Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 203 of 332
Found at i:67599643 original size:35 final size:35
Alignment explanation
Indices: 67599595--67599688 Score: 136
Period size: 35 Copynumber: 2.7 Consensus size: 35
67599585 CTAATATAAT
* * *
67599595 AGATTTTATATATGGACCATGGACTA-TGATTTCTA
1 AGATTTTACATATGGACTATGGACTACAG-TTTCTA
67599630 AGATTTTACATATGGACTATGGACTACAGTTTCTA
1 AGATTTTACATATGGACTATGGACTACAGTTTCTA
*
67599665 AGATTTTACTTATGGACTATGGAC
1 AGATTTTACATATGGACTATGGAC
67599689 CATGGACCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 53 0.98
36 1 0.02
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (35 bp):
AGATTTTACATATGGACTATGGACTACAGTTTCTA
Found at i:67605568 original size:18 final size:17
Alignment explanation
Indices: 67605541--67605574 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
67605531 GTTTATTTTT
*
67605541 ATTTTTAAAATTTTTAA
1 ATTTTTAAAACTTTTAA
67605558 ATTTATTAAAACTTTTA
1 ATTT-TTAAAACTTTTA
67605575 TATAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTTAAAACTTTTAA
Found at i:67605635 original size:14 final size:14
Alignment explanation
Indices: 67605611--67605649 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
67605601 TTTCAATTTT
67605611 ATTTT-AATAATAA
1 ATTTTAAATAATAA
67605624 ATTTTAAATAAT-A
1 ATTTTAAATAATAA
67605637 ATTTTAAATAATA
1 ATTTTAAATAATA
67605650 TTCTTCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATTTTAAATAATAA
Found at i:67605675 original size:23 final size:22
Alignment explanation
Indices: 67605646--67605695 Score: 77
Period size: 20 Copynumber: 2.3 Consensus size: 22
67605636 AATTTTAAAT
67605646 AATATTCTTCACATATTATTGAA
1 AATATT-TTCACATATTATTGAA
67605669 AATA--TTCACATATTATTGAA
1 AATATTTTCACATATTATTGAA
67605689 AATATTT
1 AATATTT
67605696 GTTAAACTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 20 0.80
22 1 0.04
23 4 0.16
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (22 bp):
AATATTTTCACATATTATTGAA
Found at i:67605678 original size:20 final size:20
Alignment explanation
Indices: 67605653--67605694 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
67605643 AATAATATTC
67605653 TTCACATATTATTGAAAATA
1 TTCACATATTATTGAAAATA
67605673 TTCACATATTATTGAAAATA
1 TTCACATATTATTGAAAATA
67605693 TT
1 TT
67605695 TGTTAAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.43
Consensus pattern (20 bp):
TTCACATATTATTGAAAATA
Found at i:67610601 original size:47 final size:45
Alignment explanation
Indices: 67610494--67610615 Score: 145
Period size: 47 Copynumber: 2.6 Consensus size: 45
67610484 TTAGCTAGTG
* * *
67610494 GTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGG-CACAAGACGAGAGCCAAT
* * *
67610540 GTAAGACCACGTCTGGGACATGGCATCGGCATCAAGACGAGTGCTAAT
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCA-CAAGACGAGAGCCAAT
*
67610588 GTAAGACATGTCTGAGACATGCATCGGC
1 GTAAGACATGTCTGGGACATGCATCGGC
67610616 CTCGAAATGT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 14 0.22
47 27 0.42
48 24 0.37
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.20
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCGGCACAAGACGAGAGCCAAT
Found at i:67613884 original size:17 final size:17
Alignment explanation
Indices: 67613864--67613896 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67613854 ATAAAGAATG
67613864 TTATTAAATAATATTTT
1 TTATTAAATAATATTTT
*
67613881 TTATTAAATTATATTT
1 TTATTAAATAATATTT
67613897 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAATAATATTTT
Found at i:67614163 original size:16 final size:16
Alignment explanation
Indices: 67614142--67614193 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
67614132 TGAATTACTT
67614142 ATTACAACTCTATTCA
1 ATTACAACTCTATTCA
67614158 ATTACAACTCTATTCA
1 ATTACAACTCTATTCA
* *
67614174 ATTACAACCCTATTCC
1 ATTACAACTCTATTCA
67614190 ATTA
1 ATTA
67614194 TAGTGAACCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTACAACTCTATTCA
Found at i:67620686 original size:20 final size:21
Alignment explanation
Indices: 67620661--67620700 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
67620651 GAGTGTCTTT
67620661 TTTCTAATAT-AG-ATCAAGAA
1 TTTCTAA-ATCAGAATCAAGAA
67620681 TTTCTAAATCAGAATCAAGA
1 TTTCTAAATCAGAATCAAGA
67620701 CAGGGGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 9 0.50
21 7 0.39
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (21 bp):
TTTCTAAATCAGAATCAAGAA
Found at i:67625530 original size:38 final size:38
Alignment explanation
Indices: 67625488--67625597 Score: 105
Period size: 38 Copynumber: 2.9 Consensus size: 38
67625478 ACGTAAAGCG
* *
67625488 CATCCTGACGCATAAAGCGCATACTGGCACATGAAGTA
1 CATCCTGACGCATAAAGTGCATACTGGCACATGAAATA
** * * ** *
67625526 CATCCTGAAACACAAAGTGCATCCTGGCACACAAAATG
1 CATCCTGACGCATAAAGTGCATACTGGCACATGAAATA
*
67625564 CAT-CTTAGCGCATAAAGTGCATATCTGGCACATG
1 CATCCTGA-CGCATAAAGTGCATA-CTGGCACATG
67625598 GACTGCATTT
Statistics
Matches: 54, Mismatches: 16, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
37 3 0.06
38 43 0.80
39 8 0.15
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (38 bp):
CATCCTGACGCATAAAGTGCATACTGGCACATGAAATA
Found at i:67625548 original size:19 final size:19
Alignment explanation
Indices: 67625521--67625567 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
67625511 CTGGCACATG
*
67625521 AAGTACATCCTGAAACACA
1 AAGTGCATCCTGAAACACA
**
67625540 AAGTGCATCCTGGCACACA
1 AAGTGCATCCTGAAACACA
*
67625559 AAATGCATC
1 AAGTGCATC
67625568 TTAGCGCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.40, C:0.28, G:0.15, T:0.17
Consensus pattern (19 bp):
AAGTGCATCCTGAAACACA
Found at i:67625584 original size:19 final size:19
Alignment explanation
Indices: 67625535--67625585 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
67625525 ACATCCTGAA
*
67625535 ACACAAAGTGCATCCTGGC
1 ACACAAAGTGCATCCTAGC
* *
67625554 ACACAAAATGCATCTTAGC
1 ACACAAAGTGCATCCTAGC
* *
67625573 GCATAAAGTGCAT
1 ACACAAAGTGCAT
67625586 ATCTGGCACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (19 bp):
ACACAAAGTGCATCCTAGC
Found at i:67625673 original size:58 final size:58
Alignment explanation
Indices: 67625540--67625682 Score: 144
Period size: 58 Copynumber: 2.5 Consensus size: 58
67625530 CTGAAACACA
* * * * * * *
67625540 AAGTGCATCCTGGCACACAAAATGCATCTTAGCGCATAAAGTGCATATCTGGCACATG
1 AAGTGCATCCTGGCACACAAAGTGCATCCTAGCGCACAAAGCGCATATATGGAAAATG
* * ** ** *
67625598 GACTGCATTTTAACACACAAAGTGCATCCTAGCGCACGAAGCGCATATATGGAAAATG
1 AAGTGCATCCTGGCACACAAAGTGCATCCTAGCGCACAAAGCGCATATATGGAAAATG
*
67625656 AAGTGCATCCTGGCACAC-AGGTGCATC
1 AAGTGCATCCTGGCACACAAAGTGCATC
67625683 TTGGGGCATA
Statistics
Matches: 64, Mismatches: 21, Indels: 1
0.74 0.24 0.01
Matches are distributed among these distances:
57 8 0.12
58 56 0.88
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (58 bp):
AAGTGCATCCTGGCACACAAAGTGCATCCTAGCGCACAAAGCGCATATATGGAAAATG
Found at i:67626906 original size:30 final size:30
Alignment explanation
Indices: 67626854--67626913 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
67626844 TCCATTTCTT
67626854 CTAGATTGATACTTAACGTTTTTTT-TGTC
1 CTAGATTGATACTTAACGTTTTTTTCTGTC
* *
67626883 CTAGATTGGTACCTTAACTTTTTTTTCTGTC
1 CTAGATTGATA-CTTAACGTTTTTTTCTGTC
67626914 AACTAAATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 10 0.37
30 13 0.48
31 4 0.15
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (30 bp):
CTAGATTGATACTTAACGTTTTTTTCTGTC
Found at i:67627052 original size:32 final size:33
Alignment explanation
Indices: 67627001--67627063 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
67626991 GATGTCATAA
*
67627001 TTTTAAAAATTATATTAAAAATAATAAAAATATT
1 TTTTAAAAATTATAATAAAAATAA-AAAAATATT
*
67627035 TTTTAAAAA-TA-AATAAAAATTAAAAAATA
1 TTTTAAAAATTATAATAAAAATAAAAAAATA
67627064 ATAAACTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 7 0.26
32 9 0.33
33 2 0.07
34 9 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (33 bp):
TTTTAAAAATTATAATAAAAATAAAAAAATATT
Found at i:67631170 original size:19 final size:18
Alignment explanation
Indices: 67631148--67631189 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
67631138 ACCGTGATAT
67631148 TTTAAG-AAAATAGTTCGTG
1 TTTAAGAAAAAT-GTT-GTG
*
67631167 TTTAGGAAAAATGTTGTG
1 TTTAAGAAAAATGTTGTG
67631185 TTTAA
1 TTTAA
67631190 TAATAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 7 0.35
19 8 0.40
20 5 0.25
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.40
Consensus pattern (18 bp):
TTTAAGAAAAATGTTGTG
Found at i:67633582 original size:25 final size:24
Alignment explanation
Indices: 67633535--67633587 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
67633525 CACAAAAGTA
*
67633535 GCTCTTTATGAGCATCCTGATATAG
1 GCTCTTTATGAGCATCCTAATAT-G
* * *
67633560 GCTCTTTTTGAGCTTCTTAATATG
1 GCTCTTTATGAGCATCCTAATATG
67633584 GCTC
1 GCTC
67633588 GCTTAAACTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGCATCCTAATATG
Found at i:67636105 original size:18 final size:19
Alignment explanation
Indices: 67636070--67636107 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
67636060 AATAAATTTC
*
67636070 AAAAATTCAAAATGTTTATA
1 AAAAAATCAAAA-GTTTATA
67636090 AAAAAATCAAAA-TTTATA
1 AAAAAATCAAAAGTTTATA
67636108 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAAAATCAAAAGTTTATA
Found at i:67644072 original size:41 final size:41
Alignment explanation
Indices: 67644022--67644197 Score: 271
Period size: 41 Copynumber: 4.3 Consensus size: 41
67644012 AATTCATCAT
* *
67644022 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67644063 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67644104 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
67644145 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
67644186 ATTCATATCACC
1 ATTCAGATCACC
67644198 AATTCCAAAC
Statistics
Matches: 122, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 122 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:67644165 original size:82 final size:82
Alignment explanation
Indices: 67644028--67644197 Score: 340
Period size: 82 Copynumber: 2.1 Consensus size: 82
67644018 TCATATTCGG
67644028 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
67644093 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
67644110 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
67644175 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
67644192 ATCACC
1 ATCACC
67644198 AATTCCAAAC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 88 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:67644433 original size:19 final size:19
Alignment explanation
Indices: 67644409--67644445 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
67644399 TTGTTCGATC
*
67644409 CACACATATATATATATTA
1 CACACATATACATATATTA
67644428 CACACATATACATATATT
1 CACACATATACATATATT
67644446 CGCACATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (19 bp):
CACACATATACATATATTA
Found at i:67647100 original size:12 final size:12
Alignment explanation
Indices: 67647083--67647189 Score: 60
Period size: 12 Copynumber: 9.6 Consensus size: 12
67647073 AATAATTTTA
67647083 TATTAAAATTAT
1 TATTAAAATTAT
67647095 TATT-AAA-TAT
1 TATTAAAATTAT
67647105 TATTAATAATTA-
1 TATTAA-AATTAT
*
67647117 TATTAATAA-TGT
1 TATTAA-AATTAT
67647129 TATTAAAA-TAT
1 TATTAAAATTAT
67647140 ATATT---ATT-T
1 -TATTAAAATTAT
67647149 TATT-AAATTA-
1 TATTAAAATTAT
67647159 TATTTAATAATTA-
1 TA-TTAA-AATTAT
67647172 TATTAAAA-TAT
1 TATTAAAATTAT
*
67647183 GATTAAA
1 TATTAAA
67647190 TTGTTTATTT
Statistics
Matches: 79, Mismatches: 3, Indels: 27
0.72 0.03 0.25
Matches are distributed among these distances:
8 4 0.05
9 2 0.03
10 15 0.19
11 19 0.24
12 30 0.38
13 9 0.11
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.50
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:67647397 original size:44 final size:46
Alignment explanation
Indices: 67647327--67647420 Score: 131
Period size: 44 Copynumber: 2.1 Consensus size: 46
67647317 ATTACTACAT
*
67647327 CATTCCATTCAACCAAACATAAGAATT-CT-ATTACAGTTCTATTC
1 CATTCCATTCAACCAAACATAAGAATTACTGATTACAGCTCTATTC
* *
67647371 CATTCCATTTAACCAAACAGT-TGAATTACTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACA-TAAGAATTACTGATTACAGCTCTATTC
67647417 CATT
1 CATT
67647421 ACAGCTCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.35
Consensus pattern (46 bp):
CATTCCATTCAACCAAACATAAGAATTACTGATTACAGCTCTATTC
Found at i:67647423 original size:16 final size:16
Alignment explanation
Indices: 67647402--67647456 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
67647392 TGAATTACTG
67647402 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
67647418 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
67647434 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
67647450 ATTACAG
1 ATTACAG
67647457 TGAACCAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:67647777 original size:40 final size:40
Alignment explanation
Indices: 67647728--67647803 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
67647718 TCTTTCTGCA
67647728 AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAAGGCC
1 AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAAGGCC
* *
67647768 AATCTCATTCCTCTCTTTCTCTCTTTCTTAGGCAAA
1 AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAA
67647804 TCTCATTCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.18, C:0.34, G:0.08, T:0.39
Consensus pattern (40 bp):
AATCTCATTCCTCCCTTTCTCTCTTTCTCAGGCAAAGGCC
Found at i:67647806 original size:34 final size:34
Alignment explanation
Indices: 67647707--67647815 Score: 116
Period size: 40 Copynumber: 3.1 Consensus size: 34
67647697 TCTTCTTTCT
*
67647707 CTCTCTCTCTCTCTTTC-T--GCAAATCTCATTC
1 CTCTCTTTCTCTCTTTCTTAGGCAAATCTCATTC
* *
67647738 CTCCCTTTCTCTCTTTCTCAGGCAAAGGCCAATCTCATTC
1 CTCTCTTTCTCTCTTTCTTAGGC--A----AATCTCATTC
67647778 CTCTCTTTCTCTCTTTCTTAGGCAAATCTCATTC
1 CTCTCTTTCTCTCTTTCTTAGGCAAATCTCATTC
67647812 CTCT
1 CTCT
67647816 TCGCAAGGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
31 15 0.23
34 16 0.25
36 1 0.02
38 1 0.02
40 31 0.48
ACGTcount: A:0.15, C:0.37, G:0.06, T:0.42
Consensus pattern (34 bp):
CTCTCTTTCTCTCTTTCTTAGGCAAATCTCATTC
Found at i:67653929 original size:9 final size:9
Alignment explanation
Indices: 67653915--67653946 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
67653905 AACTAGGTGA
67653915 ATTTTGTTT
1 ATTTTGTTT
67653924 ATTTTGTTT
1 ATTTTGTTT
67653933 ATTTTGTTT
1 ATTTTGTTT
67653942 ATTTT
1 ATTTT
67653947 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:67656267 original size:19 final size:19
Alignment explanation
Indices: 67656243--67656279 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
67656233 TCCAAACACC
67656243 AGAAAAGTAAATCATTTTT
1 AGAAAAGTAAATCATTTTT
*
67656262 AGAAAAGTAAATTATTTT
1 AGAAAAGTAAATCATTTT
67656280 CCAGAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.38
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTTT
Found at i:67660653 original size:15 final size:16
Alignment explanation
Indices: 67660625--67660654 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67660615 TCGGGATATT
67660625 ATTATTAGAAAAATAA
1 ATTATTAGAAAAATAA
67660641 ATTATTA-AAAAATA
1 ATTATTAGAAAAATA
67660655 TAAATAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATTATTAGAAAAATAA
Found at i:67660659 original size:17 final size:16
Alignment explanation
Indices: 67660625--67660659 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
67660615 TCGGGATATT
*
67660625 ATTATTAGAAAAATAA
1 ATTATTAAAAAAATAA
67660641 ATTATTAAAAAATATAA
1 ATTATTAAAAAA-ATAA
67660658 AT
1 AT
67660660 AAAGAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (16 bp):
ATTATTAAAAAAATAA
Found at i:67664182 original size:17 final size:17
Alignment explanation
Indices: 67664151--67664184 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
67664141 GTGTATGTTA
67664151 ATTTGTTTTATTTATTT
1 ATTTGTTTTATTTATTT
67664168 ATTT-TTTTATATTATTT
1 ATTTGTTTTAT-TTATTT
67664185 TCATTCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
ATTTGTTTTATTTATTT
Found at i:67665510 original size:20 final size:19
Alignment explanation
Indices: 67665485--67665522 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
67665475 AAAATTTAAA
*
67665485 TTTAAATATATAAACTATAT
1 TTTAAATAT-TAAAATATAT
67665505 TTTAAATATTAAAATATA
1 TTTAAATATTAAAATATA
67665523 ACCAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTAAATATTAAAATATAT
Found at i:67669651 original size:42 final size:42
Alignment explanation
Indices: 67669600--67669697 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 42
67669590 CTTAGTCTCA
* *
67669600 CACACTAAGTGCCATATATATAGCCGAAGATA-TTCCAATTCG
1 CACACTAAGTGCCATATATATAGCCGAAGATACCT-CAATACG
* * * *
67669642 CACACTAAGTG-C-TTTATATAGCTGAAGCTACCTCGATACG
1 CACACTAAGTGCCATATATATAGCCGAAGATACCTCAATACG
67669682 CACACTAAGTGCCATA
1 CACACTAAGTGCCATA
67669698 ATCGATTCGT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
40 31 0.67
41 3 0.07
42 12 0.26
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (42 bp):
CACACTAAGTGCCATATATATAGCCGAAGATACCTCAATACG
Found at i:67673261 original size:58 final size:57
Alignment explanation
Indices: 67673184--67673323 Score: 149
Period size: 57 Copynumber: 2.4 Consensus size: 57
67673174 TTATAGAAAT
** * * *
67673184 GATTTAGCCCAGACGGGTAATCCTGATTTAATCCC-TCTCGAGCATATGTTACA-ATTAG
1 GATTTAGCTTAGACTGGTAATCCTGATTGAA-CCCTTCT-GAGCATATGTTACATA-AAG
* * * *
67673242 GATTTAGCTTAGATTGGTAATCCTAATTGAACTCTTCTGAGCATCTGTTACATAAAG
1 GATTTAGCTTAGACTGGTAATCCTGATTGAACCCTTCTGAGCATATGTTACATAAAG
*
67673299 GATTTAGCTTGGACTGGTAATCCTG
1 GATTTAGCTTAGACTGGTAATCCTG
67673324 TAATATGATA
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
57 39 0.57
58 29 0.43
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (57 bp):
GATTTAGCTTAGACTGGTAATCCTGATTGAACCCTTCTGAGCATATGTTACATAAAG
Found at i:67674844 original size:52 final size:51
Alignment explanation
Indices: 67674696--67674847 Score: 153
Period size: 52 Copynumber: 2.9 Consensus size: 51
67674686 ATAACATACT
* * * *
67674696 GATGCTATATCCCAGATATGGTCTTATACGGAATCACATTATCACATCACACC
1 GATGCCATAGCCCAGCTATGGTCTTATAAGGAA-CACA-TATCACATCACACC
* * *** *
67674749 GATGCCATAGCCCAACTATGGTCTTATACAGGAACTCGA-ATCACATTGTATC
1 GATGCCATAGCCCAGCTATGGTCTTATA-AGGAACAC-ATATCACATCACACC
*
67674801 GATGCCATAGCCCAGCTATGGTCTTATATGGAAGCACATATCACATC
1 GATGCCATAGCCCAGCTATGGTCTTATAAGGAA-CACATATCACATC
67674848 TTTTCCGTCA
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
51 5 0.06
52 45 0.56
53 26 0.32
54 5 0.06
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (51 bp):
GATGCCATAGCCCAGCTATGGTCTTATAAGGAACACATATCACATCACACC
Found at i:67680924 original size:21 final size:20
Alignment explanation
Indices: 67680885--67680924 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
67680875 TTTTGAAACA
*
67680885 GGGCACATGCCCGTATGGAT
1 GGGCACATGCCAGTATGGAT
*
67680905 GGGCAACATGCCAGTGTGGA
1 GGGC-ACATGCCAGTATGGA
67680925 ACTTGAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.17
Consensus pattern (20 bp):
GGGCACATGCCAGTATGGAT
Found at i:67682157 original size:47 final size:47
Alignment explanation
Indices: 67682088--67682351 Score: 189
Period size: 47 Copynumber: 5.7 Consensus size: 47
67682078 GTATAATGCT
*
67682088 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGCC
* * * * *
67682135 GATGCCATGTCCCAGACATGGTCTTACATTGACT-ATCGAAATCAAGGGC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATC--CATCAA-GCC
* * *
67682184 GACGCCATGTCCCAGACATGGTCCTCT-CAC---AT-ATCCAT---GCC
1 GATGCCATGTCCCAAACATGGT-CT-TACACTGGCTCATCCATCAAGCC
* * * * *
67682225 GATGCCATGGCCCAAACATGGTCTTACACTGACACAT-C-TCGTAGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATC-AAGCC
* *
67682271 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTTAT-C-TCAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTC--ATCCATCAA-GCC
*
67682317 GATGCCATGTCCCAAACATGGTTTTACACTGGCTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTC
67682352 TCGTAATATG
Statistics
Matches: 172, Mismatches: 26, Indels: 37
0.73 0.11 0.16
Matches are distributed among these distances:
39 1 0.01
40 5 0.03
41 21 0.12
42 1 0.01
43 1 0.01
44 14 0.08
45 15 0.09
46 20 0.12
47 48 0.28
48 18 0.10
49 23 0.13
50 4 0.02
51 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGCC
Found at i:67682310 original size:46 final size:48
Alignment explanation
Indices: 67682220--67682352 Score: 143
Period size: 46 Copynumber: 2.9 Consensus size: 48
67682210 TCACATATCC
* *
67682220 ATGCCGATGCCATGGCCCAAACATGGTCTTACACT-GACAC--ATCTC-
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTTATCTCA
* * *
67682265 GTAGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTTATCTCA
1 AT-GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATCTCA
* *
67682312 ATGCCGATGCCATGTCCCAAACATGGTTTTACACTGGCTCT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT
67682353 CGTAATATGG
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
44 12 0.17
45 14 0.20
46 17 0.24
47 14 0.20
48 14 0.20
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATCTCA
Found at i:67683807 original size:20 final size:20
Alignment explanation
Indices: 67683782--67683823 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
67683772 TAGAAAATAT
*
67683782 AGTAGTCATACTTGCTGAAA
1 AGTAGTCATACTTGCCGAAA
67683802 AGTAGTCATACTTGCCGAAA
1 AGTAGTCATACTTGCCGAAA
67683822 AG
1 AG
67683824 AGTATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (20 bp):
AGTAGTCATACTTGCCGAAA
Found at i:67685265 original size:32 final size:32
Alignment explanation
Indices: 67685218--67685281 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
67685208 GCCTTTCAAG
* *
67685218 CCTACCGTATTAAGAATTATCCCTTAAAAACT
1 CCTACCATATGAAGAATTATCCCTTAAAAACT
67685250 CCTACCATATGAAGAATTATCCCTTAAAAACT
1 CCTACCATATGAAGAATTATCCCTTAAAAACT
67685282 TACTTTGAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.30
Consensus pattern (32 bp):
CCTACCATATGAAGAATTATCCCTTAAAAACT
Found at i:67691318 original size:26 final size:24
Alignment explanation
Indices: 67691281--67691343 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
67691271 AATAAATTCA
* *
67691281 AAAAATGGAAAAATGGGATTTTTTTT
1 AAAAATGTAAAAAT--GATATTTTTT
*
67691307 AAAAATGTAAAAATTATATTTTTT
1 AAAAATGTAAAAATGATATTTTTT
*
67691331 AAAAATTTAAAAA
1 AAAAATGTAAAAA
67691344 AAAATCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 20 0.61
26 13 0.39
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (24 bp):
AAAAATGTAAAAATGATATTTTTT
Found at i:67691980 original size:14 final size:14
Alignment explanation
Indices: 67691960--67691995 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
67691950 GCTTTAACAC
67691960 AAAAAATAATAAAT
1 AAAAAATAATAAAT
* *
67691974 TAAAAATAATAACT
1 AAAAAATAATAAAT
67691988 AAAAAATA
1 AAAAAATA
67691996 CATCTCAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAAATAATAAAT
Found at i:67696795 original size:39 final size:39
Alignment explanation
Indices: 67696732--67696836 Score: 149
Period size: 39 Copynumber: 2.7 Consensus size: 39
67696722 AGACTTTTGC
* *
67696732 CCGGACATATTTCCAGCA-AGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACA-TAGCCTGCGGACCTTAAGT
* *
67696771 CCGGTTATAATTCTAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
67696810 CCGGATATAATTCCAGCATATAGCCTG
1 CCGGATATAATTCCAGCACATAGCCTG
67696837 TTTGTCTTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 57 0.98
40 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:67700814 original size:49 final size:49
Alignment explanation
Indices: 67700710--67700823 Score: 133
Period size: 49 Copynumber: 2.3 Consensus size: 49
67700700 ACATGGGAAG
* * * *
67700710 ACCACACGCCCGTGTCTATTTAACAGATTGTAACATAGCCTAAGCCCAC
1 ACCACACGGCCGTGTCTATTTAACAGACTCTAACACAGCCTAAGCCCAC
* *
67700759 ACCACACGGCCGTGTCTATTTAGCAGACTCTAAACACGGCCTAAG-CCAC
1 ACCACACGGCCGTGTCTATTTAACAGACTCT-AACACAGCCTAAGCCCAC
*
67700808 -CTCACACGGGCGTGTC
1 AC-CACACGGCCGTGTC
67700824 ACACGGGCGT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 44 0.79
50 11 0.20
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.20
Consensus pattern (49 bp):
ACCACACGGCCGTGTCTATTTAACAGACTCTAACACAGCCTAAGCCCAC
Found at i:67700827 original size:13 final size:13
Alignment explanation
Indices: 67700809--67700836 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67700799 CTAAGCCACC
67700809 TCACACGGGCGTG
1 TCACACGGGCGTG
67700822 TCACACGGGCGTG
1 TCACACGGGCGTG
67700835 TC
1 TC
67700837 CCTGTTGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:67702265 original size:24 final size:25
Alignment explanation
Indices: 67702238--67702285 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 25
67702228 TAATTAGGAT
67702238 GTAAATTTTTAGAAAT-GTCATTTC
1 GTAAATTTTTAGAAATGGTCATTTC
67702262 GTAAATTTTTAGAAATGGTCATTT
1 GTAAATTTTTAGAAATGGTCATTT
67702286 TGTGTATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (25 bp):
GTAAATTTTTAGAAATGGTCATTTC
Found at i:67709229 original size:79 final size:82
Alignment explanation
Indices: 67709118--67709302 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
67709108 GCTACTCGTT
* *
67709118 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
67709181 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
67709198 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
67709261 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
67709278 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67709303 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:67709302 original size:40 final size:40
Alignment explanation
Indices: 67709099--67709302 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
67709089 CGGAATTTAA
** *
67709099 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67709139 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67709179 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67709218 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
67709258 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67709298 CCGGA
1 CCGGA
67709303 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67717169 original size:79 final size:82
Alignment explanation
Indices: 67717058--67717242 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
67717048 GCTACTCGTT
* *
67717058 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
67717121 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
67717138 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
67717201 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
67717218 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67717243 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:67717242 original size:40 final size:40
Alignment explanation
Indices: 67717039--67717242 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
67717029 CGGAATTTAA
** *
67717039 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67717079 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67717119 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67717158 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
67717198 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67717238 CCGGA
1 CCGGA
67717243 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67726653 original size:22 final size:23
Alignment explanation
Indices: 67726628--67726673 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
67726618 CAACCAAATC
67726628 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
67726650 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
67726673 A
1 A
67726674 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:67726679 original size:23 final size:23
Alignment explanation
Indices: 67726635--67726679 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
67726625 ATCAATTCAA
*
67726635 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
67726658 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
67726680 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:67737104 original size:22 final size:23
Alignment explanation
Indices: 67737079--67737124 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
67737069 CAACCAAATC
67737079 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
67737101 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
67737124 A
1 A
67737125 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:67737130 original size:23 final size:23
Alignment explanation
Indices: 67737086--67737130 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
67737076 ATCAATTCAA
*
67737086 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
67737109 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
67737131 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:67745255 original size:36 final size:37
Alignment explanation
Indices: 67745183--67745260 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
67745173 TTATTACGAA
* *
67745183 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
67745220 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
67745256 GTCTT
1 GTCTT
67745261 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:67745457 original size:47 final size:47
Alignment explanation
Indices: 67745379--67746028 Score: 1142
Period size: 47 Copynumber: 13.7 Consensus size: 47
67745369 CCCTTCGGGA
* * * * * *
67745379 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67745426 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745473 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745520 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745614 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745663 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745712 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745759 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745808 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745855 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745902 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67745949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67745996 CTTATCTCATATATGCA-TTTCACA-TCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
67746029 AGAATCCTAA
Statistics
Matches: 587, Mismatches: 12, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
45 9 0.02
46 7 0.01
47 428 0.73
49 143 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67748371 original size:85 final size:84
Alignment explanation
Indices: 67748205--67748382 Score: 338
Period size: 85 Copynumber: 2.1 Consensus size: 84
67748195 TATTTTATTG
*
67748205 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCAACATGTTTATGACATGTTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCAACATGTTTATGACATGTTTTT
67748270 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
67748289 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTA-CCCAACATGTTTATGACATGTTTT
67748354 TAGCCATAACATCTTGTCCA
65 TAGCCATAACATCTTGTCCA
67748374 CCCATGCTC
1 CCCATGCTC
67748383 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 39 0.42
85 53 0.58
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (84 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCA
Found at i:67750046 original size:40 final size:40
Alignment explanation
Indices: 67750014--67750317 Score: 453
Period size: 40 Copynumber: 7.8 Consensus size: 40
67750004 CCAGCATGAT
* * *
67750014 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
67750054 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
67750094 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
67750134 TGCTCTTCGGGA-TTA--CCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
67750171 TGCTCTTC-GAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
67750210 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
67750250 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC---
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
67750287 TGCTCTTC-GGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
67750318 CTCAATTCTC
Statistics
Matches: 243, Mismatches: 17, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
36 25 0.10
37 40 0.16
39 33 0.14
40 145 0.60
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:67750225 original size:116 final size:117
Alignment explanation
Indices: 67750014--67750317 Score: 438
Period size: 116 Copynumber: 2.6 Consensus size: 117
67750004 CCAGCATGAT
* * * **
67750014 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTA-CCCGGATATATCACTAGCACGAATGCTCTTC-GGACTTAGC-CGGATA
*
67750079 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
63 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
67750134 TGCTCTTCGGGA-TTA-CCGGATATATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATATA
1 TGCTCTTCGGGACTTACCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAG-CCGGATATA
* *
67750197 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
67750250 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCAC---TGCTCTTCGGACTTAGCCCGGATAT
1 TGCTCTTCGGGACTTA-CCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAG-CCGGATAT
67750312 ATCACT
64 ATCACT
67750318 CTCAATTCTC
Statistics
Matches: 169, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
116 104 0.62
117 32 0.19
119 21 0.12
120 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (117 bp):
TGCTCTTCGGGACTTACCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCGGATATAT
CACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:67751583 original size:36 final size:37
Alignment explanation
Indices: 67751511--67751588 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
67751501 TTATTACGAA
* *
67751511 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
67751548 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
67751584 GTCTT
1 GTCTT
67751589 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:67751784 original size:47 final size:47
Alignment explanation
Indices: 67751707--67752261 Score: 934
Period size: 47 Copynumber: 11.7 Consensus size: 47
67751697 CCCTTCGGGA
* * * * * *
67751707 CTTATCACAT-TTTACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67751753 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67751800 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67751847 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67751894 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67751941 CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67751988 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67752035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67752084 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67752133 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67752180 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67752227 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
67752262 AGAATCCTAA
Statistics
Matches: 489, Mismatches: 16, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
46 9 0.02
47 384 0.79
49 96 0.20
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67752301 original size:239 final size:235
Alignment explanation
Indices: 67751707--67752261 Score: 830
Period size: 239 Copynumber: 2.3 Consensus size: 235
67751697 CCCTTCGGGA
* * * ** * * * *
67751707 CTTATCACAT-TTTACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATACAC
* * * *
67751771 TTTCACATTCATCACATCGGCCATTAGGCCTTATC--ACATATATACACTTTCACATTCATCACA
66 TTTCACATCCATCACATCAG-CA-TAGGCCTAATCAAATATATATACACTTTCACATTCATCACA
67751834 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
67751899 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67751941 CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATACAC
* * * *
67752006 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATCCATCACATCAG-CA-TAGGCCTAATCAAATATATATACACTTTCACATTCATCACA
67752071 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
129 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
67752136 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
192 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
67752180 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATACAC
67752244 TGTTCACATCCATCACAT
66 T-TTCACATCCATCACAT
67752262 AGAATCCTAA
Statistics
Matches: 300, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
234 10 0.03
235 80 0.27
237 48 0.16
238 1 0.00
239 161 0.54
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (235 bp):
CTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATACAC
TTTCACATCCATCACATCAGCATAGGCCTAATCAAATATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67754571 original size:85 final size:85
Alignment explanation
Indices: 67754440--67754618 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
67754430 TATTTTATTG
* *
67754440 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACTCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
67754505 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
67754525 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
67754590 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
67754610 CCCATGCTC
1 CCCATGCTC
67754619 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:67757827 original size:18 final size:17
Alignment explanation
Indices: 67757774--67757828 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
67757764 TGAATAAATT
67757774 ACTCATCTTAGTTAAGTGA
1 ACTCATCTTAGTTAA-T-A
**
67757793 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
67757810 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
67757828 A
1 A
67757829 ATGAGTTGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:67758204 original size:48 final size:49
Alignment explanation
Indices: 67758130--67758222 Score: 118
Period size: 48 Copynumber: 1.9 Consensus size: 49
67758120 GCTCACAATC
* * *
67758130 GTTACAAATTCAATAAAGAGGTTTTTCAAGT-GTTTTCGGTTACATGCT
1 GTTACAAATTCAATAAAGAGGCTTTTCAAGTCATTTTCGATTACATGCT
* *
67758178 GTTACACATTCAGA-AAAGTGGCTTTTCAAGTCATTTTCGATTACA
1 GTTACAAATTCA-ATAAAGAGGCTTTTCAAGTCATTTTCGATTACA
67758223 AGAAAATGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
48 26 0.68
49 12 0.32
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (49 bp):
GTTACAAATTCAATAAAGAGGCTTTTCAAGTCATTTTCGATTACATGCT
Found at i:67762305 original size:19 final size:19
Alignment explanation
Indices: 67762276--67762326 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
67762266 AATAAATTAC
67762276 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
* *
67762295 TTATTTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
67762314 TCATCTTAGTTAA
1 TCATCTTAGTTAA
67762327 CAACTAATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (19 bp):
TCATCTTAGTTAATTGAGT
Found at i:67762720 original size:48 final size:49
Alignment explanation
Indices: 67762649--67762741 Score: 143
Period size: 48 Copynumber: 1.9 Consensus size: 49
67762639 GCTCACAACC
*
67762649 GTTACAAATTCAATAAAGAGGCTTTTCAAGT-GTTTTCGATTACATGCT
1 GTTACAAATTCAATAAAGAGGCTTTTCAAGTCATTTTCGATTACATGCT
* * *
67762697 GTTACACATTCAATAAAGTGGCTTTTCAAGTCATTTTCGGTTACA
1 GTTACAAATTCAATAAAGAGGCTTTTCAAGTCATTTTCGATTACA
67762742 AGCAAGGGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 29 0.73
49 11 0.28
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (49 bp):
GTTACAAATTCAATAAAGAGGCTTTTCAAGTCATTTTCGATTACATGCT
Found at i:67772301 original size:28 final size:29
Alignment explanation
Indices: 67772268--67772379 Score: 122
Period size: 29 Copynumber: 3.9 Consensus size: 29
67772258 TCTATATCTA
* * *
67772268 GCCCATTAAG-CCAAGTCATATTCATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
*
67772296 GCCCATTAGGCCCAAATCACCTGT-ATATG
1 GCCCATTAGGCCCAAATCACAT-TCATATG
* *
67772325 GCCCATTGGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* *
67772354 GCCCGTTAGGCCC-AGTCACATTCATA
1 GCCCATTAGGCCCAAATCACATTCATA
67772380 ATCATGCTCA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 21 0.30
29 49 0.69
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTCATATG
Found at i:67772613 original size:16 final size:16
Alignment explanation
Indices: 67772572--67772609 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
67772562 GTAGCCAAAC
67772572 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
**
67772588 TTTCAACTTTTCGGCA
1 TTTCGGCTTTTCGGCA
67772604 -TTCGGC
1 TTTCGGC
67772610 CTTTGCTGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 1
0.78 0.17 0.04
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.42
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:67772699 original size:38 final size:38
Alignment explanation
Indices: 67772648--67772727 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
67772638 GTATGTACAC
67772648 ACCTGGTAAGCAAGCGTGCTACGATTCCCTTAGTCCAA
1 ACCTGGTAAGCAAGCGTGCTACGATTCCCTTAGTCCAA
**
67772686 ACCTGGTAAGCAAGCGTGCTGTGATTCCCTTAGTCCAA
1 ACCTGGTAAGCAAGCGTGCTACGATTCCCTTAGTCCAA
67772724 ACCT
1 ACCT
67772728 ACAAACGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (38 bp):
ACCTGGTAAGCAAGCGTGCTACGATTCCCTTAGTCCAA
Found at i:67773714 original size:16 final size:16
Alignment explanation
Indices: 67773689--67773720 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67773679 AAGTTCAGGA
67773689 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
*
67773705 TTTCAGGATTTTTGGG
1 TTTCAAGATTTTTGGG
67773721 GCATTACAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:67775476 original size:270 final size:270
Alignment explanation
Indices: 67775069--67775878 Score: 1593
Period size: 270 Copynumber: 3.0 Consensus size: 270
67775059 ACTTAAGGAT
*
67775069 GGAGATAAAGTTTTATTAGATGCCACAGATCCTCATATTTTCATTACCAAACCGAATGAAGAAAT
1 GGAGATAAAGTTTTATTAGATGCCACAGATCCTCATATTGTCATTACCAAACCGAATGAAGAAAT
67775134 CCCTCTTCTAGTGCTTAGCATTTTCCCATTCGGTACAGTCGAGGTAAATTATCCTAAGTTCGGCA
66 CCCTCTTCTAGTGCTTAGCATTTTCCCATTCGGTACAGTCGAGGTAAATTATCCTAAGTTCGGCA
*
67775199 GTTTTAAGGTAAACAATACCCGCCTAAAATCTTATTTTGATGAGATTCACAGTAGGAATGAGGAG
131 CTTTTAAGGTAAACAATACCCGCCTAAAATCTTATTTTGATGAGATTCACAGTAGGAATGAGGAG
67775264 TATAAACTCCTCAAACCACCATGACCATTTAATGGAAAGGTAAGTCGAACTTAGACTATAAATAA
196 TATAAACTCCTCAAACCACCATGACCATTTAATGGAAAGGTAAGTCGAACTTAGACTATAAATAA
67775329 ACGCTTCTCA
261 ACGCTTCTCA
67775339 GGAGATAAAGTTTTATTAGATGCCACAGATCCTCATATTGTCATTACCAAACCGAATGAAGAAAT
1 GGAGATAAAGTTTTATTAGATGCCACAGATCCTCATATTGTCATTACCAAACCGAATGAAGAAAT
67775404 CCCTCTTCTAGTGCTTAGCATTTTCCCATTCGGTACAGTCGAGGTAAATTATCCTAAGTTCGGCA
66 CCCTCTTCTAGTGCTTAGCATTTTCCCATTCGGTACAGTCGAGGTAAATTATCCTAAGTTCGGCA
67775469 CTTTTAAGGTAAACAATACCCGCCTAAAATCTTATTTTGATGAGATTCACAGTAGGAATGAGGAG
131 CTTTTAAGGTAAACAATACCCGCCTAAAATCTTATTTTGATGAGATTCACAGTAGGAATGAGGAG
67775534 TATAAACTCCTCAAACCACCATGACCATTTAATGGAAAGGTAAGTCGAACTTAGACTATAAATAA
196 TATAAACTCCTCAAACCACCATGACCATTTAATGGAAAGGTAAGTCGAACTTAGACTATAAATAA
67775599 ACGCTTCTCA
261 ACGCTTCTCA
*
67775609 GGAGATAAAGTTTTATTAGATGCCACAGATCCTCATATTGTCATTACCAAATCGAATGAAGAAAT
1 GGAGATAAAGTTTTATTAGATGCCACAGATCCTCATATTGTCATTACCAAACCGAATGAAGAAAT
67775674 CCCTCTTCTAGTGCTTAGCATTTTCCCATTCGGTACAGTCGAGGTAAATTATCCTAAGTTCGGCA
66 CCCTCTTCTAGTGCTTAGCATTTTCCCATTCGGTACAGTCGAGGTAAATTATCCTAAGTTCGGCA
67775739 CTTTTAAGGTAAACAATACCCGCCTAAAATCTTATTTTGATGAGATTCACAGTAGGAATGAGGAG
131 CTTTTAAGGTAAACAATACCCGCCTAAAATCTTATTTTGATGAGATTCACAGTAGGAATGAGGAG
67775804 TATAAACTCCTCAAACCACCATGACCATTTAATGGAAAGGTAAGTCGAACTTAGACTATAAATAA
196 TATAAACTCCTCAAACCACCATGACCATTTAATGGAAAGGTAAGTCGAACTTAGACTATAAATAA
67775869 ACGCTTCTCA
261 ACGCTTCTCA
67775879 AGGGGCAATC
Statistics
Matches: 537, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
270 537 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (270 bp):
GGAGATAAAGTTTTATTAGATGCCACAGATCCTCATATTGTCATTACCAAACCGAATGAAGAAAT
CCCTCTTCTAGTGCTTAGCATTTTCCCATTCGGTACAGTCGAGGTAAATTATCCTAAGTTCGGCA
CTTTTAAGGTAAACAATACCCGCCTAAAATCTTATTTTGATGAGATTCACAGTAGGAATGAGGAG
TATAAACTCCTCAAACCACCATGACCATTTAATGGAAAGGTAAGTCGAACTTAGACTATAAATAA
ACGCTTCTCA
Found at i:67780392 original size:36 final size:36
Alignment explanation
Indices: 67780345--67780420 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
67780335 GAGCCTAAGT
67780345 TTAGTCCAATTCAGAAAAGGCCAATTTTAAGGGTTC
1 TTAGTCCAATTCAGAAAAGGCCAATTTTAAGGGTTC
67780381 TTAGTCCAATTCAGAAAAGGCCAATTTTAAGGGTTC
1 TTAGTCCAATTCAGAAAAGGCCAATTTTAAGGGTTC
67780417 TTAG
1 TTAG
67780421 GCATTCCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (36 bp):
TTAGTCCAATTCAGAAAAGGCCAATTTTAAGGGTTC
Found at i:67782041 original size:18 final size:18
Alignment explanation
Indices: 67782013--67782059 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
67782003 CATATATGTT
67782013 TCTGTAATCTGAATCTAGA
1 TCTG-AATCTGAATCTAGA
* *
67782032 TCTGAATCTGAATTTGGA
1 TCTGAATCTGAATCTAGA
*
67782050 TCTGTATCTG
1 TCTGAATCTG
67782060 CTTCTGACCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (18 bp):
TCTGAATCTGAATCTAGA
Found at i:67784043 original size:18 final size:18
Alignment explanation
Indices: 67784022--67784058 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
67784012 TGATTTGGAC
67784022 TAAGTCTTTGATACTTGA
1 TAAGTCTTTGATACTTGA
67784040 TAAGTCTTTGATACTTGA
1 TAAGTCTTTGATACTTGA
67784058 T
1 T
67784059 GACATTGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (18 bp):
TAAGTCTTTGATACTTGA
Found at i:67787941 original size:30 final size:29
Alignment explanation
Indices: 67787892--67787952 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
67787882 CAAGTAGCCG
*
67787892 AAGCTAGTTAAACCGCACACTTAGTGCCA
1 AAGCTAGTTAAACCACACACTTAGTGCCA
*
67787921 AAGCTAGTTTAAATCACACACTTAGTGCCA
1 AAGCTAG-TTAAACCACACACTTAGTGCCA
67787951 AA
1 AA
67787953 ACTTCCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.23
Consensus pattern (29 bp):
AAGCTAGTTAAACCACACACTTAGTGCCA
Found at i:67795000 original size:40 final size:40
Alignment explanation
Indices: 67794809--67794993 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
67794799 TCGAATGATG
* * * *
67794809 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
67794849 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTCACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67794889 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67794928 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67794969 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67794994 AACGAGTAGT
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67801165 original size:24 final size:25
Alignment explanation
Indices: 67801115--67801166 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
67801105 CATGCATATA
* * *
67801115 CAATGCAATCATTCTTTAATTCATT
1 CAATGCAATCAATCATTAATACATT
*
67801140 CAAT-CAATCAATCATTAATACTTT
1 CAATGCAATCAATCATTAATACATT
67801164 CAA
1 CAA
67801167 CATTCTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (25 bp):
CAATGCAATCAATCATTAATACATT
Found at i:67807723 original size:13 final size:13
Alignment explanation
Indices: 67807693--67807717 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67807683 CTAAATCATA
67807693 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
67807706 ATTTTAGTAAAA
1 ATTTTAGTAAAA
67807718 CTTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:67808172 original size:21 final size:21
Alignment explanation
Indices: 67808148--67808189 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
67808138 GCATGAATTA
67808148 ATTATATGTATTTATTAAAAT
1 ATTATATGTATTTATTAAAAT
* *
67808169 ATTATATTTATTTATTTAAAT
1 ATTATATGTATTTATTAAAAT
67808190 TTTTTATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTATATGTATTTATTAAAAT
Found at i:67808292 original size:73 final size:75
Alignment explanation
Indices: 67808158--67808306 Score: 230
Period size: 73 Copynumber: 2.0 Consensus size: 75
67808148 ATTATATGTA
**
67808158 TTTATTAAAATATTATATTTATTTATTTAAATTTTTTATACAAAAACTTTTGGTATTTAATAATT
1 TTTATTAAAATATTATATTTATTTATTTAAATTTTTTATACAAAAACTTTCAGTATTTAATAATT
67808223 AGAATCACTT
66 AGAATCACTT
* * * *
67808233 TTTATTAGAATGTTATATTTA-TTATTTAAATTTTTTGTA-TAAAACTTTCAGTATTTAATAATT
1 TTTATTAAAATATTATATTTATTTATTTAAATTTTTTATACAAAAACTTTCAGTATTTAATAATT
67808296 AGAATCACTT
66 AGAATCACTT
67808306 T
1 T
67808307 AAGAAACCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 32 0.47
74 17 0.25
75 19 0.28
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.52
Consensus pattern (75 bp):
TTTATTAAAATATTATATTTATTTATTTAAATTTTTTATACAAAAACTTTCAGTATTTAATAATT
AGAATCACTT
Found at i:67808635 original size:6 final size:6
Alignment explanation
Indices: 67808624--67808655 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
67808614 TAAAGTATTG
67808624 TAATTA TAATTA TAATTA TAATTA TAA-TA TAA
1 TAATTA TAATTA TAATTA TAATTA TAATTA TAA
67808656 CTGTATGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
TAATTA
Found at i:67814752 original size:93 final size:93
Alignment explanation
Indices: 67814640--67814811 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
67814630 CGCCCATAAG
* *
67814640 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67814705 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
67814733 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67814798 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
67814812 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:67814808 original size:46 final size:46
Alignment explanation
Indices: 67814633--67814808 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
67814623 TGTAACCCGC
*
67814633 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
67814679 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
67814729 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
67814772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
67814809 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:67819013 original size:40 final size:40
Alignment explanation
Indices: 67818959--67819181 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
67818949 ATTATTCATG
67818959 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
67818998 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTAGTTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
67819040 ATACCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * * *
67819080 ATTTCCGGCCTAAGACCCGAAAGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
67819120 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
67819160 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
67819182 TACTGTAACG
Statistics
Matches: 154, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
39 36 0.23
40 83 0.54
42 20 0.13
43 15 0.10
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:67820609 original size:47 final size:49
Alignment explanation
Indices: 67820489--67820666 Score: 207
Period size: 45 Copynumber: 3.8 Consensus size: 49
67820479 TGTAACCCGC
* *
67820489 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
67820534 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
67820584 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
67820627 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
67820667 TCAACCATCC
Statistics
Matches: 112, Mismatches: 8, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 36 0.32
46 29 0.26
47 30 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:67820654 original size:93 final size:92
Alignment explanation
Indices: 67820496--67820666 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
67820486 CGCCCATAAG
*
67820496 CGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67820561 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
67820588 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCATCCATAAGTGAACTCGGACTCAACTCA
67820653 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
67820667 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 29 0.38
93 47 0.62
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67821116 original size:30 final size:30
Alignment explanation
Indices: 67821082--67821138 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
67821072 CTTAATCAAA
67821082 TTTTGACA-AATTACAATTTTT-CCCCTAAAC
1 TTTTG-CATAATTAC-ATTTTTGCCCCTAAAC
*
67821112 TTTTGCATATTTACATTTTTGCCCCTA
1 TTTTGCATAATTACATTTTTGCCCCTA
67821139 GGCTCGGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.26, C:0.23, G:0.05, T:0.46
Consensus pattern (30 bp):
TTTTGCATAATTACATTTTTGCCCCTAAAC
Found at i:67828095 original size:93 final size:93
Alignment explanation
Indices: 67827982--67828153 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67827972 CGCCCATAAG
* *
67827982 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67828047 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
67828075 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67828140 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67828154 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67828150 original size:46 final size:46
Alignment explanation
Indices: 67827975--67828150 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67827965 TGTAACCCGC
* * *
67827975 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67828021 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
67828071 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67828114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67828151 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67837677 original size:3 final size:3
Alignment explanation
Indices: 67837669--67837698 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
67837659 TTTTAAAACC
67837669 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
67837699 TAAAAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:67838187 original size:14 final size:15
Alignment explanation
Indices: 67838170--67838203 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
67838160 AAAAGACTAT
*
67838170 AAATAAAA-TTATAA
1 AAATAAAATTTACAA
67838184 AAATAAAATTTACAA
1 AAATAAAATTTACAA
67838199 AAATA
1 AAATA
67838204 TGATAATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAAAATTTACAA
Found at i:67838299 original size:14 final size:14
Alignment explanation
Indices: 67838267--67838300 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
67838257 AAAAAAATGG
67838267 TAAAAATTATTTTA
1 TAAAAATTATTTTA
* *
67838281 AAAAAATTATTTTT
1 TAAAAATTATTTTA
67838295 TAAAAA
1 TAAAAA
67838301 AAGTTTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAAAAATTATTTTA
Found at i:67838299 original size:27 final size:28
Alignment explanation
Indices: 67838269--67838331 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
67838259 AAAAATGGTA
67838269 AAAATTATTTTAAAA-AAATTATTTTT-T
1 AAAATTATTTTAAAATAAATT-TTTTTAT
** * *
67838296 AAAAAAAGTTTAAAATGAATTTTTTTAT
1 AAAATTATTTTAAAATAAATTTTTTTAT
67838324 AAAATTAT
1 AAAATTAT
67838332 AAAATATATA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
27 17 0.63
28 10 0.37
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (28 bp):
AAAATTATTTTAAAATAAATTTTTTTAT
Found at i:67838327 original size:25 final size:25
Alignment explanation
Indices: 67838289--67838336 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
67838279 TAAAAAAATT
67838289 ATTTTTTAAAAAAAGTT-TAAAATGA
1 ATTTTTTAAAAAAA-TTATAAAATGA
* *
67838314 ATTTTTTTATAAAATTATAAAAT
1 ATTTTTTAAAAAAATTATAAAAT
67838337 ATATAGGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (25 bp):
ATTTTTTAAAAAAATTATAAAATGA
Found at i:67839166 original size:18 final size:17
Alignment explanation
Indices: 67839139--67839172 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
67839129 ATTTTTCCAA
67839139 TTTCTTTATATATTTAT
1 TTTCTTTATATATTTAT
*
67839156 TTTCATTTATATTTTTA
1 TTTC-TTTATATATTTA
67839173 ATGTGTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTCTTTATATATTTAT
Found at i:67841909 original size:46 final size:45
Alignment explanation
Indices: 67841859--67842031 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
67841849 TTGGGCATCC
67841859 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCT
* *** * * *
67841905 GAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCT
*
67841952 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCT
* *
67841997 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67842032 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 62 0.60
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCT
Found at i:67841963 original size:93 final size:93
Alignment explanation
Indices: 67841852--67842024 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
67841842 TAGGATGTTG
*
67841852 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-TCTGAACTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTC-GAACTCGTTGA
*
67841916 GTTGAGTCTGAGTTCGAGAGATGTAACTA
65 GTTGAGTCCGAGTTCGAGAGATGTAACTA
* *
67841945 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
67842010 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
67842025 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67844991 original size:14 final size:15
Alignment explanation
Indices: 67844942--67844991 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
67844932 GTATCTTGGG
*
67844942 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
67844957 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
67844972 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
67844986 TTTCTT
1 TTTCTT
67844992 GTTATATTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:67846700 original size:46 final size:45
Alignment explanation
Indices: 67846641--67846816 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
67846631 TGTTTGGGCA
*
67846641 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
67846687 TCTGAGCTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
67846734 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
67846780 CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67846817 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67846796 original size:93 final size:93
Alignment explanation
Indices: 67846637--67846809 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
67846627 AGGATGTTTG
* * ** *
67846637 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAGCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
67846702 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
67846730 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
67846795 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
67846810 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67850041 original size:43 final size:42
Alignment explanation
Indices: 67849954--67850065 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 42
67849944 TGAGTTTACG
**
67849954 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
* * *
67849996 TGTAAGACCATAGCTGGGCTATTGGCATCGATCTGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCCA
67850039 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
67850066 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 25 0.40
43 37 0.60
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:67853299 original size:36 final size:36
Alignment explanation
Indices: 67853252--67853324 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
67853242 CAGGGCACTT
67853252 AATCAAGGAACACACTCTTGAGCCACATATCGTATA
1 AATCAAGGAACACACTCTTGAGCCACATATCGTATA
67853288 AATCAAGGAACACACTCTTGAGCCACATATCGTATA
1 AATCAAGGAACACACTCTTGAGCCACATATCGTATA
67853324 A
1 A
67853325 CAGGATTACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.25, G:0.14, T:0.22
Consensus pattern (36 bp):
AATCAAGGAACACACTCTTGAGCCACATATCGTATA
Found at i:67858518 original size:27 final size:26
Alignment explanation
Indices: 67858483--67858594 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
67858473 AGTATGGCTG
* *
67858483 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
67858509 CCAGATACAGATAATCGTGGTAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
67858537 CCAGAACAGAAATATATGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
67858564 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
67858591 CCAG
1 CCAG
67858595 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 6 0.09
27 49 0.70
28 15 0.21
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:67866376 original size:27 final size:27
Alignment explanation
Indices: 67866339--67866445 Score: 91
Period size: 27 Copynumber: 4.1 Consensus size: 27
67866329 AGCATGGCTT
*
67866339 CCAGAACAGATAAT-GTGACAGAGTCA
1 CCAGAACAGATAATCGTGACAGAGCCA
*
67866365 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGACAGAGCCA
*
67866393 CCAG-A-A-AT-AT-GTGGCAGAGCCA
1 CCAGAACAGATAATCGTGACAGAGCCA
* * * * *
67866415 CCAGATCAAATAATTGTGGCATAGCCA
1 CCAGAACAGATAATCGTGACAGAGCCA
67866442 CCAG
1 CCAG
67866446 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
22 16 0.23
23 2 0.03
24 3 0.04
25 3 0.04
26 8 0.11
27 24 0.34
28 14 0.20
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGACAGAGCCA
Found at i:67866397 original size:22 final size:23
Alignment explanation
Indices: 67866372--67866420 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
67866362 TCACCAGATA
67866372 CAGATAAT-CGTGGCAGAGCCAC
1 CAGATAATACGTGGCAGAGCCAC
*
67866394 CAGA-AATATGTGGCAGAGCCAC
1 CAGATAATACGTGGCAGAGCCAC
67866416 CAGAT
1 CAGAT
67866421 CAAATAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.35, C:0.24, G:0.27, T:0.14
Consensus pattern (23 bp):
CAGATAATACGTGGCAGAGCCAC
Found at i:67866443 original size:49 final size:50
Alignment explanation
Indices: 67866351--67866445 Score: 138
Period size: 49 Copynumber: 1.9 Consensus size: 50
67866341 AGAACAGATA
* *
67866351 ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCAGAAAT
1 ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCAGAAAT
* * *
67866401 ATGTGGCAGAGCCACCAGAT-CAAATAATTGTGGCATAGCCACCAG
1 ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCAG
67866446 GACGCTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
49 22 0.55
50 18 0.45
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (50 bp):
ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCACCAGAAAT
Found at i:67869503 original size:39 final size:39
Alignment explanation
Indices: 67869419--67869529 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 39
67869409 AGATACTAAT
** *
67869419 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* *
67869459 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
67869499 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
67869530 GAGCTAAATC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 25 0.41
40 36 0.59
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:67880160 original size:37 final size:38
Alignment explanation
Indices: 67880059--67880161 Score: 133
Period size: 37 Copynumber: 2.8 Consensus size: 38
67880049 TTTGAGTACG
*
67880059 TGTAAGACCATAG-CTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGTCTGGGCTATGGCATTGTAATGACA
* *
67880096 TGTAAGACCATAGT-TGGGCTATGGCATTGTGAT-CCTA
1 TGTAAGACCATAGTCTGGGCTATGGCATTGTAATGAC-A
*
67880133 TGTAAGACCAT-GTCTGGGATATGGCATTG
1 TGTAAGACCATAGTCTGGGCTATGGCATTG
67880162 GCATCAATAT
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
36 3 0.05
37 56 0.95
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (38 bp):
TGTAAGACCATAGTCTGGGCTATGGCATTGTAATGACA
Found at i:67880176 original size:48 final size:48
Alignment explanation
Indices: 67880123--67880368 Score: 307
Period size: 48 Copynumber: 5.1 Consensus size: 48
67880113 GCTATGGCAT
*
67880123 TGTGATCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCAATA
1 TGTGATCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATA
* *
67880171 TGTGATCCCATGTAAGACCATGTCTGGGAGATGGCATTGGCATCGATA
1 TGTGATCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATA
* * * * *
67880219 TGTGATCCTATGTAAGACCATATTTGGGATATGACGTTGGCATCAATA
1 TGTGATCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATA
* * * *
67880267 TGTGATTTCGTA--TAAAACCATGTCTAGGAGATGGCATTGGCATCGATA
1 TGTGA--TCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATA
** * * *
67880315 TGCAATCCTATGTAAGACCATATCTGGGATATGACGTTGGCATCGATA
1 TGTGATCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATA
67880363 TGTGAT
1 TGTGAT
67880369 TTCGTATAAA
Statistics
Matches: 164, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
46 4 0.02
48 156 0.95
50 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (48 bp):
TGTGATCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCGATA
Found at i:67880287 original size:96 final size:96
Alignment explanation
Indices: 67880123--67880399 Score: 421
Period size: 96 Copynumber: 2.9 Consensus size: 96
67880113 GCTATGGCAT
* * * ** * * *
67880123 TGTGATCCTATGTAAGACCATGTCTGGGATATGGCATTGGCATCAATATGTGATCCCATGTAAGA
1 TGTGATCCTATGTAAGACCATATCTGGGATATGACGTTGGCATCAATATGTGATTTCGTATAAAA
67880188 CCATGTCTGGGAGATGGCATTGGCATCGATA
66 CCATGTCTGGGAGATGGCATTGGCATCGATA
*
67880219 TGTGATCCTATGTAAGACCATATTTGGGATATGACGTTGGCATCAATATGTGATTTCGTATAAAA
1 TGTGATCCTATGTAAGACCATATCTGGGATATGACGTTGGCATCAATATGTGATTTCGTATAAAA
*
67880284 CCATGTCTAGGAGATGGCATTGGCATCGATA
66 CCATGTCTGGGAGATGGCATTGGCATCGATA
** *
67880315 TGCAATCCTATGTAAGACCATATCTGGGATATGACGTTGGCATCGATATGTGATTTCGTATAAAA
1 TGTGATCCTATGTAAGACCATATCTGGGATATGACGTTGGCATCAATATGTGATTTCGTATAAAA
67880380 CCATGTCTGGG-GCATGGCAT
66 CCATGTCTGGGAG-ATGGCAT
67880400 CGATATGAGA
Statistics
Matches: 165, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
95 1 0.01
96 164 0.99
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (96 bp):
TGTGATCCTATGTAAGACCATATCTGGGATATGACGTTGGCATCAATATGTGATTTCGTATAAAA
CCATGTCTGGGAGATGGCATTGGCATCGATA
Found at i:67880383 original size:48 final size:48
Alignment explanation
Indices: 67880135--67880399 Score: 252
Period size: 48 Copynumber: 5.5 Consensus size: 48
67880125 TGATCCTATG
* * *
67880135 TAAGACCATGTCTGGGATATGGCATTGGCATCAATATGTGA-TCCCATG
1 TAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGATTTCC-TA
*
67880183 TAAGACCATGTCTGGGAGATGGCATTGGCATCGATATGTGA--TCCTA
1 TAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGATTTCCTA
* * * * * *
67880229 TGTAAGACCATATTTGGGATATGACGTTGGCATCAATATGTGATTTCGTA
1 --TAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGATTTCCTA
* * * * *
67880279 TAAAACCATGTCTAGGAGATGGCATTGGCATCGATATG-CA-ATCCTA
1 TAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGATTTCCTA
* * * *
67880325 TGTAAGACCATATCTGGGATATGACGTTGGCATCGATATGTGATTTCGTA
1 --TAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGATTTCCTA
* **
67880375 TAAAACCATGTCTGGGGCATGGCAT
1 TAAGACCATGTCTGGGATATGGCAT
67880400 CGATATGAGA
Statistics
Matches: 172, Mismatches: 37, Indels: 16
0.76 0.16 0.07
Matches are distributed among these distances:
46 5 0.03
47 3 0.02
48 155 0.90
49 1 0.01
50 8 0.05
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (48 bp):
TAAGACCATGTCTGGGATATGGCATTGGCATCGATATGTGATTTCCTA
Found at i:67887852 original size:27 final size:28
Alignment explanation
Indices: 67887768--67887865 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
67887758 CATGAGATTG
* * * *
67887768 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
67887797 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67887825 GCACAAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67887852 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67887866 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.37
28 21 0.34
29 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67887876 original size:27 final size:27
Alignment explanation
Indices: 67887796--67887878 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
67887786 TAAATTGTAC
* * *
67887796 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACAAAGTGTGCGA-CTTGAATATAT
* *
67887824 AGCACAAAGTGTGCGAGTTGATTATAT
1 AGCACAAAGTGTGCGACTTGAATATAT
**
67887851 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACAAAGTGTGC-GACTTGAATATAT
67887878 A
1 A
67887879 TTTTTGAATC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 29 0.60
28 19 0.40
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (27 bp):
AGCACAAAGTGTGCGACTTGAATATAT
Found at i:67891323 original size:28 final size:28
Alignment explanation
Indices: 67891291--67891361 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
67891281 AGTAAGTCCG
*
67891291 CACACTTAGTGTTATATAATCAAACTCA
1 CACACTTAGTGCTATATAATCAAACTCA
**
67891319 CACACTTAGTGCTATATAATCAAACTTG
1 CACACTTAGTGCTATATAATCAAACTCA
67891347 CACACTTAGTGCTAT
1 CACACTTAGTGCTAT
67891362 GCAATTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.32
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCA
Found at i:67896594 original size:25 final size:27
Alignment explanation
Indices: 67896552--67896603 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
67896542 AATATAATAT
*
67896552 AATATAATAAACATAAAGTAAATAAAAG
1 AATATAATAAACA-AAAGAAAATAAAAG
67896580 AATA-AATAAAC-AAAGAAAATAAAA
1 AATATAATAAACAAAAGAAAATAAAA
67896604 TAAAAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 12 0.52
27 7 0.30
28 4 0.17
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (27 bp):
AATATAATAAACAAAAGAAAATAAAAG
Found at i:67908210 original size:67 final size:67
Alignment explanation
Indices: 67908097--67908224 Score: 229
Period size: 67 Copynumber: 1.9 Consensus size: 67
67908087 ATTCAGACCG
**
67908097 TATTTAGATAAATTTGTTGTAGTATTCCTTGATGATATTTTAATTTATTCACGTGATTAATCTAC
1 TATTTAGATAAATTTACTGTAGTATTCCTTGATGATATTTTAATTTATTCACGTGATTAATCTAC
67908162 CT
66 CT
*
67908164 TATTTAGATAAATTTACTGTAGTATTCCTTGATGATATTTTGATTTATTCACGTGATTAAT
1 TATTTAGATAAATTTACTGTAGTATTCCTTGATGATATTTTAATTTATTCACGTGATTAAT
67908225 TTGAGCATGC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.49
Consensus pattern (67 bp):
TATTTAGATAAATTTACTGTAGTATTCCTTGATGATATTTTAATTTATTCACGTGATTAATCTAC
CT
Found at i:67912222 original size:55 final size:55
Alignment explanation
Indices: 67912130--67912241 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
67912120 AGTAGATAGA
* *
67912130 GAGCTGGCTTTAAATAGAGCAAACCATGAGGAAAGTAGGCATGCCCTTCTTGGCT
1 GAGCAGGCTTTAAATAGAGCAAACCATGAGGAAAGTAGGCATACCCTTCTTGGCT
*
67912185 GAGCAGGCTTTAAATAGAGCAAACCATGAGGAGAGTAGGCATACCCTTCTTGGCT
1 GAGCAGGCTTTAAATAGAGCAAACCATGAGGAAAGTAGGCATACCCTTCTTGGCT
67912240 GA
1 GA
67912242 TCGGTTTCGC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (55 bp):
GAGCAGGCTTTAAATAGAGCAAACCATGAGGAAAGTAGGCATACCCTTCTTGGCT
Found at i:67916732 original size:3 final size:3
Alignment explanation
Indices: 67916724--67916765 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
67916714 TTTTCCCAAA
*
67916724 AAT AAT AAT AAT AAT AAT AAT AACC AAT CAA- AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT -AAT AAT AAT AAT AA
67916766 AAAAGTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 28 0.82
4 4 0.12
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:67924936 original size:20 final size:21
Alignment explanation
Indices: 67924911--67924955 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
67924901 GAGGCAAAGC
67924911 ACACGCC-TGTGTGCTTAGGG
1 ACACGCCTTGTGTGCTTAGGG
67924931 ACACGCCTTTGTGTGCTTAGGG
1 ACACGCC-TTGTGTGCTTAGGG
67924953 ACA
1 ACA
67924956 TGCCCATGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 7 0.30
22 16 0.70
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (21 bp):
ACACGCCTTGTGTGCTTAGGG
Done.