Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 209 of 332
Found at i:69369287 original size:4 final size:4
Alignment explanation
Indices: 69369278--69369302 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
69369268 AATTCAAAAT
69369278 ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA A
69369303 ATGAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:69369421 original size:21 final size:21
Alignment explanation
Indices: 69369395--69369434 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69369385 TTTAATTATT
**
69369395 TAATTTAAATCAATTAAATAA
1 TAATTTAAAGAAATTAAATAA
69369416 TAATTTAAAGAAATTAAAT
1 TAATTTAAAGAAATTAAAT
69369435 TAATCTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TAATTTAAAGAAATTAAATAA
Found at i:69373385 original size:16 final size:16
Alignment explanation
Indices: 69373352--69373386 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
69373342 TCATTTGGTA
**
69373352 TTTGAATTTGACTTTT
1 TTTGAATTTGACACTT
69373368 TTTGAATTTGACACTT
1 TTTGAATTTGACACTT
69373384 TTT
1 TTT
69373387 CTAATGTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.09, G:0.11, T:0.60
Consensus pattern (16 bp):
TTTGAATTTGACACTT
Found at i:69375379 original size:498 final size:498
Alignment explanation
Indices: 69374442--69375935 Score: 2900
Period size: 498 Copynumber: 3.0 Consensus size: 498
69374432 TTTGTCGAAA
69374442 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAAGTG
1 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAAGTG
69374507 TAGAATTAGGTAAATTAGAAACGAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
66 TAGAATTAGGTAAATTAGAAACGAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
69374572 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
131 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
69374637 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
196 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
69374702 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
261 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
69374767 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
326 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
69374832 TCAGGCTCGATGTCGTTACCCATAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
391 TCAGGCTCGATGTCGTTACCCATAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
69374897 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
456 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
69374940 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAAGTG
1 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAAGTG
69375005 TAGAATTAGGTAAATTAGAAACGAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
66 TAGAATTAGGTAAATTAGAAACGAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
69375070 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
131 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
*
69375135 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAATTTAACCTAAC
196 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
69375200 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
261 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
*
69375265 ACCCTTTAATGTTAGGCTCGATGTCGCAACCCACAAGTTGATGTCACAACCAAACAATAACAATG
326 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
*
69375330 TTAGGCTCGATGTCGTTACCCATAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
391 TCAGGCTCGATGTCGTTACCCATAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
69375395 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
456 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
* *
69375438 TCCTTGAATTAATGAAGTAAAAGTGCTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAATTG
1 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAAGTG
*
69375503 TAGAATTAGGTAAATTAGAAACAAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
66 TAGAATTAGGTAAATTAGAAACGAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
69375568 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCT-A
131 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
*
69375632 AAACTTTTTACTGCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
196 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
69375697 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
261 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
*
69375762 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAAAAATAACAATG
326 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
*
69375827 TCAGGCTCGATGTCGTTACCCACAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
391 TCAGGCTCGATGTCGTTACCCATAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
69375892 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
456 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
69375935 T
1 T
69375936 TAGTCTTGCT
Statistics
Matches: 984, Mismatches: 12, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
497 299 0.30
498 685 0.70
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (498 bp):
TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAAGTG
TAGAATTAGGTAAATTAGAAACGAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
TCAGGCTCGATGTCGTTACCCATAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
Found at i:69377506 original size:46 final size:46
Alignment explanation
Indices: 69377453--69377635 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
69377443 TATATATACA
* * * *
69377453 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
69377499 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
69377545 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
69377591 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACTACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
69377636 ATACACTTCC
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:69377683 original size:47 final size:47
Alignment explanation
Indices: 69377609--69377893 Score: 412
Period size: 47 Copynumber: 6.1 Consensus size: 47
69377599 ACACATTTCG
* * * * *
69377609 CATTAGCCATTCGGCTTTA-CTACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATC-ACATATATGCA-TGTTCACATTCATCA
*
69377656 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
69377703 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
69377750 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
69377797 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
69377844 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
69377891 CAT
1 CAT
69377894 AAAATCCTAA
Statistics
Matches: 222, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 220 0.99
48 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:69377750 original size:25 final size:25
Alignment explanation
Indices: 69377721--69377798 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
69377711 ATTCGGCCTT
69377721 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
69377746 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
69377768 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
69377793 ATCACA
1 ATCACA
69377799 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:69377773 original size:22 final size:22
Alignment explanation
Indices: 69377699--69377773 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
69377689 GTTCACATTC
69377699 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
69377721 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
69377745 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
69377768 ATCACA
1 ATCACA
69377774 CATATGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:69383091 original size:19 final size:19
Alignment explanation
Indices: 69383067--69383106 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
69383057 TGTGTCATCA
69383067 TAAATTCATAGGCATAACT
1 TAAATTCATAGGCATAACT
**
69383086 TAAATTTGTAGGCATAACT
1 TAAATTCATAGGCATAACT
69383105 TA
1 TA
69383107 CACATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:69389862 original size:31 final size:31
Alignment explanation
Indices: 69389822--69389907 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
69389812 TCAATCTCAG
69389822 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
69389852 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
69389883 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
69389908 TGTAAATGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 47 0.92
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:69392639 original size:17 final size:18
Alignment explanation
Indices: 69392602--69392639 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
69392592 GATTGAGAGT
* *
69392602 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
69392620 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
69392637 GAA
1 GAA
69392640 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:69392652 original size:13 final size:12
Alignment explanation
Indices: 69392621--69392675 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
69392611 TGTGAAACAG
*
69392621 AAAAGAAATTGA
1 AAAAGAAGTTGA
69392633 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
69392645 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
69392657 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
69392669 AAAAGAA
1 AAAAGAA
69392676 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:69397342 original size:16 final size:16
Alignment explanation
Indices: 69397309--69397344 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
69397299 AATGTGTACT
*
69397309 TGTAACACCCCTTACC
1 TGTAACACCCCTCACC
*
69397325 TGTAACACCCCTCGCC
1 TGTAACACCCCTCACC
69397341 TGTA
1 TGTA
69397345 TCCAACTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.22, C:0.42, G:0.11, T:0.25
Consensus pattern (16 bp):
TGTAACACCCCTCACC
Found at i:69403334 original size:44 final size:45
Alignment explanation
Indices: 69403214--69403334 Score: 119
Period size: 44 Copynumber: 2.8 Consensus size: 45
69403204 CGATATCCAA
* * *
69403214 GCCTCTGTCCCAGACAGGGTCTTACACGA-AA--TCAGATACGAT
1 GCCTGTGTCCCAGACACGGTCTTACACGATAATTTCAAATACGAT
* **
69403256 GCC-GATGTCTCAGACTTGGTCTTACACG-TAAATTTCAAAT-CGAT
1 GCCTG-TGTCCCAGACACGGTCTTACACGAT-AATTTCAAATACGAT
*
69403300 GCCTGTGTCCCAGACACGATCTTACACGATAATTT
1 GCCTGTGTCCCAGACACGGTCTTACACGATAATTT
69403335 AGATCAATAC
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
42 23 0.37
43 2 0.03
44 31 0.49
45 7 0.11
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCTGTGTCCCAGACACGGTCTTACACGATAATTTCAAATACGAT
Found at i:69408348 original size:36 final size:36
Alignment explanation
Indices: 69408308--69408380 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
69408298 TCTTTCTAGC
*
69408308 ATCTCTAGATTCAAAATCAGCTTTTCTTTTCTCTTT
1 ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
69408344 ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
1 ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
69408380 A
1 A
69408381 CTTAATTCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.07, T:0.48
Consensus pattern (36 bp):
ATCTCTAGATTCAAAATCAGCTTTGCTTTTCTCTTT
Found at i:69424988 original size:12 final size:12
Alignment explanation
Indices: 69424968--69424998 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
69424958 CTCTAGTTTT
69424968 CACACGGCCTAG
1 CACACGGCCTAG
*
69424980 CACATGGCCTAG
1 CACACGGCCTAG
69424992 CACACGG
1 CACACGG
69424999 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.26, C:0.39, G:0.26, T:0.10
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:69429685 original size:16 final size:17
Alignment explanation
Indices: 69429664--69429696 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
69429654 TCACTATTTA
69429664 CACTCA-CAATGCTTTC
1 CACTCATCAATGCTTTC
69429680 CACTCATTCAATGCTTT
1 CACTCA-TCAATGCTTT
69429697 TATTCACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (17 bp):
CACTCATCAATGCTTTC
Found at i:69429715 original size:19 final size:19
Alignment explanation
Indices: 69429691--69429743 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
69429681 ACTCATTCAA
69429691 TGCTTTTATTCACTCA-CT
1 TGCTTTTATTCACTCACCT
*
69429709 GTGCTTTTA-TCCCTCACCT
1 -TGCTTTTATTCACTCACCT
69429728 TGCTTTTATTCACTCA
1 TGCTTTTATTCACTCA
69429744 ATTTTTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.15, C:0.30, G:0.08, T:0.47
Consensus pattern (19 bp):
TGCTTTTATTCACTCACCT
Found at i:69433099 original size:48 final size:48
Alignment explanation
Indices: 69433028--69433348 Score: 258
Period size: 48 Copynumber: 6.7 Consensus size: 48
69433018 AGGGCAAATT
* *
69433028 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * * * *
69433076 GCCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCGT-CCTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC-GAG
* * * * * *
69433124 GTCGATGCCATGTCCCAAACATAGTCTTACATTGGTTCACATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAG
* * * *
69433172 GTCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
69433220 ACTGATGCCATGTCCTAGACATGATCTTACACTGGCTCTTACA-A-C-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ACATATCGA-G
* * * *
69433268 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCGAG
** * *
69433316 GTTGACGCCATGTCCTAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
69433349 AGCGCACACA
Statistics
Matches: 210, Mismatches: 52, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
46 2 0.01
47 4 0.02
48 200 0.95
49 1 0.00
50 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
Found at i:69433295 original size:144 final size:143
Alignment explanation
Indices: 69433032--69433356 Score: 411
Period size: 144 Copynumber: 2.3 Consensus size: 143
69433022 CAAATTGCCG
* * * **
69433032 ATGCCATGTCCCAGACATGGTCTTACAATGGCTCACATGTCGAGGCCGATGCCATGTCTCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACCGATGCCATGTCTCAGACA
* * * * * *
69433097 TGGTCTTACACTAGCTCTCGTCCTAATGTCGATGCCATGTCCCAAACATAGTCTTACATTGGTTC
66 TGATCTTACACTAGCTCTC-TACAAATGCCGATGCCATGTCCCAAACATAGTCTTACACTGGCTC
69433162 ACATAATGTGGTCA
130 ACATAATGTGGTCA
*
69433176 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACTGATGCCATGTC-CTAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACCGATGCCATGTCTC-AGAC
* * *
69433240 ATGATCTTACACTGGCTCT-TACAACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGC
65 ATGATCTTACACTAGCTCTCTACAA-A-TGCCGATGCCATGTCCCAAACATAGTCTTACACTGGC
* **
69433304 TCTCATAATGTGGTTG
128 TCACATAATGTGGTCA
* * *
69433320 ACGCCATGTCCTAGACATGGTCTTACACTAGCGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
69433357 CATCACCCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
142 3 0.02
143 2 0.01
144 152 0.97
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (143 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGACACCGATGCCATGTCTCAGACA
TGATCTTACACTAGCTCTCTACAAATGCCGATGCCATGTCCCAAACATAGTCTTACACTGGCTCA
CATAATGTGGTCA
Found at i:69435656 original size:30 final size:30
Alignment explanation
Indices: 69435622--69435713 Score: 112
Period size: 30 Copynumber: 3.1 Consensus size: 30
69435612 TCGCTTGGCG
* * *
69435622 GTGTGCCACACATGGTCACACCACACGTTC
1 GTGTGCCACACACGGTCATACCACACGTCC
* * *
69435652 GTGTGCCACATACAGTCATACCACATGTCC
1 GTGTGCCACACACGGTCATACCACACGTCC
* *
69435682 TTGTGCCACACACGGTCATACCACACATCC
1 GTGTGCCACACACGGTCATACCACACGTCC
69435712 GT
1 GT
69435714 CCATGTGTCT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.25, C:0.36, G:0.17, T:0.22
Consensus pattern (30 bp):
GTGTGCCACACACGGTCATACCACACGTCC
Found at i:69437828 original size:27 final size:27
Alignment explanation
Indices: 69437798--69437965 Score: 214
Period size: 27 Copynumber: 6.3 Consensus size: 27
69437788 CCCTAAAATA
*
69437798 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * * *
69437825 GGTAAAATCACTGTAATGCCCTTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
69437852 GGTAAAATGACCGTAATA-CCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
69437878 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
69437905 GGTAAAATGACCGTAATGA-CCCTGTAG
1 GGTAAAATGACCGTAAT-ACCCCTGTAG
* * *
69437932 GGTAAAATGACCATAATAACCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
69437959 GGTAAAA
1 GGTAAAA
69437966 GAACGATTAT
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 24 0.20
27 97 0.80
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:69437933 original size:80 final size:81
Alignment explanation
Indices: 69437798--69437965 Score: 259
Period size: 80 Copynumber: 2.1 Consensus size: 81
69437788 CCCTAAAATA
* *
69437798 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACTGTAATGCCCTTTTAGGGTAAAATGAC
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACCGTAATGCCCTTGTAGGGTAAAATGAC
*
69437863 CGTAAT-ACCCTATAG
66 CATAATAACCCTATAG
*
69437878 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATGACCC-TGTAGGGTAAAATGA
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACCGTAATG-CCCTTGTAGGGTAAAATGA
* *
69437942 CCATAATAACCCTGTAT
65 CCATAATAACCCTATAG
69437959 GGTAAAA
1 GGTAAAA
69437966 GAACGATTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
80 63 0.79
81 17 0.21
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (81 bp):
GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATCACCGTAATGCCCTTGTAGGGTAAAATGAC
CATAATAACCCTATAG
Found at i:69438368 original size:33 final size:33
Alignment explanation
Indices: 69438315--69438390 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
69438305 TTTGCATTAC
* * *
69438315 ACTGCACTGTTACTGTATAGGACTAAGGCCCAG
1 ACTGTACTGATACTGAATAGGACTAAGGCCCAG
* *
69438348 ACTGTACTGATACTGAATAGGGCTCAGGCCCAG
1 ACTGTACTGATACTGAATAGGACTAAGGCCCAG
69438381 ACTGTTACTG
1 ACTG-TACTG
69438391 CATGCACTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 32 0.86
34 5 0.14
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (33 bp):
ACTGTACTGATACTGAATAGGACTAAGGCCCAG
Found at i:69446422 original size:42 final size:42
Alignment explanation
Indices: 69446374--69446485 Score: 122
Period size: 42 Copynumber: 2.6 Consensus size: 42
69446364 GTGTTCTAGT
69446374 GTAAGACCACGTCTGGGATGCTGGCATCGATATGTGATTTGC-
1 GTAAGACCACGTCTGGGATGCTGGCATCGATATGTGA-TTGCA
* *
69446416 GTAAGACC-CTGTCTGGAATAGC-GGTATCGATATGTGATTGCA
1 GTAAGACCAC-GTCTGGGAT-GCTGGCATCGATATGTGATTGCA
* * *
69446458 TGTAAGACTACGTCTGGGACGTTGGCAT
1 -GTAAGACCACGTCTGGGATGCTGGCAT
69446486 TGTACGATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
41 5 0.09
42 31 0.54
43 20 0.35
44 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (42 bp):
GTAAGACCACGTCTGGGATGCTGGCATCGATATGTGATTGCA
Found at i:69451681 original size:40 final size:40
Alignment explanation
Indices: 69451626--69451843 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
69451616 CGGATGATAA
*
69451626 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
69451666 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
69451706 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
69451746 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
69451786 TCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
* *
69451826 TC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69451844 TACTTGGTTG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 151 0.90
41 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:69453507 original size:70 final size:70
Alignment explanation
Indices: 69453429--69453623 Score: 356
Period size: 70 Copynumber: 2.8 Consensus size: 70
69453419 TAGTTTATTA
* *
69453429 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
69453494 CTTAG
66 CTTAG
69453499 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
69453564 CTTAG
66 CTTAG
*
69453569 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAA
69453624 ATCATGGTGT
Statistics
Matches: 122, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
69 29 0.24
70 93 0.76
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
CTTAG
Found at i:69455172 original size:47 final size:47
Alignment explanation
Indices: 69455095--69455515 Score: 608
Period size: 47 Copynumber: 9.0 Consensus size: 47
69455085 TTAGGATTTT
** *
69455095 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
69455142 ATTTGATAAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
69455189 ATGTGGTGAGTATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
69455236 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
69455283 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
69455330 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
69455377 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
69455424 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
69455471 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
69455516 TAGTGTGAAA
Statistics
Matches: 331, Mismatches: 43, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 331 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:69455291 original size:25 final size:25
Alignment explanation
Indices: 69455216--69455291 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
69455206 ATGTATATAT
69455216 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
69455241 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
69455263 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
69455288 GTGA
1 GTGA
69455292 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:69455479 original size:25 final size:25
Alignment explanation
Indices: 69455405--69455479 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 25
69455395 TGCATATATA
*
69455405 TGATAAGGCCGAATGGCCAATGTGA
1 TGATAAGGCCGAATGGCCAATGTGG
* * *
69455430 TGA-ATGTG-AGCAT-G-CATATGT-G
1 TGATAAG-GCCGAATGGCCA-ATGTGG
69455452 TGATAAGGCCGAATGGCCAATGTGG
1 TGATAAGGCCGAATGGCCAATGTGG
69455477 TGA
1 TGA
69455480 ATATGAACAT
Statistics
Matches: 36, Mismatches: 7, Indels: 14
0.63 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.24
Consensus pattern (25 bp):
TGATAAGGCCGAATGGCCAATGTGG
Found at i:69455728 original size:37 final size:37
Alignment explanation
Indices: 69455678--69455826 Score: 226
Period size: 37 Copynumber: 4.0 Consensus size: 37
69455668 GGAAATATAT
* * * *
69455678 TCCGGGTGAGACCCGATGACTACATGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
69455715 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
69455752 CCCGGGTAAGACCCGATGACTACGTGCGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
69455789 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
69455826 T
1 T
69455827 TCGAGCTAAA
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:69472556 original size:18 final size:18
Alignment explanation
Indices: 69472533--69472568 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69472523 TTTAGCATGA
69472533 AATTCTCGTTCGTGGCTT
1 AATTCTCGTTCGTGGCTT
* *
69472551 AATTCTTGTTTGTGGCTT
1 AATTCTCGTTCGTGGCTT
69472569 TCTTGTTCGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (18 bp):
AATTCTCGTTCGTGGCTT
Found at i:69473001 original size:13 final size:13
Alignment explanation
Indices: 69472983--69473007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69472973 CCAAGCACAT
69472983 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
69472996 GCCCGTGTCCCT
1 GCCCGTGTCCCT
69473008 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:69480233 original size:43 final size:41
Alignment explanation
Indices: 69480186--69480265 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 41
69480176 ATAGGGTTTT
* *
69480186 ACACAAAATCACAATACGATGCCAATGTCTCAGACATGGCCTG
1 ACACAAAAT--CAATACAATGCCAATGTCCCAGACATGGCCTG
*
69480229 ACACATAATCAATACAATGCCAATGTCCCAGACATGG
1 ACACAAAATCAATACAATGCCAATGTCCCAGACATGG
69480266 TCTTACATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 26 0.76
43 8 0.24
ACGTcount: A:0.39, C:0.28, G:0.15, T:0.19
Consensus pattern (41 bp):
ACACAAAATCAATACAATGCCAATGTCCCAGACATGGCCTG
Found at i:69484904 original size:48 final size:48
Alignment explanation
Indices: 69484859--69484965 Score: 151
Period size: 48 Copynumber: 2.2 Consensus size: 48
69484849 TGTGATCCTG
*
69484859 TGTAAGACCATGTTTGGGACATGACATTGGCATCGATCTACGATCCCA
1 TGTAAGACCATGTCTGGGACATGACATTGGCATCGATCTACGATCCCA
* * * ** *
69484907 TGTAAGACCATGTCTGGGACTTGGCATTGGCATCGATATGTGATTCCA
1 TGTAAGACCATGTCTGGGACATGACATTGGCATCGATCTACGATCCCA
69484955 TGTAAGACCAT
1 TGTAAGACCAT
69484966 TTTCGGGATA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGACATTGGCATCGATCTACGATCCCA
Found at i:69486387 original size:11 final size:11
Alignment explanation
Indices: 69486366--69486398 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
69486356 TTCATGAAAA
69486366 TTTTTCT-AAG
1 TTTTTCTAAAG
69486376 TTTTTCTAAAG
1 TTTTTCTAAAG
69486387 -TTTTCTAAAG
1 TTTTTCTAAAG
69486397 TT
1 TT
69486399 CTTGGATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 17 0.81
11 4 0.19
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.58
Consensus pattern (11 bp):
TTTTTCTAAAG
Found at i:69488138 original size:43 final size:43
Alignment explanation
Indices: 69488075--69488293 Score: 282
Period size: 43 Copynumber: 5.1 Consensus size: 43
69488065 TCTCAAACGT
* * *
69488075 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAG
1 GGTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAG
* * * * *
69488118 GATCTTACAC-TAAATCAAATA-CGAAG-CAATGTCCCAGACAT
1 GGTCTTACACGT-AATCACATATCGATGCCACTGTCCCAGACAG
* * * *
69488159 AGTCTTACATGTAATCACATACCGATGCCACTGTCCTAGACAG
1 GGTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAG
*
69488202 GGTCTTACACGTAATCACATATCAATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAG
*
69488245 GGTCTTACACGTAATCACATATTGATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAG
69488288 GGTCTT
1 GGTCTT
69488294 GTGCATAAAT
Statistics
Matches: 151, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
41 27 0.18
42 10 0.07
43 114 0.75
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCGATGCCACTGTCCCAGACAG
Found at i:69488262 original size:86 final size:84
Alignment explanation
Indices: 69488075--69488293 Score: 289
Period size: 84 Copynumber: 2.6 Consensus size: 84
69488065 TCTCAAACGT
* * *
69488075 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGATCTTACACTAAATCAAATAC
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTAAATCAAATAC
*
69488140 GAAGCAATGTCCCAGACAT
66 GAAGCAATGTCCCAGACAG
* * * *
69488159 AGTCTTACATGTAATCACATACCGATGCCACTGTCCTAGACAGGGTCTTACACGT-AATCACATA
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACAC-TAAATCAAATA
*
69488223 TC-AATGCCACTGTCCCAGACAG
65 -CGAA-G-CAATGTCCCAGACAG
* *
69488245 GGTCTTACACGTAATCACATATTGATGCCACTGTCCCAGACAGGGTCTT
1 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTT
69488294 GTGCATAAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
84 57 0.49
85 3 0.03
86 57 0.49
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (84 bp):
GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACTAAATCAAATAC
GAAGCAATGTCCCAGACAG
Found at i:69494546 original size:17 final size:16
Alignment explanation
Indices: 69494527--69494615 Score: 62
Period size: 15 Copynumber: 5.8 Consensus size: 16
69494517 GTAATATATA
69494527 AAATAATATATATAAT
1 AAATAATATATATAAT
* **
69494543 -AA-AATGTAGGTAAT
1 AAATAATATATATAAT
69494557 --ATAATATATAATAAT
1 AAATAATATAT-ATAAT
*
69494572 ATATAATAT-TATAAT
1 AAATAATATATATAAT
* * *
69494587 AAATAATATACAAAGAA
1 AAATAATATATATA-AT
69494604 AAATAATATATA
1 AAATAATATATA
69494616 CACTTTTATA
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
13 1 0.02
14 14 0.25
15 19 0.34
16 3 0.05
17 19 0.34
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (16 bp):
AAATAATATATATAAT
Found at i:69494591 original size:22 final size:22
Alignment explanation
Indices: 69494461--69494596 Score: 69
Period size: 22 Copynumber: 6.4 Consensus size: 22
69494451 ATGGTAAAAT
* * *
69494461 ATAACATATAATAAAATTTATAA
1 ATAATATATAATATAATATAT-A
69494484 ATGAA-ATAT-ATGATAATATA-A
1 AT-AATATATAAT-ATAATATATA
* *
69494505 ACAATATGATAA-GTAATATATA
1 ATAATAT-ATAATATAATATATA
69494527 A-AATA-AT-ATAT-ATA-ATA
1 ATAATATATAATATAATATATA
*
69494544 A-AATGTAGGTAATATAATATATA
1 ATAATATA--TAATATAATATATA
*
69494567 ATAATATATAATATTATA-ATAA
1 ATAATATATAATATAATATAT-A
69494589 ATAATATA
1 ATAATATA
69494597 CAAAGAAAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 31
0.70 0.06 0.24
Matches are distributed among these distances:
17 7 0.08
18 5 0.06
19 3 0.03
20 3 0.03
21 21 0.23
22 27 0.30
23 17 0.19
24 7 0.08
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.35
Consensus pattern (22 bp):
ATAATATATAATATAATATATA
Found at i:69496598 original size:130 final size:130
Alignment explanation
Indices: 69496384--69496632 Score: 385
Period size: 130 Copynumber: 1.9 Consensus size: 130
69496374 GCTTCTTTGC
*
69496384 TTTGTTCCCTGACAATTCAGAGATGCCAAATCATCTTAGATTCACTTCAGCATAAACACGTTAAA
1 TTTGTTCCCTGACAATTCAGAGATGCCAAATCATCTTAGATTCACTTCAGCATAAACACGTGAAA
**
69496449 CCCAAATCTACTATGTCTTCGATCCGTTCCTTGTAAACGCAAGGATGCCAAATCTGTTTCTTCAA
66 CCCAAATCTACTATGTCTTCGATCCACTCCTTGTAAACGCAAGGATGCCAAATCTGTTTCTTCAA
* * * *
69496514 TTTGTTCTCTGACAATAT-AGGGATGCCAAATCATCTTAGA-TCTGCTTCAGCGTAAACACGTGA
1 TTTGTTCCCTGACAAT-TCAGAGATGCCAAATCATCTTAGATTC-ACTTCAGCATAAACACGTGA
* *
69496577 AAGCCAAATCTACTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAATC
64 AACCCAAATCTACTATGTCTTCGATCCACTCCTTGTAAACGCAAGGATGCCAAATC
69496633 ATCTTGGATC
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
129 2 0.02
130 105 0.97
131 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (130 bp):
TTTGTTCCCTGACAATTCAGAGATGCCAAATCATCTTAGATTCACTTCAGCATAAACACGTGAAA
CCCAAATCTACTATGTCTTCGATCCACTCCTTGTAAACGCAAGGATGCCAAATCTGTTTCTTCAA
Found at i:69509295 original size:34 final size:34
Alignment explanation
Indices: 69509252--69509317 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
69509242 TCGGCCTCCG
*
69509252 GCCACTGAGCAGTACGTGCCCACGCGCCACACAC
1 GCCACTGAGCAGCACGTGCCCACGCGCCACACAC
*
69509286 GCCACTGAGCAGCACGTGCCCACGTGCCACAC
1 GCCACTGAGCAGCACGTGCCCACGCGCCACAC
69509318 GCGCAACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.23, C:0.44, G:0.24, T:0.09
Consensus pattern (34 bp):
GCCACTGAGCAGCACGTGCCCACGCGCCACACAC
Found at i:69510731 original size:54 final size:54
Alignment explanation
Indices: 69510636--69510791 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 54
69510626 CGTGGTATCA
* * * *
69510636 TTGCCTTAT-GAGCTCACCAATGCCATGCCTTGGCATAGTCTTACATG-GGACC
1 TTGCCTTATAGAACTCATCAATGCCATGTCTTGGCATGGTCTTACATGAGGACC
* * **
69510688 TTTTCCTTA-AGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTACC
1 -TTGCCTTATAG-AACTCATCAATGCCATGTCTTGGCATGGTCTTACATGAGGACC
* *
69510743 TTGCCTTATAGAACTTATCAATGCCATGTCTTGGCATGATCTTACATGA
1 TTGCCTTATAGAACTCATCAATGCCATGTCTTGGCATGGTCTTACATGA
69510792 TATCCTTATC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.09
54 74 0.85
55 5 0.06
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
TTGCCTTATAGAACTCATCAATGCCATGTCTTGGCATGGTCTTACATGAGGACC
Found at i:69510843 original size:36 final size:36
Alignment explanation
Indices: 69510803--69510876 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
69510793 ATCCTTATCT
* *
69510803 TACCAAATGCCATGTTCCAAACGTGGTCTTATATGG
1 TACCAAATGCCATGTTCCAAACATGGTCTTACATGG
69510839 TACCAAATGCCATGTTCCAAACATGGTCTTACATGG
1 TACCAAATGCCATGTTCCAAACATGGTCTTACATGG
69510875 TA
1 TA
69510877 TCCTTGTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (36 bp):
TACCAAATGCCATGTTCCAAACATGGTCTTACATGG
Found at i:69517752 original size:28 final size:29
Alignment explanation
Indices: 69517641--69517744 Score: 124
Period size: 29 Copynumber: 3.7 Consensus size: 29
69517631 GTGAGCATGA
* *
69517641 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
69517669 ATATAAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
69517698 ATAT-ACAAATGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
69517727 ATATGAATGTGA-TTGGGC
1 ATATGAATGTGATTTGGGC
69517745 TTAGTGGGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
28 18 0.28
29 45 0.70
30 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:69520673 original size:16 final size:16
Alignment explanation
Indices: 69520652--69520683 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69520642 GTTGTAACGC
69520652 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
*
69520668 CCCAAAAATCTTGAAA
1 CCCAAAAATCTCGAAA
69520684 TCCCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCTCGAAA
Found at i:69521971 original size:8 final size:8
Alignment explanation
Indices: 69521946--69521988 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
69521936 ATGTATCGAC
69521946 AAAAGCC-
1 AAAAGCCG
69521953 AAAATGCCG
1 AAAA-GCCG
69521962 AAAAGCCG
1 AAAAGCCG
* *
69521970 AAATGCCA
1 AAAAGCCG
69521978 AAAAGCCG
1 AAAAGCCG
69521986 AAA
1 AAA
69521989 GTTTGGCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 4 0.13
8 22 0.73
9 4 0.13
ACGTcount: A:0.53, C:0.23, G:0.19, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:69521985 original size:16 final size:16
Alignment explanation
Indices: 69521946--69521988 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
69521936 ATGTATCGAC
* *
69521946 AAAAGCCAAAATGCCG
1 AAAAGCCGAAATGCCA
69521962 AAAAGCCGAAATGCCA
1 AAAAGCCGAAATGCCA
69521978 AAAAGCCGAAA
1 AAAAGCCGAAA
69521989 GTTTGGCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.53, C:0.23, G:0.19, T:0.05
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:69522245 original size:29 final size:29
Alignment explanation
Indices: 69522212--69522313 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
69522202 TGAATGTGAC
* * *
69522212 TGGGCCTAACGGACCATATAAATTTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* **
69522241 TGGGCCTAATGGGCCATATAGAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
*
69522270 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
69522298 TGGGCTTAGTGGGCCA
1 TGGGCCTAATGGGCCA
69522314 GATATAGGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 15 0.24
29 47 0.76
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:69525210 original size:54 final size:54
Alignment explanation
Indices: 69524894--69525215 Score: 376
Period size: 54 Copynumber: 6.0 Consensus size: 54
69524884 TTTCCTTTTT
* * * * * ** *
69524894 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTCTTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * ** * *
69524947 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * * * *
69525001 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATAATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* *
69525056 GAACTTATCAATGCCATTCCTTGGCATGGTCTTACATGATATCCTTATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * *
69525110 TAACTTATCAATGCCATGCCTTGGAATGGTCTTACATGATATCCTTATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * *
69525164 GAACTTATCAATGCCATACCTTGGCATGGCCTTACATGATATCCTTATCTTA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTA
69525216 CCAAACGCCG
Statistics
Matches: 235, Mismatches: 32, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
53 44 0.19
54 145 0.62
55 46 0.20
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
Found at i:69525403 original size:47 final size:47
Alignment explanation
Indices: 69525188--69525396 Score: 328
Period size: 47 Copynumber: 4.4 Consensus size: 47
69525178 CATACCTTGG
* * * *
69525188 CATGGCCTTACATGATATCCTTATCTTACCAAACGCCGTGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
69525235 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
69525282 CATGGTCTTACATGGTATCCATGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
69525329 CATGGTTTTACATGGTATCATTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
69525376 CATGGTCTTACATGGTATCCT
1 CATGGTCTTACATGGTATCCT
69525397 CTTCTTAGTG
Statistics
Matches: 148, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 148 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:69525509 original size:45 final size:44
Alignment explanation
Indices: 69525457--69525617 Score: 180
Period size: 45 Copynumber: 3.5 Consensus size: 44
69525447 ATCAATGCCG
*
69525457 ATGCCATGTCTTGACATGGTCTCACACGGGATCCTTGCCTTACA
1 ATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCTTACA
* * ** *
69525501 GATGCCATGTCTTGACATGGTCTTACA-TGGAGTCCTTAATCAATGCTA
1 -ATGCCATGTCTTGACATGGTCTTACACGGGA-TCCTT--GCCTTAC-A
*
69525549 ATTCCATGTCTTGACATGGTCTTACACGGGGATCCTTGCCTTACCA
1 ATGCCATGTCTTGACATGGTCTTACAC-GGGATCCTTGCCTTA-CA
*
69525595 ATGCCATGTCTTGACATCGTCTT
1 ATGCCATGTCTTGACATGGTCTT
69525618 GCATGGTATC
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
44 3 0.03
45 30 0.32
46 24 0.25
47 29 0.31
48 6 0.06
49 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (44 bp):
ATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCTTACA
Found at i:69525568 original size:47 final size:46
Alignment explanation
Indices: 69525428--69525574 Score: 156
Period size: 47 Copynumber: 3.2 Consensus size: 46
69525418 TCTTGATGTA
* *
69525428 GTCTTACATGGAGTACTTAATCAATGCCGATGCCATGTCTTGACATG
1 GTCTTACATGGAGTCCTTAATCAATG-CAATGCCATGTCTTGACATG
* * * ** *
69525475 GTCTCACACGG-GATCCTT--GCCTTACAGATGCCATGTCTTGACATG
1 GTCTTACATGGAG-TCCTTAATCAATGCA-ATGCCATGTCTTGACATG
*
69525520 GTCTTACATGGAGTCCTTAATCAATGCTAATTCCATGTCTTGACATG
1 GTCTTACATGGAGTCCTTAATCAATGC-AATGCCATGTCTTGACATG
69525567 GTCTTACA
1 GTCTTACA
69525575 CGGGGATCCT
Statistics
Matches: 79, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
44 1 0.01
45 34 0.43
46 2 0.03
47 41 0.52
48 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (46 bp):
GTCTTACATGGAGTCCTTAATCAATGCAATGCCATGTCTTGACATG
Found at i:69525630 original size:93 final size:92
Alignment explanation
Indices: 69525428--69525632 Score: 306
Period size: 92 Copynumber: 2.2 Consensus size: 92
69525418 TCTTGATGTA
* *
69525428 GTCTTACATGGAGTACTTAATCAATGCCGATGCCATGTCTTGACATGGTCTCACACGGGATCCTT
1 GTCTTACATGGAGTCCTTAATCAATGCCAATGCCATGTCTTGACATGGTCTCACACGGGATCCTT
*
69525493 GCCTTACAGATGCCATGTCTTGACATG
66 GCCTTACAGATGCCATGTCTTGACATC
* * *
69525520 GTCTTACATGGAGTCCTTAATCAATGCTAATTCCATGTCTTGACATGGTCTTACACGGGGATCCT
1 GTCTTACATGGAGTCCTTAATCAATGCCAATGCCATGTCTTGACATGGTCTCACAC-GGGATCCT
69525585 TGCCTTACCA-ATGCCATGTCTTGACATC
65 TGCCTTA-CAGATGCCATGTCTTGACATC
*
69525613 GTCTTGCATGGTA-TCCTTAA
1 GTCTTACATGG-AGTCCTTAA
69525633 CCTTCAATTC
Statistics
Matches: 103, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
92 51 0.50
93 49 0.48
94 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (92 bp):
GTCTTACATGGAGTCCTTAATCAATGCCAATGCCATGTCTTGACATGGTCTCACACGGGATCCTT
GCCTTACAGATGCCATGTCTTGACATC
Found at i:69525797 original size:12 final size:12
Alignment explanation
Indices: 69525780--69525806 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
69525770 CGCATAACTC
69525780 AATAATAACAAT
1 AATAATAACAAT
69525792 AATAATAACAAT
1 AATAATAACAAT
69525804 AAT
1 AAT
69525807 TGCATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (12 bp):
AATAATAACAAT
Found at i:69527322 original size:32 final size:33
Alignment explanation
Indices: 69527272--69527339 Score: 120
Period size: 32 Copynumber: 2.1 Consensus size: 33
69527262 ATACCTACTG
69527272 ATAAGTAACTGACCTTATTTTATCATTAACCTC
1 ATAAGTAACTGACCTTATTTTATCATTAACCTC
*
69527305 ATAA-TAATTGACCTTATTTTATCATTAACCTC
1 ATAAGTAACTGACCTTATTTTATCATTAACCTC
69527337 ATA
1 ATA
69527340 CTCTCTAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.41
Consensus pattern (33 bp):
ATAAGTAACTGACCTTATTTTATCATTAACCTC
Found at i:69532108 original size:54 final size:54
Alignment explanation
Indices: 69531912--69532232 Score: 333
Period size: 53 Copynumber: 6.0 Consensus size: 54
69531902 TTTCCTTTTT
* * * * * * *
69531912 GAACTTACCATTGCCTTGTCTTGACATGGTCTTACGTGGTATCCTTACCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * ** *
69531965 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTACCTTATA
* * * * * * * *
69532019 GTAACTCATTAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTAATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
*
69532074 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* ** * *
69532128 AAACTTATCAATGCCATGCCTTGG-AAAGCCTTACATGATATCCTTATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * *
69532181 GAACTTATCAATCCCATGCCTTGGCATGGTTTTATATGATATCCTTATCTTA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTA
69532233 CCAAATGCCA
Statistics
Matches: 226, Mismatches: 37, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
52 2 0.01
53 90 0.40
54 90 0.40
55 43 0.19
56 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
Found at i:69532181 original size:162 final size:160
Alignment explanation
Indices: 69531912--69532220 Score: 352
Period size: 162 Copynumber: 1.9 Consensus size: 160
69531902 TTTCCTTTTT
* * * * * *
69531912 GAACTTACCATTGCCTTGTCTTGACATGGTCTTACGTGGTATCCTTACCTTATGAACTCACCAAT
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAAACTCACCAAT
** * * * * *
69531977 GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATTAATGCCATGTCTT
66 GCCATGCCTTGGCAAAGCCTTACATGAGACCTTT-CCTTATAG-AACTCATCAATCCCATGCCTT
69532042 GACATGGTCTTACATGATTTTCTTGCCTAATA
129 GACATGGTCTTACATGATTTTCTTGCCTAATA
* * * * *
69532074 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTATAAAACTTATCAA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTAT-AAACTCACCAA
* *
69532139 TGCCATGCCTTGG-AAAGCCTTACATGATATCCTTAT-CTTATAGAACTTATCAATCCCATGCCT
65 TGCCATGCCTTGGCAAAGCCTTACATGAGA-CCTT-TCCTTATAGAACTCATCAATCCCATGCCT
* * *
69532202 TGGCATGGTTTTATATGAT
128 TGACATGGTCTTACATGAT
69532221 ATCCTTATCT
Statistics
Matches: 121, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
161 32 0.26
162 63 0.52
163 25 0.21
164 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (160 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATAAACTCACCAAT
GCCATGCCTTGGCAAAGCCTTACATGAGACCTTTCCTTATAGAACTCATCAATCCCATGCCTTGA
CATGGTCTTACATGATTTTCTTGCCTAATA
Found at i:69532204 original size:107 final size:109
Alignment explanation
Indices: 69531931--69532232 Score: 337
Period size: 107 Copynumber: 2.8 Consensus size: 109
69531921 ATTGCCTTGT
* * * * * *
69531931 CTTGACATGGTCTTACGTGGTATCCTTACCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGT
1 CTTGACATAGCCTTACATGATATCCTTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGT
** * * *
69531995 CTTACATGGGA-CCTT-TGCCTTATAGTAACTCATTAATGCCATGT
66 CTTACATGATATCCTTAT--CTTATAGAAACTCATCAATGCCATGC
* * * * * *
69532039 CTTGACATGGTCTTACATGATTTTCTTGCCTAATAGAACTTATCAATGCCATGCCTTGGCATGGT
1 CTTGACATAGCCTTACATGATATCCTTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGT
*
69532104 CTTACATGATATCCTTATCTTATA-AAACTTATCAATGCCATGC
66 CTTACATGATATCCTTATCTTATAGAAACTCATCAATGCCATGC
* *
69532147 CTTGGA-A-AGCCTTACATGATATCCTTATCTTATAGAACTTATCAATCCCATGCCTTGGCATGG
1 CTT-GACATAGCCTTACATGATATCCTTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGG
* *
69532210 TTTTATATGATATCCTTATCTTA
65 TCTTACATGATATCCTTATCTTA
69532233 CCAAATGCCA
Statistics
Matches: 166, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
107 69 0.42
108 47 0.28
109 45 0.27
110 4 0.02
111 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (109 bp):
CTTGACATAGCCTTACATGATATCCTTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGT
CTTACATGATATCCTTATCTTATAGAAACTCATCAATGCCATGC
Found at i:69532271 original size:47 final size:47
Alignment explanation
Indices: 69532220--69532326 Score: 178
Period size: 47 Copynumber: 2.3 Consensus size: 47
69532210 TTTTATATGA
*
69532220 TATCCTTATCTTACCAAATGCCATGTTCCAAACATAGTCTTACATGG
1 TATCCTTGTCTTACCAAATGCCATGTTCCAAACATAGTCTTACATGG
* * *
69532267 TATCCTTGTTTTACCAAATGCCATGTTCCAAACATGGTCTTGCATGG
1 TATCCTTGTCTTACCAAATGCCATGTTCCAAACATAGTCTTACATGG
69532314 TATCCTTGTCTTA
1 TATCCTTGTCTTA
69532327 GTGCCAATGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
TATCCTTGTCTTACCAAATGCCATGTTCCAAACATAGTCTTACATGG
Found at i:69532440 original size:45 final size:44
Alignment explanation
Indices: 69532380--69532494 Score: 203
Period size: 44 Copynumber: 2.6 Consensus size: 44
69532370 ATCAATGCCG
*
69532380 ATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCTTTACCA
1 ATGCCATGTCTTGACATGGTCTTACA-GGGATCCTTGCCTTACCA
*
69532425 ATGCCATGTCTTGACATGGTCTTACATGGATCCTTGCCTTACCA
1 ATGCCATGTCTTGACATGGTCTTACAGGGATCCTTGCCTTACCA
69532469 ATGCCATGTCTTGACATGGTCTTACA
1 ATGCCATGTCTTGACATGGTCTTACA
69532495 TGGTATCTTT
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
44 42 0.62
45 26 0.38
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (44 bp):
ATGCCATGTCTTGACATGGTCTTACAGGGATCCTTGCCTTACCA
Found at i:69532471 original size:44 final size:44
Alignment explanation
Indices: 69532251--69532497 Score: 224
Period size: 47 Copynumber: 5.4 Consensus size: 44
69532241 CATGTTCCAA
* ** ***
69532251 ACATAGTCTTACATGGTATCCTTGTTTTACCAAATGCCATGTTCCAA
1 ACATGGTCTTACATGG-ATCCTTGCCTTACC-AATGCCATG-TCTTG
* * **
69532298 ACATGGTCTTGCATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTG
1 ACATGGTCTTACATGG-ATCCTTGCCTTA---CCAATGCCATGTCTTG
** * ** * *
69532346 ATGTGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGA-TCCTT--GCCTTACCAATGCCATGTCTTG
* *
69532393 ACATGGTCTTACACGGGATCCTTGCTTTACCAATGCCATGTCTTG
1 ACATGGTCTTACA-TGGATCCTTGCCTTACCAATGCCATGTCTTG
69532438 ACATGGTCTTACATGGATCCTTGCCTTACCAATGCCATGTCTTG
1 ACATGGTCTTACATGGATCCTTGCCTTACCAATGCCATGTCTTG
69532482 ACATGGTCTTACATGG
1 ACATGGTCTTACATGG
69532498 TATCTTTAAC
Statistics
Matches: 164, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
44 45 0.27
45 30 0.18
47 56 0.34
48 23 0.14
49 7 0.04
50 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (44 bp):
ACATGGTCTTACATGGATCCTTGCCTTACCAATGCCATGTCTTG
Found at i:69536488 original size:42 final size:42
Alignment explanation
Indices: 69536441--69536536 Score: 131
Period size: 42 Copynumber: 2.3 Consensus size: 42
69536431 GGCATCGGCT
* * *
69536441 TTGATATGTG-TACCAATGTAAGACCATATTTGGGATATGGCA
1 TTGATATGAGATACC-ATGTAAGACCATATCTGGGATATGACA
**
69536483 TTGATATGAGATTTCATGTAAGACCATATCTGGGATATGACA
1 TTGATATGAGATACCATGTAAGACCATATCTGGGATATGACA
69536525 TTGATATGAGAT
1 TTGATATGAGAT
69536537 TTTGTGTAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 46 0.96
43 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.34
Consensus pattern (42 bp):
TTGATATGAGATACCATGTAAGACCATATCTGGGATATGACA
Found at i:69536537 original size:42 final size:42
Alignment explanation
Indices: 69536456--69536551 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
69536446 ATGTGTACCA
* *
69536456 ATGTAAGACCATATTTGGGATATGGCATTGATATGAGATTTC
1 ATGTAAGACCATATCTGGGATATGACATTGATATGAGATTTC
*
69536498 ATGTAAGACCATATCTGGGATATGACATTGATATGAGATTTT
1 ATGTAAGACCATATCTGGGATATGACATTGATATGAGATTTC
*
69536540 GTGTAAGACCAT
1 ATGTAAGACCAT
69536552 GTATTGGACA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.34
Consensus pattern (42 bp):
ATGTAAGACCATATCTGGGATATGACATTGATATGAGATTTC
Found at i:69536565 original size:42 final size:41
Alignment explanation
Indices: 69536456--69536573 Score: 146
Period size: 42 Copynumber: 2.8 Consensus size: 41
69536446 ATGTGTACCA
*
69536456 ATGTAAGACCATATTTGGGATATGGCATTGATATGAGATTTC
1 ATGTAAGACCATATTT-GGATATGACATTGATATGAGATTTC
* *
69536498 ATGTAAGACCATATCTGGGATATGACATTGATATGAGATTTT
1 ATGTAAGACCATAT-TTGGATATGACATTGATATGAGATTTC
* * * *
69536540 GTGTAAGACCATGTATTGGACATGACATCGATAT
1 ATGTAAGACCATAT-TTGGATATGACATTGATAT
69536574 TAGGTCCCGT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 65 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (41 bp):
ATGTAAGACCATATTTGGATATGACATTGATATGAGATTTC
Found at i:69538082 original size:6 final size:6
Alignment explanation
Indices: 69538028--69538109 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
69538018 AGGAAACATT
* * * * *
69538028 ATCAGA A-CTAGA ATCAAA ATAAGA ATTAGA ACCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
69538077 ATCAGA ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
69538110 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
5 4 0.07
6 45 0.76
7 7 0.12
8 3 0.05
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:69538082 original size:19 final size:19
Alignment explanation
Indices: 69538055--69538106 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
69538045 AATAAGAATT
* *
69538055 AGAACCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
69538074 AGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGGTAAC
69538093 AGAATCAGAATCAG
1 AGAATCAGAATCAG
69538107 AATGTGAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.13
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:69538467 original size:22 final size:22
Alignment explanation
Indices: 69538439--69538503 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
69538429 GCAAATACGT
69538439 TTGGCACATAGCCATAATCAGG
1 TTGGCACATAGCCATAATCAGG
*
69538461 TTGGCACATAGCCAT-ATGTAGG
1 TTGGCACATAGCCATAAT-CAGG
* *
69538483 TTGGCGCAAAGCCATAATCAG
1 TTGGCACATAGCCATAATCAG
69538504 AAGGCTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (22 bp):
TTGGCACATAGCCATAATCAGG
Found at i:69538951 original size:27 final size:28
Alignment explanation
Indices: 69538889--69538952 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
69538879 CAGTCACTTG
*
69538889 CCCACAAGGGCAAAATAGTCATTTAACA
1 CCCACAAGGGCAAAATAGTAATTTAACA
* * * *
69538917 CTC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAATAGTAATTTAACA
69538943 CCCACAAGGG
1 CCCACAAGGG
69538953 TATCTCGGTA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
26 2 0.07
27 24 0.86
28 2 0.07
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (28 bp):
CCCACAAGGGCAAAATAGTAATTTAACA
Found at i:69539289 original size:27 final size:27
Alignment explanation
Indices: 69538936--69539282 Score: 408
Period size: 27 Copynumber: 12.9 Consensus size: 27
69538926 CAAAATGGTA
* *
69538936 ATTT-TACCCCACAAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
69538962 AATTCTACCCTACAGGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
69538989 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * *
69539016 ATTTCTATCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * * *
69539043 AATTCTACCCTTCAGGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
69539070 ATTTCTACCCTACAGGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
69539097 ATTTTTACCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
69539124 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* * * * *
69539151 AATTCTACCATATAGGGGCATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
69539178 ATTTCTACCCTACAAGGGTATATCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
69539205 ATTTCTACCCTATAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
** *
69539232 ATTTCTACATTACAATGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
69539259 AATTCTACCCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
69539283 AATAATTTTG
Statistics
Matches: 270, Mismatches: 50, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
26 3 0.01
27 267 0.99
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:69539304 original size:27 final size:27
Alignment explanation
Indices: 69539274--69539771 Score: 415
Period size: 27 Copynumber: 18.6 Consensus size: 27
69539264 TACCCTACAG
* * *
69539274 GGGTATTTCAATAATTTTGTAAATCAA
1 GGGTATTTCAGTAATTTTATAAATCGA
*** * * *
69539301 GGGTAAAACAGTAATTCTGTAAATCGG
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
69539328 GGGTACTTTGA-TAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTATAAATCGA
*
69539355 GGGTATTTCAGTAATTTTATAAATTGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* **
69539382 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTATAAATC-GA
* *
69539409 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*
69539436 GGGTATTTCAGTAATTTTA-CAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * * *
69539462 TGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTTATAAATCGA
* *
69539489 GGGTATTTCAGTAATTTTA-CAATCAA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * ** *
69539515 CGATATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*
69539542 GGGTATTTCAGTAATTTTA-CAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* *
69539568 TGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTATAAATCGA
* ** *
69539595 GGATATTTGGGTAATTTTATAAATCGG
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
69539622 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTATAAATCGA
* *
69539649 GGGTATTTCAGTAATTTTACAAATTGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*
69539676 GGGTATTTCAGTAATTTTA-CAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
* *
69539702 CGGTATTTC-GATAATTTTATAAATCAA
1 GGGTATTTCAG-TAATTTTATAAATCGA
* * * *
69539729 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTATAAATCGA
*
69539755 GGGCATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
69539772 GGTAAACTAA
Statistics
Matches: 382, Mismatches: 73, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
25 5 0.01
26 105 0.27
27 262 0.69
28 10 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAATCGA
Found at i:69539481 original size:53 final size:53
Alignment explanation
Indices: 69539321--69539771 Score: 509
Period size: 53 Copynumber: 8.5 Consensus size: 53
69539311 GTAATTCTGT
* * * *
69539321 AAATCGGGGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAT
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-TCGAGGGTATTTCGGTAATTTTAC
* * * *
69539375 AAATTGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTCGGTAATTTTAC
*
69539429 AAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTAC
* * * * *
69539482 AAATCAAGGGTATTTCAGTAATTTTACAATCAACGATATTTTGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTAC
* *
69539535 AAATCGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCGATAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTAC
* ** * *
69539588 AAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTA-CAATCGAGGGTA-TTTCGGTAATTTTAC
* * *
69539642 AAGTCGAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC-AATCGAGGGTATTTCGGTAATTTTAC
* * *
69539696 -AATCGACGGTATTTC-GATAATTTTATAAATCAAGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTATTTCAG-TAATTTTA-CAATCGAGGGTA-TTTCGGTAATTTTAC
* * *
69539749 AACT-GGGGGCATTTCAGTAATTT
1 AAATCGAGGGTATTTCAGTAATTT
69539772 GGTAAACTAA
Statistics
Matches: 338, Mismatches: 48, Indels: 23
0.83 0.12 0.06
Matches are distributed among these distances:
52 1 0.00
53 201 0.59
54 133 0.39
55 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGGTAATTTTAC
Found at i:69539507 original size:80 final size:80
Alignment explanation
Indices: 69539321--69539771 Score: 477
Period size: 80 Copynumber: 5.6 Consensus size: 80
69539311 GTAATTCTGT
* * * * *
69539321 AAATCGGGGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTATAAATTGAGGG
1 AAATCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA-CAATCGAGGG
** *
69539385 TATTTTAGTAATTTTGC
64 TATTTCGGTAATTTTAC
* *
69539402 AAA-CTGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATGGT
1 AAATC-GAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGT
69539466 ATTTCGGTAATTTTAC
65 ATTTCGGTAATTTTAC
* * * * **
69539482 AAATCAAGGGTATTTCAGTAATTTTAC-AATCAACGATATTTTGGTAATTTTACAAATCGAGGGT
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATCGAGGGT
*
69539546 ATTTCAGTAATTTTAC
65 ATTTCGGTAATTTTAC
* * ** * *
69539562 -AATCGATGGTATTTC-GATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGG
1 AAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTA-CAATCGAGGG
69539625 TACTTT-GGTAATTTTAC
64 TA-TTTCGGTAATTTTAC
* * *
69539642 AAGTCGAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGACGGTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTA
* *
69539707 TTTCGATAATTTTAT
66 TTTCGGTAATTTTAC
* * * * *
69539722 AAATCAAGGGTACTTT-GGTAATTTTACAACT-GGGGGCATTTCAGTAATTT
1 AAATCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
69539772 GGTAAACTAA
Statistics
Matches: 314, Mismatches: 44, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.00
79 63 0.20
80 155 0.49
81 94 0.30
82 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (80 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTA
TTTCGGTAATTTTAC
Found at i:69542880 original size:20 final size:21
Alignment explanation
Indices: 69542857--69542904 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
69542847 AATTTAAGTG
69542857 AAATTTTAATTA-TTTTATAA
1 AAATTTTAATTATTTTTATAA
69542877 AAA--TTAATTATTTTTTATAA
1 AAATTTTAATTA-TTTTTATAA
*
69542897 GAATTTTA
1 AAATTTTA
69542905 TCAAAACTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 7 0.30
20 13 0.57
22 3 0.13
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
AAATTTTAATTATTTTTATAA
Found at i:69543747 original size:38 final size:38
Alignment explanation
Indices: 69543656--69543750 Score: 122
Period size: 37 Copynumber: 2.5 Consensus size: 38
69543646 TAGTTCCACA
* *
69543656 ATTGTGGTGTGTAGGGTGGATGAGCCTATTATGGTCCT
1 ATTGTGGTGTGTAGGGTGGTTGAGCCTATCATGGTCCT
* *
69543694 A-TGTGGTGTGTAGGGTGGTTGAGTCTCTCATGG-CCTT
1 ATTGTGGTGTGTAGGGTGGTTGAGCCTATCATGGTCC-T
*
69543731 ATTGTGGTGTGCAGGGTGGT
1 ATTGTGGTGTGTAGGGTGGT
69543751 CAAAGTGTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
36 2 0.04
37 30 0.60
38 18 0.36
ACGTcount: A:0.13, C:0.11, G:0.40, T:0.37
Consensus pattern (38 bp):
ATTGTGGTGTGTAGGGTGGTTGAGCCTATCATGGTCCT
Found at i:69544878 original size:11 final size:11
Alignment explanation
Indices: 69544835--69544886 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
69544825 TTTCAAATAA
69544835 ATTTTA-TTTT
1 ATTTTATTTTT
* *
69544845 ATTTCTCTTTTA
1 ATTT-TATTTTT
*
69544857 ATTTAATTTTT
1 ATTTTATTTTT
69544868 ATTTTATTTTT
1 ATTTTATTTTT
*
69544879 AGTTTATT
1 ATTTTATT
69544887 ATCATTTATT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 4 0.12
11 22 0.67
12 7 0.21
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:69544893 original size:28 final size:27
Alignment explanation
Indices: 69544834--69544904 Score: 67
Period size: 28 Copynumber: 2.7 Consensus size: 27
69544824 TTTTCAAATA
* **
69544834 AATTTTATTTTATTTCTCTTTTAATTT
1 AATTTTATTTTATTTTTAGTTTAATTT
69544861 AATTTTTATTTTATTTTTAGTTT-ATTAT
1 AA-TTTTATTTTATTTTTAGTTTAATT-T
*
69544889 CA-TTTA-TTTATTTTTA
1 AATTTTATTTTATTTTTA
69544905 TTATGTGAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
25 10 0.26
26 4 0.11
27 5 0.13
28 19 0.50
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (27 bp):
AATTTTATTTTATTTTTAGTTTAATTT
Found at i:69548439 original size:27 final size:27
Alignment explanation
Indices: 69548380--69548440 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
69548370 GTATCATAAG
69548380 AATTAAAATAGGATAAAATAAATAATT
1 AATTAAAATAGGATAAAATAAATAATT
* *
69548407 AGTTAATAATAGTA-AAAAT-AATAATT
1 AATTAA-AATAGGATAAAATAAATAATT
69548433 AAATTAAA
1 -AATTAAA
69548441 TAAGAAAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 8 0.28
27 15 0.52
28 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTAAAATAGGATAAAATAAATAATT
Found at i:69566678 original size:46 final size:47
Alignment explanation
Indices: 69566611--69566738 Score: 138
Period size: 46 Copynumber: 2.7 Consensus size: 47
69566601 TAACCCGCAT
* * *
69566611 ATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA-CGT-TTGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTATTACAT-C
* *
69566657 ATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-GCCTA-TTACATC
* *
69566706 -TCA-TGAACTCGGACTCAACTCAACAAGCTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
69566739 ACTCAAATAT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
46 32 0.46
47 27 0.39
48 4 0.06
49 1 0.01
50 5 0.07
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (47 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTATTACATC
Found at i:69575666 original size:48 final size:48
Alignment explanation
Indices: 69575602--69575749 Score: 233
Period size: 48 Copynumber: 3.1 Consensus size: 48
69575592 CTGGGCTATC
* * * *
69575602 GGCATCTATATGTGATCCCATGTAAAACCATGTTTGGGACATGGCATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
*
69575650 GGCATCGATCTATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
* *
69575698 GGCATCGATATATGATCCCATGTAAGACCATATCTGGGATATGGCATT
1 GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
69575746 GGCA
1 GGCA
69575750 ACCTACCATG
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (48 bp):
GGCATCGATATATGATCCCATGTAAGACCATGTCTGGGACATGGCATT
Found at i:69580416 original size:16 final size:17
Alignment explanation
Indices: 69580385--69580418 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
69580375 ATAAAAAAAT
*
69580385 GAATACTACGATATAAA
1 GAATAATACGATATAAA
69580402 GAATAATAC-ATATAAA
1 GAATAATACGATATAAA
69580418 G
1 G
69580419 CAAAAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24
Consensus pattern (17 bp):
GAATAATACGATATAAA
Found at i:69580998 original size:18 final size:19
Alignment explanation
Indices: 69580953--69581000 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
69580943 TGATATACAT
69580953 AACATATATATAAAAAAACA
1 AACATA-ATATAAAAAAACA
* *
69580973 ATAAATAATATAAAAATA-A
1 A-ACATAATATAAAAAAACA
69580992 AACATAATA
1 AACATAATA
69581001 AAGATTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 7 0.29
19 2 0.08
20 11 0.46
21 4 0.17
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (19 bp):
AACATAATATAAAAAAACA
Found at i:69580998 original size:22 final size:21
Alignment explanation
Indices: 69580949--69580998 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
69580939 TACATGATAT
*
69580949 ACATAACATATATATAAAAAA
1 ACATAACATATATAAAAAAAA
69580970 ACAATAA-ATAATATAAAAATAAA
1 AC-ATAACAT-ATATAAAAA-AAA
69580993 ACATAA
1 ACATAA
69580999 TAAAGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 4 0.16
22 16 0.64
23 5 0.20
ACGTcount: A:0.70, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
ACATAACATATATAAAAAAAA
Found at i:69581118 original size:17 final size:18
Alignment explanation
Indices: 69581098--69581134 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
69581088 AGTAATTAAT
*
69581098 AAATATAAT-ATATGTGA
1 AAATATAATAATATATGA
69581115 AAATATAATAATATATGA
1 AAATATAATAATATATGA
69581133 AA
1 AA
69581135 GAGATGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (18 bp):
AAATATAATAATATATGA
Found at i:69581236 original size:15 final size:16
Alignment explanation
Indices: 69581208--69581237 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69581198 AAAAGAATAC
69581208 TTATAATAAAATAATT
1 TTATAATAAAATAATT
69581224 TTATAAT-AAATAAT
1 TTATAATAAAATAAT
69581238 ATAAAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TTATAATAAAATAATT
Found at i:69583207 original size:83 final size:83
Alignment explanation
Indices: 69583068--69583417 Score: 567
Period size: 83 Copynumber: 4.2 Consensus size: 83
69583058 TTCGATTTGT
* * *
69583068 AAGGATGTCAAATCATCTTGAGCCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCAA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCAA
*
69583133 TTTTTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
69583151 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCAA
69583216 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
69583234 AAGAATGCCAAA-CAATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCA
1 AAGGATGCCAAATC-ATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCA
*
69583298 ATTTGTTCCTTGTAAACAC
65 ATTTGTTCCTTGTAAGCAC
* *
69583317 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACAATTGAGAGTCATATCTGCAACGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCAA
*
69583382 TTTGTTCTTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
69583400 AAGGATACCAAATCATCT
1 AAGGATGCCAAATCATCT
69583418 AAGATCTGCT
Statistics
Matches: 250, Mismatches: 15, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
82 1 0.00
83 248 0.99
84 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCAA
TTTGTTCCTTGTAAGCAC
Found at i:69583554 original size:119 final size:120
Alignment explanation
Indices: 69583355--69583627 Score: 442
Period size: 119 Copynumber: 2.3 Consensus size: 120
69583345 TGAGAACAAT
* * * * *
69583355 TGAGAGTCATATCTGCAACGTCCTCGATTTG-TTCTTTGTAAGCACAAGGATACCAAATCATCTA
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTTGTAAACACAAGAATACCAAATCATCTA
* *
69583419 AGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATATTTGAGAATGTC
66 AGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTACTATATTTGAGAACGTC
* *
69583474 TGAGAGTCAAATCTACTATGTCCTCGATTTGTTTC-TTGTAAACACAAGAATACCAAATCATCTT
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTTGTAAACACAAGAATACCAAATCATCTA
*
69583538 GGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTACTATATTTGAGAACGTC
66 AGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTACTATATTTGAGAACGTC
69583593 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTC
1 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTC
69583628 AAGAATACCA
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
119 139 0.98
120 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (120 bp):
TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTTGTAAACACAAGAATACCAAATCATCTA
AGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTACTATATTTGAGAACGTC
Found at i:69595664 original size:18 final size:18
Alignment explanation
Indices: 69595620--69595666 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
69595610 TGATATACAT
69595620 AACATATATATAAAAAACA
1 AACATA-ATATAAAAAACA
*
69595639 ATAAATAATATAAAAATA-A
1 A-ACATAATATAAAAA-ACA
69595658 AACATAATA
1 AACATAATA
69595667 AAGATTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 12 0.50
20 5 0.21
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.23
Consensus pattern (18 bp):
AACATAATATAAAAAACA
Found at i:69595675 original size:25 final size:24
Alignment explanation
Indices: 69595629--69595683 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
69595619 TAACATATAT
*
69595629 ATAAAAAACAATAAATAATATAAAA
1 ATAAAAAACAATAAAGAATAT-AAA
* * * *
69595654 ATAAAACATAATAAAGATTATATA
1 ATAAAAAACAATAAAGAATATAAA
69595678 ATAAAA
1 ATAAAA
69595684 TGTAATATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (24 bp):
ATAAAAAACAATAAAGAATATAAA
Found at i:69595781 original size:17 final size:18
Alignment explanation
Indices: 69595761--69595797 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
69595751 AGTAATTAAT
*
69595761 AAATATAAT-ATATGTGA
1 AAATATAATAATATATGA
69595778 AAATATAATAATATATGA
1 AAATATAATAATATATGA
69595796 AA
1 AA
69595798 GAGATGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (18 bp):
AAATATAATAATATATGA
Found at i:69595836 original size:22 final size:22
Alignment explanation
Indices: 69595807--69595858 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
69595797 AGAGATGTAA
69595807 AATA-ATAATTTAAGGAAATAAT
1 AATATATAATTTAA-GAAATAAT
*
69595829 -ATATATAA--TAAGTAATAAT
1 AATATATAATTTAAGAAATAAT
69595848 AATATATAATT
1 AATATATAATT
69595859 AAAAAGAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
19 7 0.28
20 11 0.44
21 3 0.12
22 4 0.16
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37
Consensus pattern (22 bp):
AATATATAATTTAAGAAATAAT
Found at i:69616094 original size:39 final size:41
Alignment explanation
Indices: 69616050--69616173 Score: 171
Period size: 39 Copynumber: 2.9 Consensus size: 41
69616040 ACAAGGATAC
*
69616050 CATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC-A
1 CATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAA
69616090 -ATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGA
1 CATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC-A--A
69616133 TGCCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGA
1 ---CATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGA
69616174 TAAGGATATC
Statistics
Matches: 75, Mismatches: 1, Indels: 9
0.88 0.01 0.11
Matches are distributed among these distances:
39 37 0.49
43 1 0.01
47 37 0.49
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (41 bp):
CATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAA
Found at i:69616143 original size:47 final size:47
Alignment explanation
Indices: 69616090--69616196 Score: 178
Period size: 47 Copynumber: 2.3 Consensus size: 47
69616080 TGGTAAGACA
*
69616090 ATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATGCC
1 ATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACC
* *
69616137 ATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATC
1 ATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACC
*
69616184 AGGTAAGACCATG
1 ATGTAAGACCATG
69616197 CCAAGGCATG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACC
Found at i:69616296 original size:55 final size:53
Alignment explanation
Indices: 69616186--69616392 Score: 226
Period size: 53 Copynumber: 3.9 Consensus size: 53
69616176 AGGATATCAG
* *
69616186 GTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAA--T-CAT
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTCCAT
*
69616236 GTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCAT
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGAAAAGGT-CCAT
* * * *
69616291 GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-CAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGG-T-CCAT
* * * * * *
69616344 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAAAGGT
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGT
69616393 TCCCGAGTAA
Statistics
Matches: 134, Mismatches: 15, Indels: 12
0.83 0.09 0.07
Matches are distributed among these distances:
50 31 0.23
51 12 0.09
52 4 0.03
53 42 0.31
54 7 0.05
55 38 0.28
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTCCAT
Found at i:69620209 original size:29 final size:29
Alignment explanation
Indices: 69620173--69620275 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
69620163 GATTGAAGAA
*
69620173 CTCGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACACAGTGCCTCAATTAACGAT
* * ** *
69620202 CTTGCACACAAAGTG-CTCGGTTAAAGGAAT
1 CTCGCACACACAGTGCCTCAATT-AACG-AT
**
69620232 -TCGCACACACAGTGCCTCAATTATTGAT
1 CTCGCACACACAGTGCCTCAATTAACGAT
*
69620260 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
69620276 TCGGTTAAAG
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
28 7 0.12
29 43 0.75
30 7 0.12
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAATTAACGAT
Found at i:69620239 original size:58 final size:58
Alignment explanation
Indices: 69620156--69620306 Score: 223
Period size: 58 Copynumber: 2.6 Consensus size: 58
69620146 TGCTCGACAT
* * * *
69620156 AGTGCTCGATTGAA-GAACTCGCACACACAGTGCCTCAATTACCGATCTTGCACACAA
1 AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCGATCTCGCACACAA
** *
69620213 AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTATTGATCTCGCACACAT
1 AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCGATCTCGCACACAA
*
69620271 AGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCT
1 AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCT
69620307 TTAATCATTC
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
57 12 0.14
58 73 0.86
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (58 bp):
AGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACCGATCTCGCACACAA
Found at i:69620295 original size:29 final size:29
Alignment explanation
Indices: 69620205--69620304 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
69620195 TACCGATCTT
*
69620205 GCACACAAAGTGCTCGGTTAAAGGAATTC
1 GCACACACAGTGCTCGGTTAAAGGAATTC
** **
69620234 GCACACACAGTGCCTCAATT-ATTG-ATCTC
1 GCACACACAGTG-CTCGGTTAAAGGAAT-TC
* *
69620263 GCACACATAGTGCTCGGTTAAAGGAATTT
1 GCACACACAGTGCTCGGTTAAAGGAATTC
69620292 GCACACACAGTGC
1 GCACACACAGTGC
69620305 CTTTAATCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 7 0.13
29 41 0.75
30 7 0.13
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (29 bp):
GCACACACAGTGCTCGGTTAAAGGAATTC
Found at i:69620522 original size:43 final size:43
Alignment explanation
Indices: 69620461--69620854 Score: 574
Period size: 43 Copynumber: 9.2 Consensus size: 43
69620451 CCTTGCTCGA
** *
69620461 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
69620504 ATCACCGGCACGAAGCCTGCTAGGTACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
69620547 ATCACCAGCACGAAGCCTGCTAGGTACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
69620590 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
69620633 ATCATCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* ** * *
69620676 ATTATTGGCACGAAGCCTGCTAGGCACAAAGGCCTGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
69620719 ATCATCGGCACAAAGCCTGCTAGGCATGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
69620762 ATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
69620805 ATCACCGGCACGAAGCTTGCTAGGCACGAAGGCCTC-AATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC-CGAATACAC
69620848 ATCACCG
1 ATCACCG
69620855 AGTTTCATGG
Statistics
Matches: 319, Mismatches: 31, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
43 318 1.00
44 1 0.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:69622290 original size:35 final size:35
Alignment explanation
Indices: 69622251--69622323 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
69622241 ACACATTCTT
69622251 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
69622286 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
69622321 TAT
1 TAT
69622324 CACATACCTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:69631783 original size:13 final size:13
Alignment explanation
Indices: 69631767--69631799 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
69631757 TTTAATTAAA
*
69631767 TTAGTTAATTAGT
1 TTAGATAATTAGT
69631780 TTAGATAATTAGT
1 TTAGATAATTAGT
69631793 TTA-ATAA
1 TTAGATAA
69631800 ACAAACTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:69640616 original size:122 final size:120
Alignment explanation
Indices: 69640401--69640624 Score: 322
Period size: 122 Copynumber: 1.9 Consensus size: 120
69640391 CACTATAACA
* * * *
69640401 ATGAGAATTAGAATAGAAATGTAATGGGTATGAGGTTTTCCTAATCTCAATTTAACACGGAATGT
1 ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGTTCCTAATCTCAATTTAACACGAAATGT
* *
69640466 AGGATAACTAACCTAGGAATGTAAATTAAATGATAGACATTGGCATTGTAATAGC
66 AGGATAACTAACCTAAGAATGCAAATTAAATGATAGACATTGGCATTGTAATAGC
* * * **
69640521 ATGAGAATAAGCATAGTAATGTCATAGGTATGAGGTGTTCCTAATAACTTGATTTAACACGAAAT
1 ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGTTCCTAAT--CTCAATTTAACACGAAAT
*
69640586 GTATGATAACTAACCTAAGAATGCAAATTAAATGATAGA
64 GTAGGATAACTAACCTAAGAATGCAAATTAAATGATAGA
69640625 AAAATGAAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
120 39 0.43
122 51 0.57
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (120 bp):
ATGAGAATAAGAATAGAAATGTAATAGGTATGAGGTGTTCCTAATCTCAATTTAACACGAAATGT
AGGATAACTAACCTAAGAATGCAAATTAAATGATAGACATTGGCATTGTAATAGC
Found at i:69645845 original size:45 final size:45
Alignment explanation
Indices: 69645775--69645861 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
69645765 AACATGTGTG
* * *
69645775 ACATATATCATGAACTCAGATCACAACTCAATGAGTTCAGATGCC
1 ACATATATCATGAACTCAAACCACAACTCAATAAGTTCAGATGCC
* *
69645820 ACATTTATCATGAACTCAAACCACAACTTAATAAGTTCAGAT
1 ACATATATCATGAACTCAAACCACAACTCAATAAGTTCAGAT
69645862 AACATAATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.26
Consensus pattern (45 bp):
ACATATATCATGAACTCAAACCACAACTCAATAAGTTCAGATGCC
Found at i:69657562 original size:27 final size:26
Alignment explanation
Indices: 69657531--69657589 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
69657521 ACTGCCAGAA
*
69657531 ACAGTAAATGTGGCAAAGCCATCAGT
1 ACAGTAAATGTGGCAAAGCCACCAGT
* *
69657557 ATCAGTAATTGTGGCATAGCCACCAGT
1 A-CAGTAAATGTGGCAAAGCCACCAGT
69657584 ACAGTA
1 ACAGTA
69657590 CTTCCTCCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
ACAGTAAATGTGGCAAAGCCACCAGT
Found at i:69657755 original size:27 final size:27
Alignment explanation
Indices: 69657725--69657841 Score: 112
Period size: 27 Copynumber: 4.4 Consensus size: 27
69657715 GGGCATAATC
* ** *
69657725 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAAAGGCATTACG
* * *
69657752 GTCATTTCACCCTATAAAGGCATTATG
1 GTCATTTTACCCTACAAAGGCATTACG
* *
69657779 GTCATTTTACCCT--ATAGGATATTACG
1 GTCATTTTACCCTACAAAGG-CATTACG
* *
69657805 GTCATTTCACCCTACAAAGGCATTACA
1 GTCATTTTACCCTACAAAGGCATTACG
69657832 GTCATTTTAC
1 GTCATTTTAC
69657842 ACCACCAGGG
Statistics
Matches: 71, Mismatches: 16, Indels: 6
0.76 0.17 0.06
Matches are distributed among these distances:
25 4 0.06
26 17 0.24
27 46 0.65
28 4 0.06
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAAAGGCATTACG
Found at i:69657818 original size:53 final size:54
Alignment explanation
Indices: 69657710--69657841 Score: 176
Period size: 53 Copynumber: 2.5 Consensus size: 54
69657700 TCATACGGAA
* * * *
69657710 TATAAGGGCATAATCGTCATTTTACCATACAGGGGTATTACGGTCATTTCACCC
1 TATAAAGGCATTATAGTCATTTTACCATACAGGGATATTACGGTCATTTCACCC
* * *
69657764 TATAAAGGCATTATGGTCATTTTACCCTATA-GGATATTACGGTCATTTCACCC
1 TATAAAGGCATTATAGTCATTTTACCATACAGGGATATTACGGTCATTTCACCC
* *
69657817 TACAAAGGCATTACAGTCATTTTAC
1 TATAAAGGCATTATAGTCATTTTAC
69657842 ACCACCAGGG
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
53 43 0.62
54 26 0.38
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (54 bp):
TATAAAGGCATTATAGTCATTTTACCATACAGGGATATTACGGTCATTTCACCC
Found at i:69665226 original size:48 final size:48
Alignment explanation
Indices: 69665109--69665433 Score: 322
Period size: 48 Copynumber: 6.7 Consensus size: 48
69665099 GTGAGATGCC
* *
69665109 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTATATTG-GTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC--ATATTGAG-GCT
** * *
69665159 GATGCCATGTTTCAAACATGGTCTTACACCAGCTCACATATTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCT
* * *
69665207 GATGCCATGTCCCGGACATGGTCTTACACTAGCTCTACGATA--AATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-AC-ATATTGAGGCT
* * * * **
69665255 GATACCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCT
* * * *
69665303 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAACTG-GTG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT--ATTGAG-GCT
* *
69665352 CGATGCCATGTCCCAGACATGGTCTTACACTA--ACACATATTGAGGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCT
*
69665399 GATGCCATGTCCTAGACATGGTCTTACACTAGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC
69665434 TCGTATCCCT
Statistics
Matches: 227, Mismatches: 35, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
46 37 0.16
47 3 0.01
48 117 0.52
49 5 0.02
50 65 0.29
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCT
Found at i:69665290 original size:96 final size:94
Alignment explanation
Indices: 69665109--69665436 Score: 390
Period size: 96 Copynumber: 3.4 Consensus size: 94
69665099 GTGAGATGCC
* ** *
69665109 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTATATTGGTGCTGATGCCATGTTTCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCG-ATA--AATGCTGATGCCATGTTCCAA
*
69665174 ACATGGTCTTACACCAGCTCACATATTGAGGCT
63 ACATGGTCTTACA-CTGCTCACATATTGAGGCT
* *
69665207 GATGCCATGTCCCGGACATGGTCTTACACTAGCTCTACGATAAATGCTGATACCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CGATAAATGCTGATGCCATGTTCCAAAC
**
69665272 ATGGTCTTACACTGGCTCACATATCAAGGCT
65 ATGGTCTTACACT-GCTCACATATTGAGGCT
* * * *
69665303 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTC-ATAAACTGGTGTCGATGCCATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGATAAA-T-G-CT-GATGCCATGTTCCA
* ** *
69665367 GACATGGTCTTACACT-AACACATATTGAGGCC
62 AACATGGTCTTACACTGCTCACATATTGAGGCT
*
69665399 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCG
69665437 TATCCCTAGT
Statistics
Matches: 199, Mismatches: 24, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
94 5 0.03
95 3 0.02
96 124 0.62
97 1 0.01
98 64 0.32
99 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGATAAATGCTGATGCCATGTTCCAAACA
TGGTCTTACACTGCTCACATATTGAGGCT
Found at i:69676444 original size:28 final size:28
Alignment explanation
Indices: 69676379--69676477 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
69676369 CATGAGATTG
* * *
69676379 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
69676408 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
69676436 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
69676464 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69676478 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:69689194 original size:43 final size:42
Alignment explanation
Indices: 69689141--69689225 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 42
69689131 TTGAAGGACT
* *
69689141 AAATTGTGAATTAAACATGTTGTATGGTCTTATATACAAGCCA
1 AAATTATGAATTAAACATGTTGTATGG-CTCATATACAAGCCA
*
69689184 AAATTATGAATTAAACATGTTGTATGGCTCATATAGAAGCCA
1 AAATTATGAATTAAACATGTTGTATGGCTCATATACAAGCCA
69689226 TGAAAATTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 13 0.33
43 26 0.67
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (42 bp):
AAATTATGAATTAAACATGTTGTATGGCTCATATACAAGCCA
Found at i:69689751 original size:43 final size:43
Alignment explanation
Indices: 69689669--69689816 Score: 142
Period size: 43 Copynumber: 3.5 Consensus size: 43
69689659 TGAGACATCG
* * * *
69689669 TGTAAGACCGTGTCTGGGACACAGGCCTCGAT-TAAGATTTACA
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATAT-TGATTTACA
* ** * *
69689712 TATAAGACCCTGTCTGGGACATTGTCATC-ATATTTGATTT-CG
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATA-TTGATTTACA
* *
69689754 TGTAAGACTCTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGATTTACA
69689797 TGTAAGACCGC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
69689817 GTTGGCATTG
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 33 0.39
43 49 0.58
44 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGATTTACA
Found at i:69689832 original size:85 final size:85
Alignment explanation
Indices: 69689666--69689824 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 85
69689656 GTTTGAGACA
* *
69689666 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTAAGATTTACATATAAGACCCTGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCATCGATTAAGAATTACATATAAGACCCTGTCTGGGA
*
69689731 CATTGTCATCATATTTGATT
66 CATTGGCATCATATTTGATT
* * *
69689751 TCGTGTAAGACTC-TGTCTGGGACAGAGGCATCGA-TATTGAATTACATGTAAGACCGC-GTCTG
1 TCGTGTAAGAC-CGTGTCTGGGACACAGGCATCGATTA-AGAATTACATATAAGACC-CTGTCTG
*
69689813 GGACGTTGGCAT
63 GGACATTGGCAT
69689825 TGTATTTGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
84 2 0.03
85 60 0.94
86 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGACCGTGTCTGGGACACAGGCATCGATTAAGAATTACATATAAGACCCTGTCTGGGA
CATTGGCATCATATTTGATT
Found at i:69692489 original size:40 final size:39
Alignment explanation
Indices: 69692445--69692613 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 39
69692435 CGCTAGGACA
** * * *
69692445 AAAAACGTTGCTATAAATCTAGCATTAGCGGCGGTATTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCT-TTTG
* * * **
69692485 AAAAACACCGCTATAGATCAAGAATCAGCAACGCTTCTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTT-TTG
69692525 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGC-TTTTG
* * * *
69692565 AAAAACGCCACTATAGGTCGACCATTAGCGGCGCTTTCTG
1 AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTT-TG
*
69692605 AAAATCGCC
1 AAAAACGCC
69692614 ACAAAAAAAT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 4 0.04
40 100 0.94
41 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (39 bp):
AAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTG
Found at i:69693413 original size:14 final size:14
Alignment explanation
Indices: 69693389--69693417 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
69693379 CGGGTTAAGG
69693389 GTTTAGGGTTTATA
1 GTTTAGGGTTTATA
69693403 GTTTAGGGTTTATA
1 GTTTAGGGTTTATA
69693417 G
1 G
69693418 GATAGGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTATA
Found at i:69693555 original size:14 final size:14
Alignment explanation
Indices: 69693536--69693582 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
69693526 TTATTATTTG
*
69693536 GGTTTAGAGTTTTT
1 GGTTTAGAGTTTAT
*
69693550 GGTTTAGGGTTTAT
1 GGTTTAGAGTTTAT
*
69693564 GGTTTAGAGTTTGT
1 GGTTTAGAGTTTAT
69693578 GGTTT
1 GGTTT
69693583 TCTGTTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.13, C:0.00, G:0.34, T:0.53
Consensus pattern (14 bp):
GGTTTAGAGTTTAT
Found at i:69697024 original size:51 final size:48
Alignment explanation
Indices: 69696849--69697034 Score: 212
Period size: 49 Copynumber: 3.8 Consensus size: 48
69696839 GCCGAAACTA
* * * * *
69696849 TCTGGTACGCATAGTAGCCTGCACTTAGTACTAAACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAG
* *
69696898 TCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTCACA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA--TCACAG
**
69696947 TCTAATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
* *
69696995 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
69697035 TGCGACCTCA
Statistics
Matches: 116, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 5 0.04
49 74 0.64
50 3 0.03
51 34 0.29
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
Found at i:69697029 original size:100 final size:98
Alignment explanation
Indices: 69696858--69697046 Score: 254
Period size: 100 Copynumber: 1.9 Consensus size: 98
69696848 ATCTGGTACG
* * * *
69696858 CATAGTAGCCTGCACTTAGTACTAAACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCATT
1 CATAGTAGCCTGCACTTAGTACTAAACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACT
*
69696923 TAGTACTACACACGTGACCTCACATCTAATACA
66 TAGTACTACACACGCGACCTCACATCTAATACA
* * * *
69696956 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTAAACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGC
*
69697020 ACTTAGTACTACACATGCGACCTCACA
63 ACTTAGTACTACACACGCGACCTCACA
69697047 ATAGATCATT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
97 4 0.05
98 31 0.40
100 43 0.55
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTAAACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTCACATCTAATACA
Found at i:69705120 original size:71 final size:67
Alignment explanation
Indices: 69705045--69705186 Score: 169
Period size: 67 Copynumber: 2.1 Consensus size: 67
69705035 TCACCAGATA
* * *
69705045 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACC-AGATTGCAGCG
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCAAAGCC-CCTAGATTGCAGCG
69705109 AGGCTGC
61 AGGCTGC
* ** *
69705116 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGTGAGGCCCCTAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCCCTAGATTGCAGCGAGGCT
69705181 GC
66 GC
69705183 CAGA
1 CAGA
69705187 ACGCTTACTC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
66 2 0.03
67 36 0.57
71 25 0.40
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCCCTAGATTGCAGCGAGGCT
GC
Found at i:69706734 original size:17 final size:18
Alignment explanation
Indices: 69706712--69706745 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69706702 TATTTATTTT
69706712 AATATA-TTAAAATTATC
1 AATATAGTTAAAATTATC
*
69706729 AATATAGTTTAAATTAT
1 AATATAGTTAAAATTAT
69706746 TTAAGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AATATAGTTAAAATTATC
Found at i:69710811 original size:42 final size:43
Alignment explanation
Indices: 69710742--69710977 Score: 188
Period size: 43 Copynumber: 5.5 Consensus size: 43
69710732 ATAACTTTTT
** * ** * * *
69710742 TAAAGGTTTTGATCTTTAGCGTTGTTTGTGAGAAAAGTGCCGT
1 TAAAGGTCATGATCTATAGCGGCGTTTGTGGGGAAAGTGCCGC
*
69710785 TAAAGGTC-T-ACTCTATAGCGGCGTTTGTGGGGAAAGTGTCGC
1 TAAAGGTCATGA-TCTATAGCGGCGTTTGTGGGGAAAGTGCCGC
* * *
69710827 TAAAGGTCATGATTTTTAGCGGCATTTGTGGGGAAAGTGCCGC
1 TAAAGGTCATGATCTATAGCGGCGTTTGTGGGGAAAGTGCCGC
* * * * * *
69710870 TAAAGGTCATGGTTTTTAGCAGCATTTGTGGGGAAAGCGCCGC
1 TAAAGGTCATGATCTATAGCGGCGTTTGTGGGGAAAGTGCCGC
* ** * * * * * *
69710913 TAAAAGTTGTGATTTTTAGCTGCGTTTGTAGGGAAAGCGCCAC
1 TAAAGGTCATGATCTATAGCGGCGTTTGTGGGGAAAGTGCCGC
* *
69710956 TAAAGGTCATGTTCTTTAGCGG
1 TAAAGGTCATGATCTATAGCGG
69710978 AATTTTTTTC
Statistics
Matches: 161, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
41 1 0.01
42 33 0.20
43 126 0.78
44 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (43 bp):
TAAAGGTCATGATCTATAGCGGCGTTTGTGGGGAAAGTGCCGC
Found at i:69710857 original size:43 final size:43
Alignment explanation
Indices: 69710800--69710982 Score: 224
Period size: 43 Copynumber: 4.3 Consensus size: 43
69710790 GTCTACTCTA
* * *
69710800 TAGCGGCGTTTGTGGGGAAAGTGTCGCTAAAGGTCATGATTTT
1 TAGCGGCATTTGTGGGGAAAGCGCCGCTAAAGGTCATGATTTT
* *
69710843 TAGCGGCATTTGTGGGGAAAGTGCCGCTAAAGGTCATGGTTTT
1 TAGCGGCATTTGTGGGGAAAGCGCCGCTAAAGGTCATGATTTT
* * **
69710886 TAGCAGCATTTGTGGGGAAAGCGCCGCTAAAAGTTGTGATTTT
1 TAGCGGCATTTGTGGGGAAAGCGCCGCTAAAGGTCATGATTTT
* * * *
69710929 TAGCTGCGTTTGTAGGGAAAGCGCCACTAAAGGTCATG-TTCTT
1 TAGCGGCATTTGTGGGGAAAGCGCCGCTAAAGGTCATGATT-TT
*
69710972 TAGCGGAATTT
1 TAGCGGCATTT
69710983 TTTTCATAAA
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
42 2 0.02
43 118 0.98
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.31
Consensus pattern (43 bp):
TAGCGGCATTTGTGGGGAAAGCGCCGCTAAAGGTCATGATTTT
Done.