Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 208 of 332
Found at i:69082271 original size:19 final size:20
Alignment explanation
Indices: 69082235--69082273 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
69082225 CCTACCTACC
69082235 CAAATAAACCAAATTACCCA
1 CAAATAAACCAAATTACCCA
*
69082255 CAAATAAACC-CATTACCCA
1 CAAATAAACCAAATTACCCA
69082274 ATAAGCCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (20 bp):
CAAATAAACCAAATTACCCA
Found at i:69084056 original size:230 final size:230
Alignment explanation
Indices: 69083653--69084112 Score: 848
Period size: 230 Copynumber: 2.0 Consensus size: 230
69083643 TCACCAACGT
*
69083653 CCACACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTTTCTGTGGAGGCACGTTTAAGTCGGAT
1 CCACACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTGTGGAGGCACGTTTAAGTCGGAT
*
69083718 CGAAGCTCGACTTGAAACAATGGAAAACCAAGTCTCCATAATCCTTGACATCCTACAAAGCCATT
66 CGAAGCTCGACTTGAAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATT
*
69083783 ACCCCCAACTCCAACAAAATCATTAAAAGACACATATGGAGTATTCTGAACTTTTCTTTTACATG
131 ACCCCCAACTCCAACAAAATCATTAAAAGACACATAGGGAGTATTCTGAACTTTTCTTTTACATG
*
69083848 TTATTAAGAGCTGCTATTTTTATTTCATTTAACAC
196 TTATTAAGAGCTGCTATTTTTATTTCAGTTAACAC
69083883 CCACACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTGTGGAGGCACGTTTAAGTCGGAT
1 CCACACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTGTGGAGGCACGTTTAAGTCGGAT
*
69083948 CGAAGCTCGACTTGGAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATT
66 CGAAGCTCGACTTGAAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATT
* * *
69084013 ACCCCCAACTCCGACAAAGTCATTAAAAGACACATAGGGAGTATTTTGAACTTTTCTTTTACATG
131 ACCCCCAACTCCAACAAAATCATTAAAAGACACATAGGGAGTATTCTGAACTTTTCTTTTACATG
69084078 TTATTAAGAGCTGCTATTTTTATTTCAGTTAACAC
196 TTATTAAGAGCTGCTATTTTTATTTCAGTTAACAC
69084113 TTGCTGGAGG
Statistics
Matches: 222, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
230 222 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (230 bp):
CCACACATCAATGCTAGGGAGCAAGAGAAGCAACCTCTGTCTGTGGAGGCACGTTTAAGTCGGAT
CGAAGCTCGACTTGAAACAATGGAAAACCAAGTCTCCACAATCCTTGACATCCTACAAAGCCATT
ACCCCCAACTCCAACAAAATCATTAAAAGACACATAGGGAGTATTCTGAACTTTTCTTTTACATG
TTATTAAGAGCTGCTATTTTTATTTCAGTTAACAC
Found at i:69091629 original size:34 final size:34
Alignment explanation
Indices: 69091586--69091654 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
69091576 ATTGACTAAG
*
69091586 AAATTAGTCTAAGAGCTAATGTGGTGTTCTTTAA
1 AAATTAGTCTAAGAGCTAATGTCGTGTTCTTTAA
69091620 AAATTAGTCTAAGAGCTAATGTCGTGTTCTTTAA
1 AAATTAGTCTAAGAGCTAATGTCGTGTTCTTTAA
69091654 A
1 A
69091655 TTTGGTGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (34 bp):
AAATTAGTCTAAGAGCTAATGTCGTGTTCTTTAA
Found at i:69095564 original size:42 final size:42
Alignment explanation
Indices: 69095513--69095630 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 42
69095503 CTAAGATTAC
* * *
69095513 GTGTGAGACCATATCTGGGAAATGGCATTGGTATAAGACTTT
1 GTGTAAGACCATATCTGGGAAATGGCATCGATATAAGACTTT
* * *
69095555 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
1 GTGTAAGACCATATCTGGGAAATGGCATCGATATAAGACTTT
* * * *
69095597 TTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 GTGTAAGACCATATCTGGG-AAATGGCATCGATA
69095631 CAAGGTTTAC
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 53 0.83
43 11 0.17
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGAAATGGCATCGATATAAGACTTT
Found at i:69098954 original size:59 final size:59
Alignment explanation
Indices: 69098883--69099001 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
69098873 AAATACTTAG
69098883 AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
1 AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
69098942 AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
1 AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
69099001 A
1 A
69099002 CTCTTCAATA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (59 bp):
AATGACTACATTGGTATAATATAAGTGTGATGTTTTTGTTTCCTCAAGCTTTCAGTTTT
Found at i:69103766 original size:21 final size:21
Alignment explanation
Indices: 69103740--69103794 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
69103730 CTTTAAAATT
*
69103740 AAATTTTAAAAAT-TTTATTTA
1 AAATTTTAAAAATATTT-TTAA
69103761 AAATTTTAAAAAATAATTTTTAA
1 AAATTTT-AAAAAT-ATTTTTAA
69103784 AAATTTTAAAA
1 AAATTTTAAAA
69103795 TATGTATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 7 0.23
22 10 0.33
23 10 0.33
24 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATTTTAAAAATATTTTTAA
Found at i:69103773 original size:22 final size:22
Alignment explanation
Indices: 69103740--69103794 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
69103730 CTTTAAAATT
*
69103740 AAATTTT-AAAAAT-TTTATTTA
1 AAATTTTAAAAAATATTT-TTAA
69103761 AAATTTTAAAAAATAATTTTTAA
1 AAATTTTAAAAAAT-ATTTTTAA
69103784 AAATTTTAAAA
1 AAATTTTAAAA
69103795 TATGTATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 7 0.23
22 6 0.20
23 14 0.47
24 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATTTTAAAAAATATTTTTAA
Found at i:69103804 original size:22 final size:21
Alignment explanation
Indices: 69103740--69103806 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 21
69103730 CTTTAAAATT
*
69103740 AAATTTTAAAAATTTTATTT-A
1 AAATTTTAAAAA-TATATTTAA
*
69103761 AAATTTTAAAAAATAATTTTTAA
1 AAATTTT-AAAAAT-ATATTTAA
*
69103784 AAATTTTAAAATATGTATTTAA
1 AAATTTTAAAA-ATATATTTAA
69103806 A
1 A
69103807 TGTTATAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
21 8 0.21
22 20 0.53
23 10 0.26
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (21 bp):
AAATTTTAAAAATATATTTAA
Found at i:69103897 original size:14 final size:13
Alignment explanation
Indices: 69103872--69103915 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
69103862 TAAATATTTT
69103872 ATAATATTAAAAA
1 ATAATATTAAAAA
*
69103885 ATAATATT-TAAA
1 ATAATATTAAAAA
69103897 AT--T-TTAAAAA
1 ATAATATTAAAAA
69103907 ATAATATTA
1 ATAATATTA
69103916 TAAAGCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
9 2 0.08
10 6 0.24
12 6 0.24
13 11 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATAATATTAAAAA
Found at i:69103903 original size:22 final size:22
Alignment explanation
Indices: 69103864--69103919 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
69103854 ATATATTTTA
*
69103864 AATATTTTATAATATTAAAAAAT
1 AATA-TTTAAAATATTAAAAAAT
*
69103887 AATATTTAAAATTTTAAAAAAT
1 AATATTTAAAATATTAAAAAAT
69103909 AATATTATAAA
1 AATATT-TAAA
69103920 GCATTTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 22 0.73
23 8 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATTTAAAATATTAAAAAAT
Found at i:69103925 original size:25 final size:21
Alignment explanation
Indices: 69103864--69103929 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 21
69103854 ATATATTTTA
*
69103864 AATATTTTATAATATTAAAAAAT
1 AATA-TTTAAAAT-TTAAAAAAT
69103887 AATATTTAAAATTTTAAAAAAT
1 AATATTTAAAA-TTTAAAAAAT
69103909 AATATTATAAAGCATTTAAAA
1 AATATT-TAAA--ATTTAAAA
69103930 TATTGTAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
22 21 0.55
23 9 0.24
24 7 0.18
25 1 0.03
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
AATATTTAAAATTTAAAAAAT
Found at i:69105206 original size:18 final size:18
Alignment explanation
Indices: 69105183--69105218 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
69105173 TGCCATAATT
69105183 TTATAGGGAGAGAAAGAG
1 TTATAGGGAGAGAAAGAG
69105201 TTATAGGGAGAGAAAGAG
1 TTATAGGGAGAGAAAGAG
69105219 CACCAGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.39, T:0.17
Consensus pattern (18 bp):
TTATAGGGAGAGAAAGAG
Found at i:69111941 original size:17 final size:16
Alignment explanation
Indices: 69111919--69111961 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 16
69111909 TAACATCATA
69111919 TTGTTTAATATTATATG
1 TTGTTTAATA-TATATG
69111936 TTGTTTAA-A-ATATG
1 TTGTTTAATATATATG
69111950 TTGTTTTAATAT
1 TTG-TTTAATAT
69111962 CAACATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 8 0.35
15 5 0.22
16 2 0.09
17 8 0.35
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (16 bp):
TTGTTTAATATATATG
Found at i:69112140 original size:26 final size:24
Alignment explanation
Indices: 69112109--69112157 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
69112099 AATAACTTTT
*
69112109 TTTAAAAATATAATAAATTAAATATA
1 TTTAAAAACATAA-AAA-TAAATATA
69112135 TTTAAAAACATAAAAATAAATAT
1 TTTAAAAACATAAAAATAAATAT
69112158 TAAAACAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
TTTAAAAACATAAAAATAAATATA
Found at i:69119180 original size:69 final size:69
Alignment explanation
Indices: 69119069--69119211 Score: 268
Period size: 69 Copynumber: 2.1 Consensus size: 69
69119059 AAAAAAAAGA
69119069 ATTTCATCACGAAATTTTCACGAAATCATGAAATCATATCATAAACCCCAAAATAATTATAAAAT
1 ATTTCATCACGAAATTTTCACGAAATCATGAAATCATATCATAAACCCCAAAATAATTATAAAAT
69119134 AATT
66 AATT
* *
69119138 ATTTCATCATGAAATTTTCATGAAATCATGAAATCATATCATAAACCCCAAAATAATTATAAAAT
1 ATTTCATCACGAAATTTTCACGAAATCATGAAATCATATCATAAACCCCAAAATAATTATAAAAT
69119203 AATT
66 AATT
69119207 ATTTC
1 ATTTC
69119212 TATCTCGGAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (69 bp):
ATTTCATCACGAAATTTTCACGAAATCATGAAATCATATCATAAACCCCAAAATAATTATAAAAT
AATT
Found at i:69121598 original size:16 final size:17
Alignment explanation
Indices: 69121575--69121612 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
69121565 AATAAACAAT
69121575 TAAA-TAAATT-GGAAA
1 TAAATTAAATTGGGAAA
69121590 TAAATTAAATTGGGAAA
1 TAAATTAAATTGGGAAA
69121607 TAAATT
1 TAAATT
69121613 CAGATTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.19
16 6 0.29
17 11 0.52
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (17 bp):
TAAATTAAATTGGGAAA
Found at i:69123251 original size:4 final size:4
Alignment explanation
Indices: 69123242--69123279 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
69123232 TTGAGCCTTA
*
69123242 ATTT ATTT ATTT ATTT -TTC ATTTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT AT
69123280 GTACAATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 2 0.07
4 25 0.83
5 3 0.10
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:69123536 original size:22 final size:22
Alignment explanation
Indices: 69123511--69123559 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
69123501 ACAAAAATCG
*
69123511 ATCAATCATGTATACTTACCAT
1 ATCAATCATGCATACTTACCAT
69123533 ATCAATCATGCATACTTACCAT
1 ATCAATCATGCATACTTACCAT
*
69123555 TTCAA
1 ATCAA
69123560 CCCTCCACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (22 bp):
ATCAATCATGCATACTTACCAT
Found at i:69129434 original size:50 final size:49
Alignment explanation
Indices: 69129266--69129488 Score: 186
Period size: 50 Copynumber: 4.6 Consensus size: 49
69129256 CTAGGGGTAT
* *
69129266 ATGAGAGCTAGTGTAAGAGCATGTCTGGGACATGGCATCGGCACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG-ACCGATAG
* * * * * * ** *
69129316 ATGAAAGCCAGTGGAAGACCATGTTTGAGACATGGCA-TCGACTTA-AT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGACCGATAG
* * *
69129363 ATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGGATTGGTACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG-ACCGATAG
* * * *
69129411 ATGAGAGCTAGTGTAAGAGCATGTCTGGGACATGGCATCGGCCTCGATAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGAC-CGATAG
** *
69129461 ACAAGA-TTCAGTGTAAGACCATGTCTGG
1 ATGAGAGCT-AGTGTAAGACCATGTCTGG
69129489 TTTGTGGCAT
Statistics
Matches: 133, Mismatches: 33, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
45 24 0.18
46 3 0.02
47 7 0.05
48 8 0.06
49 4 0.03
50 87 0.65
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (49 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGACCGATAG
Found at i:69129443 original size:95 final size:95
Alignment explanation
Indices: 69129275--69129450 Score: 262
Period size: 95 Copynumber: 1.9 Consensus size: 95
69129265 TATGAGAGCT
*
69129275 AGTGTAAGAGCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
*
69129340 TTGAGACATGGCATCGACTTAATATGTGTC
66 CTGAGACATGGCATCGACTTAATATGTGTC
* * * * * * *
69129370 AGTGTAAGACCATGTCTGGGACATGGGATTGGTACCGATAGATGAGAGCTAGTGTAAGAGCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
*
69129435 CTGGGACATGGCATCG
66 CTGAGACATGGCATCG
69129451 GCCTCGATAT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 71 1.00
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCAGTGGAAGACCATGT
CTGAGACATGGCATCGACTTAATATGTGTC
Found at i:69129545 original size:48 final size:49
Alignment explanation
Indices: 69129275--69129548 Score: 145
Period size: 50 Copynumber: 5.6 Consensus size: 49
69129265 TATGAGAGCT
* * *
69129275 AGTGTAAGAGCATGTCTGGGACATGGCATCGGCAC-CGATAGATGA-AAG-CC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGAT--AT-ACAAGATC
* * * * ***
69129325 AGTGGAAGACCATGTTTGAGACATGGCATCGA-CT-TA-ATATGTG-TC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGATC
* * * ** *
69129370 AGTGTAAGACCATGTCTGGGACATGGGATTGGTA-C-CGATAGATGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACCTCGATATACAAGATC
* *
69129419 TAGTGTAAGAGCATGTCTGGGACATGGCATCGGCCTCGATATACAAGATTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGA-TC
**** * * * ** *
69129470 AGTGTAAGACCATGTCTGGTTTGTGGCATCGACTTTGATGTGTAAG-TG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGATC
*
69129518 AGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
69129549 GCACTTTAAC
Statistics
Matches: 170, Mismatches: 43, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
44 1 0.01
45 28 0.16
46 2 0.01
47 3 0.02
48 34 0.20
49 4 0.02
50 97 0.57
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATATACAAGATC
Found at i:69134226 original size:29 final size:28
Alignment explanation
Indices: 69134193--69134248 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
69134183 ACAGGGGTTT
69134193 TCACACGGCCGAACACACGCCCATGTCCC
1 TCACACGGCC-AACACACGCCCATGTCCC
* * * *
69134222 TCACATGGCCTAGACACGCCCGTGTCC
1 TCACACGGCCAACACACGCCCATGTCC
69134249 AAAAACCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.21, C:0.45, G:0.20, T:0.14
Consensus pattern (28 bp):
TCACACGGCCAACACACGCCCATGTCCC
Found at i:69138938 original size:50 final size:49
Alignment explanation
Indices: 69138875--69139063 Score: 211
Period size: 50 Copynumber: 3.8 Consensus size: 49
69138865 TGATGCTAGG
*
69138875 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACC
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CC
**
69138925 GATAGATGAGAGCTAGTGTAAGTGCATGTCTGGGACATGGCATCGGCCTC
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-C
* * * * * * **
69138975 GACATACGAGAGTTAGTGTAAGACCATGTCTGGGATATGGCATCGACTTT
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CC
** *
69139025 GAT-G-TGTCAGCTAGTGTAAGACCATGTCAGGGACATGGC
1 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
69139064 GTTGGCGCCT
Statistics
Matches: 116, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
48 29 0.25
49 1 0.01
50 86 0.74
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (49 bp):
GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCC
Found at i:69147913 original size:20 final size:20
Alignment explanation
Indices: 69147864--69147913 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
69147854 GCACACGCCT
*
69147864 GTGTGGCCTCAGACATGCCC
1 GTGTGGCCTGAGACATGCCC
*
69147884 GTGTGGCCTGGGACATGCCC
1 GTGTGGCCTGAGACATGCCC
69147904 GTGTGGCCTG
1 GTGTGGCCTG
69147914 CCCGTGGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.10, C:0.30, G:0.38, T:0.22
Consensus pattern (20 bp):
GTGTGGCCTGAGACATGCCC
Found at i:69148899 original size:52 final size:52
Alignment explanation
Indices: 69148767--69148933 Score: 185
Period size: 52 Copynumber: 3.2 Consensus size: 52
69148757 TCTTACACGG
* * *
69148767 ATCACATCACACACTGATGCCATATCTCAGATATGGTCTTATAC-AGAACCACATT
1 ATCACATCACAC-C-GATGCCATAGCCCAGATATGGTCTTATACGGGAA-CACA-T
**
69148822 ATCATGTCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
1 ATCACATCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
** * * *
69148874 ATCACATTGCACCGATGCCATAGCCCA-ACTATGGTCATAAACGGGCACACAT
1 ATCACATCACACCGATGCCATAGCCCAGA-TATGGTCTTATACGGGAACACAT
69148926 ATCACATC
1 ATCACATC
69148934 TTTTCCGTTG
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
51 1 0.01
52 51 0.53
53 31 0.32
54 4 0.04
55 10 0.10
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (52 bp):
ATCACATCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
Found at i:69153375 original size:21 final size:21
Alignment explanation
Indices: 69153339--69153389 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
69153329 TTGAGTTTTG
* *
69153339 GGGTTTATAATTTTAAGGTTTA
1 GGGTTT-TAATATTAAGGTTCA
*
69153361 GGGTTTTAATATTAATGTTCA
1 GGGTTTTAATATTAAGGTTCA
*
69153382 TGGTTTTA
1 GGGTTTTA
69153390 GGGGTTAGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.25, C:0.02, G:0.22, T:0.51
Consensus pattern (21 bp):
GGGTTTTAATATTAAGGTTCA
Found at i:69153841 original size:14 final size:14
Alignment explanation
Indices: 69153822--69153859 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
69153812 TATATATGAT
69153822 TTTGGGGTTTAAAG
1 TTTGGGGTTTAAAG
**
69153836 TTTGGGGTTTAGGG
1 TTTGGGGTTTAAAG
69153850 TTTGGGGTTT
1 TTTGGGGTTT
69153860 GGTGTTCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.11, C:0.00, G:0.42, T:0.47
Consensus pattern (14 bp):
TTTGGGGTTTAAAG
Found at i:69154823 original size:37 final size:37
Alignment explanation
Indices: 69154782--69154869 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
69154772 TTCCCTTAAA
* *
69154782 TCTCCCCGTGCATTGCAACCCATCTCCTCCGTCACCT
1 TCTCCCCGTGCATCGCAACCCATCTCCTCCATCACCT
*
69154819 TCTCCCCGTGCATCGCAACCCATCTCCTCCATCTCCT
1 TCTCCCCGTGCATCGCAACCCATCTCCTCCATCACCT
* *
69154856 TCGCCTCGTGCATC
1 TCTCCCCGTGCATC
69154870 TGCTGCATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.12, C:0.49, G:0.11, T:0.27
Consensus pattern (37 bp):
TCTCCCCGTGCATCGCAACCCATCTCCTCCATCACCT
Found at i:69156462 original size:14 final size:15
Alignment explanation
Indices: 69156440--69156476 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
69156430 TTAGTTTAAT
69156440 AATTATATGAAGTAA
1 AATTATATGAAGTAA
69156455 AA-TATATGAAGTAA
1 AATTATATGAAGTAA
69156469 AATTATAT
1 AATTATAT
69156477 TATATACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (15 bp):
AATTATATGAAGTAA
Found at i:69157952 original size:15 final size:17
Alignment explanation
Indices: 69157918--69157951 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
69157908 GATGTTTCTA
69157918 ATTCAAAAGTAATATAT
1 ATTCAAAAGTAATATAT
69157935 ATTCAAAAGTAATATAT
1 ATTCAAAAGTAATATAT
69157952 TTTTTTCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (17 bp):
ATTCAAAAGTAATATAT
Found at i:69157990 original size:9 final size:9
Alignment explanation
Indices: 69157976--69158153 Score: 70
Period size: 9 Copynumber: 21.1 Consensus size: 9
69157966 CCAGCAACTC
69157976 ACATAATTT
1 ACATAATTT
69157985 ACATAA--T
1 ACATAATTT
*
69157992 ACATAACTT
1 ACATAATTT
69158001 ACATAATTT
1 ACATAATTT
*
69158010 --A-AAGTT
1 ACATAATTT
69158016 -CA-AATTT
1 ACATAATTT
*
69158023 -CATAACTT
1 ACATAATTT
69158031 ACATAA--T
1 ACATAATTT
*
69158038 ACATAACTT
1 ACATAATTT
69158047 ACATAATTT
1 ACATAATTT
69158056 AAAGACCA-AATTT
1 ----A-CATAATTT
*
69158069 -CATAAATT
1 ACATAATTT
69158077 ACATAATTT
1 ACATAATTT
*
69158086 ACATAACTT
1 ACATAATTT
69158095 ACATAATAATT
1 ACATAAT--TT
* *
69158106 -TA-AAGTT
1 ACATAATTT
69158113 -CA-AATTT
1 ACATAATTT
*
69158120 -CATAACTT
1 ACATAATTT
69158128 ACATAA--T
1 ACATAATTT
*
69158135 ACATAACTT
1 ACATAATTT
69158144 ACATAATTT
1 ACATAATTT
69158153 A
1 A
69158154 AAGATCAAAA
Statistics
Matches: 134, Mismatches: 15, Indels: 40
0.71 0.08 0.21
Matches are distributed among these distances:
6 4 0.03
7 40 0.30
8 12 0.09
9 67 0.50
10 1 0.01
11 2 0.01
13 6 0.04
14 2 0.01
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.37
Consensus pattern (9 bp):
ACATAATTT
Found at i:69157997 original size:16 final size:16
Alignment explanation
Indices: 69157976--69158211 Score: 136
Period size: 16 Copynumber: 14.9 Consensus size: 16
69157966 CCAGCAACTC
*
69157976 ACATAATTTACATAAT
1 ACATAACTTACATAAT
69157992 ACATAACTTACATAAT
1 ACATAACTTACATAAT
** *
69158008 TTA-AAGTT-CA-AATT
1 ACATAACTTACATAA-T
*
69158022 TCATAACTTACATAAT
1 ACATAACTTACATAAT
69158038 ACATAACTTACATAAT
1 ACATAACTTACATAAT
* **
69158054 --TTAA-AGACCA-AATT
1 ACATAACTTA-CATAA-T
* *
69158068 TCATAAATTACATAATTT
1 ACATAACTTACATAA--T
69158086 ACATAACTTACATAAT
1 ACATAACTTACATAAT
*
69158102 A-ATTTAAAGTT-CA-AATT
1 ACA--T-AACTTACATAA-T
*
69158119 TCATAACTTACATAAT
1 ACATAACTTACATAAT
69158135 ACATAACTTACATAAT
1 ACATAACTTACATAAT
** ** *
69158151 TTA-AAGAT-CAAAAT
1 ACATAACTTACATAAT
*
69158165 TCATAACTTACATAAT
1 ACATAACTTACATAAT
69158181 ACATAACTTACATAAT
1 ACATAACTTACATAAT
*
69158197 ACATGACTTACATAA
1 ACATAACTTACATAA
69158212 CTTAATTATA
Statistics
Matches: 170, Mismatches: 30, Indels: 40
0.71 0.12 0.17
Matches are distributed among these distances:
13 5 0.03
14 18 0.11
15 19 0.11
16 97 0.57
17 11 0.06
18 20 0.12
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (16 bp):
ACATAACTTACATAAT
Found at i:69158033 original size:46 final size:46
Alignment explanation
Indices: 69157977--69158196 Score: 341
Period size: 46 Copynumber: 4.7 Consensus size: 46
69157967 CAGCAACTCA
* *
69157977 CATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
*
69158023 CATAACTTACATAATACATAACTTACATAATTTAAAGACCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* *
69158069 CATAAATTACATAATTTACATAACTTACATAATAATTTAAAGTTCAAATTT
1 CATAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTT
*
69158120 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
69158166 CATAACTTACATAATACATAACTTACATAAT
1 CATAACTTACATAATACATAACTTACATAAT
69158197 ACATGACTTA
Statistics
Matches: 160, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
46 105 0.66
48 12 0.08
49 12 0.08
51 31 0.19
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (46 bp):
CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
Found at i:69158116 original size:97 final size:95
Alignment explanation
Indices: 69157977--69158197 Score: 367
Period size: 97 Copynumber: 2.3 Consensus size: 95
69157967 CAGCAACTCA
*
69157977 CATAATTTACATAATACATAACTTAC---ATAATTTAAAGTTCAAATTTCATAACTTACATAATA
1 CATAAATTACATAATACATAACTTACATAATAATTTAAAGTTCAAATTTCATAACTTACATAATA
*
69158039 CATAACTTACATAATTTAAAGACCAAATTT
66 CATAACTTACATAATTTAAAGACCAAAATT
69158069 CATAAATTACATAATTTACATAACTTACATAATAATTTAAAGTTCAAATTTCATAACTTACATAA
1 CATAAATTACATAA--TACATAACTTACATAATAATTTAAAGTTCAAATTTCATAACTTACATAA
*
69158134 TACATAACTTACATAATTTAAAGATCAAAATT
64 TACATAACTTACATAATTTAAAGACCAAAATT
*
69158166 CATAACTTACATAATACATAACTTACATAATA
1 CATAAATTACATAATACATAACTTACATAATA
69158198 CATGACTTAC
Statistics
Matches: 120, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
92 13 0.11
94 12 0.10
95 18 0.15
97 77 0.64
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (95 bp):
CATAAATTACATAATACATAACTTACATAATAATTTAAAGTTCAAATTTCATAACTTACATAATA
CATAACTTACATAATTTAAAGACCAAAATT
Found at i:69163735 original size:21 final size:21
Alignment explanation
Indices: 69163710--69163752 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
69163700 AGGCAGCAAT
* *
69163710 AGGGAGGTAGCGGCAGTAGCG
1 AGGGAGGTAGAGGCAGCAGCG
69163731 AGGGAGGTAGAGGCAGCAGCG
1 AGGGAGGTAGAGGCAGCAGCG
69163752 A
1 A
69163753 TGGCAGCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.14, G:0.51, T:0.07
Consensus pattern (21 bp):
AGGGAGGTAGAGGCAGCAGCG
Found at i:69164037 original size:31 final size:31
Alignment explanation
Indices: 69163975--69164060 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
69163965 TTAGATTTAA
* * *
69163975 TGTTTTTGATTGTATTTATTATGCTACATTTGT
1 TGTTTTTGGTTGGATTTA--ATGCTACATTTGC
* *
69164008 TGTTTTTGGTTGGATTTCATGCTATATTTGC
1 TGTTTTTGGTTGGATTTAATGCTACATTTGC
69164039 TGTTTTTGGTTGGATTTAATGC
1 TGTTTTTGGTTGGATTTAATGC
69164061 AAGAAGGGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 32 0.68
33 15 0.32
ACGTcount: A:0.15, C:0.07, G:0.21, T:0.57
Consensus pattern (31 bp):
TGTTTTTGGTTGGATTTAATGCTACATTTGC
Found at i:69168519 original size:26 final size:26
Alignment explanation
Indices: 69168490--69168571 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
69168480 TGATACAAAT
69168490 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69168516 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69168542 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69168568 TGAT
1 TGAT
69168572 GGGAATTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:69175438 original size:25 final size:26
Alignment explanation
Indices: 69175397--69175477 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
69175387 TGATACAAAT
69175397 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
69175423 TGATAAT-GGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69175448 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69175474 TGAT
1 TGAT
69175478 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 24 0.46
26 28 0.54
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:69177781 original size:32 final size:32
Alignment explanation
Indices: 69177745--69177809 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
69177735 AAACAACAAT
*
69177745 TGATTTCAAAATAATACGACAACAAGCAAAGC
1 TGATTTCAAAATAATACGACAACAAGAAAAGC
69177777 TGATTTCAAAATAATACGACAACAAGAAAAGC
1 TGATTTCAAAATAATACGACAACAAGAAAAGC
69177809 T
1 T
69177810 TCTGCAATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (32 bp):
TGATTTCAAAATAATACGACAACAAGAAAAGC
Found at i:69178436 original size:46 final size:46
Alignment explanation
Indices: 69178361--69178727 Score: 511
Period size: 46 Copynumber: 8.0 Consensus size: 46
69178351 TTATCTTCGA
* * * * * *
69178361 CATGATGCCATAGTATCTTTCAACTATGGTTTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** ***
69178407 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
*** *
69178454 CATGTTGCCATGGTATCTTTCAACCATGGTCTTTTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69178500 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69178546 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
69178592 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
69178638 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
69178684 TAGGTTGCCATGGTATCTTTCAGCCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
69178728 TTCAGAGAGC
Statistics
Matches: 297, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 259 0.87
47 38 0.13
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:69178587 original size:21 final size:21
Alignment explanation
Indices: 69178517--69178588 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
69178507 CCATGGTATC
69178517 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* * * *
69178538 TTTCATATCATGTTGCCATAGTATC-
1 TTTCA-ACCATG--GTCTTA-CA-CA
69178563 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
69178584 TTTCA
1 TTTCA
69178589 TATCATGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 11 0.30
22 9 0.24
24 9 0.24
25 6 0.16
26 1 0.03
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.39
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:69179924 original size:29 final size:29
Alignment explanation
Indices: 69179882--69179940 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
69179872 ATTTTCCAAA
*
69179882 GTCAGAACAGGGGAACCTGAATTCATTCT
1 GTCAGAACAGGGGAACCCGAATTCATTCT
69179911 GTCAGAACAGGGGAACCCGAATTCATTCT
1 GTCAGAACAGGGGAACCCGAATTCATTCT
69179940 G
1 G
69179941 ACCTTGTCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (29 bp):
GTCAGAACAGGGGAACCCGAATTCATTCT
Found at i:69181515 original size:18 final size:19
Alignment explanation
Indices: 69181466--69181515 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
69181456 TATAATATAA
69181466 TTATTTAATTAATAAATATC
1 TTATTTAA-TAATAAATATC
69181486 TT-TTATAAAATAATAAATAT-
1 TTATT-T--AATAATAAATATC
69181506 TTATTTAATA
1 TTATTTAATA
69181516 TCTAATACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
18 4 0.15
19 2 0.08
20 6 0.23
21 12 0.46
22 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TTATTTAATAATAAATATC
Found at i:69182092 original size:52 final size:52
Alignment explanation
Indices: 69181969--69182125 Score: 172
Period size: 52 Copynumber: 3.0 Consensus size: 52
69181959 TCGAGTTATT
* * **
69181969 ACACCGATGCCATATCCCAGATATGGTCTTATAC-GGAATCACATTATCATGTC
1 ACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAA-CACA-TATCACATC
* * *
69182022 ACACCAAAGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACATT
1 ACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACATC
* * * * **
69182074 GCACTGATGCCATAGCCCAGCTATGGTCTTAAATGGGCGCACATATCACATC
1 ACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACATC
69182126 TTTTCCATTG
Statistics
Matches: 87, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
52 49 0.56
53 34 0.39
54 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (52 bp):
ACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAACACATATCACATC
Found at i:69183847 original size:26 final size:26
Alignment explanation
Indices: 69183807--69183916 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
69183797 TGATACAAAT
*
69183807 TGATAATAGGCTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
69183833 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
69183859 TGATAATGGGTTAGATAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
69183885 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
69183911 TGATAA
1 TGATAA
69183917 GAATTTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:69192237 original size:2 final size:2
Alignment explanation
Indices: 69192230--69192258 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
69192220 TCTTCAATCT
69192230 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
69192259 TTTATAATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:69195973 original size:40 final size:40
Alignment explanation
Indices: 69195910--69196130 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
69195900 ATTCGGATTG
*
69195910 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
69195949 ATATCCGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
69195989 ATAACCGGGCCAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
69196029 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
69196069 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
69196109 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
69196131 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 29 0.18
40 134 0.82
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:69197998 original size:43 final size:43
Alignment explanation
Indices: 69197960--69198070 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
69197950 TCCTAGCTAT
* *
69197960 AGTCTTACATGTTATCACATATCGATGCCTCTGTCCTAGACAG
1 AGTCTTACACGTAATCACATATCGATGCCTCTGTCCTAGACAG
* * ** *
69198003 GGTCTTACACGTAATCTCATATCGATGCCGATGTCCCAGACATG
1 AGTCTTACACGTAATCACATATCGATGCCTCTGTCCTAGACA-G
* *
69198047 -GTCTTACACGAAATCACACATCGA
1 AGTCTTACACGTAATCACATATCGA
69198071 AAGTCCTAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 56 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
AGTCTTACACGTAATCACATATCGATGCCTCTGTCCTAGACAG
Found at i:69198724 original size:25 final size:26
Alignment explanation
Indices: 69198680--69198731 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
69198670 TCATTTAAGT
69198680 GGTTAATTCGAAAAAAGGACTTAATC
1 GGTTAATTCGAAAAAAGGACTTAATC
69198706 GGTTAATTC-AAAAAAGGACTTAATC
1 GGTTAATTCGAAAAAAGGACTTAATC
69198731 G
1 G
69198732 CGTAAAATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (26 bp):
GGTTAATTCGAAAAAAGGACTTAATC
Found at i:69198744 original size:27 final size:25
Alignment explanation
Indices: 69198690--69198745 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
69198680 GGTTAATTCG
* *
69198690 AAAAAAGGACTTAATCGGTTAATTC
1 AAAAAAGGACTTAATCGGTAAATGC
69198715 AAAAAAGGACTTAATCGCGTAAAATGC
1 AAAAAAGGACTTAATCG-GT-AAATGC
69198742 AAAA
1 AAAA
69198746 GTAGCATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 17 0.63
26 2 0.07
27 8 0.30
ACGTcount: A:0.50, C:0.12, G:0.16, T:0.21
Consensus pattern (25 bp):
AAAAAAGGACTTAATCGGTAAATGC
Found at i:69203703 original size:19 final size:19
Alignment explanation
Indices: 69203679--69203716 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
69203669 GACTTCGTTT
69203679 TCCTGCATCAAAACACAGC
1 TCCTGCATCAAAACACAGC
69203698 TCCTGCATCAAAACACAGC
1 TCCTGCATCAAAACACAGC
69203717 CCAGACCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.37, G:0.11, T:0.16
Consensus pattern (19 bp):
TCCTGCATCAAAACACAGC
Found at i:69204882 original size:24 final size:24
Alignment explanation
Indices: 69204850--69204909 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
69204840 AAAATTTACA
* *
69204850 ACAATAATATAAATA-ATGATATGT
1 ACAAAAATATAAATATA-CATATGT
*
69204874 ACAAAAATATATATATACATATGT
1 ACAAAAATATAAATATACATATGT
69204898 ACATAAAATATA
1 ACA-AAAATATA
69204910 CACTAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 22 0.71
25 9 0.29
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.32
Consensus pattern (24 bp):
ACAAAAATATAAATATACATATGT
Found at i:69205618 original size:24 final size:24
Alignment explanation
Indices: 69205591--69205655 Score: 107
Period size: 25 Copynumber: 2.8 Consensus size: 24
69205581 TTTTTGGGGG
69205591 GGGTTAGGTTTTTCTTTTTTTTTT
1 GGGTTAGGTTTTTCTTTTTTTTTT
69205615 GGGTTAGGTTTTTTCTTTTTTTTTT
1 GGGTTAGG-TTTTTCTTTTTTTTTT
69205640 -GGTTAGGTTTTT-TTTT
1 GGGTTAGGTTTTTCTTTT
69205656 GGGAGGGCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
22 4 0.10
23 5 0.12
24 15 0.38
25 16 0.40
ACGTcount: A:0.05, C:0.03, G:0.22, T:0.71
Consensus pattern (24 bp):
GGGTTAGGTTTTTCTTTTTTTTTT
Found at i:69205653 original size:25 final size:25
Alignment explanation
Indices: 69205591--69205652 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 25
69205581 TTTTTGGGGG
69205591 GGGTTAGG-TTTTTCTTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTTT
69205615 GGGTTAGGTTTTTTCTTTTTTTTTT
1 GGGTTAGGTTTTTTCTTTTTTTTTT
69205640 -GGTTAGGTTTTTT
1 GGGTTAGGTTTTTT
69205653 TTTGGGAGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
24 21 0.57
25 16 0.43
ACGTcount: A:0.05, C:0.03, G:0.23, T:0.69
Consensus pattern (25 bp):
GGGTTAGGTTTTTTCTTTTTTTTTT
Found at i:69206416 original size:88 final size:83
Alignment explanation
Indices: 69206322--69207297 Score: 381
Period size: 88 Copynumber: 11.8 Consensus size: 83
69206312 AAAATAGAAA
* *
69206322 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
69206387 AAACTTAACTTGAAAAGCAGATT
65 AAA---AAC-TGAAAAACAGATT
* * ** *
69206410 TTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 TTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
69206473 GAAAAACAGAAATTAAAAGA--
64 GAAAAACTGAAA--AACAGATT
* * * ** *** *
69206493 CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
1 TTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TT
**
69206556 TTTTGAAAAA---AAAAACAGAAA
60 TTTTGAAAAACTGAAAAACAGATT
* * *
69206577 TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
69206641 AAAATAGAATTTGAAAAACAGATT
65 --AA-A-AA-CTGAAAAACAGATT
* * * * *
69206665 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTT
1 TTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
*
69206730 GAAAAA-T---ATA-A-ATT
64 GAAAAACTGAAAAACAGATT
*** *** * *
69206744 GAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* **
69206808 -------TGAAAGACAGAAA
64 GAAAAACTGAAAAACAGATT
* * * *
69206821 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGAAATATAAGTTGATTTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
69206886 -AAAAC----AGA-A-A--
65 AAAAACTGAAAAACAGATT
* * ** ** *
69206896 TTGAAAATACCTC-AACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTG
1 TTGAAAATACCTCGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* ** **
69206958 AAAGCAGAAATTGAAAAATGGAAA
65 --A--A-AAACTGAAAAACAGATT
*** * **
69206982 TTGAAAATACCTCGGTGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* ** *
69207046 AAAAA-T-ATAAATTGAAGTAA
65 AAAAACTGAAAAACAG-A-T-T
*** *** * *
69207066 AAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* **
69207130 TGAAAGACAGAAATTGAAAAACAGAAA
63 T----GA-A-AAACTGAAAAACAGATT
** * **
69207157 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* **
69207221 ------TGAAAGACAGAAA
65 AAAAACTGAAAAACAGATT
* * *
69207234 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTT
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
69207298 TTTGAAAGGC
Statistics
Matches: 698, Mismatches: 115, Indels: 161
0.72 0.12 0.17
Matches are distributed among these distances:
72 7 0.01
73 32 0.05
75 14 0.02
76 3 0.00
77 123 0.18
78 10 0.01
79 50 0.07
80 9 0.01
81 8 0.01
82 18 0.03
83 44 0.06
84 97 0.14
85 13 0.02
86 21 0.03
87 24 0.03
88 147 0.21
89 2 0.00
90 15 0.02
91 51 0.07
92 3 0.00
93 2 0.00
94 5 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (83 bp):
TTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
AAAACTGAAAAACAGATT
Found at i:69206515 original size:30 final size:30
Alignment explanation
Indices: 69206479--69206540 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
69206469 TTTTGAAAAA
69206479 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
69206509 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
69206539 CA
1 CA
69206541 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:69206859 original size:77 final size:76
Alignment explanation
Indices: 69206691--69206974 Score: 312
Period size: 79 Copynumber: 3.8 Consensus size: 76
69206681 ATGTGACCCG
* * * * *
69206691 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTG--AAAATACCT
* *
69206756 CAGTGTGTGATCTGA
63 CAG-GCGTGATCTCA
*
69206771 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAAAATACCTCA
*
69206835 GCGCGTGAGC-CA
65 G-GCGTGATCTCA
* *
69206847 AGGCTCAACTCACCTCTCGAAATATAAGTTGATTTTTTGAAA-ACAGAAATTGAAAATACCTCA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAG
* **
69206910 ACGTG-TCTTG
66 GCGTGATCTCA
** *
69206920 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAG-CAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAA
69206975 ATGGAAATTG
Statistics
Matches: 179, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
72 22 0.12
73 32 0.18
75 20 0.11
76 12 0.07
77 45 0.25
79 47 0.26
80 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAG
GCGTGATCTCA
Found at i:69207148 original size:14 final size:14
Alignment explanation
Indices: 69207129--69207163 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
69207119 GTTGATTTTT
*
69207129 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
69207143 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
69207157 TTGAAAA
1 TTGAAAA
69207164 TACCTCGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:69207190 original size:91 final size:89
Alignment explanation
Indices: 69206886--69207240 Score: 465
Period size: 91 Copynumber: 4.0 Consensus size: 89
69206876 TGATTTTTTG
* * **
69206886 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
69206949 TGAATTTTGAAAG-CAGAAATTGA
66 TGATTTTTGAAAGACAGAAATTGA
** * *
69206972 AAAATGGAAATTGAAAATACCTCGGTGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
69207037 TGATTTTTGAAAAATATAAATTGA
66 TGATTTTTGAAAGACAGAAATTGA
** * *
69207061 AGTA-A-AAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
69207121 TGATTTTTTTGAAAGACAGAAATTGA
66 TGA--TTTTTGAAAGACAGAAATTGA
*
69207147 AAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
69207212 TGATTTTTTTGAAAGACAGAAATTGA
66 TGA--TTTTTGAAAGACAGAAATTGA
69207238 AAA
1 AAA
69207241 TAGCTCAGCG
Statistics
Matches: 234, Mismatches: 25, Indels: 15
0.85 0.09 0.05
Matches are distributed among these distances:
84 53 0.23
86 45 0.19
87 5 0.02
88 43 0.18
89 10 0.04
91 78 0.33
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (89 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAGACAGAAATTGA
Found at i:69207270 original size:77 final size:78
Alignment explanation
Indices: 69207143--69207320 Score: 250
Period size: 77 Copynumber: 2.3 Consensus size: 78
69207133 AAGACAGAAA
* * * * **
69207143 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
69207208 GAGTTGA-TTTTT
66 GAGTCGATTTTTT
*
69207220 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
69207285 GAGTCGATTTTTTT
66 GAGTCGA-TTTTTT
* *
69207299 TTGAAAGGCAAAAATTGAAAAT
1 TTGAAAGACAGAAATTGAAAAT
69207321 TGAAAAATGA
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
77 64 0.72
79 25 0.28
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (78 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTT
Found at i:69207321 original size:7 final size:7
Alignment explanation
Indices: 69207309--69207341 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
69207299 TTGAAAGGCA
69207309 AAAATTG
1 AAAATTG
69207316 AAAATTG
1 AAAATTG
*
69207323 AAAAATG
1 AAAATTG
69207330 AAAATTG
1 AAAATTG
69207337 AAAAT
1 AAAAT
69207342 ACCTCGGCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (7 bp):
AAAATTG
Found at i:69207485 original size:76 final size:75
Alignment explanation
Indices: 69207331--69207472 Score: 180
Period size: 74 Copynumber: 1.9 Consensus size: 75
69207321 TGAAAAATGA
* * **
69207331 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACATGCCGCTCGTAATACGAGTTGACTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACATACCGCTCACAATACGAGTTGACTTT
69207396 TTTGACAACAG
65 TTTGACAACAG
* * * *
69207407 AAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAAC-TCACCTCTCACAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACAT-ACCGCTCACAATACGAGTTGACTTT
69207470 TTT
65 TTT
69207473 TGAAAGGCAG
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
73 1 0.02
74 35 0.61
76 21 0.37
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (75 bp):
AAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACATACCGCTCACAATACGAGTTGACTTTT
TTGACAACAG
Found at i:69207491 original size:76 final size:75
Alignment explanation
Indices: 69207335--69207492 Score: 169
Period size: 74 Copynumber: 2.1 Consensus size: 75
69207325 AAATGAAAAT
* * **
69207335 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACATGCCGCTCGTAATACGAGTTGACTTTTTTG
1 TGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACATACCGCTCACAATACGAGTTGACTTTTTTG
*
69207400 ACAACAGAAAT
65 ACAACAGAAAC
* * * *
69207411 TGAAATTACCTCAGCGTGT-CCTGAGGCTCAAC-TCACCTCTCACAATATGAGTTGATTTTTTTT
1 TGAAAATACCTCAGCGTGTACCTGAGGCTCAACAT-ACCGCTCACAATACGAGTTGA-CTTTTTT
69207474 GA-AAGGCAGAAAC
64 GACAA--CAGAAAC
69207487 TGAAAA
1 TGAAAA
69207493 ACGGAAATTG
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
73 1 0.01
74 31 0.46
75 8 0.12
76 28 0.41
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (75 bp):
TGAAAATACCTCAGCGTGTACCTGAGGCTCAACATACCGCTCACAATACGAGTTGACTTTTTTGA
CAACAGAAAC
Found at i:69207574 original size:90 final size:89
Alignment explanation
Indices: 69207406--69207581 Score: 230
Period size: 90 Copynumber: 2.0 Consensus size: 89
69207396 TTTGACAACA
* * *
69207406 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCACAATACGAGTTGATTTTT
69207471 TTTGAAAGGCAGAAACTGAAAAACG
66 TTTGAAA-GCAGAAACTGAAAAACG
* * * *
69207496 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTTAACTCGCCACTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCACAATACGAGTTGATTT
*
69207560 TTTTTGACAA-CAGAAATTGAAA
64 TTTTTGA-AAGCAGAAACTGAAA
69207582 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
90 33 0.44
91 9 0.12
92 33 0.44
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCACAATACGAGTTGATTTTT
TTTGAAAGCAGAAACTGAAAAACG
Found at i:69207638 original size:76 final size:75
Alignment explanation
Indices: 69207496--69207822 Score: 230
Period size: 74 Copynumber: 4.1 Consensus size: 75
69207486 CTGAAAAACG
* * * * * *
69207496 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTTAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCACAATACGAGTTGATTT
69207561 TTTTGACA-ACA
64 TTTTGACAGACA
*
69207572 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATACGAGTTGATTTTT
* * *
69207637 TTTAAAGGCA
66 TTGACAGACA
** * * * * * * * *
69207647 GAAATTGAAAAACGGAAATTGAAAAT-A-CCTCGGCGTGTGACTTGAGGCTCAACTCGTCACTCG
1 GAAATT--------GAAATT--ACCTCAGCGT-GTCCTGAGGC-TCA-ACTCACCTC-TCAC---
69207710 CAATACGAGTTGATTTTTTTGACA-ACA
49 -AATACGAGTTGATTTTTTTGACAGACA
* *
69207737 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATACGAGTTGA-TTTT
*
69207802 TTTGAAAGACA
65 TTTGACAGACA
69207813 GAAATTGAAA
1 GAAATTGAAA
69207823 AACGAAAATT
Statistics
Matches: 191, Mismatches: 37, Indels: 46
0.70 0.14 0.17
Matches are distributed among these distances:
74 51 0.27
75 18 0.09
76 35 0.18
78 3 0.02
79 7 0.04
80 4 0.02
81 7 0.04
82 8 0.04
83 8 0.04
84 7 0.04
85 4 0.02
86 7 0.04
87 4 0.02
90 8 0.04
91 20 0.10
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATACGAGTTGATTTTT
TTGACAGACA
Found at i:69207723 original size:165 final size:166
Alignment explanation
Indices: 69206807--69208068 Score: 1381
Period size: 166 Copynumber: 7.5 Consensus size: 166
69206797 GTTGATTTTT
* * * * * * * *
69206807 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGAAATA
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCTCTCGCAATA
** * * **
69206871 TAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
65 CGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
*
69206935 CTCGCAATATGAGTTGA---ATTTTGAAA-GCAGAAA
130 CTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
* * * * *
69206968 TTGAAAAATGGAAATTGAAAATACCTCGGTGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
* * * * *
69207033 GAGTTGA--TTTTTGAAAAATATAAATTGAAGTAAAAAAAAATACCTCAGTGTGTGATCTGAAGC
66 GAGTTGATTTTTTTG-AAAACAGAAATT---G------AAAATACCTCAGCGTGT--CCTGAGGC
*
69207096 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAA
119 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
* * * *
69207143 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
* * *
69207208 GAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCA
66 GAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCA
*
69207272 CCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAAAAATTGAAAA
127 CCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAGGC----A--G-AAA
* * * *
69207320 TTGAAAAATGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACAT-GCCGCTCGTAATA
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAAC-TCGCCTCTCGCAATA
* * *
69207384 CGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
65 CGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
*
69207449 CTCACAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
130 CTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
* * *
69207486 CTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTTAACTCGCCACTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
* *
69207551 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
69207616 TCACAATATGAGTTGATTTTTTTT-AAAGGCAGAAA
131 TCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
* * *
69207651 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGTCACTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
* *
69207716 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
*
69207781 TCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAA
131 TCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
* *
69207817 TTGAAAAACGAAAATTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
* * *
69207882 GAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAAATTGAAAATACCTCGGTGTGACCTGAG
66 GAGTTGA-T-TTT--------T--T--TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAG
* * * * ** *
69207947 GCTCAACTCACCTCTCGCAATACGAGCTGA--TTCTTTCAAAAACATAATA
117 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAA-A
* * *
69207996 ATGAAGATA--GAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAA-AAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATA
* *
69208057 TGAGCTGATTTT
65 CGAGTTGATTTT
69208069 GAAAAAGTAG
Statistics
Matches: 963, Mismatches: 87, Indels: 89
0.85 0.08 0.08
Matches are distributed among these distances:
160 7 0.01
161 69 0.07
164 1 0.00
165 161 0.17
166 225 0.23
167 2 0.00
168 43 0.04
169 2 0.00
170 32 0.03
172 31 0.03
173 17 0.02
174 48 0.05
175 76 0.08
176 61 0.06
177 87 0.09
178 33 0.03
179 5 0.01
180 63 0.07
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (166 bp):
TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
Found at i:69207725 original size:91 final size:88
Alignment explanation
Indices: 69207572--69207746 Score: 226
Period size: 91 Copynumber: 2.0 Consensus size: 88
69207562 TTTGACAACA
* * *
69207572 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCACAATACGAGTTGATTTTT
*
69207637 TTTA-AAGGCAGAAATTGAAAAACG
66 TTGACAA--CAGAAATTGAAAAACG
* * ** *
69207661 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGTCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCACAATACGAGTTGATTT
69207726 TTTTGACAACAGAAATTGAAA
64 TTTTGACAACAGAAATTGAAA
69207747 TTACCTCAGC
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
89 22 0.30
90 12 0.16
91 38 0.51
92 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCACAATACGAGTTGATTTTT
TTGACAACAGAAATTGAAAAACG
Found at i:69207742 original size:331 final size:330
Alignment explanation
Indices: 69206807--69208068 Score: 1402
Period size: 331 Copynumber: 3.7 Consensus size: 330
69206797 GTTGATTTTT
* * * * * *
69206807 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGAAATA
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
** * * **
69206871 TAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
65 CGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
* *
69206935 CTCGCAATATGAGTTGA--ATTTTGAAA-GCAGAAATTGAAAAATGGAAATTGAAAATACCTCGG
130 CTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGG
* * * * * * *
69206997 TGTGTGA-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTG
195 CGTGTGACT-TGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTG-ACAACAGAAATT-
* * * *
69207060 AAGTAAAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-
257 --G------AAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
69207124 TTTTTTTGAAAGACAGAAA
312 TTTTTTTGAAAGACAGAAA
* *
69207143 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* * *
69207208 GAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCA
66 GAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCA
* *
69207272 CCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAAAAATTGAAAATTGAAAAATGAAAATTG
127 CCTCTCGCAATATGAGTTGA-TTTTTTTT-AAAGGC----A--G-AAATTGAAAAATGGAAATTG
* * *
69207337 AAAATACCTCGGCGTGTGACCTGAGGCTCAACAT-GCCGCTCGTAATACGAGTTGACTTTTTTGA
183 AAAATACCTCGGCGTGTGACTTGAGGCTCAAC-TCGCCACTCGCAATACGAGTTGA-TTTTTTGA
*
69207401 CAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA
246 CAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
69207466 TTTTTTTTGAAAGGCAGAAA
311 TTTTTTTTGAAAGACAGAAA
* * * * *
69207486 CTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTTAACTCGCCACTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
* *
69207551 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* *
69207616 TCACAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
131 TCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGGC
*
69207681 GTGTGACTTGAGGCTCAACTCGTCACTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAA
196 GTGTGACTTGAGGCTCAACTCGCCACTCGCAATACGAGTTGA-TTTTTTGACAACAGAAATTGAA
69207746 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGA
260 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGA
69207811 CAGAAA
325 CAGAAA
* *
69207817 TTGAAAAAC-GAAAATTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATA
1 TTGAAAAACAG-AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* * *
69207881 CGAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAAATTGAAAATACCTCGGTGTGACCTGA
65 CGAGTTGA-T-TTT--------T--T--TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGA
* * * * ** * * * *
69207946 GGCTCAACTCACCTCTCGCAATACGAGCTGA-TTCTTTCAAAAACATAATAATG-AAGATAGAAA
116 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGGCAGAA-ATTGAAAAATGGAAA
* * * * *
69208009 TTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
180 TTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTT
69208069 GAAAAAGTAG
Statistics
Matches: 801, Mismatches: 84, Indels: 77
0.83 0.09 0.08
Matches are distributed among these distances:
330 2 0.00
331 224 0.28
332 2 0.00
333 3 0.00
334 1 0.00
335 1 0.00
336 62 0.08
337 10 0.01
338 26 0.03
339 10 0.01
340 68 0.08
341 6 0.01
342 86 0.11
343 98 0.12
344 53 0.07
345 65 0.08
349 1 0.00
350 1 0.00
351 1 0.00
352 65 0.08
353 10 0.01
354 6 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (330 bp):
TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTTAAAGGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGGC
GTGTGACTTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAA
TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGAC
AGAAA
Found at i:69207961 original size:88 final size:88
Alignment explanation
Indices: 69207733--69208066 Score: 447
Period size: 88 Copynumber: 3.8 Consensus size: 88
69207723 TTTTTTTGAC
* * * * *
69207733 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGA-
* * * * *
69207798 TTTTTTTGAAAGACAGAA-ATTGAA
65 -TTCTTTCAAAAACATAATAATGAA
* * *
69207822 AA-ACGAAAATTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AACA-G-AAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGC
69207886 TGATTCTTTCAAAAACATAATAATGAA
62 TGATTCTTTCAAAAACATAATAATGAA
*
69207913 AACAGAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGAT
69207978 TCTTTCAAAAACATAATAATGAA
66 TCTTTCAAAAACATAATAATGAA
* * *
69208001 GATAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGAT
69208066 T
66 T
69208067 TTGAAAAAGT
Statistics
Matches: 220, Mismatches: 19, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
88 125 0.57
89 3 0.01
90 46 0.21
91 8 0.04
92 38 0.17
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (88 bp):
AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGAT
TCTTTCAAAAACATAATAATGAA
Found at i:69207966 original size:180 final size:176
Alignment explanation
Indices: 69207733--69208066 Score: 456
Period size: 180 Copynumber: 1.9 Consensus size: 176
69207723 TTTTTTTGAC
* * * *
69207733 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGA-
* * * * *
69207798 TTTTTTTGAAAGACAGAA-ATTGAA-AAACGAAAATTGAAAATACCTTGGCGTGTGACCTGAGGC
65 -TTCTTTCAAAAACAGAATAATGAAGAAA-G-AAATTGAAAATACCTCGGC--GTGACCTGAGGC
* *
69207861 TCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAA
125 TCAACTCACCTCTCGCAATACGAGCTGATTCTTTCAAAAACATAATAATGAA
* *
69207913 AACAGAAATTGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGAT
* *
69207978 TCTTTCAAAAACATAATAATGAAGATAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
66 TCTTTCAAAAACAGAATAATGAAGAAAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
*
69208043 CACCTCTCGCAATATGAGCTGATT
131 CACCTCTCGCAATACGAGCTGATT
69208067 TTGAAAAAGT
Statistics
Matches: 136, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
176 39 0.29
178 31 0.23
179 6 0.04
180 60 0.44
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (176 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGAT
TCTTTCAAAAACAGAATAATGAAGAAAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACT
CACCTCTCGCAATACGAGCTGATTCTTTCAAAAACATAATAATGAA
Found at i:69208237 original size:72 final size:72
Alignment explanation
Indices: 69208097--69208285 Score: 220
Period size: 72 Copynumber: 2.6 Consensus size: 72
69208087 AGGTTTAACC
* * * * * * ** *
69208097 CACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAGATTACCTCATCGTGTCCTGAG
1 CACCTCTCGCAATATGAGTTGA-TATTGAAAAACAAAAATTGAAAATACCTCAGCGTACCCCGAG
69208162 GCTCAACT
65 GCTCAACT
* *
69208170 CACCTCTCGCAATATAAGTTGAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTACCCCGAG
1 CACCTCTCGCAATATGAGTTGATATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTACCCCGAG
69208234 GCTCAACT
65 GCTCAACT
* * *
69208242 CACCTTTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 CACCTCTCGCAATATGAGTTGATATTGAAAAACAAAAATTGAAAA
69208286 GGCTTAACTC
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
71 7 0.07
72 66 0.67
73 25 0.26
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (72 bp):
CACCTCTCGCAATATGAGTTGATATTGAAAAACAAAAATTGAAAATACCTCAGCGTACCCCGAGG
CTCAACT
Found at i:69218451 original size:13 final size:13
Alignment explanation
Indices: 69218433--69218457 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69218423 ATATATTTGG
69218433 AAATAATAATATA
1 AAATAATAATATA
69218446 AAATAATAATAT
1 AAATAATAATAT
69218458 GTACATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATAATAATATA
Found at i:69219017 original size:21 final size:18
Alignment explanation
Indices: 69218973--69219037 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 18
69218963 ATGTATATAT
69218973 AAAGAAAGAAAAAATAGCAC
1 AAAGAAAGAAAAAA-AG-AC
69218993 AAAGAAAGAAAAAAAGATTC
1 AAAGAAAGAAAAAAAGA--C
* *
69219013 GAAAGAAGAGGAAAAAAGAA
1 -AAAGAA-AGAAAAAAAGAC
69219033 AAAGA
1 AAAGA
69219038 TGCAACCTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 1 0.03
19 7 0.18
20 15 0.38
21 6 0.15
22 10 0.26
ACGTcount: A:0.71, C:0.05, G:0.20, T:0.05
Consensus pattern (18 bp):
AAAGAAAGAAAAAAAGAC
Found at i:69219325 original size:20 final size:20
Alignment explanation
Indices: 69219302--69219359 Score: 89
Period size: 21 Copynumber: 2.9 Consensus size: 20
69219292 TTTTTGGGGG
*
69219302 GGGTTTGGTTTTTTTTTTTT
1 GGGTTAGGTTTTTTTTTTTT
69219322 GGGTTAGGTTTTTTCTTTTTT
1 GGGTTAGGTTTTTT-TTTTTT
*
69219343 TGGTTAGGTTTTTTTTT
1 GGGTTAGGTTTTTTTTT
69219360 GGGGAGGGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 16 0.46
21 19 0.54
ACGTcount: A:0.03, C:0.02, G:0.24, T:0.71
Consensus pattern (20 bp):
GGGTTAGGTTTTTTTTTTTT
Found at i:69224825 original size:70 final size:70
Alignment explanation
Indices: 69224722--69224974 Score: 280
Period size: 70 Copynumber: 3.6 Consensus size: 70
69224712 TTGCTAAGTA
* *
69224722 TGTTGGAAGCTACGG-TTTTTATCCTACGAGCCTTAGTATGGA-AGCTTA-GAGCTTTGCTCTCG
1 TGTTGAAAGCTACGGTTTTTTATCCTGCGAGCCTTAGTAT-GACAGC-TAGGAGCTTTGCTCTCG
69224784 CTAGCTG
64 CTAGCTG
* *
69224791 TGTTGAAAGCTGCGGTTTTTTATCCTGCGAGCCTTAGTATGACAGCTAGGAGCTTTGCTCTTGCT
1 TGTTGAAAGCTACGGTTTTTTATCCTGCGAGCCTTAGTATGACAGCTAGGAGCTTTGCTCTCGCT
*
69224856 AACTG
66 AGCTG
* * * * * *
69224861 TGTT-AGAGGCTACGATTTTTTATCTTGCGAGTCTTAGTATGACAGCTAGGAGCTTTGTTATCGC
1 TGTTGA-AAGCTACGGTTTTTTATCCTGCGAGCCTTAGTATGACAGCTAGGAGCTTTGCTCTCGC
* *
69224925 TAGTTA
65 TAGCTG
* * * * * *
69224931 TGTTGGAGGCTGCAGTTTTTTATCTTGCGAACCTTAGTATGACA
1 TGTTGAAAGCTACGGTTTTTTATCCTGCGAGCCTTAGTATGACA
69224975 CAAATGTTGT
Statistics
Matches: 157, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
69 18 0.11
70 139 0.89
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (70 bp):
TGTTGAAAGCTACGGTTTTTTATCCTGCGAGCCTTAGTATGACAGCTAGGAGCTTTGCTCTCGCT
AGCTG
Found at i:69227013 original size:43 final size:43
Alignment explanation
Indices: 69226965--69227105 Score: 180
Period size: 43 Copynumber: 3.3 Consensus size: 43
69226955 TATCCCATAT
69226965 ATGGTCTTACACGTTATCACATATCGATGCCAATGGCCCAGAC
1 ATGGTCTTACACGTTATCACATATCGATGCCAATGGCCCAGAC
** * *
69227008 ATGGTCTTACACGAAATCATATAACGATGCCAATGTG-CCAGAC
1 ATGGTCTTACACGTTATCACATATCGATGCCAATG-GCCCAGAC
* *
69227051 ATGGTCTTACAC-TTAATCGCAATATC-ATGCCAATGCCCCAGAC
1 ATGGTCTTACACGTT-ATCAC-ATATCGATGCCAATGGCCCAGAC
69227094 ATGGTCTTACAC
1 ATGGTCTTACAC
69227106 ATAATCACGT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
43 79 0.94
44 5 0.06
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGTTATCACATATCGATGCCAATGGCCCAGAC
Found at i:69232353 original size:12 final size:12
Alignment explanation
Indices: 69232310--69232352 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
69232300 TAGTTTATTA
69232310 ATATTTTT-ATT
1 ATATTTTTAATT
69232321 -TGATTTTTAATT
1 AT-ATTTTTAATT
69232333 ATATTTTTAATT
1 ATATTTTTAATT
69232345 ATTATTTT
1 A-TATTTT
69232353 ATTTAGTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 1 0.04
11 6 0.21
12 14 0.50
13 7 0.25
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (12 bp):
ATATTTTTAATT
Found at i:69236641 original size:25 final size:25
Alignment explanation
Indices: 69236607--69236658 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
69236597 TAATTACAGG
* *
69236607 TATGTATACTAAACTTTGTATGTGA
1 TATGCATACTAAACTTAGTATGTGA
69236632 TATGCATACTAAACTTAGTATGTGA
1 TATGCATACTAAACTTAGTATGTGA
69236657 TA
1 TA
69236659 AGATGTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (25 bp):
TATGCATACTAAACTTAGTATGTGA
Found at i:69238121 original size:20 final size:20
Alignment explanation
Indices: 69238077--69238123 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
69238067 CTTGTATGAG
* *
69238077 ATTGCACTTTGGTGCCTCTG
1 ATTGCACTTCGGTGCCTCTA
*
69238097 TTTGCACTTCGGTGCCTCTA
1 ATTGCACTTCGGTGCCTCTA
69238117 ATTGCAC
1 ATTGCAC
69238124 AATTTTGCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.13, C:0.28, G:0.21, T:0.38
Consensus pattern (20 bp):
ATTGCACTTCGGTGCCTCTA
Found at i:69246213 original size:20 final size:20
Alignment explanation
Indices: 69246190--69246242 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
69246180 ACAGCAACTC
*
69246190 ATCCGTATAAACAGTACTAA
1 ATCCGTATAAACAGTAATAA
* * **
69246210 ATCCATATAAATAGTAATTC
1 ATCCGTATAAACAGTAATAA
69246230 ATCCGTATAAACA
1 ATCCGTATAAACA
69246243 CATACCTTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (20 bp):
ATCCGTATAAACAGTAATAA
Found at i:69248418 original size:19 final size:19
Alignment explanation
Indices: 69248396--69248437 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
69248386 AAACAACTAG
*
69248396 TTCGGCTTAGTCCACTTGC
1 TTCGACTTAGTCCACTTGC
69248415 TTCGACTTAGTCCACTTGC
1 TTCGACTTAGTCCACTTGC
69248434 TTCG
1 TTCG
69248438 CTTTCCCCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.12, C:0.31, G:0.19, T:0.38
Consensus pattern (19 bp):
TTCGACTTAGTCCACTTGC
Found at i:69252398 original size:42 final size:42
Alignment explanation
Indices: 69252275--69252474 Score: 258
Period size: 42 Copynumber: 4.7 Consensus size: 42
69252265 TACCAATCCA
* * * * *
69252275 ATGCCATATCCAAGATATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAG-TATCATATCG
* * * * * *
69252317 ATGCCAATAGCCTAGCTATGGTTTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAGTATCATATCG
*
69252360 ATGCCATATCCCAGATATGATCTTACACGTAGTATCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTATCATATCG
*
69252402 ATGCCATATCCCAGATATGATCTTACACGTAGTATCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTATCATATCG
69252444 ATGCCATATCCCAGATATGGTCTTACACGTA
1 ATGCCATATCCCAGATATGGTCTTACACGTA
69252475 ATCTCAGTAA
Statistics
Matches: 141, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 107 0.76
43 33 0.23
44 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTATCATATCG
Found at i:69262809 original size:38 final size:38
Alignment explanation
Indices: 69262767--69262854 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 38
69262757 GTCCAACCCA
* * **
69262767 ACACACCATATGTGGATAAAATTGACCCACCCATCCCT
1 ACACACCATATGGGGATAAAATCGACCCACCCAAACCT
*
69262805 ACACACCAAATATGGGGATAAAATCGACCCATCCAAACCT
1 ACACACC--ATATGGGGATAAAATCGACCCACCCAAACCT
69262845 ACACACCATA
1 ACACACCATA
69262855 AAGTACCGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
38 10 0.23
40 33 0.77
ACGTcount: A:0.40, C:0.33, G:0.10, T:0.17
Consensus pattern (38 bp):
ACACACCATATGGGGATAAAATCGACCCACCCAAACCT
Found at i:69269502 original size:39 final size:40
Alignment explanation
Indices: 69269404--69269545 Score: 180
Period size: 39 Copynumber: 3.5 Consensus size: 40
69269394 CTCGAATGAT
*
69269404 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTAC
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACTAC
*
69269445 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTA-
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACTAC
* * * *
69269484 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAC
* *
69269524 ATCCGGGTTAAGACCCGAAGGC
1 ATCCGGGCTAAGTCCCGAAGGC
69269546 CTTGTGCGGG
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.37
40 28 0.31
41 27 0.30
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTAC
Found at i:69272157 original size:38 final size:38
Alignment explanation
Indices: 69272107--69272202 Score: 138
Period size: 40 Copynumber: 2.5 Consensus size: 38
69272097 CCAACTCCGT
*
69272107 CCAACCCAACACACCATATGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCATATGGGGATAAAATCGACCCAC
* * *
69272145 CCATCCCTACACACTAAATATGGGGATAAAATCGACCCAT
1 CCAACCCTACACAC--CATATGGGGATAAAATCGACCCAC
69272185 CCAACCCTACACACCATA
1 CCAACCCTACACACCATA
69272203 AAGTACCATA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
38 15 0.30
40 35 0.70
ACGTcount: A:0.39, C:0.36, G:0.10, T:0.15
Consensus pattern (38 bp):
CCAACCCTACACACCATATGGGGATAAAATCGACCCAC
Found at i:69275540 original size:13 final size:14
Alignment explanation
Indices: 69275514--69275545 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
69275504 ACTAACAACG
69275514 AATTAAACCATTAT
1 AATTAAACCATTAT
69275528 AATTAAA-CATTAT
1 AATTAAACCATTAT
69275541 AATTA
1 AATTA
69275546 TTTATAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:69280830 original size:70 final size:72
Alignment explanation
Indices: 69280732--69280970 Score: 290
Period size: 70 Copynumber: 3.3 Consensus size: 72
69280722 TAAGATATGA
*
69280732 TATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGT-A-TTA
1 TATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATATAAGTTA
69280795 TGTAAGT
66 TGTAAGT
* * *
69280802 TATGATATGATATATATTTATGTAAGTTATGTAAGTTAT-ATAT-TTATCTAAGTTATATAAGTT
1 TATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATATGATATAT-ATTTATATAAGTT
69280865 ATGTAAGT
65 ATGTAAGT
* * * *
69280873 TATG-TAAGTTATATATTTATCTAAGTTATGTAAGTTATGTAAGTTATGTAAATTATATTTATAT
1 TATGATATGATATATATTTATGTAAGTTATGTAAGTTATG--A--TATG-ATA-TATATTTATAT
*
69280937 AAGTTATATAAGT
60 AAGTTATGTAAGT
69280950 TAATGATATGATATATATTTA
1 T-ATGATATGATATATATTTA
69280971 ACATTAAGAT
Statistics
Matches: 142, Mismatches: 14, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
68 4 0.03
69 10 0.07
70 71 0.50
71 14 0.10
73 1 0.01
75 3 0.02
77 21 0.15
78 5 0.04
79 13 0.09
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.48
Consensus pattern (72 bp):
TATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATATAAGTTA
TGTAAGT
Found at i:69280870 original size:35 final size:35
Alignment explanation
Indices: 69280760--69280919 Score: 182
Period size: 35 Copynumber: 4.6 Consensus size: 35
69280750 TATGTAAGTT
* *
69280760 ATGTAAGTTATGATATGATATATATTTATGT-A-TT
1 ATGTAAGTTATG-TAAGTTATATATTTATGTAAGTT
* *
69280794 ATGTAAGTTATGATATGATATATATTTATGTAAGTT
1 ATGTAAGTTATG-TAAGTTATATATTTATGTAAGTT
* * * * *
69280830 ATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTT
1 ATGTAAGTTATGTAAGTTATAT-ATTTATGTAAGTT
*
69280865 ATGTAAGTTATGTAAGTTATATATTTATCTAAGTT
1 ATGTAAGTTATGTAAGTTATATATTTATGTAAGTT
69280900 ATGTAAGTTATGTAAGTTAT
1 ATGTAAGTTATGTAAGTTAT
69280920 GTAAATTATA
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
34 35 0.32
35 56 0.51
36 19 0.17
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.48
Consensus pattern (35 bp):
ATGTAAGTTATGTAAGTTATATATTTATGTAAGTT
Found at i:69280875 original size:44 final size:44
Alignment explanation
Indices: 69280819--69280951 Score: 225
Period size: 44 Copynumber: 3.1 Consensus size: 44
69280809 TGATATATAT
69280819 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
*
69280863 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
* *
69280907 TTATGTAAGTTATGTAA-AT-TATATTTATATAAGTTATATAAG
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
69280949 TTA
1 TTA
69280952 ATGATATGAT
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
42 24 0.28
43 1 0.01
44 60 0.71
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.48
Consensus pattern (44 bp):
TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAG
Found at i:69280948 original size:9 final size:9
Alignment explanation
Indices: 69280690--69280928 Score: 175
Period size: 9 Copynumber: 26.4 Consensus size: 9
69280680 TATTTATGTA
69280690 TTATGTAAG
1 TTATGTAAG
*
69280699 TTAAGTAAG
1 TTATGTAAG
*
69280708 TTTTGTAAG
1 TTATGTAAG
69280717 TTATGTAAG
1 TTATGTAAG
* *
69280726 ATATGATATG
1 TTATG-TAAG
* *
69280736 ATATGATATATAT
1 -T-T-ATGTA-AG
69280749 TTATGTAAG
1 TTATGTAAG
69280758 TTATGTAAG
1 TTATGTAAG
*
69280767 TTATGATATG
1 TTATG-TAAG
* * *
69280777 ATATAT-AT
1 TTATGTAAG
69280785 TTATGT-A-
1 TTATGTAAG
69280792 TTATGTAAG
1 TTATGTAAG
*
69280801 TTATGATATG
1 TTATG-TAAG
* * *
69280811 ATATAT-AT
1 TTATGTAAG
69280819 TTATGTAAG
1 TTATGTAAG
69280828 TTATGTAAG
1 TTATGTAAG
* *
69280837 TTATAT-AT
1 TTATGTAAG
*
69280845 TTATCTAAG
1 TTATGTAAG
*
69280854 TTATATAAG
1 TTATGTAAG
69280863 TTATGTAAG
1 TTATGTAAG
69280872 TTATGTAAG
1 TTATGTAAG
* *
69280881 TTATAT-AT
1 TTATGTAAG
*
69280889 TTATCTAAG
1 TTATGTAAG
69280898 TTATGTAAG
1 TTATGTAAG
69280907 TTATGTAAG
1 TTATGTAAG
*
69280916 TTATGTAAA
1 TTATGTAAG
69280925 TTAT
1 TTAT
69280929 ATTTATATAA
Statistics
Matches: 179, Mismatches: 39, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
7 6 0.03
8 22 0.12
9 125 0.70
10 19 0.11
11 1 0.01
12 4 0.02
13 2 0.01
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:69281137 original size:16 final size:16
Alignment explanation
Indices: 69281095--69281154 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
69281085 ATAAGTTTTA
69281095 AAAACATT-TTAAAAT
1 AAAACATTATTAAAAT
*
69281110 ATTAA-A-TATTAAAAT
1 A-AAACATTATTAAAAT
*
69281125 AAAACATTATTAATAT
1 AAAACATTATTAAAAT
* *
69281141 AAAAAATTAATAAA
1 AAAACATTATTAAA
69281155 TATGATGTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
14 3 0.09
15 11 0.31
16 21 0.60
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAACATTATTAAAAT
Found at i:69281685 original size:23 final size:23
Alignment explanation
Indices: 69281655--69281700 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
69281645 CTTTTTTATT
*
69281655 ATTATCAAATGAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
69281678 ATTATCAAATAAATTTTCTTAAC
1 ATTATCAAATAAATTTTCTTAAC
69281701 CAAATACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATCAAATAAATTTTCTTAAC
Found at i:69281880 original size:6 final size:6
Alignment explanation
Indices: 69281871--69281916 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
69281861 TCTTTCCCCT
* *
69281871 CCTCTC CCTCTC CCTCTC CCTCTC TCC-CTC TCTCCC CCTCTC CCTC
1 CCTCTC CCTCTC CCTCTC CCTCTC -CCTCTC CCTCTC CCTCTC CCTC
69281917 CCTCAACTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 1 0.03
6 31 0.91
7 2 0.06
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCTCTC
Found at i:69281881 original size:20 final size:20
Alignment explanation
Indices: 69281857--69281912 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
69281847 TCTCTCTCTA
*
69281857 TCTCTCTTTCCCCTCCTCTCCC
1 TCTCTCTCT-CCCT-CTCTCCC
*
69281879 TCTCCCTCTCCCTCTCTCCC
1 TCTCTCTCTCCCTCTCTCCC
69281899 TCTCTC-C-CCCTCTC
1 TCTCTCTCTCCCTCTC
69281913 CCTCCCTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 1 0.03
20 12 0.39
21 4 0.13
22 7 0.23
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (20 bp):
TCTCTCTCTCCCTCTCTCCC
Found at i:69281884 original size:16 final size:16
Alignment explanation
Indices: 69281865--69281916 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 16
69281855 TATCTCTCTT
69281865 TCCCCTCCTCTCCCTC
1 TCCCCTCCTCTCCCTC
69281881 TCCCTCTCCCTCTCTCCCTC
1 TCCC-CT--C-CTCTCCCTC
69281901 TCTCCC-CCTCTCCCTC
1 TC-CCCTCCTCTCCCTC
69281917 CCTCAACTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 13 0.42
17 3 0.10
19 1 0.03
20 12 0.39
21 2 0.06
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (16 bp):
TCCCCTCCTCTCCCTC
Found at i:69281897 original size:8 final size:8
Alignment explanation
Indices: 69281884--69281916 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
69281874 CTCCCTCTCC
69281884 CTCTCCCT
1 CTCTCCCT
69281892 CTCTCCCT
1 CTCTCCCT
*
69281900 CTCTCCCC
1 CTCTCCCT
69281908 CTCTCCCT
1 CTCTCCCT
69281916 C
1 C
69281917 CCTCAACTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (8 bp):
CTCTCCCT
Found at i:69282284 original size:25 final size:25
Alignment explanation
Indices: 69282256--69282323 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
69282246 CTAGAGAAGT
69282256 AGCAGAGGGATGCCGACGGAGATGC
1 AGCAGAGGGATGCCGACGGAGATGC
* *
69282281 AGCAGAGGGATGCCGACGGATATGT
1 AGCAGAGGGATGCCGACGGAGATGC
* *
69282306 AGTAGAGGGCTGCCGACG
1 AGCAGAGGGATGCCGACG
69282324 ACGATGCCGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.26, C:0.19, G:0.43, T:0.12
Consensus pattern (25 bp):
AGCAGAGGGATGCCGACGGAGATGC
Found at i:69282483 original size:24 final size:24
Alignment explanation
Indices: 69282438--69282483 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
69282428 ACCCAAGATA
* *
69282438 TATGCATATTGATATGTGTATATG
1 TATGCATATTGATATATATATATG
69282462 TATGCATATTGATATATATATA
1 TATGCATATTGATATATATATA
69282484 CACATTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (24 bp):
TATGCATATTGATATATATATATG
Found at i:69285344 original size:40 final size:40
Alignment explanation
Indices: 69285250--69285350 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
69285240 TATTTAAACT
*
69285250 TTTAGCGGCGTTTTTACAAAAGTGCTGCTAAATCTCAATC
1 TTTAGCGGCGTTTTTACAAAAGTGCAGCTAAATCTCAATC
* * * * *
69285290 TTTTGCAGCGTTTTTACAAAATTGCAGCTAATTCTCGATC
1 TTTAGCGGCGTTTTTACAAAAGTGCAGCTAAATCTCAATC
* * *
69285330 TTTAGTGGCATTTTTAGAAAA
1 TTTAGCGGCGTTTTTACAAAA
69285351 ACGCCGCTAA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTACAAAAGTGCAGCTAAATCTCAATC
Found at i:69287222 original size:20 final size:20
Alignment explanation
Indices: 69287205--69287244 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
69287195 TTTTTTATTA
69287205 ATTATTTGTACATATTATAT
1 ATTATTTGTACATATTATAT
69287225 ATTATTTGTACATA-TATAT
1 ATTATTTGTACATATTATAT
69287244 A
1 A
69287245 CTTTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.53
Consensus pattern (20 bp):
ATTATTTGTACATATTATAT
Found at i:69289461 original size:22 final size:21
Alignment explanation
Indices: 69289429--69289485 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 21
69289419 ATCAATTAAC
*
69289429 CCTTAAACCTTATACACTAA-T
1 CCTTAAACCTTA-ACACTAAGA
69289450 CCTTAAAACCTTGAACACTAAGA
1 CCTT-AAACCTT-AACACTAAGA
69289473 CCTTAAACCTTAA
1 CCTTAAACCTTAA
69289486 ATACTTGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.19
22 21 0.66
23 5 0.16
ACGTcount: A:0.40, C:0.28, G:0.04, T:0.28
Consensus pattern (21 bp):
CCTTAAACCTTAACACTAAGA
Found at i:69289850 original size:28 final size:29
Alignment explanation
Indices: 69289819--69289881 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
69289809 ATGGATTAGT
69289819 GTTTAGGGTTT-ATGTTTTAAAATTTAA-G
1 GTTTAGGGTTTAATG-TTTAAAATTTAAGG
*
69289847 GTTTAGGGTTTAATGTTTAAGATTTAAGG
1 GTTTAGGGTTTAATGTTTAAAATTTAAGG
69289876 GTTTAG
1 GTTTAG
69289882 AGAAAACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 22 0.69
29 10 0.31
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (29 bp):
GTTTAGGGTTTAATGTTTAAAATTTAAGG
Found at i:69289858 original size:21 final size:21
Alignment explanation
Indices: 69289820--69289880 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
69289810 TGGATTAGTG
* * *
69289820 TTTAGGGTTTATGTTTTAAAA
1 TTTAAGGTTTAGGGTTTAAAA
**
69289841 TTTAAGGTTTAGGGTTTAATG
1 TTTAAGGTTTAGGGTTTAAAA
*
69289862 TTTAAGATTTAAGGGTTTA
1 TTTAAGGTTT-AGGGTTTA
69289881 GAGAAAACCA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 25 0.76
22 8 0.24
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (21 bp):
TTTAAGGTTTAGGGTTTAAAA
Found at i:69290356 original size:41 final size:41
Alignment explanation
Indices: 69290174--69290366 Score: 183
Period size: 41 Copynumber: 4.7 Consensus size: 41
69290164 TTTTGCGGCA
* *
69290174 TTTGGACCAAAAACGCCGCTATTGATCTG-TTTTAGTGGTG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
69290214 TTTGGACCAAAAACGCCGCTACTGCTCAGTTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
** ** * * *
69290255 TTTTAAATAAAAGCGCCGCTATTCATCAATTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * ** *
69290296 TTT-TAGCTAAAAGTGCCGCTATTGATCAGTTTCTAGTGGCG
1 TTTGGA-CCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* ** *
69290337 TTTGGGCCAAAAATACCGCTATTGTTCAGT
1 TTTGGACCAAAAACGCCGCTATTGATCAGT
69290367 GAAAAGGCCG
Statistics
Matches: 125, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
40 27 0.22
41 98 0.78
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
Found at i:69293676 original size:8 final size:8
Alignment explanation
Indices: 69293665--69293689 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69293655 TTCAATAAGA
69293665 TATTTTAT
1 TATTTTAT
69293673 TATTTTAT
1 TATTTTAT
69293681 TATTTTAT
1 TATTTTAT
69293689 T
1 T
69293690 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:69295787 original size:13 final size:13
Alignment explanation
Indices: 69295769--69295793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69295759 TCTTCTCTCC
69295769 TCTCTCATTTTCT
1 TCTCTCATTTTCT
69295782 TCTCTCATTTTC
1 TCTCTCATTTTC
69295794 CCATTCAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.00, T:0.60
Consensus pattern (13 bp):
TCTCTCATTTTCT
Found at i:69304364 original size:93 final size:93
Alignment explanation
Indices: 69304251--69304421 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
69304241 GCCCATAAGT
* *
69304251 GAACTCGGAATCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69304316 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
69304344 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69304409 CGAGTTCGGATGC
66 CGAGCTCGGATGC
69304422 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:69304418 original size:46 final size:46
Alignment explanation
Indices: 69304243--69304418 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
69304233 TGTAACCCGC
* * *
69304243 CCATAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
69304289 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
69304335 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
69304382 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
69304419 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:69305731 original size:47 final size:47
Alignment explanation
Indices: 69305668--69306069 Score: 570
Period size: 47 Copynumber: 8.4 Consensus size: 47
69305658 CCCTTCGGGA
* * * * *
69305668 CTTATCACATTTATACACTTTCACATCCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69305715 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69305762 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69305809 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69305856 CTTATCACATATAAGTGTATATTCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--AT-A---TATA--CACTTTCACATTCATCACATCGGCCATTAGGC
69305911 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69305958 CATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69306005 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69306052 CTTATCACATATACACAC
1 CTTATCACATATATACAC
69306070 CTTGTACACC
Statistics
Matches: 327, Mismatches: 20, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 274 0.84
49 6 0.02
50 1 0.00
52 1 0.00
53 5 0.02
55 40 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69306014 original size:22 final size:22
Alignment explanation
Indices: 69305986--69306061 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
69305976 TTTCACATTC
69305986 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
69306008 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
69306032 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
69306055 ATCACAT
1 ATCACAT
69306062 ATACACACCT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:69306017 original size:196 final size:196
Alignment explanation
Indices: 69305683--69306064 Score: 674
Period size: 196 Copynumber: 1.9 Consensus size: 196
69305673 CACATTTATA
*
69305683 CACTTTCACATCCATCATATTGGCCATTCGGCCTTATCACATATATACACCTTCACATCCATCAC
1 CACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATCCATCAC
* * * *
69305748 ATCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ATCGGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
69305813 TCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAAGTGTATAT
131 TCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAAGTGTATAT
69305878 T
196 T
* * *
69305879 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATCCATCAC
69305944 ATCGGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ATCGGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69306009 TCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
131 TCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
69306065 CACACCTTGT
Statistics
Matches: 176, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
196 176 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (196 bp):
CACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATCCATCAC
ATCGGCCATTAGGCCATATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAAGTGTATAT
T
Found at i:69310166 original size:59 final size:59
Alignment explanation
Indices: 69310071--69310186 Score: 178
Period size: 59 Copynumber: 2.0 Consensus size: 59
69310061 TCAATGAATA
* * *
69310071 ATTCAAGCTTTGAAGAGACCTTATTACCATTAAAGAAGTTAATAACTTCATTTTTAATT
1 ATTCAAGCTTTGAAAAGACCTTATTACCATTAAAGAACTAAATAACTTCATTTTTAATT
* * *
69310130 ATTCAAGCTTTGAAAAGACGTTATTATCATTTAAGAACTAAATAACTTCATTTTTAA
1 ATTCAAGCTTTGAAAAGACCTTATTACCATTAAAGAACTAAATAACTTCATTTTTAA
69310187 AAATTTTGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (59 bp):
ATTCAAGCTTTGAAAAGACCTTATTACCATTAAAGAACTAAATAACTTCATTTTTAATT
Found at i:69315044 original size:31 final size:31
Alignment explanation
Indices: 69315000--69315068 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
69314990 CCTATTAGGC
*
69315000 CGTGTAGG-CCACACGAGTTAACCATACGAG
1 CGTGTGGGCCCACACGAGTTAACCATACGAG
* *
69315030 TGTGTGGGCCCACACGGGTTAACCATACGAG
1 CGTGTGGGCCCACACGAGTTAACCATACGAG
69315061 CGTGTGGG
1 CGTGTGGG
69315069 ATTTTGGGCC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 6 0.18
31 28 0.82
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (31 bp):
CGTGTGGGCCCACACGAGTTAACCATACGAG
Found at i:69321867 original size:15 final size:15
Alignment explanation
Indices: 69321847--69321903 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
69321837 GGAGTAAGGC
69321847 AATCAAAACTCATGT
1 AATCAAAACTCATGT
* ***
69321862 AATCAAAACTTAAAAC
1 AATCAAAAC-TCATGT
*
69321878 AATATAAAACTCATGT
1 AAT-CAAAACTCATGT
69321894 AATCAAAACT
1 AATCAAAACT
69321904 TAAAAAGAAG
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
15 15 0.50
16 10 0.33
17 5 0.17
ACGTcount: A:0.54, C:0.18, G:0.04, T:0.25
Consensus pattern (15 bp):
AATCAAAACTCATGT
Found at i:69325016 original size:144 final size:144
Alignment explanation
Indices: 69324751--69325040 Score: 562
Period size: 144 Copynumber: 2.0 Consensus size: 144
69324741 GTGGTTAATT
69324751 TAATTTTCCAAAATTAAGTGCAGGTTTCACACAGCCAGACACACGCTCGTGTTCTGGGCCGTGTA
1 TAATTTTCCAAAATTAAGTGCAGGTTTCACACAGCCAGACACACGCTCGTGTTCTGGGCCGTGTA
*
69324816 GCACACATGGCTAAGACACATGCTCGTGTCTTTGCTTGTGTGCTCAATTCTAAGCATTCTGTTTC
66 GCACACATGGCTAAGACACATGCTCGTGTCTTTGCTTGTGTGCTCAATTCTAAGCATGCTGTTTC
69324881 TCAAATTTAAGATA
131 TCAAATTTAAGATA
69324895 TAATTTTCCAAAATTAAGTGCAGGTTTCACACAGCCAGACACACGCTCGTGTTCTGGGCCGTGTA
1 TAATTTTCCAAAATTAAGTGCAGGTTTCACACAGCCAGACACACGCTCGTGTTCTGGGCCGTGTA
*
69324960 GCACACATGGCTAAGACACATGCTCGTGTCTTTGCTTGTGTGCTCAATTCTGAGCATGCTGTTTC
66 GCACACATGGCTAAGACACATGCTCGTGTCTTTGCTTGTGTGCTCAATTCTAAGCATGCTGTTTC
69325025 TCAAATTTAAGATA
131 TCAAATTTAAGATA
69325039 TA
1 TA
69325041 GAGGACACAC
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
144 144 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (144 bp):
TAATTTTCCAAAATTAAGTGCAGGTTTCACACAGCCAGACACACGCTCGTGTTCTGGGCCGTGTA
GCACACATGGCTAAGACACATGCTCGTGTCTTTGCTTGTGTGCTCAATTCTAAGCATGCTGTTTC
TCAAATTTAAGATA
Found at i:69332320 original size:16 final size:16
Alignment explanation
Indices: 69332299--69332329 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69332289 AAATATTATA
*
69332299 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
69332315 AATTAAATAATTTTC
1 AATTAAATAATTTTC
69332330 TCAACCTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:69334045 original size:22 final size:21
Alignment explanation
Indices: 69334003--69334042 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
69333993 TAATTTACAT
*
69334003 AAAAAGTATTAATACCTTTAC
1 AAAAAGTATCAATACCTTTAC
69334024 AAAAAGTATCAATACCTTT
1 AAAAAGTATCAATACCTTT
69334043 TACTAGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAAAGTATCAATACCTTTAC
Found at i:69351948 original size:51 final size:51
Alignment explanation
Indices: 69351859--69352033 Score: 156
Period size: 51 Copynumber: 3.4 Consensus size: 51
69351849 TAGGTCGCAT
* * * *** *
69351859 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACAT
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTCGATCACAA
* * *
69351910 TTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTGGGTCACAA
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTCGATCACAA
* * * * * *
69351961 GTGTGGTACCATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA-CTACAA
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAA-AAGATAGCTTCGATC-ACAA
* *
69352012 GGGTGGTACTATGTGCAGGCCA
1 GTGTGGTACTAAGTGCAGGCCA
69352034 TCGGGCATCC
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
50 3 0.03
51 98 0.97
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (51 bp):
GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTCGATCACAA
Found at i:69367946 original size:17 final size:17
Alignment explanation
Indices: 69367924--69367957 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
69367914 AAAAATTGTT
69367924 AATTAGCATAAAATTTA
1 AATTAGCATAAAATTTA
*
69367941 AATTAGTATAAAATTTA
1 AATTAGCATAAAATTTA
69367958 GTAATAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (17 bp):
AATTAGCATAAAATTTA
Found at i:69369079 original size:10 final size:9
Alignment explanation
Indices: 69369063--69369121 Score: 55
Period size: 10 Copynumber: 5.9 Consensus size: 9
69369053 TATACATTTG
69369063 AATTTTTAT
1 AATTTTTAT
69369072 ATATTTTTAT
1 A-ATTTTTAT
69369082 AATTTTTAAT
1 AATTTTT-AT
*
69369092 AATTGTTAAT
1 AATT-TTTAT
69369102 AAATTATTTTAT
1 -AA-T-TTTTAT
69369114 AATTTTTA
1 AATTTTTA
69369122 ATTTTTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
9 12 0.29
10 18 0.43
11 6 0.14
12 5 0.12
13 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (9 bp):
AATTTTTAT
Done.