Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 205 of 332
Found at i:68208205 original size:14 final size:14
Alignment explanation
Indices: 68208186--68208219 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
68208176 AACTAATAAT
68208186 AATAATAAATGTAA
1 AATAATAAATGTAA
68208200 AATAATAAATGTAA
1 AATAATAAATGTAA
68208214 AATAAT
1 AATAAT
68208220 CTTTCTAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (14 bp):
AATAATAAATGTAA
Found at i:68208205 original size:17 final size:15
Alignment explanation
Indices: 68208182--68208219 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
68208172 CTTTAACTAA
68208182 TAATAATAATAAATG
1 TAATAATAATAAATG
68208197 TAA-AATAATAAATG
1 TAATAATAATAAATG
68208211 TAA-AATAAT
1 TAATAATAAT
68208220 CTTTCTAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 20 0.87
15 3 0.13
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (15 bp):
TAATAATAATAAATG
Found at i:68215502 original size:96 final size:95
Alignment explanation
Indices: 68215338--68215805 Score: 356
Period size: 96 Copynumber: 4.9 Consensus size: 95
68215328 TGTATGTGTG
* * * * * * *
68215338 CTAGTGTAAAACCATGTTTGGAACATGGTATTGGCAAT-GTTATGAGAGCCAGTGTAAGACCATG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-GTCGATATGAGAGCCAGTGTAAGACCATG
*
68215402 TCTGGGACATGGCATCGACGTTGATAGGTGCA
65 TCTGGGACATGGCATCGACATTGATAGGTG-A
* * * *
68215434 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTCGATATGTGCGCTAGTGTAAGACCATGT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGATATGAGAGCCAGTGTAAGACCATGT
* * *
68215499 CTGGGACACGGGAACAGCCACATT-ATGAGG-G-
66 CTGGGACA-TGG--CATCGACATTGAT-AGGTGA
* * ** ** * * *
68215530 CTAGTGTAAAACCATGTCTAGGACATGGCATCGGTATTAAGACGAGAGCTAGTGTAAGACCATGT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGATATGAGAGCCAGTGTAAGACCATGT
* * * * *
68215595 TTGGGACATGGCATC-AGCGTCGATATGTGCG
66 CTGGGACATGGCATCGA-CATTGATAGGTG-A
* * ** *
68215626 CTAGTGTAAGACCATGTCTGGGACACGGCAACGGCCAC-ATTATGAGAGCCAGTGTAAAACCATG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGA-TATGAGAGCCAGTGTAAGACCATG
* * * * * *
68215690 TTTGAGACATGGCATCGACATTAAGACGAGA
65 TCTGGGACATGGCATCGACATTGATAGGTGA
* * * * * *
68215721 GCTAGAGTAAGACCATATATGGGGCATGGCATCGG-GCTCGACATGTGAGCCAGTGTAAGACCAT
1 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCG-TCGATATGAGAGCCAGTGTAAGACCAT
* *
68215785 GTCTAGGACATGGAATCGACA
64 GTCTGGGACATGGCATCGACA
68215806 ATCTACCCTT
Statistics
Matches: 290, Mismatches: 67, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
92 1 0.00
93 7 0.02
94 3 0.01
95 4 0.01
96 258 0.89
97 4 0.01
98 3 0.01
99 10 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (95 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGATATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATTGATAGGTGA
Found at i:68215590 original size:144 final size:144
Alignment explanation
Indices: 68215377--68215794 Score: 556
Period size: 144 Copynumber: 2.9 Consensus size: 144
68215367 ATTGGCAATG
* * * * * * *
68215377 TTATGAGAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGACGTTGATAGGTGCA-CTAGTG
1 TTATGAGAGCCAGTGTAAAACCATGT-TAGAGACATGGCATCGACATTAAGACGAG-AGCTAGTG
*
68215440 TAAGACCATGTCTGGGACATGGCATCAGCGTCGATATGTGCGCTAGTGTAAGACCATGTCTGGGA
64 TAAGACCATGTATGGGACATGGCATCAGCGTCGATATGTGCGCTAGTGTAAGACCATGTCTGGGA
*
68215505 CACGGGAACAGCCACA
129 CACGGCAACAGCCACA
* * **
68215521 TTATGAGGGCTAGTGTAAAACCATGTCTAG-GACATGGCATCGGTATTAAGACGAGAGCTAGTGT
1 TTATGAGAGCCAGTGTAAAACCATGT-TAGAGACATGGCATCGACATTAAGACGAGAGCTAGTGT
*
68215585 AAGACCATGTTTGGGACATGGCATCAGCGTCGATATGTGCGCTAGTGTAAGACCATGTCTGGGAC
65 AAGACCATGTATGGGACATGGCATCAGCGTCGATATGTGCGCTAGTGTAAGACCATGTCTGGGAC
*
68215650 ACGGCAACGGCCACA
130 ACGGCAACAGCCACA
* *
68215665 TTATGAGAGCCAGTGTAAAACCATGTTTGAGACATGGCATCGACATTAAGACGAGAGCTAGAGTA
1 TTATGAGAGCCAGTGTAAAACCATGTTAGAGACATGGCATCGACATTAAGACGAGAGCTAGTGTA
* * * * * * *
68215730 AGACCATATATGGGGCATGGCATC-GGGCTCGACATGTGAGCCAGTGTAAGACCATGTCTAGGAC
66 AGACCATGTATGGGACATGGCATCAGCG-TCGATATGTGCGCTAGTGTAAGACCATGTCTGGGAC
68215794 A
130 A
68215795 TGGAATCGAC
Statistics
Matches: 243, Mismatches: 27, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
143 5 0.02
144 237 0.98
145 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (144 bp):
TTATGAGAGCCAGTGTAAAACCATGTTAGAGACATGGCATCGACATTAAGACGAGAGCTAGTGTA
AGACCATGTATGGGACATGGCATCAGCGTCGATATGTGCGCTAGTGTAAGACCATGTCTGGGACA
CGGCAACAGCCACA
Found at i:68215680 original size:48 final size:48
Alignment explanation
Indices: 68215377--68215797 Score: 279
Period size: 48 Copynumber: 8.8 Consensus size: 48
68215367 ATTGGCAATG
* *
68215377 TTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACG
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA
* **
68215422 TTGAT-AGGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTCGA
1 TT-ATGA-GAG--CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-A
* * * * *
68215474 -TATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGGAACAGCCACA
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA
* * * ** *
68215521 TTATGAGGGCTAGTGTAAAACCATGTCTAGGACATGGCATC-GGTATTA
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CA
** * * **
68215569 AGACGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCGTCGA
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-A
* * * * *
68215618 -TATGTGCGCTAGTGTAAGACCATGTCTGGGACACGGCAACGGCCACA
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA
* * * *
68215665 TTATGAGAGCCAGTGTAAAACCATGTTTGAGACATGGCATC-G--ACA
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA
* * * * * * * *
68215710 TTAAGACGAGAGCTAGAGTAAGACCATATATGGGGCATGGCATCGGGCTCGA
1 TT---ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-A
* * * *
68215762 -CATGTGAGCCAGTGTAAGACCATGTCTAGGACATGG
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
68215798 AATCGACAAT
Statistics
Matches: 287, Mismatches: 68, Indels: 39
0.73 0.17 0.10
Matches are distributed among these distances:
45 8 0.03
46 4 0.01
47 5 0.02
48 258 0.90
49 4 0.01
50 4 0.01
51 3 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (48 bp):
TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACA
Found at i:68217822 original size:32 final size:32
Alignment explanation
Indices: 68217786--68217849 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
68217776 TGAGCCTATA
68217786 TTCATTTCAACAATTAAATCTTAAGTTTAGCT
1 TTCATTTCAACAATTAAATCTTAAGTTTAGCT
* *
68217818 TTCATTTCAGCAATTATATCTTAAGTTTAGCT
1 TTCATTTCAACAATTAAATCTTAAGTTTAGCT
68217850 AGTGAGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (32 bp):
TTCATTTCAACAATTAAATCTTAAGTTTAGCT
Found at i:68221736 original size:31 final size:31
Alignment explanation
Indices: 68221701--68221789 Score: 117
Period size: 31 Copynumber: 2.8 Consensus size: 31
68221691 AGACCCCCAA
* * *
68221701 AAGTTTAAGTACCAACTTAAGAAAAATTGTC
1 AAGTTTAAATACCAAATTAAGAAAAAGTGTC
*
68221732 AAGTTTAAATATCAAATT-AGAAAAAAGTGTC
1 AAGTTTAAATACCAAATTAAG-AAAAAGTGTC
68221763 AAGTTTAAATACCAAATTGAAGAAAAA
1 AAGTTTAAATACCAAATT-AAGAAAAA
68221790 AATAGATACC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
30 2 0.04
31 41 0.82
32 5 0.10
33 2 0.04
ACGTcount: A:0.52, C:0.09, G:0.12, T:0.27
Consensus pattern (31 bp):
AAGTTTAAATACCAAATTAAGAAAAAGTGTC
Found at i:68223539 original size:48 final size:46
Alignment explanation
Indices: 68223475--68223608 Score: 171
Period size: 48 Copynumber: 2.8 Consensus size: 46
68223465 AGTGATAATT
*
68223475 TTAAATTTTCAATACTATTTGATATTATTTTAATTTATGCAAATT-TAA
1 TTAAA-TTTCAATACTATTTGATATT-TTTTCATTTATGC-AATTATAA
68223523 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT-CAATACTATTTGATATTTT-TTCATTTATGCAATTATAA
** *
68223571 TTACAATTTCAATACTGCTTGATTTTTTTTCATTTATG
1 TTA-AATTTCAATACTATTTGATATTTTTTCATTTATG
68223609 ATGTTTGCAC
Statistics
Matches: 78, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
47 19 0.24
48 54 0.69
49 5 0.06
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (46 bp):
TTAAATTTCAATACTATTTGATATTTTTTCATTTATGCAATTATAA
Found at i:68225220 original size:18 final size:18
Alignment explanation
Indices: 68225197--68225239 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
68225187 TGCCAGGTGC
*
68225197 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
68225215 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
68225233 GTTTCCT
1 GTATCCT
68225240 TTTCCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:68229039 original size:126 final size:127
Alignment explanation
Indices: 68228814--68229101 Score: 490
Period size: 126 Copynumber: 2.3 Consensus size: 127
68228804 GAAACATCTG
*
68228814 CACTATTTGTTCAGAAACGTCTACTCAAAATTATTTTTCTATGAACTACTGTAGCAAAAGAGCGT
1 CACTATTTGTTCAGAAACGTCTACTCAAAATTATTTTTCTACGAACTACTGTAGCAAAAGAGCGT
68228879 CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCG-TTTTCAA
66 CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAA
* *
68228940 CACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTACGAACTACTGTAGCAAAAGAGTGT
1 CACTATTTGTTCAGAAACGTCTACTCAAAATTATTTTTCTACGAACTACTGTAGCAAAAGAGCGT
* * *
68229005 CCACGTGGGAGCTTTTTCCAGAAATTTTGCTGACAGTGTATCCTGCTTGAAGCGTTTTTCGA
66 CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAA
*
68229067 CACTATTT-TTCTAGAAACGTCTGCTCAAAATTATT
1 CACTATTTGTTC-AGAAACGTCTACTCAAAATTATT
68229102 CTTGCAGAAA
Statistics
Matches: 152, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
126 117 0.77
127 35 0.23
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (127 bp):
CACTATTTGTTCAGAAACGTCTACTCAAAATTATTTTTCTACGAACTACTGTAGCAAAAGAGCGT
CCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTCAA
Found at i:68229584 original size:15 final size:15
Alignment explanation
Indices: 68229564--68229593 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68229554 TTAAATTTTT
68229564 TCCTAAAACCCTAAA
1 TCCTAAAACCCTAAA
68229579 TCCTAAAACCCTAAA
1 TCCTAAAACCCTAAA
68229594 CCTTTACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (15 bp):
TCCTAAAACCCTAAA
Found at i:68236530 original size:51 final size:52
Alignment explanation
Indices: 68236454--68236553 Score: 193
Period size: 51 Copynumber: 1.9 Consensus size: 52
68236444 TGAGCCAAGA
68236454 AAATGAGCATGCATGTGCCTTAGATGCTAA-GGGGGGAAAATCAACTAAAGC
1 AAATGAGCATGCATGTGCCTTAGATGCTAAGGGGGGGAAAATCAACTAAAGC
68236505 AAATGAGCATGCATGTGCCTTAGATGCTAAGGGGGGGAAAATCAACTAA
1 AAATGAGCATGCATGTGCCTTAGATGCTAAGGGGGGGAAAATCAACTAA
68236554 CATGTTGTGT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 30 0.62
52 18 0.38
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (52 bp):
AAATGAGCATGCATGTGCCTTAGATGCTAAGGGGGGGAAAATCAACTAAAGC
Found at i:68238475 original size:38 final size:38
Alignment explanation
Indices: 68238378--68238480 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
68238368 GGCTTAATGA
** * *
68238378 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
68238416 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
* * *
68238454 CTCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
68238481 TCGGGCCTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAAT
Found at i:68238559 original size:43 final size:42
Alignment explanation
Indices: 68238457--68238559 Score: 136
Period size: 43 Copynumber: 2.5 Consensus size: 42
68238447 GATAAATCTC
68238457 GCAGGCCTAGTGCTGGT-ATTATATTCGGGCCTTCGTGCCTA
1 GCAGGCCTAGTGCTGGTGATTATATTCGGGCCTTCGTGCCTA
* * * *
68238498 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCCTAGTGCTGGTGAT-TATATTCGGGCCTTCGTGCCTA
* *
68238541 GCAGGCGTAATGCTGGTGA
1 GCAGGCCTAGTGCTGGTGA
68238560 AATGATATGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 14 0.27
42 2 0.04
43 36 0.69
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (42 bp):
GCAGGCCTAGTGCTGGTGATTATATTCGGGCCTTCGTGCCTA
Found at i:68240272 original size:48 final size:48
Alignment explanation
Indices: 68240179--68240281 Score: 122
Period size: 48 Copynumber: 2.1 Consensus size: 48
68240169 GTGCTAAGCT
* * *
68240179 TAAGACCTATCTGGGATAGGCATCGGCACAGCCCAATGAGTGCTAGTG
1 TAAGACCTATCTGGGATAGGCATCAGCACAGCCCAATGAGAGCTAGTA
*
68240227 TAAGACCTATC-GGGAATAGGCATCAGCACAG-GCAGA-GCAGAGCTAGTA
1 TAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCA-ATG-AGAGCTAGTA
68240275 TAAGACC
1 TAAGACC
68240282 ATAGTTGAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
47 6 0.12
48 42 0.88
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.17
Consensus pattern (48 bp):
TAAGACCTATCTGGGATAGGCATCAGCACAGCCCAATGAGAGCTAGTA
Found at i:68248120 original size:52 final size:52
Alignment explanation
Indices: 68248012--68248166 Score: 143
Period size: 52 Copynumber: 3.0 Consensus size: 52
68248002 GACGGAAAAG
* * * * * * *
68248012 ATGTGATATGTGTTTTCGTATAAGACCATAGCTAGGCTATGACATTGATACA
1 ATGTGATATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
***
68248064 ATGTGAT-TCGAG-TTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATAT-GAGATT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* ** *
68248116 ATGTGATAATGTGATTCCGTATAAGACCATATTTGGGATATGGCATCGGTA
1 ATGTGAT-ATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTA
68248167 TGTTATGTGA
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
51 3 0.04
52 45 0.54
53 33 0.39
54 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (52 bp):
ATGTGATATGAGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
Found at i:68248948 original size:20 final size:20
Alignment explanation
Indices: 68248923--68248969 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
68248913 CAGAATCGCC
68248923 CACGGGCATGTCCCAGACCA
1 CACGGGCATGTCCCAGACCA
*
68248943 CACGGGCATGTCCCAGGCCA
1 CACGGGCATGTCCCAGACCA
*
68248963 CAGGGGC
1 CACGGGC
68248970 GTGTGCCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.38, G:0.32, T:0.09
Consensus pattern (20 bp):
CACGGGCATGTCCCAGACCA
Found at i:68252799 original size:21 final size:22
Alignment explanation
Indices: 68252775--68252823 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
68252765 AATTTTTAAA
68252775 AATTTTTAAAATATTTAA-AAT
1 AATTTTTAAAATATTTAATAAT
* * *
68252796 AATTTTTTATATTTTTAATAAT
1 AATTTTTAAAATATTTAATAAT
68252818 AATTTT
1 AATTTT
68252824 AATGATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
AATTTTTAAAATATTTAATAAT
Found at i:68252818 original size:22 final size:22
Alignment explanation
Indices: 68252788--68252836 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
68252778 TTTTAAAATA
*
68252788 TTTAA-AATAATTTTTTAT-ATT
1 TTTAATAATAA-TTTTAATGATT
68252809 TTTAATAATAATTTTAATGATT
1 TTTAATAATAATTTTAATGATT
68252831 TTTAAT
1 TTTAAT
68252837 TTTTAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTAATAATAATTTTAATGATT
Found at i:68254634 original size:64 final size:64
Alignment explanation
Indices: 68254533--68254675 Score: 241
Period size: 64 Copynumber: 2.2 Consensus size: 64
68254523 TCATTCATAA
* * *
68254533 CACATCTAGTTAGGAGCTTTTGATTCATTTTAATCATAGCATCCTAATTATTTGACATAAGTAT
1 CACATCTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGTAT
* *
68254597 CACATCTAGTTAGGAACATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGTAT
1 CACATCTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGTAT
68254661 CACATCTAGTTAGGA
1 CACATCTAGTTAGGA
68254676 GTATTTTTAT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 74 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAACATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGTAT
Found at i:68255116 original size:89 final size:85
Alignment explanation
Indices: 68254969--68255265 Score: 233
Period size: 89 Copynumber: 3.4 Consensus size: 85
68254959 AATAAACAGA
* * *
68254969 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATAGCAGACCTTATCTCCCTAAAGTTGCAGTG
1 TCTTATCTCTCTGAAGTTGCAATAGAGCAGATAATAGCAGACCTTATCTCCCTAAAGTTGCAGTG
68255034 AAGCAGGTTGAAGTAGCAAG
66 AAGCAGGTTGAAGTAGCAAG
* *
68255054 TCTTATCTCTCTGAAGTTGCAATGGAGCAGACTGAATATGACAGACCTTATCTCCCTGAAGTTGC
1 TCTTATCTCTCTGAAGTTGCAATAGAGCAGA-T-AATA-G-CAGACCTTATCTCCCTAAAGTTGC
* * ** *
68255119 AGTGGAGCAGATCAAAGT--CATAA
62 AGTGAAGCAGGTTGAAGTAGCA-AG
* * * * * * * *
68255142 TCCTTATCTTTCTGAAGTTGTAGTAAAGTAGGATAAAAATACACAAACCTTATCTCCCTGAAGTT
1 T-CTTATCTCTCTGAAGTTGCAATAGAGCA-GAT---AATA-GCAGACCTTATCTCCCTAAAGTT
* *
68255207 GCAGTGGAGCCA-ATTGAAGATAGCGAA-
60 GCAGTGAAG-CAGGTTGAAG-TAGC-AAG
* * *
68255234 CCTTGTCTCTCTGAAGTTGCAGTAGAGCAGAT
1 TCTTATCTCTCTGAAGTTGCAATAGAGCAGAT
68255266 TAAAGCTATA
Statistics
Matches: 170, Mismatches: 28, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
85 28 0.16
86 1 0.01
87 5 0.03
88 3 0.02
89 60 0.35
90 40 0.24
91 30 0.18
93 2 0.01
94 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (85 bp):
TCTTATCTCTCTGAAGTTGCAATAGAGCAGATAATAGCAGACCTTATCTCCCTAAAGTTGCAGTG
AAGCAGGTTGAAGTAGCAAG
Found at i:68255125 original size:45 final size:42
Alignment explanation
Indices: 68254965--68255265 Score: 180
Period size: 44 Copynumber: 6.9 Consensus size: 42
68254955 TATAAATAAA
* * * * *
68254965 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT-CATAG
1 CAGACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAATAG
* * *
68255006 CAGACCTTATCTCCCTAAAGTTGCAGTGAAGCAGGTTGAAGTAG
1 CAGACCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATGAA-TAG
* * *
68255050 CA-AGTCTTATCTCTCTGAAGTTGCAATGGAGCAGACTGAATATG
1 CAGA-CCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAATA-G
*
68255094 ACAGACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAA-AG
1 -CAGACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAATAG
* ** * ** * * *
68255136 TCATAATCCTTATCTTTCTGAAGTTGTAGTAAAGTAGGATAAAAATACA
1 -CA-GA-CCTTATCTCCCTGAAGTTGCAGTGGAGCA-GAT--GAATA-G
*
68255185 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCCA-ATTGAAGATAG
1 CAGACCTTATCTCCCTGAAGTTGCAGTGGAG-CAGA-TG-A-ATAG
* * *
68255230 C-GAACCTTGTCTCTCTGAAGTTGCAGTAGAGCAGAT
1 CAG-ACCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
68255266 TAAAGCTATA
Statistics
Matches: 199, Mismatches: 40, Indels: 39
0.72 0.14 0.14
Matches are distributed among these distances:
41 27 0.14
42 5 0.03
43 7 0.04
44 63 0.32
45 62 0.31
46 27 0.14
47 5 0.03
48 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (42 bp):
CAGACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAATAG
Found at i:68255131 original size:130 final size:135
Alignment explanation
Indices: 68254873--68255132 Score: 316
Period size: 130 Copynumber: 1.9 Consensus size: 135
68254863 AGTGACAGGT
* *
68254873 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAATGTAGCGAATCTTATTTCCCTGAAGATGCA
1 CTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAATGTAGCGAATCTTATCTCCCTGAAGATGCA
* * * * *
68254938 GTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCA
66 ATGGAACAGACTGAA-C-AT-AATAAACAGACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCA
68255003 TAGCAGAC
128 TAGCAGAC
** * *
68255011 CTTATCTCCCTAAAGTTGCAGTGAAGCAGGTTGAA-GTAGC-AAGTCTTATCTCTCTGAAGTTGC
1 CTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAATGTAGCGAA-TCTTATCTCCCTGAAGATGC
* * *
68255074 AATGGAGCAGACTG-A-AT-AT-GACAGACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCA
65 AATGGAACAGACTGAACATAATAAACAGACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCA
68255133 AAGTCATAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
130 35 0.33
131 2 0.02
133 2 0.02
136 3 0.03
137 33 0.31
138 32 0.30
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (135 bp):
CTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAATGTAGCGAATCTTATCTCCCTGAAGATGCA
ATGGAACAGACTGAACATAATAAACAGACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATAG
CAGAC
Found at i:68255451 original size:44 final size:45
Alignment explanation
Indices: 68255374--68255479 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 45
68255364 GCCACAAACT
* * ** * ** *
68255374 TTATCCCCCTGAAGTTACAGTGGGGCAAGTTGAAGTTA-TGAGTC
1 TTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAATC
68255418 TTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAATC
1 TTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAATC
*
68255463 TTATCTCTCTGAAGTTG
1 TTATCTCCCTGAAGTTG
68255480 TAGTAGAGCA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
44 31 0.60
45 21 0.40
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (45 bp):
TTATCTCCCTGAAGTTGCAGTGAAGCAAATTGAAGAGAGTGAATC
Found at i:68255841 original size:18 final size:18
Alignment explanation
Indices: 68255815--68255849 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
68255805 CTGTATCGCT
*
68255815 GTATTATTTTGAAAACGA
1 GTATCATTTTGAAAACGA
68255833 GTATCATTTTGAAAACG
1 GTATCATTTTGAAAACG
68255850 CGCCCTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (18 bp):
GTATCATTTTGAAAACGA
Found at i:68256575 original size:10 final size:10
Alignment explanation
Indices: 68256551--68256590 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
68256541 CATCTCATAA
68256551 CATATCATGT
1 CATATCATGT
68256561 GCATATCATGT
1 -CATATCATGT
*
68256572 CATAACATGT
1 CATATCATGT
68256582 CATATCATG
1 CATATCATG
68256591 AATATCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (10 bp):
CATATCATGT
Found at i:68256575 original size:21 final size:21
Alignment explanation
Indices: 68256517--68256597 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
68256507 ACCCAACCCA
* * *
68256517 TGCATATAATGAATATATCTTG
1 TGCATATCATG-ACATATCATG
* *
68256539 TGCATCTCATAACATATCATG
1 TGCATATCATGACATATCATG
* *
68256560 TGCATATCATGTCATAACATG
1 TGCATATCATGACATATCATG
68256581 T-CATATCATGA-ATATCA
1 TGCATATCATGACATATCA
68256598 AAATCTCATG
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
19 5 0.10
20 9 0.19
21 26 0.54
22 8 0.17
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (21 bp):
TGCATATCATGACATATCATG
Found at i:68263449 original size:11 final size:10
Alignment explanation
Indices: 68263433--68263469 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
68263423 CATCTCATAA
68263433 CATATCATGT
1 CATATCATGT
68263443 GCATATCATGT
1 -CATATCATGT
68263454 CATATCATGT
1 CATATCATGT
68263464 -ATATCA
1 CATATCA
68263470 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:68263457 original size:21 final size:21
Alignment explanation
Indices: 68263399--68263463 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
68263389 ACCCAACCCA
* * *
68263399 TGCATATAATGAATATATCTTG
1 TGCATATCAT-AACATATCATG
*
68263421 TGCATCTCATAACATATCATG
1 TGCATATCATAACATATCATG
**
68263442 TGCATATCATGTCATATCATG
1 TGCATATCATAACATATCATG
68263463 T
1 T
68263464 ATATCAAAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
21 28 0.78
22 8 0.22
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (21 bp):
TGCATATCATAACATATCATG
Found at i:68265358 original size:18 final size:18
Alignment explanation
Indices: 68265335--68265369 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68265325 TTTAAAAAAA
*
68265335 AATTACCAAATTCTCGAT
1 AATTACCAAAATCTCGAT
*
68265353 AATTACGAAAATCTCGA
1 AATTACCAAAATCTCGA
68265370 AAATCAGGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.29
Consensus pattern (18 bp):
AATTACCAAAATCTCGAT
Found at i:68267218 original size:28 final size:29
Alignment explanation
Indices: 68267186--68267258 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
68267176 ATGTCACTTA
68267186 TTTTAAATAGTTTTATATACA-TTAT-TT
1 TTTTAAATAGTTTTATATACATTTATATT
* *
68267213 GTTTTAAATAATTTTTATATATATTTATATT
1 -TTTTAAAT-AGTTTTATATACATTTATATT
*
68267244 TTTT-AATTGTTTTAT
1 TTTTAAATAGTTTTAT
68267259 TAGTTGTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
28 14 0.37
29 14 0.37
30 8 0.21
31 2 0.05
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (29 bp):
TTTTAAATAGTTTTATATACATTTATATT
Found at i:68267246 original size:29 final size:28
Alignment explanation
Indices: 68267186--68267258 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 28
68267176 ATGTCACTTA
*
68267186 TTTTAAATAGTTTTATATACATTATTTG
1 TTTTAAATAGTTTTATATACATTATATG
* *
68267214 TTTTAAATAATTTTTATATATATTTATAT-
1 TTTTAAAT-AGTTTTATATACA-TTATATG
* *
68267243 TTTTTAATTGTTTTAT
1 TTTTAAATAGTTTTAT
68267259 TAGTTGTTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
28 14 0.38
29 18 0.49
30 5 0.14
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (28 bp):
TTTTAAATAGTTTTATATACATTATATG
Found at i:68267437 original size:19 final size:20
Alignment explanation
Indices: 68267415--68267486 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
68267405 ATATATTATA
68267415 TATTTTAAACTCTATAT-TT
1 TATTTTAAACTCTATATATT
* *
68267434 TATTTTAAATTGTTATATATAT
1 TATTTTAAACT-CTATATAT-T
*
68267456 ATATATTTAAACTCTATTTATT
1 -TAT-TTTAAACTCTATATATT
68267478 TATTTTAAA
1 TATTTTAAA
68267487 ATATTTTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 10 0.23
20 11 0.26
21 4 0.09
22 2 0.05
23 9 0.21
24 7 0.16
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (20 bp):
TATTTTAAACTCTATATATT
Found at i:68267465 original size:43 final size:44
Alignment explanation
Indices: 68267403--68267486 Score: 136
Period size: 43 Copynumber: 1.9 Consensus size: 44
68267393 TAGATTTTTT
68267403 TTATATATTATATATTTTAAACTCTATAT-TTTATTTTAAATTG
1 TTATATATTATATATTTTAAACTCTATATATTTATTTTAAATTG
*
68267446 TTATATA-TATATATATTTAAACTCTATTTATTTATTTTAAA
1 TTATATATTATATAT-TTTAAACTCTATATATTTATTTTAAA
68267487 ATATTTTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 7 0.18
43 20 0.53
44 11 0.29
ACGTcount: A:0.37, C:0.05, G:0.01, T:0.57
Consensus pattern (44 bp):
TTATATATTATATATTTTAAACTCTATATATTTATTTTAAATTG
Found at i:68267525 original size:24 final size:26
Alignment explanation
Indices: 68267479--68267526 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
68267469 CTATTTATTT
*
68267479 ATTTTAAAATATTTTATTTATTATCC
1 ATTTTAAAATATTTTATTCATTATCC
*
68267505 ATTTTAAGAT-TTTT-TTCATTAT
1 ATTTTAAAATATTTTATTCATTAT
68267527 ACTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 4 0.20
26 9 0.45
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (26 bp):
ATTTTAAAATATTTTATTCATTATCC
Found at i:68274616 original size:18 final size:18
Alignment explanation
Indices: 68274590--68274625 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
68274580 ATTCACTTCT
*
68274590 TGATTAATGATAGGTATG
1 TGATCAATGATAGGTATG
68274608 TGATCAATGATAGGTATG
1 TGATCAATGATAGGTATG
68274626 AGAACCTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.28, T:0.36
Consensus pattern (18 bp):
TGATCAATGATAGGTATG
Found at i:68281135 original size:25 final size:24
Alignment explanation
Indices: 68281098--68281151 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
68281088 TTAAAGTAGA
* *
68281098 AAAT-AAATCAATTTGATTAAAAT
1 AAATCAAATCAATTGGAATAAAAT
*
68281121 CAAATCAAATTAATTGGAATAAAAT
1 -AAATCAAATCAATTGGAATAAAAT
68281146 AAATCA
1 AAATCA
68281152 GGATATATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.57, C:0.07, G:0.06, T:0.30
Consensus pattern (24 bp):
AAATCAAATCAATTGGAATAAAAT
Found at i:68284670 original size:82 final size:82
Alignment explanation
Indices: 68284581--68284781 Score: 305
Period size: 82 Copynumber: 2.5 Consensus size: 82
68284571 AAATCTTCGC
* * * * *
68284581 TTGGAAACAAAATTAAGA-TCGAATAAAATCTGTTAAACAGTGGGAATAAATCCCAAAACAGATT
1 TTGGAAACAAAATCAAAACT-GAATAAAATCTATTAAACAGCGAGAATAAATCCCAAAACAGATT
*
68284645 ATTCAATTTAATTCTAAT
65 ATTCAATTCAATTCTAAT
*
68284663 TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAACAGCGAGAATAAATCCCGAAACAGATTA
1 TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAACAGCGAGAATAAATCCCAAAACAGATTA
68284728 TTCAATTCAATTCTAAT
66 TTCAATTCAATTCTAAT
* *
68284745 TTGGTAACAAAATCAAAACTAAATAAAATCTATTAAA
1 TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAA
68284782 AACAGATTTC
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
82 108 0.99
83 1 0.01
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.27
Consensus pattern (82 bp):
TTGGAAACAAAATCAAAACTGAATAAAATCTATTAAACAGCGAGAATAAATCCCAAAACAGATTA
TTCAATTCAATTCTAAT
Found at i:68284916 original size:87 final size:86
Alignment explanation
Indices: 68284820--68285211 Score: 404
Period size: 87 Copynumber: 4.5 Consensus size: 86
68284810 TTTGGCAACT
* *
68284820 AAATAAAAAAATGGAATAAAATCTGTTGAACAACGGGAATAAATCCCGAAACATATTTTAATTAA
1 AAAT-AAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACATATTTTAATTAA
*
68284885 TTTTAATACTTATTTTGGAAAAA
65 TTTTAACA-TTATTTTGGAAAAA
* *
68284908 AAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCTCGAAACATATTTTATTTAAT
1 AAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACATATTTTAATTAAT
* *
68284973 TTTAACATTCGTTTTGGAAATA
66 TTTAACATT-ATTTTGGAAAAA
* * *
68284995 AAATAAAAAATAGAATAAAATTTGTTGAACGACAGGAATAAATAATAAATCCCGAAATATATTTT
1 AAATAAAAAATAGAATAAAATCTGTTGAACGAC-GG------GAATAAATCCCGAAACATATTTT
* *
68285060 -ATTCACTTTT---A--A-TTTGGAAACA
59 AATT-AATTTTAACATTATTTTGGAAAAA
* * * * *
68285082 AAATAAAAAATAGAATAAATTCTGTAGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAAT
1 AAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACATATTTTAATTAAT
**
68285147 TTTAACACTCGTTTT-GAAAATA
66 TTTAACA-TTATTTTGGAAAA-A
* * * *
68285169 AAATCAAAATTTGAATAAAATATGTTGAACGACGGGAATAAAT
1 AAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAAT
68285212 AATAAATCCT
Statistics
Matches: 253, Mismatches: 33, Indels: 37
0.78 0.10 0.11
Matches are distributed among these distances:
80 25 0.10
81 2 0.01
83 1 0.00
86 8 0.03
87 183 0.72
88 6 0.02
91 1 0.00
93 2 0.01
94 25 0.10
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.31
Consensus pattern (86 bp):
AAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACATATTTTAATTAAT
TTTAACATTATTTTGGAAAAA
Found at i:68285087 original size:174 final size:174
Alignment explanation
Indices: 68284898--68285318 Score: 597
Period size: 174 Copynumber: 2.5 Consensus size: 174
68284888 TAATACTTAT
* *
68284898 TTTGGAAAAAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCTCGAAACATAT
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACATAT
* * *
68284963 TTTATTTAATTTTAACATTCGTTTTGGAAATAAAATAAAAAATAGAATAAAATTTGTTGAACGAC
66 TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATAAAAAATAGAATAAAATATGTTGAACGAC
*
68285028 AGGAATAAATAATAAATCCCGAAATATATTTTATTCACTTTTAA
131 AGGAATAAATAATAAATCCCGAAACATATTTTATTCACTTTTAA
* * * *
68285072 TTTGGAAACAAAATAAAAAATAGAATAAATTCTGTAGAACGGCGGGAATAAATCCCGAAACAGAT
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACATAT
* * *
68285137 TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATCAAAATTTGAATAAAATATGTTGAACGAC
66 TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATAAAAAATAGAATAAAATATGTTGAACGAC
* * *
68285202 GGGAATAAATAATAAATCCTGAAACATATTTTGTTCACTTTTAA
131 AGGAATAAATAATAAATCCCGAAACATATTTTATTCACTTTTAA
* * *
68285246 TTTGGAAACAAAAT------CA-AATAAAATCTGTTAAACGGA-GGGAATAAATCCCGAAATATA
1 TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAAC-GACGGGAATAAATCCCGAAACATA
*
68285303 TTTTATTTAACTTTAA
65 TTTTATTTAATTTTAA
68285319 TTTTTATTTT
Statistics
Matches: 222, Mismatches: 24, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
167 48 0.22
168 2 0.01
174 172 0.77
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (174 bp):
TTTGGAAACAAAATAAAAAATAGAATAAAATCTGTTGAACGACGGGAATAAATCCCGAAACATAT
TTTATTTAATTTTAACACTCGTTTTGAAAATAAAATAAAAAATAGAATAAAATATGTTGAACGAC
AGGAATAAATAATAAATCCCGAAACATATTTTATTCACTTTTAA
Found at i:68285263 original size:87 final size:87
Alignment explanation
Indices: 68284985--68285259 Score: 276
Period size: 87 Copynumber: 3.2 Consensus size: 87
68284975 TAACATTCGT
* * *
68284985 TTTGGAAATAAAATAAAAAATAGAATAAAATTTGTTGAACGACAGGAATAAATAATAAATCCCGA
1 TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAATCCCGA
*
68285050 AATATATTTTATTCACTTTTAA
66 AACATATTTTATTCACTTTTAA
* * * *
68285072 TTTGGAAACAAAATAAAAAATAGAATAAATTCTGTAGAACGGCGGG-------AATAAATCCCGA
1 TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAATCCCGA
* * *
68285130 AACAGATTTTATTTAATTTTAACA
66 AACATATTTTATTCACTTTT-A-A
* * * * *
68285154 CTCGTTTTGAAAATAAAATCAAAATTTGAATAAAATATGTTGAACGACGGGAATAAATAATAAAT
1 -----TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAAT
* *
68285219 CCTGAAACATATTTTGTTCACTTTTAA
61 CCCGAAACATATTTTATTCACTTTTAA
68285246 TTTGGAAACAAAAT
1 TTTGGAAACAAAAT
68285260 CAAATAAAAT
Statistics
Matches: 148, Mismatches: 26, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
80 28 0.19
81 1 0.01
82 1 0.01
87 89 0.60
92 1 0.01
93 1 0.01
94 27 0.18
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (87 bp):
TTTGGAAACAAAATAAAAAATAGAATAAAATATGTTGAACGACGGGAATAAATAATAAATCCCGA
AACATATTTTATTCACTTTTAA
Found at i:68285955 original size:20 final size:19
Alignment explanation
Indices: 68285926--68285976 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
68285916 TTAAAGTAGC
* *
68285926 AAATAAATCAATTTGATTA
1 AAATAAATCAAATTAATTA
68285945 AAATCAAATCAAATTAATTA
1 AAAT-AAATCAAATTAATTA
68285965 AAA-AAATCAAAT
1 AAATAAATCAAAT
68285977 AAATCAAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 9 0.31
19 4 0.14
20 16 0.55
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATAAATCAAATTAATTA
Found at i:68289332 original size:20 final size:22
Alignment explanation
Indices: 68289299--68289343 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
68289289 AAAGTAAATA
**
68289299 AAACAAAGGTTAAAA-AAA-AG
1 AAACAAAGCATAAAAGAAACAG
68289319 AAACAAAGCATAAAAGAAACAG
1 AAACAAAGCATAAAAGAAACAG
68289341 AAA
1 AAA
68289344 ACTCAAACGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 3 0.14
22 5 0.24
ACGTcount: A:0.71, C:0.09, G:0.13, T:0.07
Consensus pattern (22 bp):
AAACAAAGCATAAAAGAAACAG
Found at i:68289773 original size:17 final size:18
Alignment explanation
Indices: 68289751--68289786 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
68289741 TAAATGAGTT
68289751 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
68289768 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
68289786 A
1 A
68289787 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:68290604 original size:4 final size:4
Alignment explanation
Indices: 68290591--68290628 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
68290581 GAAGAATAGC
68290591 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
68290629 TTGTATTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 30 0.91
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:68297377 original size:17 final size:18
Alignment explanation
Indices: 68297355--68297390 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
68297345 TAAATGAGTT
68297355 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
68297372 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
68297390 A
1 A
68297391 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:68297906 original size:21 final size:21
Alignment explanation
Indices: 68297830--68297894 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
68297820 TTATCGACTT
*
68297830 TGTCG-ATCAGGCA-CTGTATG
1 TGTCGTATCAGGCACCT-CATG
*
68297850 TGTCGTATCAGGCACCTCGTG
1 TGTCGTATCAGGCACCTCATG
68297871 TGTCGTATCAGGCACCTCATG
1 TGTCGTATCAGGCACCTCATG
68297892 TGT
1 TGT
68297895 TGTTTTAGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
20 5 0.12
21 33 0.82
22 2 0.05
ACGTcount: A:0.17, C:0.25, G:0.28, T:0.31
Consensus pattern (21 bp):
TGTCGTATCAGGCACCTCATG
Found at i:68303842 original size:2 final size:2
Alignment explanation
Indices: 68303835--68303859 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68303825 CTTTTAAAAT
68303835 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
68303860 GTTTATGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68304822 original size:132 final size:132
Alignment explanation
Indices: 68304553--68304951 Score: 502
Period size: 132 Copynumber: 3.0 Consensus size: 132
68304543 TAATCATTTA
* * ** * * *
68304553 AAAAACTTTTTAAAACGAAGGCGATGTTCGATATTTGGCAATTCGAAGAATCGTGCCCTATCGTG
1 AAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGCAATTTGAGGAATCGTGCCCTATCGTG
* *
68304618 CTGGGTTGC-AATTTCTTGTTTGCTCAAAATAATCGAATG-TCCCTTTAGAATTTCACTCATGT-
66 CTGGGTTGCGAATTTCTTGTTTGTTCAAAATAATCGAA-GATTCCTTTAGAATTTCACTCATGTC
68304680 TTT
130 TTT
*
68304683 CCAAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGTAATTTG-GGAATCGTGCCCTATCG
1 --AAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGCAATTTGAGGAATCGTGCCCTATCG
* * * *
68304747 TGCTGGGTTGCGATTTTTTTCATTTGTTCAAAATAATCGAAGATTCCTTTGGAATTTCACTCATG
64 TGCTGGGTTGCGAATTTCTT-GTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATG
68304812 TCTTT
128 TCTTT
* * **
68304817 AAAAACTCTTCGAAACGAAGGTAATACTCGATGTTTGGCAATTTGAGGAATCGTGCCCTATCGTG
1 AAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGCAATTTGAGGAATCGTGCCCTATCGTG
* * * * *
68304882 CTGGGTTGCG-GTTTCCTGTTTGTTCAAAATAATCAAATATTCCTTTAGAATTTCATTCATGCTC
66 CTGGGTTGCGAATTTCTTGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATG-TC
*
68304946 TCT
130 TTT
68304949 AAA
1 AAA
68304952 TTCTAAAATA
Statistics
Matches: 233, Mismatches: 28, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
131 66 0.28
132 96 0.41
133 68 0.29
134 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (132 bp):
AAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGCAATTTGAGGAATCGTGCCCTATCGTG
CTGGGTTGCGAATTTCTTGTTTGTTCAAAATAATCGAAGATTCCTTTAGAATTTCACTCATGTCT
TT
Found at i:68307924 original size:21 final size:21
Alignment explanation
Indices: 68307885--68307924 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
68307875 AAGTTTAAGC
*
68307885 AAAATAGAAGAAATGAAAGGA
1 AAAATAGAAGAAATAAAAGGA
*
68307906 AAAATAGAAGAATTAAAAG
1 AAAATAGAAGAAATAAAAG
68307925 CGTCACTGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (21 bp):
AAAATAGAAGAAATAAAAGGA
Found at i:68316746 original size:133 final size:133
Alignment explanation
Indices: 68316508--68316883 Score: 520
Period size: 133 Copynumber: 2.8 Consensus size: 133
68316498 CTAATTCTAC
* * * * * * *
68316508 AGATCTTGTCTCCCTGAAGTTGCAGCGGAACAGATCA-AAAATGGCGAATCTAGTCATCCTAAAG
1 AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGAT-AGAAGATGGTGAATCTTGTCTTCCTGAAG
** *
68316572 TTGCAGTGAAACAGATTTAAGCTGCCATCCTATCTCCCTAAAGTTGTAGTTGGGTAGGTTGAAGA
65 TTGCAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGA
68316637 TTGT
130 TTGT
* * *
68316641 AGATCTTGTTTCCCTAAAGTTGCAGCAGAGGAGATAGAAGATGGTGAATCTTGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATAGAAGATGGTGAATCTTGTCTTCCTGAAGT
68316706 TGCAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
66 TGCAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
68316771 TGT
131 TGT
* * * * *
68316774 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAGTCTTGTCTTCCTGAAGA
1 AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATAGAAGATGGTGAATCTTGTCTTCCTGAAGT
* * * * *
68316839 TGCAGTGAAGCAGATTGAAGTCACTATCCTTATCTCTCTAAAGTT
66 TGCAGTGAAACAGATTTAAGCCACCATCC-TATCTCCCTAAAGTT
68316884 CCAGTAGAGC
Statistics
Matches: 215, Mismatches: 26, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
132 1 0.00
133 200 0.93
134 14 0.07
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (133 bp):
AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATAGAAGATGGTGAATCTTGTCTTCCTGAAGT
TGCAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
TGT
Found at i:68319706 original size:132 final size:131
Alignment explanation
Indices: 68319437--68319835 Score: 489
Period size: 132 Copynumber: 3.0 Consensus size: 131
68319427 TATTCATTTA
* * ** * * *
68319437 AAAAACTTTTTAAAATGAAGGCGATGTTCGATATTTGGCAATTCGCGGAATCATGCCCCATCGTG
1 AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATCGTG
* * * * *
68319502 CTGGGTTGC-AATTTCTCGTTTGCTCAAAATAATCGAATGTACCTTTAGAATTTCACCCATGT-T
65 CTGGGTTGCGATTTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCT
68319565 TT
130 TT
* * *
68319567 CCAAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGTAATTCGGGAATCGTTCCCTATCGT
1 --AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGT
* * *
68319632 GCTGGGTTGCGATTTTTTTCATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
64 GCTGGGTTGCGA-TTTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
68319697 CTTT
128 CTTT
* * **
68319701 AAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
1 AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATCGTG
* * *
68319766 CTGGGTTGCGGTTTCCT-GTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCATTCATGCTC
65 CTGGGTTGCGATTTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG-TC
*
68319830 TCT
129 TTT
68319833 AAA
1 AAA
68319836 TTCTAAAATA
Statistics
Matches: 230, Mismatches: 32, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
131 66 0.29
132 88 0.38
133 73 0.32
134 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (131 bp):
AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGC
TGGGTTGCGATTTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTT
T
Found at i:68319826 original size:131 final size:131
Alignment explanation
Indices: 68319464--68319835 Score: 471
Period size: 133 Copynumber: 2.8 Consensus size: 131
68319454 AAGGCGATGT
* * * * * *
68319464 TCGATATTTGGCAATTCGCGGAATCATGCCCCATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAA
1 TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAA
* * * **
68319529 AATAATCGAATGTACCTTTAGAATTTCACCCATGT-TTTCCAAAAACTCTTTGAAACGAAGGAAA
66 AATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTT--AAAAACTCTTCAAAACGAAGGAAA
**
68319593 TGT
129 TAC
* * * *
68319596 TCGATGTTTGGTAATTC-GGGAATCGTTCCCTATCGTGCTGGGTTGCGATTTTTTTCATTTGTTC
1 TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGA--TTTCTCGTTTGTTC
* *
68319660 AAAATAATCGAATATTCCTTTGGAATTTCACTCATGTCTTTAAAAACTCTTCAAAACGAAGGTAA
64 AAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCAAAACGAAGGAAA
68319725 TAC
129 TAC
*
68319728 TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGGTTTC-CTGTTTGTTCA
1 TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTC-GTTTGTTCA
* *
68319792 AAATAATCGAATATTCCTTTAGAATTTCATTCATGCTCTCTAAA
65 AAATAATCGAATATTCCTTTAGAATTTCACTCATG-TCTTTAAA
68319836 TTCTAAAATA
Statistics
Matches: 207, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
130 1 0.00
131 70 0.34
132 60 0.29
133 73 0.35
134 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (131 bp):
TCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAA
AATAATCGAATATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCAAAACGAAGGAAATA
C
Found at i:68319925 original size:127 final size:129
Alignment explanation
Indices: 68319476--68319914 Score: 390
Period size: 133 Copynumber: 3.4 Consensus size: 129
68319466 GATATTTGGC
* * * * *
68319476 AATTCGCGGAATCATGCCCCATCGTGCTGGGTTGC-AATTTCTCGTTTGCTCAAAATAATCGAAT
1 AATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCGATTTTTTCG-TTGTTCAAAATAATCGAAT
* * * * * ** * ** * *
68319540 GTACCTTTAGAATTTCACCCATGTTTTCCAAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTT
64 ATTCCTTTAGAATTTCACTCATG-TCT-CTAAAACTCTTCAAAACGAAGGTAATACTCGATATCT
* *
68319605 GGT
127 AGA
* *
68319608 AATTCGGGAATCGTTCCCTATCGTGCTGGGTTGCGATTTTTTTCATTTGTTCAAAATAATCGAAT
1 AATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGA-TTTTTTC-GTTGTTCAAAATAATCGAAT
* * * * *
68319673 ATTCCTTTGGAATTTCACTCATGTCTTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTG
64 ATTCCTTTAGAATTTCACTCATGTCTCT-AAAACTCTTCAAAACGAAGGTAATACTCGATATCTA
*
68319738 GC
128 GA
* **
68319740 AATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGGTTTCCT-GTTTGTTCAAAATAATCGAAT
1 AATTC-GGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTTTTCG-TTGTTCAAAATAATCGAAT
* * * *
68319804 ATTCCTTTAGAATTTCATTCATGCTCTCT-AAATTC-T-AAAA-TAAGGTAAT-GTCTGATATCT
64 ATTCCTTTAGAATTTCACTCATG-TCTCTAAAACTCTTCAAAACGAAGGTAATACTC-GATATCT
68319864 AGA
127 AGA
*
68319867 AATTCGAGGAATCGTGCCCTA-CTGTGCTGGGTTTCGATTTTTTCGTTG
1 AATTCG-GGAATCGTGCCCTATC-GTGCTGGGTTGCGATTTTTTCGTTG
68319915 GACTAAATAA
Statistics
Matches: 257, Mismatches: 39, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
126 4 0.02
127 52 0.20
128 5 0.02
129 1 0.00
130 5 0.02
131 65 0.25
132 54 0.21
133 71 0.28
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (129 bp):
AATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTTTTCGTTGTTCAAAATAATCGAATAT
TCCTTTAGAATTTCACTCATGTCTCTAAAACTCTTCAAAACGAAGGTAATACTCGATATCTAGA
Found at i:68320947 original size:36 final size:36
Alignment explanation
Indices: 68320881--68320950 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
68320871 TTTCACCTCT
* **
68320881 GATTATAGTATATTTATCTTGCTTCAAAAAAAAAAA
1 GATTATAGTATATTTATCATGCTGAAAAAAAAAAAA
*
68320917 GATTATAGTATATTTATCATG-TGAATAAAAAAAA
1 GATTATAGTATATTTATCATGCTGAAAAAAAAAAA
68320951 TATAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 10 0.33
36 20 0.67
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.36
Consensus pattern (36 bp):
GATTATAGTATATTTATCATGCTGAAAAAAAAAAAA
Found at i:68325214 original size:18 final size:18
Alignment explanation
Indices: 68325191--68325228 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
68325181 AATATATATT
68325191 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
* *
68325209 AACCCAATTACGCAACCC
1 AACCCAAGTACCCAACCC
68325227 AA
1 AA
68325229 TCATAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.45, G:0.05, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:68325296 original size:20 final size:20
Alignment explanation
Indices: 68325257--68325294 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
68325247 ATTTAATAAA
68325257 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATCTAAAAC
*
68325277 TAAAATTAAAAAT-TAAAA
1 TAAAAATAAAAATCTAAAA
68325295 ACATATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
TAAAAATAAAAATCTAAAAC
Found at i:68325328 original size:9 final size:9
Alignment explanation
Indices: 68325314--68325372 Score: 91
Period size: 9 Copynumber: 6.6 Consensus size: 9
68325304 TTTATACAAA
68325314 TAATTCGGT
1 TAATTCGGT
68325323 TAATTCGGT
1 TAATTCGGT
68325332 TAATTCGGT
1 TAATTCGGT
* *
68325341 TAATTTGGG
1 TAATTCGGT
*
68325350 TAATTCGGG
1 TAATTCGGT
68325359 TAATTCGGT
1 TAATTCGGT
68325368 TAATT
1 TAATT
68325373 TTATACTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:68325889 original size:71 final size:70
Alignment explanation
Indices: 68325760--68326235 Score: 290
Period size: 71 Copynumber: 6.7 Consensus size: 70
68325750 TGGACTTGGA
* ** * * * *
68325760 AGCCTTAAGTTGACAGCTGGGAGCTTTTAACTCTTGCTAACTATGTTGGAGGCCGTGGTTTTGAA
1 AGCCTTAATTTGACAGCTGGGAGCTTTTAACTCTCACTAACTGTGTTAGAGGCTGTAGTTTTGAA
68325825 CCTGGT
66 CCT-GT
* * * * * *
68325831 AGCCATAATTTGGCAGCTGAGAGCTTTTAACTCTCACTAATTGTGTTAGAGGCTGTGGTTTTAAA
1 AGCCTTAATTTGACAGCTGGGAGCTTTTAACTCTCACTAACTGTGTTAGAGGCTGTAGTTTTGAA
68325896 CCTACG-
66 CCT--GT
* * * * *
68325902 AGCCTTAGTTTAACAGCTGGGAGTTTTTAACTCTCACTAACTATGTTTA-AAGCTGTAGTTTTGA
1 AGCCTTAATTTGACAGCTGGGAGCTTTTAACTCTCACTAACTGTG-TTAGAGGCTGTAGTTTTGA
* *
68325966 TCCTAT
65 ACCTGT
* * * *
68325972 GAGCCTTAATATGATAGTTGGGAG-TTTGTAACTCTCACTAACTGTGTTAGAGGTTGTAGTTTT-
1 -AGCCTTAATTTGACAGCTGGGAGCTTT-TAACTCTCACTAACTGTGTTAGAGGCTGTAGTTTTG
*
68326035 AATCCTGCG
64 AA-CCTG-T
** * * * * *
68326044 AGCCTTAATAAGATAGTTGGGAG-TTTGTAGCTCTTACTAACTGTGTTAGAGGCT-TCAATTTT-
1 AGCCTTAATTTGACAGCTGGGAGCTTT-TAACTCTCACTAACTGTGTTAGAGGCTGT-AGTTTTG
68326106 AATCCTACG-
64 AA-CCT--GT
* * * ** * *
68326115 AGCCTTAATGTGACAGCTAGGAG-TTTGCAACTCTTGCTAATTGTGTTGGAGGCTGCT-GTTTTG
1 AGCCTTAATTTGACAGCTGGGAGCTTT-TAACTCTCACTAACTGTGTTAGAGGCTG-TAGTTTTG
*
68326178 ATCCTACG-
64 AACCT--GT
* * * * * ** *
68326186 AACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGA
1 AGCCTTAATTTGACAGCTGGGAGCTTTTAACTCTCACTAACTGTGTTAGA
68326236 AGATACGGCT
Statistics
Matches: 327, Mismatches: 63, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
70 8 0.02
71 310 0.95
72 7 0.02
73 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.35
Consensus pattern (70 bp):
AGCCTTAATTTGACAGCTGGGAGCTTTTAACTCTCACTAACTGTGTTAGAGGCTGTAGTTTTGAA
CCTGT
Found at i:68326251 original size:213 final size:213
Alignment explanation
Indices: 68325851--68326409 Score: 552
Period size: 213 Copynumber: 2.6 Consensus size: 213
68325841 TGGCAGCTGA
* * * * * * *
68325851 GAGCTTTTAACTCTCACTAATTGTGTTAGAGGCTGT-GGTTTTAAACCTACGAGCCTTAGTTTAA
1 GAGCTTGTAACTCTCACTAACTGTGTTAGAGGCT-TCAGTTTTAATCCTACGAGCCTTAATATGA
* * * * * * *
68325915 CAGCTGGGAGTTTTTAACTCTCACTAACTATGTTTA-AAGCTG-TAGTTTTGATCCTATGAGCCT
65 CAGCTAGGAGTTTGTAACTCTCGCTAACTGTG-TTAGAGGCTGCT-GTTTTGATCCTACGAACCT
* * ** * * * * * * ** *
68325978 TAATATGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGTTGTAGTTTTAATCCTGC
128 TAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATACAGCTTTAATCCTGC
* ** *
68326043 GAGCCTTAATAAGATAGTTGG
193 GAGCCTTAATAAGACAACTAG
* * * * *
68326064 GAGTTTGTAGCTCTTACTAACTGTGTTAGAGGCTTCAATTTTAATCCTACGAGCCTTAATGTGAC
1 GAGCTTGTAACTCTCACTAACTGTGTTAGAGGCTTCAGTTTTAATCCTACGAGCCTTAATATGAC
* * * *
68326129 AGCTAGGAGTTTGCAACTCTTGCTAATTGTGTTGGAGGCTGCTGTTTTGATCCTACGAACCTTAA
66 AGCTAGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCTGTTTTGATCCTACGAACCTTAA
* *
68326194 TATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATACGGCTTTAATCTTGCGAG
131 TATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATACAGCTTTAATCCTGCGAG
*
68326259 CCTTAATATGACAACTAG
196 CCTTAATAAGACAACTAG
* * * ** *
68326277 GAGCTTGTAATTCTCGCTAACTGTGTTGGAGG-TTACAGTTTTAATCCCGCGAGCCTTAACATGA
1 GAGCTTGTAACTCTCACTAACTGTGTTAGAGGCTT-CAGTTTTAATCCTACGAGCCTTAATATGA
* * * * *
68326341 CAG-TTGAGAGTTTGTAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTT
65 CAGCTAG-GAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCTGTTTTGATCCTACGAACCTT
68326405 AATAT
129 AATAT
68326410 GACAGCTGGA
Statistics
Matches: 280, Mismatches: 61, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
212 7 0.03
213 272 0.97
214 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (213 bp):
GAGCTTGTAACTCTCACTAACTGTGTTAGAGGCTTCAGTTTTAATCCTACGAGCCTTAATATGAC
AGCTAGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCTGTTTTGATCCTACGAACCTTAA
TATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATACAGCTTTAATCCTGCGAG
CCTTAATAAGACAACTAG
Found at i:68326414 original size:71 final size:71
Alignment explanation
Indices: 68325858--68326416 Score: 483
Period size: 71 Copynumber: 7.9 Consensus size: 71
68325848 TGAGAGCTTT
* ** * * * * *
68325858 TAACTCTCACTAATTGTGTTAGAGGCTGTGGTTTTAAACCTACGAGCCTTAGTTTAACAGCTGGG
1 TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAGG
*
68325923 AGTTTT
66 AGTTTG
* * * * * * * *
68325929 TAACTCTCACTAACTATGTTTA-AAGCTGTAGTTTTGATCCTATGAGCCTTAATATGATAGTTGG
1 TAACTCTCACTAACTGTG-TTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAG
68325993 GAGTTTG
65 GAGTTTG
* * * * * * *
68326000 TAACTCTCACTAACTGTGTTAGAGGTTGTAGTTTTAATCCTGCGAGCCTTAATAAGATAGTTGGG
1 TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAGG
68326065 AGTTTG
66 AGTTTG
* * * * *
68326071 TAGCTCTTACTAACTGTGTTAGAGGCTTCAATTTTAATCCTACGAGCCTTAATGTGACAGCTAGG
1 TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAGG
68326136 AGTTTG
66 AGTTTG
* ** * * * * * * *
68326142 CAACTCTTGCTAATTGTGTTGGAGGCTGCTGTTTTGATCCTACGAACCTTAATATAACAACTAGG
1 TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAGG
*
68326207 AGCTTG
66 AGTTTG
* * * * * * * * * *
68326213 CAACTCTCACTAACTATGTTAGAAGATACGGCTTTAATCTTGCGAGCCTTAATATGACAACTAGG
1 TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAGG
*
68326278 AGCTTG
66 AGTTTG
* * * * * ** * *
68326284 TAATTCTCGCTAACTGTGTTGGAGGTTACAGTTTTAATCCCGCGAGCCTTAACATGACAG-TTGA
1 TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAG-
68326348 GAGTTTG
65 GAGTTTG
** * * * * *
68326355 TAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCT
1 TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCT
68326417 GGAAGCCTTA
Statistics
Matches: 396, Mismatches: 88, Indels: 7
0.81 0.18 0.01
Matches are distributed among these distances:
70 5 0.01
71 387 0.98
72 4 0.01
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (71 bp):
TAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAATCCTACGAGCCTTAATATGACAGCTAGG
AGTTTG
Found at i:68326487 original size:92 final size:92
Alignment explanation
Indices: 68326328--68326512 Score: 264
Period size: 92 Copynumber: 2.0 Consensus size: 92
68326318 TAATCCCGCG
** * *
68326328 AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAACTGTGTTAGAGGCTGCGGTTTTGAT
1 AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAAT
68326393 CCT-TCAAACCTTAATATGACAGCTGGA
66 CCTGT-AAACCTTAATATGACAGCTGGA
* * * * *
68326420 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
1 AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAAT
*
68326485 CCTGTAAGCCTTAATATGACAGCTGGA
66 CCTGTAAACCTTAATATGACAGCTGGA
68326512 A
1 A
68326513 TTTTGTAACT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 81 0.99
93 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (92 bp):
AGCCTTAACATGACAGTTGAGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAGTTTTAAT
CCTGTAAACCTTAATATGACAGCTGGA
Found at i:68326532 original size:163 final size:163
Alignment explanation
Indices: 68326257--68326556 Score: 404
Period size: 163 Copynumber: 1.8 Consensus size: 163
68326247 TAATCTTGCG
* * *
68326257 AGCCTTAATATGACAACTAGGAGCTTGTAATTCTCGCTAACTGTGTTGGAGGTTACAGTTTTAAT
1 AGCCTTAATATGACAACTAGGAGCTTGTAACTCTCACTAACTGTGTTGGAGGCTACAGTTTTAAT
* * *
68326322 CCCGCGAGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAACTGTGTTAGAGGCTGCGGT
66 CCCGCAAGCCTTAACATGACAGTGGAGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCGGT
68326387 TTTGATCCTTCAAACCTTAATATGACAGCTGGA
131 TTTGATCCTTCAAACCTTAATATGACAGCTGGA
* ** * * * *
68326420 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
1 AGCCTTAATATGACAACTAGGAGCTTGTAACTCTCACTAACTGTGTTGGAGGCTACAGTTTTAAT
* * * * * * *
68326485 CCTGTAAGCCTTAATATGACAGCTGGA-ATTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTGG
66 CCCGCAAGCCTTAACATGACAG-TGGAGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCGG
68326549 TTTTGATC
130 TTTTGATC
68326557 TTGTGAGCCT
Statistics
Matches: 116, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
163 113 0.97
164 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (163 bp):
AGCCTTAATATGACAACTAGGAGCTTGTAACTCTCACTAACTGTGTTGGAGGCTACAGTTTTAAT
CCCGCAAGCCTTAACATGACAGTGGAGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCGGT
TTTGATCCTTCAAACCTTAATATGACAGCTGGA
Found at i:68326536 original size:71 final size:71
Alignment explanation
Indices: 68326419--68326829 Score: 317
Period size: 71 Copynumber: 5.8 Consensus size: 71
68326409 TGACAGCTGG
* * * * *
68326419 AAGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
68326484 TCCTGT
66 TCCTGT
* * * * ** *
68326490 AAGCCTTAATATGACAGCTGGAATTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTGGTTTTGA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
*
68326555 TCTTGT
66 TCCTGT
* * * * * * * * *
68326561 GAGCCTTAATGTGACAGCTAGGAATTTGCAACTTTCGCTAACTGTGTTGGAGGCTGCGGTTTTTA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
*
68326626 TCGTGT
66 TCCTGT
* * * * ** ** * *
68326632 GAGCCTTAATGTGACAGTTTGGCA-TTTACAACAATCGTTACCTGTGTTAGAGGCTTTG-A-TTT
1 AAGCCTTAATATGACAG-CTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGC--TGCAGTTT
* *
68326694 TGATCCTGC
63 TAATCCTGT
* * * ** * *
68326703 GAGTCTTAATATGACAGCTGGGAGTTTGTAACTCTTGCTAA-TGTGTTAGAGATTGTAATTTTAA
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
* **
68326767 TACTAC
66 TCCTGT
* * * * *
68326773 AGGTCTTAATATGATAGTTGGGAGTTTGTAACTCTTGCTAACTGTGTTAGAGGCTGC
1 AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGC
68326830 GGTACTGAAC
Statistics
Matches: 275, Mismatches: 58, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
68 2 0.01
69 1 0.00
70 60 0.22
71 207 0.75
72 3 0.01
73 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (71 bp):
AAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAACTGTGTTAGAGGCTGCAGTTTTAA
TCCTGT
Found at i:68326679 original size:305 final size:304
Alignment explanation
Indices: 68326115--68326723 Score: 652
Period size: 305 Copynumber: 2.0 Consensus size: 304
68326105 TAATCCTACG
* ** * *
68326115 AGCCTTAATGTGACAGCTAGGAGTTTGCAACTCTTGCTAATTGTGTTGGAGGCTGCTGTTTTGAT
1 AGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
68326180 CCTACGAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATACGGC
66 CCTA-GAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATACGGC
* * *
68326245 TTTAATCTTGCGAGCCTTAATATGACAACTAGGAGCTTGTAATTCTCGCTAACTGTGTTGGAGGT
130 TTTAATCTTGCGAGCCTTAATATGACAACTAGGAACTTGCAATTCTCGCTAACTGTGTTGGAGGC
** ** *
68326310 TACAGTTTTAATCCCGCGAGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAACTGTGTT
195 TACAGTTTTAATCCCGCGAGCCTTAACATGACAGTTGAGAGTTTACAACAATCGCTAACTGTGTT
* *
68326375 AGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
260 AGAGGCTGCGATTTTGATCCTGCAAACCTTAATATGACAGCTGGA
* * * *
68326420 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
1 AGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
* * ** * * * * * * **
68326485 CCT-GTAAGCCTTAATATGACAGCT-GGAATTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTG
66 CCTAG-AA-CCTTAATATAACAACTAGG-AGCTTGCAACTCTCACTAACTATGTTAGAAGATACG
* * * * * *
68326548 GTTTTGATCTTGTGAGCCTTAATGTGACAGCTAGGAATTTGCAACTT-TCGCTAACTGTGTTGGA
128 GCTTTAATCTTGCGAGCCTTAATATGACAACTAGGAACTTGCAA-TTCTCGCTAACTGTGTTGGA
* * * ** * ** * *
68326612 GGCTGCGGTTTTTATCGTGTGAGCCTTAATGTGACAGTTTG-GCA-TTTACAACAATCGTTACCT
192 GGCTACAGTTTTAATCCCGCGAGCCTTAACATGACAG-TTGAG-AGTTTACAACAATCGCTAACT
** * **
68326675 GTGTTAGAGGCTTTGATTTTGATCCTGCGAGTCTTAATATGACAGCTGG
255 GTGTTAGAGGCTGCGATTTTGATCCTGCAAACCTTAATATGACAGCTGG
68326724 GAGTTTGTAA
Statistics
Matches: 246, Mismatches: 52, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
303 1 0.00
304 4 0.02
305 235 0.96
306 6 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (304 bp):
AGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
CCTAGAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGATACGGCT
TTAATCTTGCGAGCCTTAATATGACAACTAGGAACTTGCAATTCTCGCTAACTGTGTTGGAGGCT
ACAGTTTTAATCCCGCGAGCCTTAACATGACAGTTGAGAGTTTACAACAATCGCTAACTGTGTTA
GAGGCTGCGATTTTGATCCTGCAAACCTTAATATGACAGCTGGA
Found at i:68326695 original size:142 final size:141
Alignment explanation
Indices: 68326420--68326749 Score: 360
Period size: 142 Copynumber: 2.3 Consensus size: 141
68326410 GACAGCTGGA
* * * *
68326420 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTTTCGCTAA-TGTGTTGGAGGCTGCAGTTTTAAT
** ** * *
68326485 CCTGTAAGCCTTAATATGACAGCTGGAATTTTGTAACTCTCGCTAACTGTGTTGGAGGTTGTGGT
65 CCTGTAAGCCTTAATATGACAGCTGGAATTTTACAACAATCGCTAACTGTGTTAGAGGTTGTGAT
* *
68326550 TTTGATCTTGTG
130 TTTGATCCTGCG
* * * * * *
68326562 AGCCTTAATGTGACAGCTAGGAATTTGCAACTTTCGCTAACTGTGTTGGAGGCTGCGGTTTTTAT
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACTTTCGCTAA-TGTGTTGGAGGCTGCAGTTTTAAT
* * * * * * *
68326627 CGTGTGAGCCTTAATGTGACAGTTTGGCA-TTTACAACAATCGTTACCTGTGTTAGAGGCTT-TG
65 CCTGTAAGCCTTAATATGACAG-CTGGAATTTTACAACAATCGCTAACTGTGTTAGAGG-TTGTG
68326690 ATTTTGATCCTGCG
128 ATTTTGATCCTGCG
*
68326704 AGTCTTAATATGACAGCTGGGAGTTTGTAACTCTT-GCTAATGTGTT
1 AGCCTTAATATGACAGCTGGGAGTTTGTAACT-TTCGCTAATGTGTT
68326750 AGAGATTGTA
Statistics
Matches: 154, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
141 6 0.04
142 140 0.91
143 8 0.05
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (141 bp):
AGCCTTAATATGACAGCTGGGAGTTTGTAACTTTCGCTAATGTGTTGGAGGCTGCAGTTTTAATC
CTGTAAGCCTTAATATGACAGCTGGAATTTTACAACAATCGCTAACTGTGTTAGAGGTTGTGATT
TTGATCCTGCG
Found at i:68326737 original size:376 final size:375
Alignment explanation
Indices: 68326044--68326753 Score: 825
Period size: 376 Copynumber: 1.9 Consensus size: 375
68326034 TAATCCTGCG
* * *
68326044 AGCCTTAATAAGATAGTTGGGAGTTTGTAGCTCTTACTAACTGTGTTAGAGGCTTCAATTTTAAT
1 AGCCTTAATAAGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAATTTTAAT
* * * *
68326109 CCTACGAGCCTTAATGTGACAGCTAGGAGTTTGCAACTCTTGCTAATTGTGTTGGAGGCTGCTGT
66 CCTACAAGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCGCTAACTGTGTTGGAGGCTGCTGT
*
68326174 TTTGATCCTACGAACCTTAATATAACAACTAGGAGCTTGCAACTCTCACTAACTATGTTAGAAGA
131 TTTGATCCTACGAACCTTAATATAACAACTAGGAACTTGCAACTCTCACTAACTATGTTAGAAGA
* ** ***
68326239 TACGGCTTTAATCTTGCGAGCCTTAATATGACAACTAGGAGCTTGTAATTCTCGCTAACTGTGTT
196 TACGGCTTTAATCGTGCGAGCCTTAATATGACAACTAGGAGCTTACAACAATCGCTAACTGTGTT
* *
68326304 GGAGGTTACAGTTTTAATCCCGCGAGCCTTAACATGACAGTTGAGAGTTTGTAACTCTGGCTAAC
261 AGAGGTTACAGTTTTAATCCCGCGAGCCTTAACATGACAGCTGAGAGTTTGTAACTCTGGCTAA-
68326369 TGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
325 TGTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
* * * *
68326420 AGCCTTAATATGATAGTTGGGAGTTTGTAACTCTCACTAATTGTGTTGGAGGCTGCAGTTTTAAT
1 AGCCTTAATAAGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAATTTTAAT
** * * *
68326485 CCTGTAAGCCTTAATATGACAGCT-GGAATTTTGTAACTCTCGCTAACTGTGTTGGAGGTTG-TG
66 CCTACAAGCCTTAATATGACAGCTAGG-AGTTTGCAACTCTCGCTAACTGTGTTGGAGGCTGCT-
* ** * * * * * * * * * *
68326548 GTTTTGATCTTGTGAGCCTTAATGTGACAGCTAGGAATTTGCAACTTTCGCTAACTGTGTTGGAG
129 GTTTTGATCCTACGAACCTTAATATAACAACTAGGAACTTGCAACTCTCACTAACTATGTTAGAA
* * * * * * ** * * * *
68326613 GCTGCGGTTTTTATCGTGTGAGCCTTAATGTGACAGTTTGGCA-TTTACAACAATCGTTACCTGT
194 GATACGGCTTTAATCGTGCGAGCCTTAATATGACAACTAGG-AGCTTACAACAATCGCTAACTGT
** * * * * * *
68326677 GTTAGAGGCTTTGA-TTTTGATCCTGCGAGTCTTAATATGACAGCTGGGAGTTTGTAACTCTTGC
258 GTTAGAGG-TTACAGTTTTAATCCCGCGAGCCTTAACATGACAGCTGAGAGTTTGTAACTCTGGC
68326741 TAATGTGTTAGAG
322 TAATGTGTTAGAG
68326754 ATTGTAATTT
Statistics
Matches: 272, Mismatches: 58, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
375 13 0.05
376 255 0.94
377 4 0.01
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (375 bp):
AGCCTTAATAAGATAGTTGGGAGTTTGTAACTCTCACTAACTGTGTTAGAGGCTGCAATTTTAAT
CCTACAAGCCTTAATATGACAGCTAGGAGTTTGCAACTCTCGCTAACTGTGTTGGAGGCTGCTGT
TTTGATCCTACGAACCTTAATATAACAACTAGGAACTTGCAACTCTCACTAACTATGTTAGAAGA
TACGGCTTTAATCGTGCGAGCCTTAATATGACAACTAGGAGCTTACAACAATCGCTAACTGTGTT
AGAGGTTACAGTTTTAATCCCGCGAGCCTTAACATGACAGCTGAGAGTTTGTAACTCTGGCTAAT
GTGTTAGAGGCTGCGGTTTTGATCCTTCAAACCTTAATATGACAGCTGGA
Found at i:68328746 original size:14 final size:15
Alignment explanation
Indices: 68328727--68328761 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
68328717 AAAAATTGAA
68328727 AAAAAATTC-AAGGT
1 AAAAAATTCGAAGGT
*
68328741 AAAAAATTCGAAGTT
1 AAAAAATTCGAAGGT
68328756 AAAAAA
1 AAAAAA
68328762 ATAATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.63, C:0.06, G:0.11, T:0.20
Consensus pattern (15 bp):
AAAAAATTCGAAGGT
Found at i:68328746 original size:15 final size:16
Alignment explanation
Indices: 68328726--68328763 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
68328716 AAAAAATTGA
68328726 AAAAAAATTC-AAGGT
1 AAAAAAATTCGAAGGT
*
68328741 -AAAAAATTCGAAGTT
1 AAAAAAATTCGAAGGT
68328756 AAAAAAAT
1 AAAAAAAT
68328764 AATTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 9 0.45
15 4 0.20
16 7 0.35
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (16 bp):
AAAAAAATTCGAAGGT
Found at i:68328762 original size:18 final size:18
Alignment explanation
Indices: 68328741--68328783 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
68328731 AATTCAAGGT
*
68328741 AAAA-AATTCGAAGTTAAA
1 AAAATAATT-GAAATTAAA
*
68328759 AAAATAATTTAAATTAAA
1 AAAATAATTGAAATTAAA
68328777 AAAATAA
1 AAAATAA
68328784 AAAAAATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (18 bp):
AAAATAATTGAAATTAAA
Found at i:68329672 original size:21 final size:21
Alignment explanation
Indices: 68329648--68329692 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68329638 TGTTGATGAG
*
68329648 AGAGAATGAAAGAAAAATAAA
1 AGAGAATGAAAGAAAAAGAAA
** *
68329669 AGAGTTTGAGAGAAAAAGAAA
1 AGAGAATGAAAGAAAAAGAAA
68329690 AGA
1 AGA
68329693 AATTGAAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.11
Consensus pattern (21 bp):
AGAGAATGAAAGAAAAAGAAA
Found at i:68329698 original size:21 final size:20
Alignment explanation
Indices: 68329657--68329702 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
68329647 GAGAGAATGA
* **
68329657 AAGAAAAATAAAAGAGTTTG
1 AAGAAAAAGAAAAGAAATTG
68329677 AGAGAAAAAGAAAAGAAATTG
1 A-AGAAAAAGAAAAGAAATTG
68329698 AAGAA
1 AAGAA
68329703 GAGAAAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.13
Consensus pattern (20 bp):
AAGAAAAAGAAAAGAAATTG
Found at i:68330331 original size:13 final size:13
Alignment explanation
Indices: 68330313--68330337 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68330303 GTAAGTGATT
68330313 TTGATGATTTTTC
1 TTGATGATTTTTC
68330326 TTGATGATTTTT
1 TTGATGATTTTT
68330338 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:68331273 original size:140 final size:140
Alignment explanation
Indices: 68331046--68331300 Score: 347
Period size: 140 Copynumber: 1.8 Consensus size: 140
68331036 TGTGCTAGTG
* *
68331046 TAAGACATGTCTGGGACATGCATTGGACACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGGACACA-TATGAGAGCCAGTGTAAGACCATGTCTAGGACA
* **
68331111 TGGCATCGGCATTGAGATGAGAGATAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGTGAC
65 TGGCATCGACACGGAGATGAGAGATAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGTGAC
68331175 GTAAGCCAGTA
130 GTAAGCCAGTA
* *
68331186 TAAGACATGTCTGGGACATGCATCGG-CTA-A-ATGATGTGTCAGTGTAAGACCATGTCTAGGAC
1 TAAGACATGTCTGGGACATGCATCGGAC-ACATATGA-GAGCCAGTGTAAGACCATGTCTAGGAC
* * *
68331248 ATGGCATTGACACGGATATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATG
64 ATGGCATCGACACGGAGA--TGAGAGATAGTGTAAGACCATGTCTGGGACATG
68331301 GTGTCGGCTT
Statistics
Matches: 100, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
137 4 0.04
138 37 0.37
139 2 0.02
140 42 0.42
141 15 0.15
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
TAAGACATGTCTGGGACATGCATCGGACACATATGAGAGCCAGTGTAAGACCATGTCTAGGACAT
GGCATCGACACGGAGATGAGAGATAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGTGACG
TAAGCCAGTA
Found at i:68331342 original size:49 final size:47
Alignment explanation
Indices: 68331042--68331401 Score: 239
Period size: 47 Copynumber: 7.6 Consensus size: 47
68331032 TATGTGTGCT
*
68331042 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGACACATT-AT-GA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG--AC-TTGATGGATGAGCC
* **
68331088 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--GATGAGAGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATGGAT--GAGCC
* * *
68331136 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCG-T-GACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGA--TGAGCC
* * ** * *
68331182 AGTATAAGA-CATGTCTGGGACAT-GCATCGGCTAAAT-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
* * ** *
68331226 AGTGTAAGACCATGTCTAGGACATGGCATTGACACGGATATGTGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTG--ATG-GATGAGCC
** * * *
68331276 AGTGTAAGACCATGTCTGGGACATGGTGTCGGCTTCGATTTTGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT-GA--TGGATGAGCC
68331325 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
*
68331372 AGTGTAAGACCATGTCTGGGACGTGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
68331402 AACATTATAC
Statistics
Matches: 249, Mismatches: 42, Indels: 45
0.74 0.12 0.13
Matches are distributed among these distances:
44 11 0.04
45 22 0.09
46 61 0.24
47 64 0.26
48 19 0.08
49 38 0.15
50 32 0.13
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
Found at i:68334352 original size:5 final size:5
Alignment explanation
Indices: 68334342--68334368 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
68334332 AATTTTTGTG
68334342 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
68334369 TCACAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:68336166 original size:51 final size:51
Alignment explanation
Indices: 68336088--68336234 Score: 181
Period size: 49 Copynumber: 2.9 Consensus size: 51
68336078 TGTGAGGTCG
* *
68336088 CATGTGTAGTACTATGTGTAGGCTACTATGCGTACCTGATAACTTTGATCA
1 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAACTTTGATCA
* * * * * *
68336139 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGTCG
1 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAACTTTGATCA
* * *
68336188 CATGTGTAGTACTATGTGCAGACTACTATGCATACCAGATAGCTTTG
1 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAACTTTG
68336235 GCTACAAGTG
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 40 0.51
51 39 0.49
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (51 bp):
CATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAACTTTGATCA
Found at i:68342399 original size:75 final size:75
Alignment explanation
Indices: 68342294--68342434 Score: 194
Period size: 75 Copynumber: 1.9 Consensus size: 75
68342284 TTTTGTGGGA
* * * *
68342294 TAAATGCATCTTTGATTAATGTCTTGCATTAATACATTTGCA-TCTTTAGAAACTTGCATTAAGT
1 TAAATACATCATTGATTAATGTCTTGCATTAATACACTAGCATTCTTTA-AAACTTGCATTAAGT
68342358 GTCTTGTTTAT
65 GTCTTGTTTAT
* * * *
68342369 TAAATACATCATTGTTTAATGTTTTGCATTAATACACTAGCATTCTTTAATACTTGCATTATGTG
1 TAAATACATCATTGATTAATGTCTTGCATTAATACACTAGCATTCTTTAAAACTTGCATTAAGTG
68342434 T
66 T
68342435 TCTTCATATT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
75 51 0.89
76 6 0.11
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.45
Consensus pattern (75 bp):
TAAATACATCATTGATTAATGTCTTGCATTAATACACTAGCATTCTTTAAAACTTGCATTAAGTG
TCTTGTTTAT
Found at i:68348051 original size:40 final size:40
Alignment explanation
Indices: 68348011--68348085 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
68348001 ATTTGTTTGA
* *
68348011 AAATCATTTTGA--TGTGTTAAAATGATTTTAACTTGGTTG
1 AAATCATTTTGACTTG-GTTAAAATCAATTTAACTTGGTTG
*
68348050 AAGTCATTTTGACTTGGTTAAAATCAATTTAACTTG
1 AAATCATTTTGACTTGGTTAAAATCAATTTAACTTG
68348086 ATTTTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 11 0.35
40 18 0.58
41 2 0.06
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (40 bp):
AAATCATTTTGACTTGGTTAAAATCAATTTAACTTGGTTG
Found at i:68348084 original size:20 final size:20
Alignment explanation
Indices: 68348026--68348085 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
68348016 ATTTTGATGT
*
68348026 GTTAAAATGATTTTAACTTG
1 GTTAAAATCATTTTAACTTG
* * *
68348046 GTTGAAGTCATTTTGACTTG
1 GTTAAAATCATTTTAACTTG
*
68348066 GTTAAAATCAATTTAACTTG
1 GTTAAAATCATTTTAACTTG
68348086 ATTTTAAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (20 bp):
GTTAAAATCATTTTAACTTG
Found at i:68348175 original size:28 final size:28
Alignment explanation
Indices: 68348144--68348200 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
68348134 AAATTTTATC
*
68348144 TCTTATACTTCAAATTTAAAAATCATTT
1 TCTTATACTTCAAATTTAAAAACCATTT
68348172 TCTTATACTTCAAATTTAAAAACCATTT
1 TCTTATACTTCAAATTTAAAAACCATTT
68348200 T
1 T
68348201 GTCAATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.46
Consensus pattern (28 bp):
TCTTATACTTCAAATTTAAAAACCATTT
Found at i:68349771 original size:33 final size:33
Alignment explanation
Indices: 68349734--68349800 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
68349724 AATCAAGGAG
*
68349734 GAGATAATGGAGGATTTTTAGGGAGAGATTTAA
1 GAGATAATGGAGGATTTTTAGGAAGAGATTTAA
*
68349767 GAGATAATGGAGGATTTTTATGAAGAGATTTAA
1 GAGATAATGGAGGATTTTTAGGAAGAGATTTAA
68349800 G
1 G
68349801 GGAGGAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.31
Consensus pattern (33 bp):
GAGATAATGGAGGATTTTTAGGAAGAGATTTAA
Found at i:68353375 original size:20 final size:20
Alignment explanation
Indices: 68353333--68353387 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
68353323 AACCCTAGTG
* **
68353333 GTATCGATATTTTTCCACGA
1 GTATCGATATTTTTACAAAA
*
68353353 GTATCGATATTTTTATAAAA
1 GTATCGATATTTTTACAAAA
*
68353373 GTATCAATATTTTTA
1 GTATCGATATTTTTA
68353388 AATTGGTATC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (20 bp):
GTATCGATATTTTTACAAAA
Found at i:68367197 original size:30 final size:30
Alignment explanation
Indices: 68367162--68367230 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
68367152 ATGGGGCTGA
*
68367162 CCGTGTGTCACACACGGCCTAGACACATGC
1 CCGTGTGTCACACACAGCCTAGACACATGC
68367192 CCGTGTGTCACACACAGCCTAGACACATGC
1 CCGTGTGTCACACACAGCCTAGACACATGC
68367222 CCGTGTGTC
1 CCGTGTGTC
68367231 TACCCGTGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.22, C:0.36, G:0.23, T:0.19
Consensus pattern (30 bp):
CCGTGTGTCACACACAGCCTAGACACATGC
Found at i:68368516 original size:47 final size:45
Alignment explanation
Indices: 68368453--68368712 Score: 154
Period size: 47 Copynumber: 5.5 Consensus size: 45
68368443 ATGATAGCCC
*
68368453 GTGTAAGACCACGTCTGGGACATGGCATCGACATAGAGGTGAGTGCCA
1 GTGTAAGACCATGTCTGGGACAT-GCATCGACATAGA--TGAGTGCCA
* * *
68368501 GTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCA
1 GTGTAAGACCATGTCTGGGACATGCATCGACATAGATGA-G-T-GCCA
* * * * * *
68368548 ATGTAAGA-CGTGTCTAGGACATGCATC-AGC-TAAGTTTCA-TGCTA
1 GTGTAAGACCATGTCTGGGACATGCATCGA-CAT-AG-ATGAGTGCCA
* * * * *
68368592 GTGTAAGA-CATGTCTGGGACATGCATTAGCACGCATACAAGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGCA-TCG-A--CATAGATGAGTGCCA
* * *
68368640 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGAGATAGCCA
1 GTGTAAGACCATGTCTGGGACAT-GCATCGACATAGAT-GAG-T-GCCA
*
68368689 GCGTAAGACCATGTCTGGGACATG
1 GTGTAAGACCATGTCTGGGACATG
68368713 GCAGCGGCAA
Statistics
Matches: 165, Mismatches: 30, Indels: 34
0.72 0.13 0.15
Matches are distributed among these distances:
44 28 0.17
45 3 0.02
46 15 0.09
47 48 0.29
48 26 0.16
49 42 0.25
50 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
GTGTAAGACCATGTCTGGGACATGCATCGACATAGATGAGTGCCA
Found at i:68368523 original size:94 final size:94
Alignment explanation
Indices: 68368362--68368712 Score: 302
Period size: 94 Copynumber: 3.7 Consensus size: 94
68368352 AGAGCTAGTA
* ** * * ** *
68368362 TAAGACCATGTCTAGGACATGGCATCAGCATTGAGACGAGGGCTAGTGTAAGATGTGTCTGGTAC
1 TAAGACCATGTCTAGGACATGGCATCAGCATAGAGGTGAGTGCCAGTGTAAGACATGTCTGGGAC
* *
68368427 ATGCATCATCCGCATCATGATAGCCCGTG
66 ATGCATCAGCCGCATCATGATAGCCAGTG
* *
68368456 TAAGACCACGTCTGGGACATGGCATC-GACATAGAGGTGAGTGCCAGTGTAAGACATGTCTGGGA
1 TAAGACCATGTCTAGGACATGGCATCAG-CATAGAGGTGAGTGCCAGTGTAAGACATGTCTGGGA
* * * * *
68368520 CATGCATCGGCCTCGATGATGTTAGCCAATG
65 CATGCATCAGCCGC-ATCATGATAGCCAGTG
* * * *
68368551 TAAGA-CGTGTCTAGGACAT-GCATCAGC-TA-AGTTTCA-TGCTAGTGTAAGACATGTCTGGGA
1 TAAGACCATGTCTAGGACATGGCATCAGCATAGAG-GTGAGTGCCAGTGTAAGACATGTCTGGGA
* * * *
68368611 CATGCATTAGCACGCATACAAGAGAGCTAGTG
65 CATGCATCAGC-CGCAT-CATGATAGCCAGTG
* * * * * *
68368643 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATG-GAGATAGCCAGCGTAAGACCATGTCTGG
1 TAAGACCATGTCTAGGACATGGCATCAGCATAGAGGTGAG-T-GCCAGTGTAAGA-CATGTCTGG
68368707 GACATG
63 GACATG
68368713 GCAGCGGCAA
Statistics
Matches: 202, Mismatches: 41, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
91 36 0.18
92 19 0.09
93 19 0.09
94 83 0.41
95 18 0.09
96 2 0.01
97 10 0.05
98 15 0.07
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (94 bp):
TAAGACCATGTCTAGGACATGGCATCAGCATAGAGGTGAGTGCCAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCGCATCATGATAGCCAGTG
Found at i:68368612 original size:44 final size:46
Alignment explanation
Indices: 68368497--68368712 Score: 154
Period size: 49 Copynumber: 4.6 Consensus size: 46
68368487 AGAGGTGAGT
* *
68368497 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AAGATGTTA
* * *
68368544 GCCAATGTAAGACGTGTCTAGGACATGCATCAG-CT-AAG-T-TTCA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTT-A
* * * * * **
68368587 TGCTAGTGTAAGACATGTCTGGGACATGCATTAGCACGCATACAAGAGA
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCAGC-CTCA-AGATGTTA
* * * *
68368636 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA-GATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTC-A-AGATGTTA
*
68368685 GCCAGCGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
68368713 GCAGCGGCAA
Statistics
Matches: 135, Mismatches: 23, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
42 2 0.01
43 2 0.01
44 30 0.22
46 3 0.02
47 30 0.22
48 14 0.10
49 45 0.33
50 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTTA
Found at i:68369556 original size:55 final size:55
Alignment explanation
Indices: 68369464--68369594 Score: 149
Period size: 55 Copynumber: 2.4 Consensus size: 55
68369454 CTTAAACTTT
** * * *
68369464 TAAA-TCAGTATTTTCCACGGTTAGGCCACACGGGCATGTGCCATAGTCGTG-AC
1 TAAAGTCAGTATTGCCCACGGGTAGGCCACACGAGCATGTGCCATAGCCGTGCAC
* * *
68369517 TATAAGTCAGTATTGCCCACGGGTAGGCCACACGAGCATGTGTCATGGCCGTGCCC
1 TA-AAGTCAGTATTGCCCACGGGTAGGCCACACGAGCATGTGCCATAGCCGTGCAC
* *
68369573 TAAAGTCAGTGTTGCACACGGG
1 TAAAGTCAGTATTGCCCACGGG
68369595 CTGAGGTCGT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.03
54 2 0.03
55 58 0.89
56 3 0.05
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (55 bp):
TAAAGTCAGTATTGCCCACGGGTAGGCCACACGAGCATGTGCCATAGCCGTGCAC
Found at i:68372692 original size:27 final size:27
Alignment explanation
Indices: 68372652--68372703 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
68372642 CCATGAAGTC
68372652 TAACAACCTCTGAAATGTACAAATCAG
1 TAACAACCTCTGAAATGTACAAATCAG
*
68372679 TAACAACCTTTGAAATGTACAAATC
1 TAACAACCTCTGAAATGTACAAATC
68372704 GGCTAACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (27 bp):
TAACAACCTCTGAAATGTACAAATCAG
Found at i:68379733 original size:153 final size:153
Alignment explanation
Indices: 68379455--68379762 Score: 589
Period size: 153 Copynumber: 2.0 Consensus size: 153
68379445 TTTCCAAAAT
68379455 GAAGCTCAATTACAATAAAATACACTTGAGCAAAAGAATAAAAATAAAGATCACAAGTGTATATA
1 GAAGCTCAATTACAATAAAATACACTTGAGCAAAAGAATAAAAATAAAGATCACAAGTGTATATA
*
68379520 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTGCTTGAAAGTGCTTT
66 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTCCTTGAAAGTGCTTT
*
68379585 CTTATCGCTATAGATCTTTGGAG
131 CTTATCACTATAGATCTTTGGAG
68379608 GAAGCTCAATTACAATAAAATACACTTGAGCAAAAGAATAAAAATAAAGATCACAAGTGTATATA
1 GAAGCTCAATTACAATAAAATACACTTGAGCAAAAGAATAAAAATAAAGATCACAAGTGTATATA
68379673 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTCCTTGAAAGTGCTTT
66 AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTCCTTGAAAGTGCTTT
*
68379738 CTTATCACTATAGGTCTTTGGAG
131 CTTATCACTATAGATCTTTGGAG
68379761 GA
1 GA
68379763 TGGTATTTAT
Statistics
Matches: 152, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (153 bp):
GAAGCTCAATTACAATAAAATACACTTGAGCAAAAGAATAAAAATAAAGATCACAAGTGTATATA
AGAAGAATATGAATGTATTAAGCTCTAAGGTTGCTTGATTGATAATTTTTCCTTGAAAGTGCTTT
CTTATCACTATAGATCTTTGGAG
Found at i:68381536 original size:93 final size:93
Alignment explanation
Indices: 68381408--68381579 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
68381398 GCCCATAAGT
* * * *
68381408 GAACTCGGACTCAACTCGACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACCCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68381473 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
68381501 GAACTCAGACTCAACCCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACCCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
68381565 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
68381580 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACCCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:68381575 original size:46 final size:45
Alignment explanation
Indices: 68381400--68381574 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
68381390 TGTAACCTGC
* *
68381400 CCATAAGTGAACTCGGACTCAACTCGACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
68381446 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * * *
68381492 ACATCTCTCGAACTCAGACTCAACCCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
68381539 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
68381575 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 64 0.61
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:68383002 original size:19 final size:20
Alignment explanation
Indices: 68382959--68383043 Score: 100
Period size: 20 Copynumber: 4.2 Consensus size: 20
68382949 GCCTAGAGAA
* *
68382959 ATTTTGACTTGTTTGAAAATC
1 ATTTTGATTTGGTT-AAAATC
* *
68382980 ATTTTGATAT-GTTAAAATG
1 ATTTTGATTTGGTTAAAATC
* *
68382999 ATTTTAATTTGGTTGAAATC
1 ATTTTGATTTGGTTAAAATC
68383019 ATTTTGATTTGGTTAAAATC
1 ATTTTGATTTGGTTAAAATC
68383039 ATTTT
1 ATTTT
68383044 AACTTGATTT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
19 13 0.25
20 32 0.60
21 8 0.15
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.51
Consensus pattern (20 bp):
ATTTTGATTTGGTTAAAATC
Found at i:68383003 original size:40 final size:41
Alignment explanation
Indices: 68382959--68383064 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
68382949 GCCTAGAGAA
* *
68382959 ATTTTGACTTGTTTGAAAATCATTTTGATAT-GTTAAAATG
1 ATTTTAACTTGTTTGAAAATCATTTTGATATGGTTAAAATC
* * *
68382999 ATTTTAATTTGGTTG-AAATCATTTTGATTTGGTTAAAATC
1 ATTTTAACTTGTTTGAAAATCATTTTGATATGGTTAAAATC
* *
68383039 ATTTTAACTTGATTTTAAAATTATTT
1 ATTTTAACTTG-TTTGAAAATCATTT
68383065 GAAAATTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
39 14 0.26
40 30 0.56
41 2 0.04
42 8 0.15
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (41 bp):
ATTTTAACTTGTTTGAAAATCATTTTGATATGGTTAAAATC
Found at i:68387354 original size:15 final size:15
Alignment explanation
Indices: 68387316--68387357 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
68387306 ATGGTAGCAT
*
68387316 AACAAAACAGAACAA
1 AACAAAATAGAACAA
*
68387331 AACCAAAATAGAATAA
1 AA-CAAAATAGAACAA
68387347 AACAAAATAGA
1 AACAAAATAGA
68387358 GTAGAATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.71, C:0.14, G:0.07, T:0.07
Consensus pattern (15 bp):
AACAAAATAGAACAA
Found at i:68388630 original size:13 final size:14
Alignment explanation
Indices: 68388589--68388630 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
68388579 AATCCAAGTC
* *
68388589 AAATAAAACAATTA
1 AAATAAAATAACTA
68388603 AAAT-AAATAACTA
1 AAATAAAATAACTA
68388616 AAATAAAATAA-TA
1 AAATAAAATAACTA
68388629 AA
1 AA
68388631 TCAAATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAATAACTA
Found at i:68391050 original size:185 final size:185
Alignment explanation
Indices: 68390771--68391111 Score: 533
Period size: 185 Copynumber: 1.8 Consensus size: 185
68390761 GTTCCTGGGG
** *
68390771 AGTTTAATTAACCAACAAAAATAAACTACCACACAAAGCAATTCAAAATAAAATGTTTCTCTAGT
1 AGTTTAATTAACCAACAAAAATAAACTACCACACAAAGCAATTCAAAATAAAACATTTCCCTAGT
* * *
68390836 GCTTTCATAAGGATTCAAATACCAAACCAAAGAGTACAGAGAAGCTTAATCATTGAACCACTAGG
66 ACTTTCATAAGAATTCAAACACCAAACCAAAGAGTACAGAGAAGCTTAATCATTGAACCACTAGG
68390901 CTCATTGTTGTCATTAATTGATTGAATATAAAATAAATATAGGAGGTTACTAGAA
131 CTCATTGTTGTCATTAATTGATTGAATATAAAATAAATATAGGAGGTTACTAGAA
* *
68390956 AGTTTAATTAACCAACAAAAATAAACTACCACACAAAGTAGTTCAAAATAAAACATTTCCCTA-T
1 AGTTTAATTAACCAACAAAAATAAACTACCACACAAAGCAATTCAAAATAAAACATTTCCCTAGT
* * * *
68391020 CACTTAT-ATAAGAATTCGAACACCAAACCAAGGAGTACATAGAAGCTTAATCATTGAACTACTA
66 -ACTT-TCATAAGAATTCAAACACCAAACCAAAGAGTACAGAGAAGCTTAATCATTGAACCACTA
*
68391084 GGCTCATTGTTGTTATTAATTGATTGAA
129 GGCTCATTGTTGTCATTAATTGATTGAA
68391112 ATTAACTTAT
Statistics
Matches: 141, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
184 1 0.01
185 139 0.99
186 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (185 bp):
AGTTTAATTAACCAACAAAAATAAACTACCACACAAAGCAATTCAAAATAAAACATTTCCCTAGT
ACTTTCATAAGAATTCAAACACCAAACCAAAGAGTACAGAGAAGCTTAATCATTGAACCACTAGG
CTCATTGTTGTCATTAATTGATTGAATATAAAATAAATATAGGAGGTTACTAGAA
Found at i:68391685 original size:123 final size:123
Alignment explanation
Indices: 68391484--68391733 Score: 328
Period size: 123 Copynumber: 2.0 Consensus size: 123
68391474 TATATTGTAA
* * **
68391484 CAAAAAGTAATTAATTCAACATTATTTTAAATATTACTTTTTTATTCTTAACTTATATTGGTGAT
1 CAAAAAATAATTAATTCAACATTATTTTAAAGATTACTTTTTTATTCTTAACTTATATTAATGAT
* * * *
68391549 AATATAAGGTATAAATATTTTTAAAA-TTAAATATTTATATTATTTTATTTTTACTTTCT
66 AACATAAGGTATAAAGA-TTGTAAAATTTAAA-ATTTATATTATTTTATTTTCACTTTCT
*
68391608 CAAAAAATAATTAATTCAA-ATTTATTTTATAGATTA-TTTTTTATTCTTAACTTATATTAATGA
1 CAAAAAATAATTAATTCAACA-TTATTTTAAAGATTACTTTTTTATTCTTAACTTATATTAATGA
* *
68391671 TAACACT-AGGTATAAAGATTGTAAAATTTTAAAATTTATATTATTTTGTTTTCACTTTTT
65 TAACA-TAAGGTATAAAGATTGTAAAA-TTTAAAATTTATATTATTTTATTTTCACTTTCT
68391731 CAA
1 CAA
68391734 TCATAGTATT
Statistics
Matches: 111, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
122 7 0.06
123 67 0.60
124 37 0.33
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (123 bp):
CAAAAAATAATTAATTCAACATTATTTTAAAGATTACTTTTTTATTCTTAACTTATATTAATGAT
AACATAAGGTATAAAGATTGTAAAATTTAAAATTTATATTATTTTATTTTCACTTTCT
Found at i:68414346 original size:25 final size:25
Alignment explanation
Indices: 68414302--68414350 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
68414292 TTATAATATG
* * *
68414302 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
68414327 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
68414351 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:68414414 original size:21 final size:20
Alignment explanation
Indices: 68414390--68414466 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 20
68414380 TTGTTATTAT
*
68414390 ACATTATATGACATGATATGC
1 ACATGATATG-CATGATATGC
**
68414411 ACATGATATGTTTTGATATGC
1 ACATGATATG-CATGATATGC
*
68414432 ACATGATATGCCATGATATAC
1 ACATGATATG-CATGATATGC
* *
68414453 TCATTATATGCATG
1 ACATGATATGCATG
68414467 GGTTGGGTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
20 4 0.09
21 42 0.91
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:68414416 original size:11 final size:11
Alignment explanation
Indices: 68414390--68414464 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
68414380 TTGTTATTAT
*
68414390 ACATTATATG-
1 ACATGATATGC
68414400 ACATGATATGC
1 ACATGATATGC
68414411 ACATGATATG-
1 ACATGATATGC
***
68414421 TTTTGATATGC
1 ACATGATATGC
68414432 ACATGATATGC
1 ACATGATATGC
*
68414443 -CATGATATAC
1 ACATGATATGC
* *
68414453 TCATTATATGC
1 ACATGATATGC
68414464 A
1 A
68414465 TGGGTTGGGT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
10 25 0.49
11 26 0.51
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (11 bp):
ACATGATATGC
Found at i:68414446 original size:10 final size:10
Alignment explanation
Indices: 68414395--68414450 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
68414385 ATTATACATT
*
68414395 ATATGACATG
1 ATATGCCATG
68414405 ATATGCACATG
1 ATATGC-CATG
***
68414416 ATATGTTTTG
1 ATATGCCATG
68414426 ATATGCACATG
1 ATATGC-CATG
68414437 ATATGCCATG
1 ATATGCCATG
68414447 ATAT
1 ATAT
68414451 ACTCATTATA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 20 0.54
11 17 0.46
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (10 bp):
ATATGCCATG
Found at i:68414572 original size:25 final size:25
Alignment explanation
Indices: 68414497--68414565 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
68414487 AGGAAGTGCT
* ***
68414497 AAAGGGCTTTGCCCTAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTATTAA
*
68414522 AAAGGGCTTTGTCCCAGTTTATTAA
1 AAAGGGCTTTGCCCCAGTTTATTAA
68414547 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
68414566 ATTTAAAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATTAA
Found at i:68414578 original size:24 final size:25
Alignment explanation
Indices: 68414522--68414594 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
68414512 AGTTTACCGA
*
68414522 AAAG-GGCTTTGTCCCAGTT-TATT
1 AAAGAGGCTTTGCCCCAGTTATATT
*
68414545 AAAAAGGGCTTTGCCCCAGTTAT-TT
1 AAAGA-GGCTTTGCCCCAGTTATATT
**
68414570 AAAGAGGCTAGGCCTCCAGTTATAT
1 AAAGAGGCTTTGCC-CCAGTTATAT
68414595 GGTAAAGCAG
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
23 3 0.08
24 7 0.17
25 28 0.70
26 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
AAAGAGGCTTTGCCCCAGTTATATT
Found at i:68415646 original size:26 final size:26
Alignment explanation
Indices: 68415612--68415664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
68415602 GCAAATATTC
68415612 TTTTATTCTTTCCATACAAGTAATTA
1 TTTTATTCTTTCCATACAAGTAATTA
* * *
68415638 TTTTATTCTTTGCGTATAAGTAATTA
1 TTTTATTCTTTCCATACAAGTAATTA
68415664 T
1 T
68415665 CTTGGTGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (26 bp):
TTTTATTCTTTCCATACAAGTAATTA
Found at i:68424148 original size:44 final size:44
Alignment explanation
Indices: 68424085--68424199 Score: 194
Period size: 44 Copynumber: 2.6 Consensus size: 44
68424075 TGACATAGGG
68424085 TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
1 TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
* * *
68424129 TTCTGACATGTGTTTACGAGTAAGACCATGGCATCGTTATGTGA
1 TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
*
68424173 TTCCGATATGTGTTTACGAGTAAGACC
1 TTCTGATATGTGTTTACGAGTAAGACC
68424200 TTGTCTGGGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (44 bp):
TTCTGATATGTGTTTACGAGTAAGACCATGGCATCGATATATGA
Found at i:68424227 original size:56 final size:56
Alignment explanation
Indices: 68424157--68424283 Score: 193
Period size: 56 Copynumber: 2.3 Consensus size: 56
68424147 AGTAAGACCA
*
68424157 TGGCATCGTTATGTGATTCCGATATGTGTTTACGAGTAAGAC-CTTGTCTGGGACAG
1 TGGCATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTC-TGTCTGGGACAG
* * *
68424213 TGGTATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTCTGTTTGGGATAG
1 TGGCATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTCTGTCTGGGACAG
*
68424269 TGGCATCTATATGTG
1 TGGCATCGATATGTG
68424284 GTTACATGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 63 0.98
57 1 0.02
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.36
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCGATATGTGTTTACGAGTAAGACTCTGTCTGGGACAG
Found at i:68438139 original size:45 final size:45
Alignment explanation
Indices: 68438038--68438240 Score: 217
Period size: 45 Copynumber: 4.6 Consensus size: 45
68438028 TAGCCACCAG
* *
68438038 CCTTATCTCCTTGAAGTTGCAGTGGAGCAG---G-A-A-TACAAG
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTACAAA
* * * * * *
68438077 TCTTACCTCCTTGAAGTTGCAGTTGAGTAGACTGAAGATCACAAA
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTACAAA
68438122 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTACAAA
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTACAAA
*
68438167 CCTTATCTCCCTGAAGTTGCAGTGGAGCACG-TTGAA-ATTACCAAA
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCA-GACTGAAGATTA-CAAA
*
68438212 TCC-TATATCCCTGAAGTTGCAGTTGGAGC
1 -CCTTATCTCCCTGAAGTTGCAG-TGGAGC
68438241 GGATTAAAAT
Statistics
Matches: 140, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
39 26 0.19
42 1 0.01
43 1 0.01
44 5 0.04
45 98 0.70
46 9 0.06
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (45 bp):
CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTACAAA
Found at i:68439786 original size:13 final size:13
Alignment explanation
Indices: 68439770--68439795 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68439760 TTTAATTCAG
68439770 TTTTTATTTTATT
1 TTTTTATTTTATT
68439783 TTTTTATTTTATT
1 TTTTTATTTTATT
68439796 CATTTTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:68448556 original size:16 final size:16
Alignment explanation
Indices: 68448531--68448565 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
68448521 CTCAACGATT
*
68448531 TTATATATAATATAGA
1 TTATAAATAATATAGA
*
68448547 TTATAAATAATATATA
1 TTATAAATAATATAGA
68448563 TTA
1 TTA
68448566 ATGAGTTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
TTATAAATAATATAGA
Found at i:68457256 original size:39 final size:40
Alignment explanation
Indices: 68457169--68457274 Score: 123
Period size: 39 Copynumber: 2.8 Consensus size: 40
68457159 AGACAATTTC
* * *
68457169 TTGGGTTTAAATCTGCTTAAGTCA---TTAGGTGATTTCT
1 TTGGGTTCAAATCTGCCTAAGTCAGCCTTAGGTGAATTCT
*
68457206 TGGGGTTCAAATCTGCCTAAGTCAGCCTTAGGT-AATTCT
1 TTGGGTTCAAATCTGCCTAAGTCAGCCTTAGGTGAATTCT
*
68457245 TTGGGTTCAAAT-TCGCCTAAGTTAGCCTTA
1 TTGGGTTCAAATCT-GCCTAAGTCAGCCTTA
68457275 CACCAACAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
37 21 0.36
38 1 0.02
39 31 0.53
40 6 0.10
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (40 bp):
TTGGGTTCAAATCTGCCTAAGTCAGCCTTAGGTGAATTCT
Found at i:68466775 original size:22 final size:22
Alignment explanation
Indices: 68466723--68466775 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
68466713 GTGGTGAGAA
*
68466723 AAATTATTACTAATAAGAAATT
1 AAATAATTACTAATAAGAAATT
* * *
68466745 AAATTATTACTAATAATATATT
1 AAATAATTACTAATAAGAAATT
*
68466767 CAATAATTA
1 AAATAATTA
68466776 AGTAATTAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATAATTACTAATAAGAAATT
Found at i:68472192 original size:19 final size:18
Alignment explanation
Indices: 68472170--68472208 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
68472160 TTCCTCTCTC
*
68472170 AAAATGAACTAAAAATAAA
1 AAAATAAACTAAAAA-AAA
*
68472189 AAAATAAAGTAAAAAAAA
1 AAAATAAACTAAAAAAAA
68472207 AA
1 AA
68472209 CAAATCCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (18 bp):
AAAATAAACTAAAAAAAA
Found at i:68473730 original size:28 final size:27
Alignment explanation
Indices: 68473696--68473821 Score: 148
Period size: 28 Copynumber: 4.6 Consensus size: 27
68473686 ATTTGATACC
68473696 GAGCACTAAGTGTGCGAAATCGGTCATT
1 GAGCACTAAGTGTGCGAAATCGGT-ATT
* * *
68473724 GAGCACTAAGTGTGC-AAGTTGGTTTT
1 GAGCACTAAGTGTGCGAAATCGGTATT
* * *
68473750 AAGCACTAAGTGTGC-AAATTGGATTTT
1 GAGCACTAAGTGTGCGAAATCGG-TATT
68473777 CGAGCACTAAGTGTGCGAAATCGGTTATT
1 -GAGCACTAAGTGTGCGAAATCGG-TATT
68473806 GAGCACTAAGTGTGCG
1 GAGCACTAAGTGTGCG
68473822 GGAAAATTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 22 0.26
27 10 0.12
28 45 0.52
29 9 0.10
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
GAGCACTAAGTGTGCGAAATCGGTATT
Found at i:68473759 original size:54 final size:57
Alignment explanation
Indices: 68473697--68473821 Score: 161
Period size: 54 Copynumber: 2.3 Consensus size: 57
68473687 TTTGATACCG
* *
68473697 AGCACTAAGTGTGCGAAATCGG-TCATT-GAGCACTAAGTGTGC-AAGTTGGTT-TTA
1 AGCACTAAGTGTGCGAAATCGGAT-ATTCGAGCACTAAGTGTGCGAAATCGGTTATTA
* * *
68473751 AGCACTAAGTGTGC-AAATTGGATTTTCGAGCACTAAGTGTGCGAAATCGGTTATTG
1 AGCACTAAGTGTGCGAAATCGGATATTCGAGCACTAAGTGTGCGAAATCGGTTATTA
68473807 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68473822 GGAAAATTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
53 8 0.13
54 30 0.49
55 7 0.11
56 16 0.26
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAAATCGGATATTCGAGCACTAAGTGTGCGAAATCGGTTATTA
Found at i:68476349 original size:19 final size:20
Alignment explanation
Indices: 68476314--68476362 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
68476304 AATTGAACTT
* *
68476314 GAAAATTGGA-TCTGAGATC
1 GAAAATTAGACTCTGAGATA
68476333 GAAAATTAGACTC-GAGATA
1 GAAAATTAGACTCTGAGATA
*
68476352 AAAAATTAGAC
1 GAAAATTAGAC
68476363 CCAAGAACCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 24 0.92
20 2 0.08
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.22
Consensus pattern (20 bp):
GAAAATTAGACTCTGAGATA
Found at i:68482845 original size:40 final size:41
Alignment explanation
Indices: 68482787--68482965 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 41
68482777 TAACCACTCG
* * * * *
68482787 CAAA-GCCATCGGGCCTTAGCCCGGATA-TGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
* * *
68482826 CAAATGCCTTCGGGACTTAGCCCGGAT-GTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
* *
68482866 CAAATGCCTTCGGGACTTAACCC-GAAATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
* *
68482906 CAAATGCCTTCGGGACTTAACCCGGA-ATTAATCACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
*
68482946 CAAATGTCTTCGGGACTTAA
1 CAAATGCCTTCGGGACTTAA
68482966 ATGCACATAT
Statistics
Matches: 123, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 6 0.05
40 115 0.93
41 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTAGCA
Found at i:68496013 original size:20 final size:20
Alignment explanation
Indices: 68495985--68496024 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68495975 GAGAAAGAAA
*
68495985 GAACCGATGGGGAAGGGAAC
1 GAACCGATGGAGAAGGGAAC
* *
68496005 GAACTGATGGAGAAGTGAAC
1 GAACCGATGGAGAAGGGAAC
68496025 CAGTGGTGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.40, T:0.10
Consensus pattern (20 bp):
GAACCGATGGAGAAGGGAAC
Found at i:68502289 original size:39 final size:39
Alignment explanation
Indices: 68502263--68502420 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
68502253 GTCCAGCACG
68502263 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
* * *
68502302 TAGCCTGCGGACATGAAGTCCGAATATAATTCTCGCATA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
*
68502341 TAGCCTGCGGACCTGAAA-TCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCT-AAAGTCCGGATATAATTCTCGCATA
* *
68502380 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCGTA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
68502419 TA
1 TA
68502421 TATATTCACA
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
38 2 0.02
39 104 0.96
40 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
Found at i:68511135 original size:46 final size:45
Alignment explanation
Indices: 68511079--68511253 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
68511069 TGATTGAGCA
68511079 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * *
68511125 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
68511171 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
68511217 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68511254 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 95 0.87
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Done.