAGCA
66777346 AAATGTGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.32
Consensus pattern (15 bp):
TGAAATTTAGCATGA
Found at i:66783973 original size:16 final size:16
Alignment explanation
Indices: 66783952--66783985 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
66783942 ACAATGCTTA
*
66783952 GTAAGTTTTAAGTAGT
1 GTAAGTTTTAAGCAGT
66783968 GTAAGTTTTAAGCAGT
1 GTAAGTTTTAAGCAGT
66783984 GT
1 GT
66783986 CAACAGATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.41
Consensus pattern (16 bp):
GTAAGTTTTAAGCAGT
Found at i:66784677 original size:46 final size:46
Alignment explanation
Indices: 66784609--66784735 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
66784599 TATATATACA
** * *
66784609 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
66784655 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
66784701 CAACTCATACACGTTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
66784736 CGCCACATAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:66784777 original size:47 final size:46
Alignment explanation
Indices: 66784719--66784905 Score: 250
Period size: 47 Copynumber: 4.0 Consensus size: 46
66784709 ACACGTTTCG
* ** * * *
66784719 CATTAGCCATTCGGCTTCGCCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCTT-ATCACATATATGCA-TGTTCACATTCATCA
**
66784766 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTC-GGCTTATCACATATATGCATGTTCACATTCATCA
66784813 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGG-CTTATCACATATATGCATGTTCACATTCATCA
66784860 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
1 CATTGGCCATTCGG-CTTATCACATATATGCATGTTCACATTCATC
66784906 TCATAAAATC
Statistics
Matches: 127, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 123 0.97
48 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (46 bp):
CATTGGCCATTCGGCTTATCACATATATGCATGTTCACATTCATCA
Found at i:66784837 original size:22 final size:22
Alignment explanation
Indices: 66784809--66784884 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
66784799 GTTCACATTC
66784809 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
66784831 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
66784855 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
66784878 ATCACAT
1 ATCACAT
66784885 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:66790273 original size:27 final size:27
Alignment explanation
Indices: 66790259--66790386 Score: 193
Period size: 27 Copynumber: 4.7 Consensus size: 27
66790249 AACTGTATTA
66790259 CCCCTGTAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * **
66790286 CCCTTATAGGGTAAAATGACTATAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
66790313 CCCTTGTAGGGTAAAATGACCGTAATA
1 CCCCTGTAGGGTAAAATGACCGTAATG
66790340 CCCCTGTAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
66790367 TCCCTGTAGGGTAAAATGAC
1 CCCCTGTAGGGTAAAATGAC
66790387 AATTATGCCA
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAATGACCGTAATG
Found at i:66790301 original size:54 final size:54
Alignment explanation
Indices: 66790243--66790386 Score: 198
Period size: 54 Copynumber: 2.7 Consensus size: 54
66790233 CTTTGATTTA
* * * * *
66790243 TAAAATAACTGTATTACCCCTGTAGGGTAAAATGACCGTAATGCCCTTATAGGG
1 TAAAATGACTGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGG
* * *
66790297 TAAAATGACTATAATGCCCTTGTAGGGTAAAATGACCGTAATACCCCTGTAGGG
1 TAAAATGACTGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGG
* *
66790351 TAAAATGACCGTAATGTCCCTGTAGGGTAAAATGAC
1 TAAAATGACTGTAATGCCCCTGTAGGGTAAAATGAC
66790387 AATTATGCCA
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (54 bp):
TAAAATGACTGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGG
Found at i:66790329 original size:81 final size:81
Alignment explanation
Indices: 66790243--66790400 Score: 237
Period size: 81 Copynumber: 2.0 Consensus size: 81
66790233 CTTTGATTTA
* * *
66790243 TAAAATAACTGTATTACCCCTGTAGGGTAAAATGACCGTAATG-CCCTTATAGGGTAAAATGACT
1 TAAAATAACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGTCCC-TATAGGGTAAAATGACA
*
66790307 ATAATGCCCTTGTAGGG
65 ATAATGCCATTGTAGGG
* *
66790324 TAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGTCCCTGTAGGGTAAAATGACAA
1 TAAAATAACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGTCCCTATAGGGTAAAATGACAA
*
66790389 TTATGCCATTGT
66 TAATGCCATTGT
66790401 GTTCTGTATG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 66 0.96
82 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (81 bp):
TAAAATAACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGTCCCTATAGGGTAAAATGACAA
TAATGCCATTGTAGGG
Found at i:66793359 original size:47 final size:47
Alignment explanation
Indices: 66793290--66793889 Score: 939
Period size: 47 Copynumber: 12.6 Consensus size: 47
66793280 AGTATATGTG
*
66793290 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
66793339 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
66793386 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
66793435 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
66793482 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
66793529 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
66793576 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
66793625 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
66793672 GAATGTGAAAGTGTATTTATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
66793719 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
66793768 GAATGTGAAGGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
66793815 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
66793862 GGACGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
66793890 TCCCGAAGGG
Statistics
Matches: 513, Mismatches: 32, Indels: 14
0.92 0.06 0.03
Matches are distributed among these distances:
47 368 0.72
49 145 0.28
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:66793543 original size:143 final size:141
Alignment explanation
Indices: 66793290--66793889 Score: 939
Period size: 143 Copynumber: 4.2 Consensus size: 141
66793280 AGTATATGTG
*
66793290 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
66793355 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCG
*
66793420 AATGGCCGATGTGAT
127 AATGGCCAATGTGAT
*
66793435 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
66793500 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
66793565 GCCGATGTGAT
131 GCCAATGTGAT
*
66793576 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
66793641 ATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATTTATGTGATAAGGCCGAA
64 ATATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
66793706 TGGCCAATGTGAT
129 TGGCCAATGTGAT
*
66793719 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
66793784 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
64 ATATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
*
66793849 TGGCCAACGTGAT
129 TGGCCAATGTGAT
* * *
66793862 GGACGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
66793890 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 23, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
141 59 0.14
143 358 0.84
145 11 0.03
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (141 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGAT
Found at i:66793615 original size:190 final size:190
Alignment explanation
Indices: 66793290--66793889 Score: 988
Period size: 190 Copynumber: 3.1 Consensus size: 190
66793280 AGTATATGTG
* *
66793290 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAG--TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTAT
66793355 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* *
66793420 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
129 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
66793482 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
66793547 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66793612 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
* *
66793672 GAATGTGAAAGTGTATTTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
66793737 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* * * * * *
66793800 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
129 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
* * *
66793862 GGACGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
66793890 TCCCGAAGGG
Statistics
Matches: 386, Mismatches: 20, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
190 332 0.86
191 3 0.01
192 51 0.13
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
Found at i:66803476 original size:43 final size:43
Alignment explanation
Indices: 66803386--66803489 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 43
66803376 GTGGTTACGT
* * * ** **
66803386 GTAAGACCATGTTTGGGACATTGGCATCGTTATATGATTTCGT
1 GTAAGACCATGTCTGGGACATTGACATCGATATATGATAACAC
* *
66803429 GTAAGACCATGTCTGGGACATTGATATCGATATGTGATAACAC
1 GTAAGACCATGTCTGGGACATTGACATCGATATATGATAACAC
*
66803472 GTAAGACCATATCTGGGA
1 GTAAGACCATGTCTGGGA
66803490 TATGGCATTG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACATTGACATCGATATATGATAACAC
Found at i:66814583 original size:53 final size:53
Alignment explanation
Indices: 66814400--66814607 Score: 182
Period size: 53 Copynumber: 3.9 Consensus size: 53
66814390 CATTAGGGTT
* * * * * *
66814400 TAAGGATACCAAGTAAGACCATACCAAGGCATGGCATTGGTAAGTTTTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGG
* * * * * * ** *
66814454 CAATGAAATCATGTAAGACCATGTCAAGACATGGCATTAATAAATTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT-C-ATAAGG
* * * * *
66814509 GAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
* * *
66814562 TAAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
66814608 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 46 0.39
54 34 0.29
55 39 0.33
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
Found at i:66820922 original size:24 final size:24
Alignment explanation
Indices: 66820864--66820912 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
66820854 TCAAATACAT
66820864 AGAAGAACAAAACATAGCCAAGCA
1 AGAAGAACAAAACATAGCCAAGCA
*
66820888 AGAAGAACAAAACATAGCTAAGCA
1 AGAAGAACAAAACATAGCCAAGCA
66820912 A
1 A
66820913 TTAGTTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.59, C:0.18, G:0.16, T:0.06
Consensus pattern (24 bp):
AGAAGAACAAAACATAGCCAAGCA
Found at i:66825480 original size:40 final size:40
Alignment explanation
Indices: 66825425--66825688 Score: 474
Period size: 40 Copynumber: 6.6 Consensus size: 40
66825415 AACATTGGAT
66825425 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
66825465 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
66825505 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
66825545 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
66825585 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
66825625 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
66825665 TATGTCCGGGTTAAGACCCGAAGG
1 TATATCCGGGCTAAGACCCGAAGG
66825689 TAAATGTGTT
Statistics
Matches: 214, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:66828987 original size:47 final size:47
Alignment explanation
Indices: 66828916--66829706 Score: 1168
Period size: 47 Copynumber: 16.6 Consensus size: 47
66828906 CCCTTCGGGA
* * * * * * *
66828916 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66828963 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66829010 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66829057 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66829106 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66829153 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66829200 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66829249 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66829298 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66829345 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
66829392 CTTATCACATATATATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
66829441 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66829488 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66829535 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66829584 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66829631 CTTATCACATATATACACTTCCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66829678 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
66829707 TATTCAAATA
Statistics
Matches: 686, Mismatches: 48, Indels: 18
0.91 0.06 0.02
Matches are distributed among these distances:
47 445 0.65
49 241 0.35
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66828994 original size:25 final size:25
Alignment explanation
Indices: 66828966--66829044 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
66828956 ACTCGTCCCT
66828966 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
66828991 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
66829013 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
66829038 ATCACAT
1 ATCACAT
66829045 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:66829113 original size:96 final size:94
Alignment explanation
Indices: 66828916--66829706 Score: 1204
Period size: 96 Copynumber: 8.3 Consensus size: 94
66828906 CCCTTCGGGA
* * * * * * * *
66828916 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGTCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
66828981 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
66829010 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
66829075 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
*
66829106 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
66829171 TTCCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
* *
66829200 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
66829265 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATTGGCCATTCGGC
*
66829298 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
66829363 TTCCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
66829392 CTTATCACATATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
66829457 ACTTTCACATTCATCACATTGGCCATTCGAC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
66829488 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
66829553 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
*
66829584 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * * *
66829649 TTCCACATTCATCACATCGACCATTAGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
66829678 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
66829707 TATTCAAATA
Statistics
Matches: 638, Mismatches: 47, Indels: 22
0.90 0.07 0.03
Matches are distributed among these distances:
94 219 0.34
96 375 0.59
98 44 0.07
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGC
Found at i:66829185 original size:143 final size:142
Alignment explanation
Indices: 66828916--66829706 Score: 1244
Period size: 143 Copynumber: 5.5 Consensus size: 142
66828906 CCCTTCGGGA
* * * * * * * *
66828916 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGTCCCTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
66828980 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
66829045 CGGCCATTAGGC
131 CGGCCATTAGGC
* *
66829057 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
* * * *
66829121 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTCCACATTCATCAC
64 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
66829186 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
* *
66829200 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
66829265 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
63 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
*
66829330 CATCGGCTATTAGGC
128 CATCGGCCATTAGGC
*
66829345 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* * * *
66829410 ACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
66829475 TTGGCCATTCGAC
130 TCGGCCATTAGGC
66829488 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
66829553 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
66829618 TCGGCTATTAGGC
130 TCGGCCATTAGGC
* *
66829631 CTTATCACATATATACACTTCCACATTCATCACATCGACCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
66829696 ACTTTCACATT
65 ACTTTCACATT
66829707 TATTCAAATA
Statistics
Matches: 609, Mismatches: 37, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
141 8 0.01
143 512 0.84
145 89 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:66829472 original size:25 final size:25
Alignment explanation
Indices: 66829444--66829522 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
66829434 ACTCGGCCCT
66829444 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
66829469 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATACACTTTC-ACATTC
66829491 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
66829516 ATCACAT
1 ATCACAT
66829523 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:66833772 original size:40 final size:40
Alignment explanation
Indices: 66833740--66834290 Score: 915
Period size: 40 Copynumber: 13.8 Consensus size: 40
66833730 CCAGCATGAT
* * *
66833740 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
66833780 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
66833820 TGCTCTTCGAGACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
66833859 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
66833899 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66833939 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66833979 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
66834019 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
66834059 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
66834099 TGCTCTTCAAGACTTAGCCCGGATACATCACTGGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66834139 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66834179 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
66834219 TGCTCTTCGGGACTTAGCCCGGAAACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66834259 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
66834291 CTCAATTCTC
Statistics
Matches: 479, Mismatches: 31, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
39 36 0.08
40 443 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:66835818 original size:47 final size:47
Alignment explanation
Indices: 66835747--66836106 Score: 549
Period size: 47 Copynumber: 7.6 Consensus size: 47
66835737 CCCTTCGGGA
* * * *
66835747 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66835794 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66835841 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
66835888 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66835935 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
66835984 CTTATCACATATTTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
66836031 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66836078 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
66836107 TATTCAAATA
Statistics
Matches: 289, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 227 0.79
49 62 0.21
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:66835850 original size:22 final size:22
Alignment explanation
Indices: 66835822--66835897 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
66835812 TTTCACATTC
66835822 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
66835844 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
66835868 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
66835891 ATCACAT
1 ATCACAT
66835898 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:66836003 original size:143 final size:143
Alignment explanation
Indices: 66835747--66836106 Score: 589
Period size: 143 Copynumber: 2.5 Consensus size: 143
66835737 CCCTTCGGGA
* * * * * * *
66835747 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
66835810 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
66835875 TTGGCCATTCGGC
131 TCGGCCATTAGGC
*
66835888 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
66835953 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATTTACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
66836018 TCGGCTATTAGGC
131 TCGGCCATTAGGC
*
66836031 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
66836096 ACTTTCACATT
66 ACTTTCACATT
66836107 TATTCAAATA
Statistics
Matches: 203, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 47 0.23
143 156 0.77
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:66848380 original size:41 final size:41
Alignment explanation
Indices: 66848335--66848416 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
66848325 GTTCGAGTGT
66848335 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
1 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
66848376 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
1 AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
66848417 TGACTTCCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (41 bp):
AAGTGGTTCTTCAATTGAAAATTTGGGTTGCACAAATTCTC
Found at i:66849935 original size:18 final size:17
Alignment explanation
Indices: 66849909--66849942 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
66849899 CCACAATACG
66849909 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
66849927 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
66849943 AAGCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:66862299 original size:22 final size:22
Alignment explanation
Indices: 66862274--66862322 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
66862264 CTAAGAGAGT
*
66862274 TGAGAGAGGAGA-GAATGATGAA
1 TGAGAGAGG-GATGAATGATAAA
* *
66862296 TGAGTGAGGGATGACTGATAAA
1 TGAGAGAGGGATGAATGATAAA
66862318 TGAGA
1 TGAGA
66862323 AATGGGGTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.41, C:0.02, G:0.39, T:0.18
Consensus pattern (22 bp):
TGAGAGAGGGATGAATGATAAA
Found at i:66879780 original size:191 final size:191
Alignment explanation
Indices: 66879456--66879838 Score: 667
Period size: 191 Copynumber: 2.0 Consensus size: 191
66879446 GGCCCTCTTC
66879456 TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
1 TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
*
66879521 TAAAGTTAAGTGGATGTTCATGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
66 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
* *
66879586 GGAAAGTGAGAATCCATAAGAATGATAAATCATCTAGCATCCACCAAAATTAGTTGAATGG
131 GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATCCACCAAAATTAGTTGAATGG
* * * * **
66879647 TAGTAGTCCTTTTGAGTAGAATGTCAGTTTATCTACTAGAGCTATGATGTGTTTACGAGTTAGGA
1 TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
66879712 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
66 TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
* *
66879777 GGAAAGTGAGGATCCATAAGAAGGATAAAACATCTAGCATTCACCAAAATTAGTTGAATGG
131 GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATCCACCAAAATTAGTTGAATGG
66879838 T
1 T
66879839 CATAAGCTCA
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
191 181 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (191 bp):
TAGTAGTCCTTATGAGTAAAATGTCAGTTTATCTACCAGAGATATGACATGTTTACGAGTTAGGA
TAAAGTTAAGTGGATGTTCAAGATAGGAAGTGTGAAGAAAAAGGAACATAAGATAATATGTGCAA
GGAAAGTGAGAATCCATAAGAAGGATAAAACATCTAGCATCCACCAAAATTAGTTGAATGG
Found at i:66883185 original size:29 final size:29
Alignment explanation
Indices: 66883135--66883190 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
66883125 CCACACTTAC
* *
66883135 TATTACTGGCAGCTACGTTGCGTTATTAT
1 TATTACTGGCAGCTACGCTGCGATATTAT
*
66883164 TATTACTGGCAGCCT-TGCTGCGATATT
1 TATTACTGGCAG-CTACGCTGCGATATT
66883191 GGTGTGCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (29 bp):
TATTACTGGCAGCTACGCTGCGATATTAT
Found at i:66885158 original size:23 final size:23
Alignment explanation
Indices: 66885106--66885218 Score: 86
Period size: 23 Copynumber: 4.8 Consensus size: 23
66885096 GCCATGACCG
* *
66885106 GTAAGCTCCTCTTGAGCTGATGAACA
1 GTAAGCT-CTATTGAGCTGA--AATA
*
66885132 GTAAGCTCTATTGAGCTGAAATG
1 GTAAGCTCTATTGAGCTGAAATA
* * *
66885155 GTAAGCTTTATCGAGCTG-AACA
1 GTAAGCTCTATTGAGCTGAAATA
* *
66885177 GTAAGCTC-ATACGAGCTGGAATA
1 GTAAGCTCTAT-TGAGCTGAAATA
* *
66885200 GTAAGCTCCAATGAGCTGA
1 GTAAGCTCTATTGAGCTGA
66885219 TAAATAAGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
21 2 0.03
22 16 0.22
23 35 0.49
24 1 0.01
25 11 0.15
26 7 0.10
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAATA
Found at i:66885216 original size:45 final size:45
Alignment explanation
Indices: 66885126--66885218 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
66885116 CTTGAGCTGA
* * **
66885126 TGAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCTTTATCGAGC
1 TGAACAGTAAGCTCTATCGAGCTGAAATAGTAAGCTCAATCGAGC
*
66885171 TGAACAGTAAGCTC-ATACGAGCTGGAATAGTAAGCTCCAAT-GAGC
1 TGAACAGTAAGCTCTAT-CGAGCTGAAATAGTAAGCT-CAATCGAGC
66885216 TGA
1 TGA
66885219 TAAATAAGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
44 2 0.05
45 37 0.90
46 2 0.05
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATCGAGCTGAAATAGTAAGCTCAATCGAGC
Found at i:66896786 original size:21 final size:21
Alignment explanation
Indices: 66896760--66896802 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
66896750 CCGAAATTGC
66896760 ATTCGACTAGGCTTGGGTAAT
1 ATTCGACTAGGCTTGGGTAAT
66896781 ATTCGACTAGGCTTGGGTAAT
1 ATTCGACTAGGCTTGGGTAAT
66896802 A
1 A
66896803 AGAAAATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.33
Consensus pattern (21 bp):
ATTCGACTAGGCTTGGGTAAT
Found at i:66907658 original size:37 final size:37
Alignment explanation
Indices: 66907608--66907686 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66907598 TTATTATGAA
* * *
66907608 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
66907645 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
66907682 GTCTT
1 GTCTT
66907687 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:66907883 original size:47 final size:47
Alignment explanation
Indices: 66907805--66908258 Score: 633
Period size: 47 Copynumber: 9.7 Consensus size: 47
66907795 CCCTTCGGGA
* * * * * *
66907805 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66907852 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66907899 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66907946 CTTATCACATATATACACTTTCATATTCATCACATCGG-C--T----
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66907986 C--A-CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66908030 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66908079 CTTATCACATATATATACACTTTCACATTCATCGCATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66908128 CTTATCACATATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66908177 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66908224 CTTATCTCATATATACA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
66908259 AGAATCCTAA
Statistics
Matches: 374, Mismatches: 20, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
37 31 0.08
38 2 0.01
40 2 0.01
44 2 0.01
46 3 0.01
47 192 0.51
49 142 0.38
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66908041 original size:49 final size:49
Alignment explanation
Indices: 66907985--66908258 Score: 459
Period size: 49 Copynumber: 5.7 Consensus size: 49
66907975 TCACATCGGC
66907985 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66908034 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
66908083 TCACATATATATACACTTTCACATTCATCGCATCGACCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
66908132 TCACATATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66908181 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
66908228 TCTC--ATATATACA-TGTTCACATCCATCACAT
1 TCACATATATATACACT-TTCACATTCATCACAT
66908259 AGAATCCTAA
Statistics
Matches: 218, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 69 0.32
49 148 0.68
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:66910986 original size:20 final size:21
Alignment explanation
Indices: 66910961--66911005 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
66910951 TCACTTAACA
66910961 AAACTTGTATAA-CTATCATC
1 AAACTTGTATAATCTATCATC
* *
66910981 AAACTTTTATAATCTATCATT
1 AAACTTGTATAATCTATCATC
66911002 AAAC
1 AAAC
66911006 ATCAAAGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (21 bp):
AAACTTGTATAATCTATCATC
Found at i:66914052 original size:45 final size:44
Alignment explanation
Indices: 66913988--66914105 Score: 139
Period size: 45 Copynumber: 2.6 Consensus size: 44
66913978 CGAAAGCTAG
* *
66913988 TGTAAGACAGGTCTGGGACATGCATCAGCCT-CGAGATGTAATCTA
1 TGTAAGACATGTCTGGGACATGCATC-GCCTACGAGATGT-ATCAA
* * * *
66914033 TGTAAGACATGTATGGGACATGCATCGGCTATGAGATGTGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTATCAA
66914077 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
66914106 ACATTACACC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 13 0.21
45 44 0.70
46 6 0.10
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTATCAA
Found at i:66919088 original size:42 final size:42
Alignment explanation
Indices: 66919039--66919194 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
66919029 TGAGATTATG
* *
66919039 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
1 TGTAAGACCATATCTAGGATATGGCATTGATATGAGATTTCA
* *
66919081 TGTAAGACCATATCTAGGATATGGTATTGATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGGCATTGATATGAGATTTCA
* * * *
66919123 TGTAAGACCATAGCTAGGCTATTGGCATTGATACGAGATTACA
1 TGTAAGACCATATCTAGGATA-TGGCATTGATATGAGATTTCA
* *
66919166 TGTAAGACCATATTTGGGATATGGCATTG
1 TGTAAGACCATATCTAGGATATGGCATTG
66919195 GTAAGGTACT
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 65 0.66
43 34 0.34
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATTGATATGAGATTTCA
Found at i:66919171 original size:85 final size:84
Alignment explanation
Indices: 66919029--66919194 Score: 226
Period size: 85 Copynumber: 2.0 Consensus size: 84
66919019 TTAGGGTTAC
* * * *
66919029 TGAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTAAGACCATAT
1 TGAGATTATGTGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTACATGTAAGACCATAT
*
66919094 CTAGGATATGGTATTGATA
66 CTAGGATATGGCATTGATA
* *
66919113 TGAGATT-TCGTGTAAGACCATAGCTAGGCTATTGGCATTGATACGAGATTACATGTAAGACCAT
1 TGAGATTAT-GTGTAAGACCATAGCTAGGATA-TGGCATCGATACGAGATTACATGTAAGACCAT
* *
66919177 ATTTGGGATATGGCATTG
64 ATCTAGGATATGGCATTG
66919195 GTAAGGTACT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
83 1 0.01
84 26 0.37
85 44 0.62
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.33
Consensus pattern (84 bp):
TGAGATTATGTGTAAGACCATAGCTAGGATATGGCATCGATACGAGATTACATGTAAGACCATAT
CTAGGATATGGCATTGATA
Found at i:66927001 original size:40 final size:40
Alignment explanation
Indices: 66926806--66927027 Score: 261
Period size: 40 Copynumber: 5.6 Consensus size: 40
66926796 TATTCGGATG
* * *
66926806 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
66926846 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
66926886 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
66926926 TTAACCGGGCTAAGTCCCAAAGGCATTTGTACAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
66926966 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
* * *
66927006 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
66927028 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 17 0.11
40 141 0.89
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:66942114 original size:12 final size:12
Alignment explanation
Indices: 66942097--66942125 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
66942087 TGAGACACAC
66942097 GCCCGTGTCTCT
1 GCCCGTGTCTCT
66942109 GCCCGTGTCTCT
1 GCCCGTGTCTCT
66942121 GCCCG
1 GCCCG
66942126 CCATTAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.45, G:0.28, T:0.28
Consensus pattern (12 bp):
GCCCGTGTCTCT
Found at i:66985495 original size:32 final size:32
Alignment explanation
Indices: 66985459--66985523 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
66985449 ATGTATAGGC
66985459 TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
1 TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
*
66985491 TGGGTTTTATTTTTGAAATGTTTAATTTTGGT
1 TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
66985523 T
1 T
66985524 ATGTATTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.18, C:0.02, G:0.22, T:0.58
Consensus pattern (32 bp):
TGGGTTTTACTTTTGAAATGTTTAATTTTGGT
Found at i:66985527 original size:16 final size:16
Alignment explanation
Indices: 66985476--66985532 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
66985466 TACTTTTGAA
66985476 ATGTTTAATTTTGGTT
1 ATGTTTAATTTTGGTT
** * * **
66985492 GGGTTTTATTTTTGAA
1 ATGTTTAATTTTGGTT
66985508 ATGTTTAATTTTGGTT
1 ATGTTTAATTTTGGTT
66985524 ATGTATTAA
1 ATGT-TTAA
66985533 AAGCCATGCG
Statistics
Matches: 28, Mismatches: 12, Indels: 1
0.68 0.29 0.02
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (16 bp):
ATGTTTAATTTTGGTT
Found at i:66988501 original size:29 final size:28
Alignment explanation
Indices: 66988447--66988574 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
66988437 ATAGTAAGTC
*
66988447 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
66988475 CGCACACTTAGTGCTTATATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
*
66988504 CGCACACTTAGAGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
66988532 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
66988561 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66988575 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:66988565 original size:57 final size:57
Alignment explanation
Indices: 66988446--66988571 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 57
66988436 TATAGTAAGT
* * *
66988446 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTATATAATCAAAC
1 CCGCACACTTAGAGCTATATAATCAAACTCGCACACTTAGTGCTTATACAATCAAAC
* * * *
66988503 TCGCACACTTAGAGCTATATAATCAAACTTGCACACTTAGTGC-TATGCAATTTAAAC
1 CCGCACACTTAGAGCTATATAATCAAACTCGCACACTTAGTGCTTATACAA-TCAAAC
66988560 CCGCACACTTAG
1 CCGCACACTTAG
66988572 TGCCAATCTC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
56 5 0.08
57 55 0.92
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGAGCTATATAATCAAACTCGCACACTTAGTGCTTATACAATCAAAC
Found at i:66996533 original size:28 final size:28
Alignment explanation
Indices: 66996501--66996628 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
66996491 ATAGTAAGTC
*
66996501 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
66996529 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
66996558 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
66996586 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
66996615 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66996629 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:66996591 original size:57 final size:57
Alignment explanation
Indices: 66996500--66996628 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
66996490 TATAGTAAGT
*
66996500 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
66996557 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
66996614 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
66996629 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:66999569 original size:18 final size:18
Alignment explanation
Indices: 66999534--66999571 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
66999524 GCAATAAGTG
**
66999534 ACATTTTGAAAGTTAATA
1 ACATTTTGAAAGAGAATA
66999552 ACATTTTGAAAGAGAATA
1 ACATTTTGAAAGAGAATA
66999570 AC
1 AC
66999572 TTTATGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (18 bp):
ACATTTTGAAAGAGAATA
Found at i:67033739 original size:40 final size:40
Alignment explanation
Indices: 67033691--67033842 Score: 259
Period size: 40 Copynumber: 3.8 Consensus size: 40
67033681 GGATATAGCT
***
67033691 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
* *
67033731 GCTCGCACAAATGCCTTCGGGACTTAGCCCGAAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
67033771 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
67033811 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
67033843 TTATCATCCG
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
Found at i:67036120 original size:46 final size:45
Alignment explanation
Indices: 67035950--67036121 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 45
67035940 TGTAACCTGC
* * * ** *
67035950 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GATGCTCACAT
* **
67035996 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGATGCTC-ACAT
* *** *
67036042 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACGCTCACAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCG-ATGCTCACAT
67036089 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
67036122 TGGATACCCA
Statistics
Matches: 100, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.65
47 33 0.33
48 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGATGCTCACAT
Found at i:67037674 original size:16 final size:17
Alignment explanation
Indices: 67037653--67037684 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67037643 TAAGGTTGCA
67037653 TAGCTATTAG-ACACTT
1 TAGCTATTAGAACACTT
67037669 TAGCTATTAGAACACT
1 TAGCTATTAGAACACT
67037685 ACTTTTGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (17 bp):
TAGCTATTAGAACACTT
Found at i:67038968 original size:17 final size:17
Alignment explanation
Indices: 67038946--67038978 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
67038936 ACTTCCCTTC
67038946 TCATCTTTTCTTTTCTT
1 TCATCTTTTCTTTTCTT
67038963 TCATCTTTTCTTTTCT
1 TCATCTTTTCTTTTCT
67038979 CCATAGCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TCATCTTTTCTTTTCTT
Found at i:67040068 original size:28 final size:28
Alignment explanation
Indices: 67040032--67040151 Score: 150
Period size: 28 Copynumber: 4.3 Consensus size: 28
67040022 GGAGGAAGCG
* * *
67040032 TTCTAGTGGCTCTGCCAAAAATATCTGT
1 TTCTGGTGGCTCTACCATAAATATCTGT
* *
67040060 TCCTGGTGGCTCTACCATAAATATCTAT
1 TTCTGGTGGCTCTACCATAAATATCTGT
67040088 TTCTGGTGGCTCTACCATAAATATCTGT
1 TTCTGGTGGCTCTACCATAAATATCTGT
* * * *
67040116 TTTTGGTGGCCCTGCCATAATTATCTGT
1 TTCTGGTGGCTCTACCATAAATATCTGT
*
67040144 ATCTGGTG
1 TTCTGGTG
67040152 ATTCTGTCAC
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 79 1.00
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTACCATAAATATCTGT
Found at i:67047890 original size:28 final size:28
Alignment explanation
Indices: 67047850--67047993 Score: 195
Period size: 28 Copynumber: 5.2 Consensus size: 28
67047840 GGAGGAAGCG
*
67047850 TTCTGGTGGCTCTGCCATAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
67047878 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
67047906 TTCTGGTGGCTCTACCGCAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
67047934 TTCTGGTGGC-CTTGCCACAATTATCTGT
1 TTCTGGTGGCTC-TGCCACAAATATCTGT
* * *
67047962 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
67047988 TTCTGG
1 TTCTGG
67047994 CAGTCATGCT
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.05
27 8 0.08
28 89 0.86
29 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:67050739 original size:22 final size:22
Alignment explanation
Indices: 67050711--67050759 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
67050701 CTAAAGCTCT
67050711 TATACCAATAAATGTAACACCC
1 TATACCAATAAATGTAACACCC
*
67050733 TATACCACTAAATGTAACACCC
1 TATACCAATAAATGTAACACCC
67050755 TATAC
1 TATAC
67050760 TCGGCCCGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.43, C:0.29, G:0.04, T:0.24
Consensus pattern (22 bp):
TATACCAATAAATGTAACACCC
Found at i:67062078 original size:17 final size:17
Alignment explanation
Indices: 67062058--67062096 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
67062048 ATCAGAAAGG
67062058 AAGATACA-TGAACTTGA
1 AAGATACATTGAA-TTGA
67062075 AAGATACATTGAATTGA
1 AAGATACATTGAATTGA
67062092 AAGAT
1 AAGAT
67062097 TCAAGTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (17 bp):
AAGATACATTGAATTGA
Found at i:67064786 original size:16 final size:17
Alignment explanation
Indices: 67064754--67064786 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
67064744 AATTAATTGG
*
67064754 TTATCATCTTTTAATTT
1 TTATCATCTTCTAATTT
67064771 TTATCAT-TTCTAATTT
1 TTATCATCTTCTAATTT
67064787 AGTCCTTACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATCATCTTCTAATTT
Found at i:67065551 original size:18 final size:17
Alignment explanation
Indices: 67065528--67065579 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
67065518 TCGGGGACCT
67065528 TATTTTATCTATCTATCC
1 TATTTTAT-TATCTATCC
*
67065546 TATTTTATTTATCAAT--
1 TATTTTA-TTATCTATCC
*
67065562 TATTTTATTTTCTATCC
1 TATTTTATTATCTATCC
67065579 T
1 T
67065580 TTTAATCTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
15 6 0.21
16 7 0.25
17 1 0.04
18 13 0.46
19 1 0.04
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTTATTATCTATCC
Found at i:67067207 original size:53 final size:53
Alignment explanation
Indices: 67067116--67067221 Score: 158
Period size: 53 Copynumber: 2.0 Consensus size: 53
67067106 AGACTCCCTA
* * * *
67067116 TGTAACACCCCTAACCCGTAACTAACATTGGATTAGGGTTACAAGGCATTACC
1 TGTAACACCCCTAACCCGTAACCAACATCGAATCAGGGTTACAAGGCATTACC
* *
67067169 TGTAACACCCCTAACCCGTAACCGACATCGAATCAGGGTTACGAGGCATTACC
1 TGTAACACCCCTAACCCGTAACCAACATCGAATCAGGGTTACAAGGCATTACC
67067222 AGATAAATAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (53 bp):
TGTAACACCCCTAACCCGTAACCAACATCGAATCAGGGTTACAAGGCATTACC
Found at i:67068413 original size:85 final size:84
Alignment explanation
Indices: 67068270--67068431 Score: 211
Period size: 85 Copynumber: 1.9 Consensus size: 84
67068260 CATAAACAAG
* * * *
67068270 TACAATGCCGATGCCCCAGACGTGGTCTTACATGTAATTCAATATCGATGCCTTTGTCCCAGACA
1 TACAATGACGATGCCCCAGACATGGTCTTACATGTAATTCAATATCGAGGCCTGTGT-CCAGACA
**
67068335 GGGTCTTACACGAAATCAGA
65 CAGTCTTACACGAAATCAGA
* *
67068355 TACAATGACGATGTCCCAGACATGGTCTTATATGTAAATCTC-A-ATCGAGGCCTGTGTCCAGAC
1 TACAATGACGATGCCCCAGACATGGTCTTACATGT-AAT-TCAATATCGAGGCCTGTGTCCAGAC
67068418 ACAGTCTTACACGA
64 ACAGTCTTACACGA
67068432 TGTCTCAGAC
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
84 18 0.27
85 43 0.64
86 4 0.06
87 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (84 bp):
TACAATGACGATGCCCCAGACATGGTCTTACATGTAATTCAATATCGAGGCCTGTGTCCAGACAC
AGTCTTACACGAAATCAGA
Found at i:67070399 original size:17 final size:17
Alignment explanation
Indices: 67070368--67070402 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
67070358 AGAAAATTTT
**
67070368 GACTGTATGGGTCACAC
1 GACTGTATGCCTCACAC
67070385 GACTGTATGCCTCACAC
1 GACTGTATGCCTCACAC
67070402 G
1 G
67070403 GCTAAGACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (17 bp):
GACTGTATGCCTCACAC
Found at i:67072271 original size:55 final size:53
Alignment explanation
Indices: 67072162--67072370 Score: 217
Period size: 55 Copynumber: 3.9 Consensus size: 53
67072152 CATTAGGGTT
* ** *
67072162 CAAGGATACCATGTAAGACCATG-CTAAGGTATGTCAATTGGTAAGGTTTC-TAAGG
1 CAAGGATATCATGTAAGACCATGTC-AAGACATGGC-ATTGGTAA-G-TTCATAAGG
* *
67072217 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG
* * * * *
67072272 CAATGG-TCTCACGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG
1 CAA-GGATATCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
* *
67072325 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 CAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
67072371 TCAAAAAGAT
Statistics
Matches: 128, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 4 0.03
53 44 0.34
54 8 0.06
55 69 0.54
56 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (53 bp):
CAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
Found at i:67079822 original size:55 final size:54
Alignment explanation
Indices: 67079733--67079988 Score: 246
Period size: 55 Copynumber: 4.8 Consensus size: 54
67079723 CATTAGGGTT
**
67079733 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
67079788 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * * *
67079843 CAAAGG-TCCCATGTAAGACCATGCCAAGGCTTGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
67079896 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * * *
67079946 -AAGGATACCATGCAAGACCATGACAAGTCAAGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
67079989 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 40 0.24
54 12 0.07
55 66 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:67079940 original size:108 final size:110
Alignment explanation
Indices: 67079741--67079941 Score: 302
Period size: 108 Copynumber: 1.8 Consensus size: 110
67079731 TTCAAGGATA
* *
67079741 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
67079806 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
67079851 CCATGTAAGACCATGCCAAGGCT-TGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAA
1 CCATGTAAGACCATGCCAAGG-TATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAA
*
67079912 GACCATGTCAAGACATGGCAATGGTAAGTT
64 GACCATGTCAAGACATGGCAATGATAAGTT
67079942 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 7 0.08
110 24 0.29
111 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:67090627 original size:20 final size:20
Alignment explanation
Indices: 67090602--67090647 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
67090592 TAGGGACTAA
*
67090602 AATGAAAAATTGTAAAATTT
1 AATGAAAAATTCTAAAATTT
67090622 AATGAAAAATTCTAAAATTT
1 AATGAAAAATTCTAAAATTT
*
67090642 TATGAA
1 AATGAA
67090648 TACAAGTGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.35
Consensus pattern (20 bp):
AATGAAAAATTCTAAAATTT
Found at i:67092018 original size:22 final size:20
Alignment explanation
Indices: 67091970--67092018 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
67091960 TCTTAACTAC
*
67091970 TCAAATTCATAGCCAAAACA
1 TCAAATTAATAGCCAAAACA
67091990 TACCAAATTAATATGCCAAAATCA
1 T--CAAATTAATA-GCCAAAA-CA
67092014 TCAAA
1 TCAAA
67092019 CTTACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.22, G:0.04, T:0.22
Consensus pattern (20 bp):
TCAAATTAATAGCCAAAACA
Found at i:67103702 original size:47 final size:47
Alignment explanation
Indices: 67103632--67103757 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 47
67103622 TCAATCATTA
* *
67103632 AGTACCTATACCATGGCCTGTAGCCAAATCAAACTAACTTATCCCGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAACTAACTCATCCCGG
* ** * * *
67103679 AGTACTTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAACTAACTCATCCCGG
* **
67103726 AATACCTATACCATGGCTGGTAGCCAAATCAA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAA
67103758 GGTATTATTC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAACTAACTCATCCCGG
Found at i:67111621 original size:21 final size:21
Alignment explanation
Indices: 67111595--67111636 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
67111585 TATTAGCCAT
67111595 ACGAGCTTACTAAGCTTTATA
1 ACGAGCTTACTAAGCTTTATA
67111616 ACGAGCTTACTAAGCTTTATA
1 ACGAGCTTACTAAGCTTTATA
67111637 GCTTACTCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
ACGAGCTTACTAAGCTTTATA
Found at i:67114307 original size:21 final size:21
Alignment explanation
Indices: 67114282--67114324 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
67114272 ACAAATCTTA
67114282 TATATATAGATATATATGCAT
1 TATATATAGATATATATGCAT
67114303 TATATATAGATATATATGCAT
1 TATATATAGATATATATGCAT
67114324 T
1 T
67114325 CACGTGTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (21 bp):
TATATATAGATATATATGCAT
Found at i:67116699 original size:27 final size:27
Alignment explanation
Indices: 67116669--67116846 Score: 91
Period size: 27 Copynumber: 6.6 Consensus size: 27
67116659 ATATTGAGCC
* * *
67116669 CGCACACTCAGTGCTA-TACAATCAACT
1 CGCACACTTAGTGCTACGA-AATCAAAT
*
67116696 CGCACACTTAGTGCCACGAAATCAAAT
1 CGCACACTTAGTGCTACGAAATCAAAT
* * *
67116723 CGCACACTTAGTGCTAC-ATAGTTAGACT
1 CGCACACTTAGTGCTACGA-AATCA-AAT
** *
67116751 CGCACACTTAGTGC--CGCATGGTCAATT
1 CGCACACTTAGTGCTACG-A-AATCAAAT
* **
67116778 CGCACACTTAGTGC-ATC-ATATTCATTT
1 CGCACACTTAGTGCTA-CGA-AATCAAAT
* * *
67116805 CGCACACTTAGTGCAAC-ATAGTCGAAT
1 CGCACACTTAGTGCTACGA-AATCAAAT
67116832 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67116847 GTACAATTTA
Statistics
Matches: 124, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.02
27 98 0.79
28 23 0.19
29 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACGAAATCAAAT
Found at i:67116762 original size:55 final size:55
Alignment explanation
Indices: 67116669--67116846 Score: 197
Period size: 54 Copynumber: 3.3 Consensus size: 55
67116659 ATATTGAGCC
* *
67116669 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGA-AATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCAC-ATAGTCAAAT
* * *
67116723 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
67116778 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
67116832 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67116847 GTACAATTTA
Statistics
Matches: 104, Mismatches: 12, Indels: 15
0.79 0.09 0.11
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 57 0.55
55 44 0.42
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:67122820 original size:8 final size:8
Alignment explanation
Indices: 67122807--67122832 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
67122797 TCCTATGTCT
67122807 AAAAATTC
1 AAAAATTC
67122815 AAAAATTC
1 AAAAATTC
67122823 AAAAATTC
1 AAAAATTC
67122831 AA
1 AA
67122833 CCGGGTCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAAATTC
Found at i:67132442 original size:17 final size:18
Alignment explanation
Indices: 67132419--67132460 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
67132409 TCTCAAGATA
67132419 AATATTAGA-TTAAATTT
1 AATATTAGACTTAAATTT
* *
67132436 CATATTA-ACTTTAATTT
1 AATATTAGACTTAAATTT
67132453 AATATTAG
1 AATATTAG
67132461 GATAATCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (18 bp):
AATATTAGACTTAAATTT
Found at i:67132548 original size:26 final size:27
Alignment explanation
Indices: 67132506--67132558 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
67132496 TCAAGATATG
*
67132506 TATTAAATTAAATTTAATATT-AAATA
1 TATTAAAATAAATTTAATATTGAAATA
*
67132532 TATTAAAAT-AATATTAATTTTGAAATA
1 TATTAAAATAAAT-TTAATATTGAAATA
67132559 GTTAATCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 3 0.13
26 15 0.65
27 5 0.22
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (27 bp):
TATTAAAATAAATTTAATATTGAAATA
Found at i:67155750 original size:21 final size:21
Alignment explanation
Indices: 67155726--67155767 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
67155716 CTGTCTGAAG
67155726 CATCTGGAACATGACTGGCTT
1 CATCTGGAACATGACTGGCTT
*
67155747 CATCTGGAACATGATTGGCTT
1 CATCTGGAACATGACTGGCTT
67155768 TAGTCGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (21 bp):
CATCTGGAACATGACTGGCTT
Found at i:67158212 original size:20 final size:18
Alignment explanation
Indices: 67158187--67158232 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
67158177 ACCATGTTCA
67158187 TATTTTTTACATGACTTAAT
1 TATTTTTTA-AT-ACTTAAT
* *
67158207 TATTTTATAATATTTAAT
1 TATTTTTTAATACTTAAT
67158225 TATTTTTT
1 TATTTTTT
67158233 GAAAAGAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 13 0.57
19 2 0.09
20 8 0.35
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTTTTTAATACTTAAT
Found at i:67160890 original size:19 final size:19
Alignment explanation
Indices: 67160866--67160917 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
67160856 TGGGTTCTTG
67160866 GGCCCAATTTTCAATCTCA
1 GGCCCAATTTTCAATCTCA
*
67160885 GGCCCAATTTTCGATCTCA
1 GGCCCAATTTTCAATCTCA
* *
67160904 AGTCCAATTTTCAA
1 GGCCCAATTTTCAA
67160918 GTTCAATTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (19 bp):
GGCCCAATTTTCAATCTCA
Found at i:67170511 original size:18 final size:18
Alignment explanation
Indices: 67170468--67170516 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
67170458 ACATTGATGC
67170468 TGCTGAAGAAGAAGTTGT
1 TGCTGAAGAAGAAGTTGT
**
67170486 TG-TCGAAGCGGAAGTTGT
1 TGCT-GAAGAAGAAGTTGT
67170504 TGCTGAAGAAGAA
1 TGCTGAAGAAGAA
67170517 AAAGTTGCTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.33, C:0.08, G:0.35, T:0.24
Consensus pattern (18 bp):
TGCTGAAGAAGAAGTTGT
Found at i:67173958 original size:34 final size:35
Alignment explanation
Indices: 67173900--67173987 Score: 110
Period size: 34 Copynumber: 2.5 Consensus size: 35
67173890 AATATGCACA
*
67173900 TTCAAAATAACTTCACATAAAATCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAATCGAATA-ATCAAG
**
67173935 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAATCGAATAATCAAG
67173969 TTCAATATAAGCTT-ACATA
1 TTCAATATAA-CTTCACATA
67173988 TACTTACCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
33 2 0.04
34 29 0.63
35 13 0.28
36 2 0.04
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.32
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAATCGAATAATCAAG
Found at i:67174790 original size:30 final size:29
Alignment explanation
Indices: 67174756--67174820 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
67174746 ATACTCATAC
*
67174756 TAGTCCAT-ATATTTCATTTATTTTT-CATTT
1 TAGTCCATCA-ATTT-A-TTATTTTTGCAATT
*
67174786 TAGTCCTTCAATTTATTATTTTTGCAATT
1 TAGTCCATCAATTTATTATTTTTGCAATT
67174815 TAGTCC
1 TAGTCC
67174821 TATTAACGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.26
29 11 0.35
30 11 0.35
31 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (29 bp):
TAGTCCATCAATTTATTATTTTTGCAATT
Found at i:67175395 original size:13 final size:13
Alignment explanation
Indices: 67175377--67175401 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67175367 ACAAACAAAC
67175377 AAATTTTCATACG
1 AAATTTTCATACG
67175390 AAATTTTCATAC
1 AAATTTTCATAC
67175402 ATGTAAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCATACG
Found at i:67186648 original size:37 final size:37
Alignment explanation
Indices: 67186598--67186676 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67186588 TTATTACGAA
* * *
67186598 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
67186635 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
67186672 GTCTT
1 GTCTT
67186677 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:67186873 original size:47 final size:47
Alignment explanation
Indices: 67186795--67187495 Score: 1143
Period size: 47 Copynumber: 14.7 Consensus size: 47
67186785 CCCTTCGGGA
* * * * * *
67186795 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67186842 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67186889 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67186936 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67186983 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67187030 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67187077 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67187124 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67187171 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67187218 TTTATCACATAGATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
67187267 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67187316 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67187363 CTTATCACACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67187414 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67187461 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
67187496 AGAATCCTAA
Statistics
Matches: 618, Mismatches: 27, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 478 0.77
49 93 0.15
51 46 0.07
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67199864 original size:17 final size:17
Alignment explanation
Indices: 67199838--67199871 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67199828 TATATATTTG
*
67199838 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
67199855 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
67199872 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:67200602 original size:2 final size:2
Alignment explanation
Indices: 67200597--67200623 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67200587 TATATATATA
67200597 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
67200624 TTTATTGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:67201244 original size:24 final size:24
Alignment explanation
Indices: 67201212--67201345 Score: 173
Period size: 24 Copynumber: 5.6 Consensus size: 24
67201202 GAAATGACAT
67201212 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
67201236 TGGCACTATGTATGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
67201260 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * *
67201284 TGGCACTACGTGTGTGGATTAGCAA
1 TGGCACTATGTGTGCGGATTTG-AA
* *
67201309 -GGCACTATGTGTGCAGG-TTAGCA
1 TGGCACTATGTGTGC-GGATTTGAA
*
67201332 TCGCACTATGTGTG
1 TGGCACTATGTGTG
67201346 TGAATTTCCT
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
23 1 0.01
24 93 0.95
25 4 0.04
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:67210491 original size:20 final size:20
Alignment explanation
Indices: 67210462--67210504 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
67210452 TTCTTGAGTA
67210462 ATTTGATGGTTT-ATGATAG
1 ATTTGATGGTTTAATGATAG
*
67210481 ATTTGGATGGTTTAATGTTAG
1 ATTT-GATGGTTTAATGATAG
67210502 ATT
1 ATT
67210505 AATAGCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 8 0.38
21 9 0.43
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (20 bp):
ATTTGATGGTTTAATGATAG
Found at i:67211030 original size:40 final size:40
Alignment explanation
Indices: 67210971--67211107 Score: 202
Period size: 40 Copynumber: 3.4 Consensus size: 40
67210961 CAGTTATTTG
* *
67210971 TGGCACTTAGTGTGTGATTTGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATA
*
67211011 TGGCACTTAGTGTGCGATTTGAGATACCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATA
* * *
67211051 TGGCACATAGTGTGCGATTTAAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATA
**
67211091 CAGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
67211108 GATGTCGAGT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATA
Found at i:67213386 original size:18 final size:19
Alignment explanation
Indices: 67213363--67213400 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
67213353 CCGAATGTAC
67213363 TTTTCAAATACA-CATATA
1 TTTTCAAATACATCATATA
**
67213381 TTTTCATTTACATCATATA
1 TTTTCAAATACATCATATA
67213400 T
1 T
67213401 AATTTGCATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTTCAAATACATCATATA
Found at i:67215083 original size:21 final size:20
Alignment explanation
Indices: 67215049--67215087 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
67215039 AATGTTCTTT
67215049 CATTGCATCCTCAAGCTCCCA
1 CATTGCATCCTCAA-CTCCCA
* *
67215070 CATTGCCTCTTCAACTCC
1 CATTGCATCCTCAACTCC
67215088 GTGTTTATGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.21, C:0.44, G:0.08, T:0.28
Consensus pattern (20 bp):
CATTGCATCCTCAACTCCCA
Found at i:67223262 original size:31 final size:31
Alignment explanation
Indices: 67223224--67223287 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
67223214 CCTTTTCATA
67223224 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
67223255 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
67223286 TT
1 TT
67223288 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:67223532 original size:24 final size:24
Alignment explanation
Indices: 67223495--67223575 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
67223485 CTAGAGGCCT
* *
67223495 AGCCTCTTTGAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
67223520 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
67223544 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
67223567 AGCCCTTTT
1 AGCCCTTTT
67223576 TCACTTCCTC
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
23 23 0.43
24 26 0.49
25 4 0.08
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:67223556 original size:23 final size:23
Alignment explanation
Indices: 67223495--67223574 Score: 124
Period size: 23 Copynumber: 3.3 Consensus size: 23
67223485 CTAGAGGCCT
*
67223495 AGCCTCTTTGAATAACTGGGGCAAA
1 AGCC-CTTT-AATAACTGGGGCATA
67223520 AGCCCTTTTAATAACTGGGGCATA
1 AGCCC-TTTAATAACTGGGGCATA
67223544 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
67223567 AGCCCTTT
1 AGCCCTTT
67223575 TTCACTTCCT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
23 26 0.49
24 20 0.38
25 7 0.13
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
AGCCCTTTAATAACTGGGGCATA
Found at i:67223670 original size:20 final size:20
Alignment explanation
Indices: 67223631--67223671 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67223621 TTACATCATA
* **
67223631 TGCATATCATATATGTCATG
1 TGCATATCATACATACCATG
67223651 TGCATATCATACATACCATG
1 TGCATATCATACATACCATG
67223671 T
1 T
67223672 TTATCAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TGCATATCATACATACCATG
Found at i:67225633 original size:68 final size:68
Alignment explanation
Indices: 67225538--67225695 Score: 298
Period size: 68 Copynumber: 2.3 Consensus size: 68
67225528 TTCACTTGGA
* *
67225538 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
67225603 CGT
66 CGT
67225606 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
67225671 CGT
66 CGT
67225674 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
67225696 TATATAGTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:67225712 original size:68 final size:67
Alignment explanation
Indices: 67225538--67225721 Score: 264
Period size: 68 Copynumber: 2.7 Consensus size: 67
67225528 TTCACTTGGA
* * *
67225538 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCC
67225603 CGT
65 CGT
*
67225606 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCC
67225671 CGT
65 CGT
*
67225674 ATCACACATGTGACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ATCACACATGTGACCTAGCTAC-ATTTA-TATCTACGTAGCTC-TCTTGT
67225722 ACACATGATG
Statistics
Matches: 109, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
67 1 0.01
68 100 0.92
69 4 0.04
70 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (67 bp):
ATCACACATGTGACCTAGCTACATTTATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCC
GT
Found at i:67234074 original size:18 final size:19
Alignment explanation
Indices: 67234051--67234088 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
67234041 CCGAGTGTAT
67234051 TTTTCATATACA-CATATA
1 TTTTCATATACATCATATA
*
67234069 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
67234088 T
1 T
67234089 AATTTGCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTTCATATACATCATATA
Found at i:67234365 original size:41 final size:44
Alignment explanation
Indices: 67234258--67234427 Score: 145
Period size: 45 Copynumber: 3.9 Consensus size: 44
67234248 ATATTGTACA
* * * *
67234258 ATGCCAACATCCTAGACGTGGTCTTACATGTAATCAC--ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AATCACATATATCG
* * * * * *
67234301 ATGCC-ACTATCCTAAATAGGGTCTTAAACGAATCA-A-ATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAATCACATATATCG
*
67234342 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AATCACATATATCG
* *
67234387 ATGCCAACGTCCCAGACATAGTCTTACACGAGAACACATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGA-ATCACATAT
67234428 CGAAAATCCT
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
41 22 0.21
42 17 0.17
43 22 0.21
44 5 0.05
45 37 0.36
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAATCACATATATCG
Found at i:67234392 original size:45 final size:44
Alignment explanation
Indices: 67234271--67234416 Score: 156
Period size: 45 Copynumber: 3.4 Consensus size: 44
67234261 CCAACATCCT
* * * * *
67234271 AGACGTGGTCTTACATGTAATCAC-ATATCGATGCCACTATCCT
1 AGACATGGTCTTACACGTAATCACAATATCGATGCCAATGTCCC
* * * *
67234314 AAATAGGGTCTTAAACG-AATCA-AATAT-GATGCCAATGTCCC
1 AGACATGGTCTTACACGTAATCACAATATCGATGCCAATGTCCC
*
67234355 AGACATGGTCTTACACGTAATCACATATATCGATGCCAACGTCCC
1 AGACATGGTCTTACACGTAATCACA-ATATCGATGCCAATGTCCC
*
67234400 AGACATAGTCTTACACG
1 AGACATGGTCTTACACG
67234417 AGAACACATA
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
41 24 0.29
42 14 0.17
43 12 0.14
44 4 0.05
45 29 0.35
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (44 bp):
AGACATGGTCTTACACGTAATCACAATATCGATGCCAATGTCCC
Found at i:67241981 original size:31 final size:32
Alignment explanation
Indices: 67241943--67242005 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
67241933 TTTCTTCTTA
67241943 TTAATCTCAAT-CAATCCTTTCTTTT-TTTTCC
1 TTAATCTCAATCCAA-CCTTTCTTTTCTTTTCC
*
67241974 TTAATCTCAATCCAACTTTTCTTTTCTTTTCC
1 TTAATCTCAATCCAACCTTTCTTTTCTTTTCC
67242006 CTAAACCCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 20 0.69
32 9 0.31
ACGTcount: A:0.19, C:0.27, G:0.00, T:0.54
Consensus pattern (32 bp):
TTAATCTCAATCCAACCTTTCTTTTCTTTTCC
Found at i:67242018 original size:31 final size:31
Alignment explanation
Indices: 67241960--67242019 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
67241950 CAATCAATCC
* *
67241960 TTTCTTTTTTTTCCTTAATCTCAATCCAACT
1 TTTCTTTTTTTTCCCTAAACTCAATCCAACT
*
67241991 TTTCTTTTCTTTTCCCTAAAC-CCATCCAA
1 TTTCTTTT-TTTTCCCTAAACTCAATCCAA
67242020 ACCTTAGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 15 0.60
32 10 0.40
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (31 bp):
TTTCTTTTTTTTCCCTAAACTCAATCCAACT
Found at i:67242079 original size:21 final size:21
Alignment explanation
Indices: 67242055--67242096 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
67242045 CAACGTGGCA
*
67242055 AGTTAACTGGCCACGTCACTT
1 AGTTAACCGGCCACGTCACTT
*
67242076 AGTTAACCGGCCATGTCACTT
1 AGTTAACCGGCCACGTCACTT
67242097 GTCCCATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (21 bp):
AGTTAACCGGCCACGTCACTT
Found at i:67243816 original size:25 final size:25
Alignment explanation
Indices: 67243787--67243836 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
67243777 TATATTGGGC
67243787 ATGTAATTACTTTCCTATTGAAATT
1 ATGTAATTACTTTCCTATTGAAATT
67243812 ATGTAATTACTTTCCTATTGAAATT
1 ATGTAATTACTTTCCTATTGAAATT
67243837 TATTTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (25 bp):
ATGTAATTACTTTCCTATTGAAATT
Found at i:67258731 original size:24 final size:24
Alignment explanation
Indices: 67258697--67258772 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
67258687 ATCTTTTTCG
*
67258697 TCTTCACCTCGATCC-TCGTAC-TCA
1 TCTTCATCTCGA-CCTTCG-ACTTCA
*
67258721 TCTTCATCTCGACCTTCGCCTTCA
1 TCTTCATCTCGACCTTCGACTTCA
* * *
67258745 TCTTCATCTTGACCTTCGCCTTCG
1 TCTTCATCTCGACCTTCGACTTCA
67258769 TCTT
1 TCTT
67258773 TGTCTTTGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.07
24 43 0.93
ACGTcount: A:0.12, C:0.39, G:0.09, T:0.39
Consensus pattern (24 bp):
TCTTCATCTCGACCTTCGACTTCA
Found at i:67258778 original size:24 final size:24
Alignment explanation
Indices: 67258718--67258772 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
67258708 ATCCTCGTAC
*
67258718 TCATCTTCATCTCGACCTTCGCCT
1 TCATCTTCATCTTGACCTTCGCCT
67258742 TCATCTTCATCTTGACCTTCGCCT
1 TCATCTTCATCTTGACCTTCGCCT
*
67258766 TCGTCTT
1 TCATCTT
67258773 TGTCTTTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.11, C:0.38, G:0.09, T:0.42
Consensus pattern (24 bp):
TCATCTTCATCTTGACCTTCGCCT
Found at i:67261509 original size:18 final size:19
Alignment explanation
Indices: 67261486--67261523 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
67261476 CAAGAATTTA
67261486 ATTTTT-ATTTTTATATAT
1 ATTTTTAATTTTTATATAT
67261504 ATTTTTGAATTTTTATATAT
1 ATTTTT-AATTTTTATATAT
67261524 TAAATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
20 12 0.67
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
ATTTTTAATTTTTATATAT
Found at i:67261531 original size:22 final size:21
Alignment explanation
Indices: 67261492--67261541 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
67261482 TTTAATTTTT
**
67261492 ATTTTTATATAT-ATTTTTGA
1 ATTTTTATATATAATTTTAAA
67261512 ATTTTTATATATTAAATTTTAAA
1 ATTTTTATATA-T-AATTTTAAA
67261535 ATTTTTA
1 ATTTTTA
67261542 AGATTATGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.44
21 1 0.04
23 13 0.52
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTTTTATATATAATTTTAAA
Found at i:67270966 original size:38 final size:39
Alignment explanation
Indices: 67270914--67270996 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
67270904 TTGTCTGAAC
* *
67270914 TAAAGACATGTATTAAAGACGT-CTAAACTAAGACATATT
1 TAAA-ACATATATTAAAGACGTCCTAAACTAAGACATAAT
** * *
67270953 TAAAACATATATTAAAGGTGTCCTAAACTATGGCATAAT
1 TAAAACATATATTAAAGACGTCCTAAACTAAGACATAAT
67270992 TAAAA
1 TAAAA
67270997 ACCCTTATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 14 0.38
39 23 0.62
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (39 bp):
TAAAACATATATTAAAGACGTCCTAAACTAAGACATAAT
Found at i:67271902 original size:74 final size:72
Alignment explanation
Indices: 67271781--67271957 Score: 266
Period size: 74 Copynumber: 2.4 Consensus size: 72
67271771 AAAATTCATT
* *
67271781 GTTCTCAATGGCTGGTGGATTCTAATTCTAAACCATCACCACCTAAAATTGAATGTTGAAACTAT
1 GTTCTTAATGGCTGGTGGATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAACTAT
67271846 CACCATC
66 CACCATC
*
67271853 GTTCTTAATGGCTGGTGGCGATTCTACTTCTAAACCATCACCACTTAAAATTGAATGTTGAAACT
1 GTTCTTAATGGCTGGT-G-GATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAACT
67271918 ATCACCATC
64 ATCACCATC
*
67271927 GTCCTTAATGGCTAGCAGT-GATTCTACTTCT
1 GTTCTTAATGGCT-G--GTGGATTCTACTTCT
67271958 CCACCACCTA
Statistics
Matches: 96, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
72 15 0.16
73 1 0.01
74 77 0.80
75 1 0.01
77 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (72 bp):
GTTCTTAATGGCTGGTGGATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAACTAT
CACCATC
Found at i:67274411 original size:13 final size:13
Alignment explanation
Indices: 67274393--67274458 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
67274383 AGTTTGGCAA
*
67274393 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
67274406 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
67274419 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
67274432 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
67274445 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
67274458 T
1 T
67274459 TTGGTTTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
12 3 0.07
13 40 0.87
14 3 0.07
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Done.