Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 210 of 332
Found at i:69720417 original size:22 final size:22
Alignment explanation
Indices: 69720375--69720418 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
69720365 AATTATTTAC
* *
69720375 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
69720397 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
69720419 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:69720719 original size:40 final size:40
Alignment explanation
Indices: 69720645--69720746 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
69720635 AACCCCAGTA
* *
69720645 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAAAG
*
69720684 CCTTCGGGTCTTAGCCCAGATATAGTCAA-TAGCACAAAAG
1 CCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAAAG
*
69720724 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
69720747 CATTCGAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.22
40 39 0.71
41 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAAAG
Found at i:69722818 original size:50 final size:49
Alignment explanation
Indices: 69722757--69723018 Score: 220
Period size: 48 Copynumber: 5.4 Consensus size: 49
69722747 GGGCTGTCAC
* * * *
69722757 ACATGGCCTTACACTGGCTTTCGTATATTGGTGTTGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGC-TTCATATATTGGTGTCGATGCCATGTTCCAG
* *
69722807 ACATGGTCTTACACTGAC-TCACATATTGAG-G-CTGATGCCAT-TTCCTAG
1 ACATGGTCTTACACTGGCTTCATATATTG-GTGTC-GATGCCATGTTCC-AG
* * ** * *
69722855 ACATGGTCTTACACTAGCTCTCGTATA--AATGACGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCT-TCATATATTGGTGTCGATGCCATGTTCCAG
* * *
69722903 ACATGGTCTTACATTGGC-TCACATATCGAG-GTCGATGCCATG-TCCTAG
1 ACATGGTCTTACACTGGCTTCATATATTG-GTGTCGATGCCATGTTCC-AG
* *
69722951 ACATGGTCTTACACTGGCTCTCATAAATTGGT-TCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCT-TCATATATTGGTGT-CGATGCCATGTTCCAG
69723001 ACATGGTCTTACACTGGC
1 ACATGGTCTTACACTGGC
69723019 ACATATCAAG
Statistics
Matches: 169, Mismatches: 26, Indels: 34
0.74 0.11 0.15
Matches are distributed among these distances:
46 5 0.03
47 7 0.04
48 89 0.53
49 8 0.05
50 58 0.34
51 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (49 bp):
ACATGGTCTTACACTGGCTTCATATATTGGTGTCGATGCCATGTTCCAG
Found at i:69722847 original size:48 final size:48
Alignment explanation
Indices: 69722791--69723057 Score: 203
Period size: 48 Copynumber: 5.6 Consensus size: 48
69722781 ATATTGGTGT
*
69722791 TGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATTGAGGC
1 TGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCGAGGC
* * * ** *
69722839 TGATGCCAT-TTCCTAGACATGGTCTTACACT-AGCTCTCGTATAAATGAC
1 TGATGCCATGTTCC-AAACATGGTCTTACACTGA-CTCACATATCGA-GGC
* *
69722888 -GATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAGG-
1 TGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCGAGGC
* * * * *
69722934 TCGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCATAAATTG-GTTC
1 T-GATGCCATGTTCC-AAACATGGTCTTACACTGACTCACAT--ATCGAG-GC
* * * * *
69722985 CGATGCCATGTCCCAGACATGGTCTTACACTG--GCACATATCAAGGC
1 TGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCGAGGC
*
69723031 CGATGCCATG-TCACAAA-ATGGTCTTAC
1 TGATGCCATGTTC-CAAACATGGTCTTAC
69723058 GCTAGCTCTC
Statistics
Matches: 176, Mismatches: 28, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
45 11 0.06
46 16 0.09
47 10 0.06
48 100 0.57
49 7 0.04
50 30 0.17
51 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
TGATGCCATGTTCCAAACATGGTCTTACACTGACTCACATATCGAGGC
Found at i:69722924 original size:96 final size:99
Alignment explanation
Indices: 69722757--69723071 Score: 357
Period size: 96 Copynumber: 3.3 Consensus size: 99
69722747 GGGCTGTCAC
* * * **
69722757 ACATGGCCTTACACTGGCTTTCGTAT--ATTGGTGTTGATGCCATGTTCCAAACATGGTCTTACA
1 ACATGGTCTTACACTAGCTCTCGTATAAATTGGT-ACGATGCCATGTTCCAAACATGGTCTTACA
* * *
69722820 CTGACTCACATATTGAGGCTGATGCCATTTCCTAG
65 CTGGCTCACATATCGAGGCTGATGCCATGTCCTAG
*
69722855 ACATGGTCTTACACTAGCTCTCGTATAAA-T-G-ACGATGCCATGTTCCAAACATGGTCTTACAT
1 ACATGGTCTTACACTAGCTCTCGTATAAATTGGTACGATGCCATGTTCCAAACATGGTCTTACAC
69722917 TGGCTCACATATCGAGG-TCGATGCCATGTCCTAG
66 TGGCTCACATATCGAGGCT-GATGCCATGTCCTAG
* * * *
69722951 ACATGGTCTTACACTGGCTCTC--ATAAATTGGTTCCGATGCCATGTCCCAGACATGGTCTTACA
1 ACATGGTCTTACACTAGCTCTCGTATAAATTGG-TACGATGCCATGTTCCAAACATGGTCTTACA
* *
69723014 CTGG--CACATATCAAGGCCGATGCCATGTCAC-A-
65 CTGGCTCACATATCGAGGCTGATGCCATGTC-CTAG
* *
69723046 AAATGGTCTTACGCTAGCTCTCGTAT
1 ACATGGTCTTACACTAGCTCTCGTAT
69723072 CCCTAGTATC
Statistics
Matches: 187, Mismatches: 19, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
94 5 0.03
95 21 0.11
96 102 0.55
97 3 0.02
98 54 0.29
99 1 0.01
100 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (99 bp):
ACATGGTCTTACACTAGCTCTCGTATAAATTGGTACGATGCCATGTTCCAAACATGGTCTTACAC
TGGCTCACATATCGAGGCTGATGCCATGTCCTAG
Found at i:69723208 original size:21 final size:19
Alignment explanation
Indices: 69723170--69723209 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
69723160 AAAATTGAGC
*
69723170 ATTTAATGCAATATCAATA
1 ATTTAATGCAATAACAATA
69723189 ATTTAATGCATAATAACAATA
1 ATTTAATGC--AATAACAATA
69723210 GAGTTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (19 bp):
ATTTAATGCAATAACAATA
Found at i:69729094 original size:13 final size:13
Alignment explanation
Indices: 69729076--69729101 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69729066 ATATTATAAT
69729076 TATTTTATGTTAA
1 TATTTTATGTTAA
69729089 TATTTTATGTTAA
1 TATTTTATGTTAA
69729102 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:69730514 original size:40 final size:40
Alignment explanation
Indices: 69730459--69730640 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
69730449 TATTCGGATG
*
69730459 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
69730499 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
69730539 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
69730579 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
69730619 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69730641 TACTTGGGTT
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 15 0.11
40 118 0.87
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:69737144 original size:13 final size:13
Alignment explanation
Indices: 69737126--69737151 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69737116 ATATTATAAT
69737126 TATTTTATGTTAA
1 TATTTTATGTTAA
69737139 TATTTTATGTTAA
1 TATTTTATGTTAA
69737152 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:69738617 original size:40 final size:40
Alignment explanation
Indices: 69738508--69738687 Score: 287
Period size: 39 Copynumber: 4.6 Consensus size: 40
69738498 TATTCGGATG
*
69738508 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
69738547 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
69738586 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
69738626 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
69738666 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69738688 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 68 0.51
40 64 0.48
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:69738638 original size:79 final size:80
Alignment explanation
Indices: 69738508--69738687 Score: 287
Period size: 79 Copynumber: 2.3 Consensus size: 80
69738498 TATTCGGATG
*
69738508 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGT-CCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
69738571 TTTGTGCTAG-TGACT
66 TTTGTGCGAGTTG-CT
*
69738586 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
69738651 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
*
69738666 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69738688 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
78 15 0.16
79 52 0.55
80 26 0.27
81 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:69743199 original size:26 final size:26
Alignment explanation
Indices: 69743170--69743220 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
69743160 ATCAATGATC
* *
69743170 AAATTAATCAAATG-ATTAAATAAAGT
1 AAATAAAT-AAATGAATTAAAGAAAGT
69743196 AAATAAATAAATGAATTAAAGAAAG
1 AAATAAATAAATGAATTAAAGAAAG
69743221 ACAAATGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.25
Consensus pattern (26 bp):
AAATAAATAAATGAATTAAAGAAAGT
Found at i:69749342 original size:94 final size:92
Alignment explanation
Indices: 69749218--69749389 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 92
69749208 ACCATGTAGC
* * * * *
69749218 CGATGCATGTCCCAGACATGTCTTACACTGG-TTTACAT-CTCGAGGCCCATGCATGTCCCATAC
1 CGATGCATATCCCAGACATGACTTACACTGGCTCT-CATAAT-GAGGCCCATGCATGTCCCAGAC
69749281 ATGTCTTACACTAGCTCTCGTCTCAATGT
64 ATGTCTTACACTAGCTCTCGTCTCAATGT
* * *
69749310 CGATGCCATATCCTAGACATGGACTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
1 CGATG-CATATCCCAGACAT-GACTTACACTGGCTCTCATAATGAGGCCCATGCATGTCCCAGAC
69749375 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
69749390 ACACAAATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 5 0.07
93 12 0.18
94 48 0.71
95 3 0.04
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (92 bp):
CGATGCATATCCCAGACATGACTTACACTGGCTCTCATAATGAGGCCCATGCATGTCCCAGACAT
GTCTTACACTAGCTCTCGTCTCAATGT
Found at i:69756127 original size:40 final size:40
Alignment explanation
Indices: 69756072--69756296 Score: 294
Period size: 40 Copynumber: 5.6 Consensus size: 40
69756062 TATTCGGATG
69756072 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
69756112 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
69756152 ATATCCGGGCGAAGTCGCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
* *
69756195 ATACCCGGGCTAAGTTCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
69756235 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
69756275 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69756297 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 15 0.09
40 111 0.68
41 2 0.01
43 33 0.20
44 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:69756315 original size:83 final size:79
Alignment explanation
Indices: 69756072--69756296 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 79
69756062 TATTCGGATG
*
69756072 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGAGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCCGA-CTAAGTCCCGAAGGC
69756136 ATTTGTGCTAGTGACT
64 ATTTGTGCTAGTGACT
* * * * *
69756152 ATATCCGGGCGAAGTCGCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTTCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCC-GACTAAGTCCCGAAG
69756217 GCATTTGTGCTAGTGACT
62 GCATTTGTGCTAGTGACT
* * *
69756235 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTGCTATATCCGACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGACTAAGTCCCGAAGG
69756297 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
79 13 0.10
80 42 0.33
81 1 0.01
83 67 0.53
84 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGACTAAGTCCCGAAGGCAT
TTGTGCTAGTGACT
Found at i:69760082 original size:47 final size:47
Alignment explanation
Indices: 69760013--69760233 Score: 218
Period size: 47 Copynumber: 4.7 Consensus size: 47
69760003 ATAGGGTATA
*
69760013 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGTT
1 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTT
* * *
69760060 AAGTCGATGCCATGTTCCAGACATGGTCTTACACTAACTTTCACGTT
1 AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTT
* *
69760107 AAGTCGATGCCATGTCCCTA-ACATTGTCTTACATTGACTCTCACGTAT
1 AAGTCGATGCCATGTCCC-AGACATGGTCTTACACTGACTCTCACGT-T
* * * * * * * *
69760155 CCATGCCGATACCACGTCGCAGACAAGGTCTTACACTGACACATCATG-T
1 --AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACGTT
* *
69760204 -AGCCGATG-CATATCCCAGACAT-GTCTTACA
1 AAGTCGATGCCATGTCCCAGACATGGTCTTACA
69760234 TTGGCTTACA
Statistics
Matches: 143, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
44 8 0.06
45 10 0.07
46 6 0.04
47 82 0.57
48 2 0.01
49 2 0.01
50 29 0.20
51 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTT
Found at i:69760292 original size:46 final size:46
Alignment explanation
Indices: 69760208--69760378 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
69760198 TCATGTAGCC
* *
69760208 GATGCATATCCCAGACATGTCTTACATTGGCT-TACATCTCGAGGCT
1 GATGCATATCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCT
* * ***
69760254 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATAAT
1 GATGCATATCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCT
* * * *
69760300 GATGACATATCCCAAACATGTTCTTACACTAGCTCTCATAAT-GTGGCC
1 GATG-CATATCCCAGACATG-TCTTACACTAGCTCTCAT-CTCGAGGCT
* * *
69760348 GGTGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATATCCCAGACATGTCTTACACTAGC
69760379 GCACAAATAT
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 53 0.52
47 26 0.26
48 21 0.21
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (46 bp):
GATGCATATCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCT
Found at i:69760325 original size:94 final size:92
Alignment explanation
Indices: 69760208--69760378 Score: 220
Period size: 94 Copynumber: 1.8 Consensus size: 92
69760198 TCATGTAGCC
* * * * *
69760208 GATGCATATCCCAGACATGTCTTACATTGGCT-TACAT-CTCGAGGCTGATGCATGTCCCAGACA
1 GATGCATATCCCAAACATGTCTTACACTAGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGACA
69760271 TGTCTTACACTAGCTCTCATCTCAATAAT
64 TGTCTTACACTAGCTCTCATCTCAATAAT
* * *
69760300 GATGACATATCCCAAACATGTTCTTACACTAGCTCTCATAATGTGGCCGGTGCATGTCCTAGACA
1 GATG-CATATCCCAAACATG-TCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
69760365 TGTCTTACACTAGC
64 TGTCTTACACTAGC
69760379 GCACAAATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.21
94 47 0.70
95 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (92 bp):
GATGCATATCCCAAACATGTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTCTCATCTCAATAAT
Found at i:69764220 original size:23 final size:23
Alignment explanation
Indices: 69764194--69764252 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
69764184 ATCACAACGT
* * *
69764194 AGTTGCTAATAGTAATGTAGCAA
1 AGTTACTAATAGTAACGCAGCAA
**
69764217 AGTTTTTAATAGTAACGCAGCAA
1 AGTTACTAATAGTAACGCAGCAA
*
69764240 AGCTACTAATAGT
1 AGTTACTAATAGT
69764253 GGTAAACGTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (23 bp):
AGTTACTAATAGTAACGCAGCAA
Found at i:69781603 original size:26 final size:25
Alignment explanation
Indices: 69781526--69781621 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
69781516 CCCTTTTAAT
*
69781526 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
69781551 AACTGGGGCAAAGCCCTTTTCTGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
69781576 AACTGGGGCAAAGCCCTTTTTCGGTA
1 AACTGGGGCAAAGCCC-TTTTCGGTA
*
69781602 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69781622 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
25 43 0.65
26 23 0.35
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:69781614 original size:51 final size:50
Alignment explanation
Indices: 69781526--69781621 Score: 165
Period size: 51 Copynumber: 1.9 Consensus size: 50
69781516 CCCTTTTAAT
*
69781526 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCTGTA
1 AACTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTTCTGTA
*
69781576 AACTGGGGCAAAGCCCTTTTTCGGTAAACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCC-TTTTCGATAAACTAGGGCAAAGCCCTTTT
69781622 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
50 16 0.37
51 27 0.63
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCGATAAACTAGGGCAAAGCCCTTTTCTGTA
Found at i:69781685 original size:11 final size:11
Alignment explanation
Indices: 69781669--69781717 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
69781659 TATATGAATT
69781669 TATCATGTGCA
1 TATCATGTGCA
*
69781680 TATCA--TACA
1 TATCATGTGCA
69781689 TATCATGTGCA
1 TATCATGTGCA
69781700 TATCATGT-CA
1 TATCATGTGCA
*
69781710 AATCATGT
1 TATCATGT
69781718 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:69783311 original size:40 final size:40
Alignment explanation
Indices: 69783267--69783458 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
69783257 ATAACCACAA
* * *
69783267 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
69783307 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
69783347 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
69783387 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
69783427 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
69783459 CATTCAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 136 0.97
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:69783374 original size:80 final size:80
Alignment explanation
Indices: 69783247--69783457 Score: 239
Period size: 80 Copynumber: 2.6 Consensus size: 80
69783237 TCTTCGAAAT
* * * * * * * *
69783247 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCA
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGC-ACTAGCA
*
69783310 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGAC
** * *
69783326 TTAGCCCGGAT-TTATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCA
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCACTAGCA
*
69783390 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGAC
* *
69783406 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
69783458 TCATTCAAAT
Statistics
Matches: 111, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 7 0.06
80 98 0.88
81 6 0.05
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCACTAGCAC
AAATGCCTTCGGGAC
Found at i:69788038 original size:21 final size:21
Alignment explanation
Indices: 69788012--69788057 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
69788002 GGAATCAAAC
69788012 AAGAAAATGAAAGAGAGAAAA
1 AAGAAAATGAAAGAGAGAAAA
* * * *
69788033 AAGAAATTGAGAGTGAGTAAA
1 AAGAAAATGAAAGAGAGAAAA
69788054 AAGA
1 AAGA
69788058 GAGTGAGTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.26, T:0.11
Consensus pattern (21 bp):
AAGAAAATGAAAGAGAGAAAA
Found at i:69790665 original size:27 final size:27
Alignment explanation
Indices: 69790627--69790681 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
69790617 TTTTAGCGTT
69790627 TGAGAGCTTAATTGCGAAAAAGGACTA
1 TGAGAGCTTAATTGCGAAAAAGGACTA
*
69790654 TGAGAGCTTAATTGTGAAAAAGGACTA
1 TGAGAGCTTAATTGCGAAAAAGGACTA
69790681 T
1 T
69790682 ATCGCATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.25
Consensus pattern (27 bp):
TGAGAGCTTAATTGCGAAAAAGGACTA
Found at i:69797878 original size:45 final size:45
Alignment explanation
Indices: 69797804--69798009 Score: 146
Period size: 46 Copynumber: 4.5 Consensus size: 45
69797794 AAGAAAGCCT
* * **
69797804 TAATGTCTTTCATCCATGGTCTT-TCTTATTTCCATTGTGATGCCA
1 TAATGTCTTTCAACAATGGTCTTAT-TTATTTCCATCATGATGCCA
* * * *
69797849 TAATATCTTTCAACTATGGTCTTATTTATTTCTATCATGTTGCCA
1 TAATGTCTTTCAACAATGGTCTTATTTATTTCCATCATGATGCCA
* * * * *
69797894 TAGTGTCTTTCAACAATGGTCGTATCTATTTTCCGTCAT-ATTGTCA
1 TAATGTCTTTCAACAATGGTCTTATTTA-TTTCCATCATGA-TGCCA
* ** * * ** * * *
69797940 TAGTGTCTTTCAATTATGGTTTTATTCATTTTCTGTCTTGTTTCCA
1 TAATGTCTTTCAACAATGGTCTTATTTA-TTTCCATCATGATGCCA
*
69797986 TAGTGTCTTTCAACAATGGTCTTA
1 TAATGTCTTTCAACAATGGTCTTA
69798010 CACGTTTGGA
Statistics
Matches: 127, Mismatches: 30, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
45 59 0.46
46 68 0.54
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (45 bp):
TAATGTCTTTCAACAATGGTCTTATTTATTTCCATCATGATGCCA
Found at i:69797952 original size:46 final size:45
Alignment explanation
Indices: 69797854--69798009 Score: 172
Period size: 46 Copynumber: 3.4 Consensus size: 45
69797844 TGCCATAATA
* * *
69797854 TCTTTCAACTATGGTCTTATT-TATTTCTATCATGTTGCCATAGTG
1 TCTTTCAACAATGGTCTTATTAT-TTTCTGTCATGTTGTCATAGTG
* * *
69797899 TCTTTCAACAATGGTCGTATCTATTTTCCGTCATATTGTCATAGTG
1 TCTTTCAACAATGGTCTTAT-TATTTTCTGTCATGTTGTCATAGTG
** * *
69797945 TCTTTCAATTATGGTTTTATTCATTTTCTGTCTTGTT-TCCATAGTG
1 TCTTTCAACAATGGTCTTATT-ATTTTCTGTCATGTTGT-CATAGTG
69797991 TCTTTCAACAATGGTCTTA
1 TCTTTCAACAATGGTCTTA
69798010 CACGTTTGGA
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
45 20 0.22
46 70 0.77
47 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (45 bp):
TCTTTCAACAATGGTCTTATTATTTTCTGTCATGTTGTCATAGTG
Found at i:69798071 original size:45 final size:45
Alignment explanation
Indices: 69797983--69798095 Score: 140
Period size: 45 Copynumber: 2.5 Consensus size: 45
69797973 TGTCTTGTTT
* * *
69797983 CCATAGTGTCTTTCAACAATGGTCTTACACGTTTGGATCGTGATG
1 CCATAGTGTCTTTCAACTATGGTCTTACACGTTTGAATCGTGATA
* *
69798028 TCATAGCT-TCTTTCAACTATGGTCTTACTCGTTTGAA-CTGTGATA
1 CCATAG-TGTCTTTCAACTATGGTCTTACACGTTTGAATC-GTGATA
*
69798073 CCATAGTGTCTTTCAGCTATGGT
1 CCATAGTGTCTTTCAACTATGGT
69798096 TGATACCATA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 2 0.03
45 55 0.95
46 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (45 bp):
CCATAGTGTCTTTCAACTATGGTCTTACACGTTTGAATCGTGATA
Found at i:69805912 original size:5 final size:5
Alignment explanation
Indices: 69805902--69805928 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
69805892 CCCCATATTC
69805902 TTTCT TTTCT TTTCT TTTCT TTTCT TT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TT
69805929 AATTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Found at i:69805934 original size:10 final size:10
Alignment explanation
Indices: 69805902--69805951 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
69805892 CCCCATATTC
*
69805902 TTTCTTTTCT
1 TTTCTTTTAT
*
69805912 TTTCTTTTCT
1 TTTCTTTTAT
*
69805922 TTTC-TTTAA
1 TTTCTTTTAT
69805931 TTT-TTTTAT
1 TTTCTTTTAT
69805940 TTTCTTTTAT
1 TTTCTTTTAT
69805950 TT
1 TT
69805952 ATTTATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 13 0.37
10 22 0.63
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTCTTTTAT
Found at i:69805942 original size:18 final size:18
Alignment explanation
Indices: 69805916--69805959 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
69805906 TTTTCTTTTC
*
69805916 TTTTCTTTTCTTTAATTT
1 TTTTATTTTCTTTAATTT
*
69805934 TTTTATTTTCTTTTATTT
1 TTTTATTTTCTTTAATTT
*
69805952 ATTTATTT
1 TTTTATTT
69805960 ATTTACTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTATTTTCTTTAATTT
Found at i:69811695 original size:7 final size:7
Alignment explanation
Indices: 69811680--69811732 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
69811670 GATAAGGTCG
*
69811680 AACCTTA
1 AACCCTA
69811687 AACCCTA
1 AACCCTA
*
69811694 AACCTTA
1 AACCCTA
***
69811701 AAATTTA
1 AACCCTA
69811708 AACCCTA
1 AACCCTA
69811715 AACCCTA
1 AACCCTA
*
69811722 AACCCTG
1 AACCCTA
69811729 AACC
1 AACC
69811733 TCCATCAAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.21
Consensus pattern (7 bp):
AACCCTA
Found at i:69811710 original size:21 final size:21
Alignment explanation
Indices: 69811684--69811723 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
69811674 AGGTCGAACC
*
69811684 TTAAACCCTAAACCTTAAAAT
1 TTAAACCCTAAACCCTAAAAT
69811705 TTAAACCCTAAACCCTAAA
1 TTAAACCCTAAACCCTAAA
69811724 CCCTGAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (21 bp):
TTAAACCCTAAACCCTAAAAT
Found at i:69814291 original size:27 final size:27
Alignment explanation
Indices: 69814261--69814317 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
69814251 AGCAAACCTG
*
69814261 CCAGTATCAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
69814288 CCAGTAACAGTATATGTGGCGAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
69814315 CCA
1 CCA
69814318 ATATAATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:69817137 original size:13 final size:13
Alignment explanation
Indices: 69817119--69817143 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69817109 GTTTGGCAAT
69817119 GCTTTTGAAAAGC
1 GCTTTTGAAAAGC
69817132 GCTTTTGAAAAG
1 GCTTTTGAAAAG
69817144 TACTGTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (13 bp):
GCTTTTGAAAAGC
Found at i:69817181 original size:26 final size:26
Alignment explanation
Indices: 69817120--69817181 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
69817110 TTTGGCAATG
69817120 CTTTTGAAAAGCGCTTTTGAAAAGTA
1 CTTTTGAAAAGCGCTTTTGAAAAGTA
* * *
69817146 CTGTGGAAAAGTGCTTTT-AAGAAGTA
1 CTTTTGAAAAGCGCTTTTGAA-AAGTA
*
69817172 CTTTTAAAAA
1 CTTTTGAAAA
69817182 AATTGGTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
25 2 0.07
26 27 0.93
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (26 bp):
CTTTTGAAAAGCGCTTTTGAAAAGTA
Found at i:69817490 original size:12 final size:12
Alignment explanation
Indices: 69817473--69817527 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
69817463 ATAACTATTA
69817473 AATATTTTAATT
1 AATATTTTAATT
**
69817485 AATATTTTAAAA
1 AATATTTTAATT
69817497 AATATTTT--TT
1 AATATTTTAATT
69817507 -AT-TTTTAATT
1 AATATTTTAATT
69817517 AATGATTTTAA
1 AAT-ATTTTAA
69817528 CACATTTGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
8 4 0.12
9 2 0.06
10 2 0.06
11 2 0.06
12 18 0.53
13 6 0.18
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (12 bp):
AATATTTTAATT
Found at i:69817494 original size:21 final size:22
Alignment explanation
Indices: 69817444--69817495 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
69817434 TATATAAACT
69817444 ATATTTTAAATATTTAAATATA
1 ATATTTTAAATATTTAAATATA
*
69817466 ACTA--TTAAATATTTTAAT-TA
1 A-TATTTTAAATATTTAAATATA
69817486 ATATTTTAAA
1 ATATTTTAAA
69817496 AAATATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 2 0.08
20 3 0.12
21 18 0.69
22 1 0.04
23 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATTTTAAATATTTAAATATA
Found at i:69822738 original size:47 final size:47
Alignment explanation
Indices: 69822674--69822842 Score: 266
Period size: 47 Copynumber: 3.6 Consensus size: 47
69822664 GCATTGGCAC
* * *
69822674 TAAGACAAGGATTCCATGTAATACCATGTTTGGAACATGGTATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
69822721 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
69822768 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
69822815 TAAGATAAGGATATCATGTAAGGCCATG
1 TAAGACAAGGATACCATGTAAGACCATG
69822843 CCAAGGCATG
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:69822886 original size:54 final size:56
Alignment explanation
Indices: 69822821--69822967 Score: 192
Period size: 54 Copynumber: 2.7 Consensus size: 56
69822811 TTGGTAAGAT
* *
69822821 AAGGATATCATGTAAGGCCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGG-C
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGAA
* * * * *
69822875 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATATGGAA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGAA
**
69822931 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTG
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
69822968 GGGAGATACC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
54 40 0.51
55 35 0.44
56 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (56 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTACTATAAGGAA
Found at i:69822949 original size:55 final size:54
Alignment explanation
Indices: 69822829--69822967 Score: 172
Period size: 55 Copynumber: 2.6 Consensus size: 54
69822819 ATAAGGATAT
* * *
69822829 CATGTAAGGCCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAAC
* * * * **
69822883 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATATGGAAAAGG-TCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGG-AAAGGAAAC
69822938 CATGTAAGACCATGCCAAGGCATGGCATTG
1 CATGTAAGACCATGCCAAGGCATGGCATTG
69822968 GGGAGATACC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
54 33 0.46
55 35 0.49
56 4 0.06
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAGGAAAC
Found at i:69833542 original size:27 final size:27
Alignment explanation
Indices: 69833512--69833689 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
69833502 ATATTGAGCC
* *
69833512 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
69833539 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
69833566 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
69833594 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
69833621 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
69833648 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
69833675 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69833690 GTACAATTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69833651 original size:82 final size:81
Alignment explanation
Indices: 69833533--69833688 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
69833523 TGCTATATAA
* * *
69833533 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
69833598 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
69833615 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
69833679 CACTTAGTGC
65 CACTTAGTGC
69833689 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69841425 original size:27 final size:27
Alignment explanation
Indices: 69841395--69841572 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
69841385 ATATTGAGCC
* * *
69841395 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
69841422 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
69841449 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
69841477 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
69841504 CGCACACTTAGTG-TATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
69841531 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
69841558 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69841573 GTACAATTTA
Statistics
Matches: 121, Mismatches: 27, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
27 98 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:69841488 original size:55 final size:55
Alignment explanation
Indices: 69841395--69841572 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
69841385 ATATTGAGCC
* * *
69841395 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
69841449 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
69841504 CGCACACTTAGTG-TATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
69841558 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69841573 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:69845129 original size:43 final size:43
Alignment explanation
Indices: 69845079--69845233 Score: 177
Period size: 43 Copynumber: 3.6 Consensus size: 43
69845069 GTTATCGAGA
* *
69845079 TGTGATTACATGTAAGACCATGTATGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
69845122 TTTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*** * * *
69845165 TGTGATTTTGTGTAAGACCTTGTCTGGGATAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
69845207 ATGTGATAACATGTAAGACCATATCTG
1 -TGTGATTACATGTAAGACCATGTCTG
69845234 AGATATGGCA
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 2 0.02
43 91 0.98
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:69849518 original size:24 final size:24
Alignment explanation
Indices: 69849486--69849531 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
69849476 ATGAATCCGC
*
69849486 AAAAGCTGAAATACCGAAAAGTCA
1 AAAAACTGAAATACCGAAAAGTCA
**
69849510 AAAAACTGAAATGTCGAAAAGT
1 AAAAACTGAAATACCGAAAAGT
69849532 TGAAGGTTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.13, G:0.17, T:0.15
Consensus pattern (24 bp):
AAAAACTGAAATACCGAAAAGTCA
Found at i:69849780 original size:29 final size:28
Alignment explanation
Indices: 69849747--69849842 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 28
69849737 GTGAGCATGA
* *
69849747 ATATGCATGTGATTTGGGCCTAATTGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * *
69849776 ATATGAATATCAATTGGGCCTGATGGGCC
1 ATATGAATGT-GATTGGGCCTAATGGGCC
* *
69849805 ATATAAATGAGATTGGGCC-AAGTGGGCC
1 ATATGAATGTGATTGGGCCTAA-TGGGCC
*
69849833 ATATGCATGT
1 ATATGAATGT
69849843 ATGTAGGGGT
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
27 1 0.02
28 21 0.40
29 29 0.56
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:69851264 original size:29 final size:29
Alignment explanation
Indices: 69851226--69851282 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
69851216 CATCGGGTTA
69851226 AATATTCTCTCTAAATACTTTCATAAAAT
1 AATATTCTCTCTAAATACTTTCATAAAAT
69851255 AATATTCTCTCTAAATACTTTCATAAAA
1 AATATTCTCTCTAAATACTTTCATAAAA
69851283 CATCGGGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (29 bp):
AATATTCTCTCTAAATACTTTCATAAAAT
Found at i:69865493 original size:48 final size:48
Alignment explanation
Indices: 69865427--69865721 Score: 518
Period size: 48 Copynumber: 6.1 Consensus size: 48
69865417 GTGGAAATTG
69865427 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
69865475 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATTTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
69865523 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
69865571 ATGTATGAGATATGTATATGTGGTGAAGCCGAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
69865621 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
69865669 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
69865717 ATGTA
1 ATGTA
69865722 GGCGATGTGT
Statistics
Matches: 234, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
48 187 0.80
49 4 0.02
50 43 0.18
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:69865678 original size:98 final size:98
Alignment explanation
Indices: 69865430--69865718 Score: 510
Period size: 98 Copynumber: 3.0 Consensus size: 98
69865420 GAAATTGATG
*
69865430 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
* *
69865495 TGGTAAAGCCGAATGGCTAATTTG-AA-ATATG
66 TGGTAAAGCCGAATGGCTAATGTGAAATATATA
69865526 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
* *
69865591 TGGTGAAGCCGAATGGTTAATGTGAAATATATA
66 TGGTAAAGCCGAATGGCTAATGTGAAATATATA
69865624 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
*
69865689 TGGTAAAGCCGAATGGCTAGTGTGAAATAT
66 TGGTAAAGCCGAATGGCTAATGTGAAATAT
69865719 GTAGGCGATG
Statistics
Matches: 183, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
96 85 0.46
97 2 0.01
98 96 0.52
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (98 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAATATATA
Found at i:69865684 original size:146 final size:144
Alignment explanation
Indices: 69865427--69865721 Score: 518
Period size: 146 Copynumber: 2.0 Consensus size: 144
69865417 GTGGAAATTG
*
69865427 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAAGTAT
*
69865492 ATGTGGTAAAGCCGAATGGCTAATTTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
69865557 GGCTAATGTGAAAT
131 GGCTAATGTGAAAT
* * *
69865571 ATGTATGAGATATGTATATGTGGTGAAGCCGAATGGTTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATAAGT
69865636 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
64 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
*
69865701 ATGGCTAGTGTGAAAT
129 ATGGCTAATGTGAAAT
69865717 ATGTA
1 ATGTA
69865722 GGCGATGTGT
Statistics
Matches: 143, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
144 42 0.29
145 2 0.01
146 99 0.69
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (144 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAAGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAAT
Found at i:69865779 original size:146 final size:145
Alignment explanation
Indices: 69865427--69865760 Score: 471
Period size: 146 Copynumber: 2.3 Consensus size: 145
69865417 GTGGAAATTG
* * * * * *
69865427 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATAAGT
1 ATGTAGGAGATATGTATATGTGGT-GAGCCGAATGCCAAATGTGAAATATATATATGAGATATGT
*
69865490 ATATGTGGTAAAGCCGAATGGCTAATTTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
65 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
69865555 ATGGCTAATGTGAAAT
130 ATGGCTAATGTGAAAT
* ***
69865571 ATGTATGAGATATGTATATGTGGTGAAGCCGAATGGTTAATGTGAAATATATATATGAGATATGT
1 ATGTAGGAGATATGTATATGTGGTG-AGCCGAATGCCAAATGTGAAATATATATATGAGATATGT
69865636 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
65 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
*
69865701 ATGGCTAGTGTGAAAT
130 ATGGCTAATGTGAAAT
* * *
69865717 ATGTAGGCGATGTGTGTAT-T-GTG-GCCGAATGACCAAATGTGAAA
1 ATGTAGGAGATATGTATATGTGGTGAGCCGAATG-CCAAATGTGAAA
69865761 GGTGTGTATT
Statistics
Matches: 173, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
142 8 0.05
143 9 0.05
144 44 0.25
145 3 0.02
146 109 0.63
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (145 bp):
ATGTAGGAGATATGTATATGTGGTGAGCCGAATGCCAAATGTGAAATATATATATGAGATATGTA
TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAAT
Found at i:69870934 original size:43 final size:43
Alignment explanation
Indices: 69870884--69871041 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 43
69870874 GTTATCGAGA
* * * *
69870884 TGTGATTACATGTAAGACCATGTCTGGAACATTGGAATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * *
69870927 TCTGATTACGTGTAAGACCATATCTGGGACATTGGCATCATAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
* * *
69870970 TGTGATTTCATGTAAGA-CACTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCA-TATCTGGGACATTGGCATCGTAT
*
69871012 ATGTGATAACATGTAAGACCATATCTGGGA
1 -TGTGATTACATGTAAGACCATATCTGGGA
69871042 TATGACATTG
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 4 0.04
43 90 0.94
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTAT
Found at i:69871030 original size:86 final size:86
Alignment explanation
Indices: 69870884--69871041 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 86
69870874 GTTATCGAGA
* * * *
69870884 TGTGATTACATGTAAGACCATGTCTGGAACATTGGAATTGTATTCTGATTACGTGTAAGACCATA
1 TGTGATTACATGTAAGACCATGTCTGGAACAGTGGAATCGTATTCTGATAACATGTAAGACCATA
69870949 TCTGGGACATTGGCATCATAT
66 TCTGGGACATTGGCATCATAT
* * * *
69870970 TGTGATTTCATGTAAGA-CACTGTCTGGGACAGTGGCATCG-ATATGTGATAACATGTAAGACCA
1 TGTGATTACATGTAAGACCA-TGTCTGGAACAGTGGAATCGTAT-TCTGATAACATGTAAGACCA
69871033 TATCTGGGA
64 TATCTGGGA
69871042 TATGACATTG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 4 0.06
86 58 0.94
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (86 bp):
TGTGATTACATGTAAGACCATGTCTGGAACAGTGGAATCGTATTCTGATAACATGTAAGACCATA
TCTGGGACATTGGCATCATAT
Found at i:69874344 original size:21 final size:21
Alignment explanation
Indices: 69874318--69874360 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
69874308 ATGGAGCAAA
*
69874318 GTTTTTCATCCTATCTACTAT
1 GTTTTTCATCCTACCTACTAT
69874339 GTTTTTCATCCTACCTACTAT
1 GTTTTTCATCCTACCTACTAT
69874360 G
1 G
69874361 CGAGTGGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.07, T:0.49
Consensus pattern (21 bp):
GTTTTTCATCCTACCTACTAT
Found at i:69876341 original size:22 final size:19
Alignment explanation
Indices: 69876313--69876354 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
69876303 TGATAATCTT
69876313 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
69876335 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
69876354 T
1 T
69876355 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:69878852 original size:68 final size:67
Alignment explanation
Indices: 69878780--69878929 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
69878770 CATCATGTGT
* * * *
69878780 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
69878842 ATGTAG
62 ATGTAG
** * *
69878848 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
69878913 AG
66 AG
69878915 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
69878930 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:69878885 original size:64 final size:64
Alignment explanation
Indices: 69878804--69878987 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
69878794 AGACATTATG
* *
69878804 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
69878868 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
69878933 AA
63 AA
* * * *
69878935 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
69878988 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69883273 original size:68 final size:67
Alignment explanation
Indices: 69883201--69883350 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
69883191 CATCATGTGT
* * * *
69883201 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
69883263 ATGTAG
62 ATGTAG
** * *
69883269 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
69883334 AG
66 AG
69883336 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
69883351 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:69883306 original size:64 final size:64
Alignment explanation
Indices: 69883225--69883408 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
69883215 AGACATTATG
* *
69883225 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
69883289 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
69883354 AA
63 AA
* * * *
69883356 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
69883409 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69885859 original size:14 final size:15
Alignment explanation
Indices: 69885828--69885858 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
69885818 TAGGATTAAG
69885828 TTAATTAGGAATTTT
1 TTAATTAGGAATTTT
69885843 TTAATTAGGAATTTT
1 TTAATTAGGAATTTT
69885858 T
1 T
69885859 ATTCTCGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (15 bp):
TTAATTAGGAATTTT
Found at i:69890046 original size:40 final size:40
Alignment explanation
Indices: 69890002--69890077 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
69889992 TGGTGCCTCA
69890002 TATAGCCAAAGCTA-TTCCAACTCGCACACTTAGTGCTATT
1 TATAGCCAAAGCTATTTCCAAC-CGCACACTTAGTGCTATT
* **
69890042 TATAGCCGAAGCTATTTTGAACCGCACACTTAGTGC
1 TATAGCCAAAGCTATTTCCAACCGCACACTTAGTGC
69890078 CGAACATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 27 0.84
41 5 0.16
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (40 bp):
TATAGCCAAAGCTATTTCCAACCGCACACTTAGTGCTATT
Found at i:69891176 original size:20 final size:20
Alignment explanation
Indices: 69891153--69891191 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69891143 GTACACGTCC
69891153 GTGTACTTTGAGACACGCCG
1 GTGTACTTTGAGACACGCCG
* *
69891173 GTGTGCTTTGGGACACGCC
1 GTGTACTTTGAGACACGCC
69891192 CATGTGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.26, G:0.33, T:0.26
Consensus pattern (20 bp):
GTGTACTTTGAGACACGCCG
Found at i:69891197 original size:20 final size:20
Alignment explanation
Indices: 69891158--69891197 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69891148 CGTCCGTGTA
**
69891158 CTTTGAGACACGCCGGTGTG
1 CTTTGAGACACGCCCATGTG
*
69891178 CTTTGGGACACGCCCATGTG
1 CTTTGAGACACGCCCATGTG
69891198 GAAATAATTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.25
Consensus pattern (20 bp):
CTTTGAGACACGCCCATGTG
Found at i:69893535 original size:28 final size:28
Alignment explanation
Indices: 69893470--69893568 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
69893460 CATGAGATTG
* * *
69893470 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
69893499 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
69893527 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
69893555 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69893569 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:69908483 original size:93 final size:93
Alignment explanation
Indices: 69908371--69908541 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69908361 GCCCCTAAGT
* *
69908371 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
69908435 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
69908464 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
69908529 TGAGTTCGGATGC
66 CGAGTTCGGATGC
69908542 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69908536 original size:46 final size:46
Alignment explanation
Indices: 69908366--69908538 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
69908356 AACCCGCCCC
* *
69908366 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
*
69908412 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
69908460 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
69908505 TAAGTGAACTCAGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69908539 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.53
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:69917546 original size:13 final size:13
Alignment explanation
Indices: 69917528--69917554 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69917518 CACAAACCAT
69917528 AAAATTTTCACAC
1 AAAATTTTCACAC
69917541 AAAATTTTCACAC
1 AAAATTTTCACAC
69917554 A
1 A
69917555 TACTAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:69924524 original size:22 final size:19
Alignment explanation
Indices: 69924499--69924550 Score: 50
Period size: 22 Copynumber: 2.5 Consensus size: 19
69924489 CATCACAAAA
69924499 CTCATGAATTCATCAATGGAAT
1 CTCATGAATT-ATCAAT--AAT
*
69924521 CTCATAAAATTATCAATAAT
1 CTCAT-GAATTATCAATAAT
*
69924541 TTCATGAATT
1 CTCATGAATT
69924551 GAAGCATGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 4 0.15
20 7 0.27
22 11 0.42
23 4 0.15
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (19 bp):
CTCATGAATTATCAATAAT
Found at i:69926803 original size:27 final size:26
Alignment explanation
Indices: 69926759--69926810 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69926749 CTCGCTGCAA
*
69926759 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
69926786 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
69926811 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:69930876 original size:30 final size:29
Alignment explanation
Indices: 69930837--69930894 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
69930827 GTAGCCGAAA
69930837 CTAGTTAAATCGCACACTTAGTGCCAAAG
1 CTAGTTAAATCGCACACTTAGTGCCAAAG
69930866 CTAGTTTAAATCGCACACTTAGTGCCAAA
1 CTAG-TTAAATCGCACACTTAGTGCCAAA
69930895 ACTTCCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (29 bp):
CTAGTTAAATCGCACACTTAGTGCCAAAG
Found at i:69938093 original size:29 final size:29
Alignment explanation
Indices: 69938060--69938119 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
69938050 CAAGTAGCCG
69938060 AAGCTAG-TTAAAGCGCACACTTAGTGCCA
1 AAGCTAGTTTAAAGCGCACACTT-GTGCCA
* **
69938089 AAGCTAGTTTAAATCTTACACTTGTGCCA
1 AAGCTAGTTTAAAGCGCACACTTGTGCCA
69938118 AA
1 AA
69938120 ACTTCCTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTTAAAGCGCACACTTGTGCCA
Found at i:69964712 original size:31 final size:31
Alignment explanation
Indices: 69964672--69964755 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
69964662 TCAGTCTTGA
69964672 CATAT-ACTGGGCCGAAGCCTTTTCATAAAC
1 CATATCACTGGGCCGAAGCCTTTTCATAAAC
*
69964702 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAC
*
69964733 CATATCATTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
69964756 ACTGCAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAC
Found at i:69964833 original size:58 final size:58
Alignment explanation
Indices: 69964769--69964885 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
69964759 GCAAACGGTA
69964769 TGGCCCTTAGGCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCCAT
1 TGGCCCTTAGGCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCCAT
69964827 TGGCCCTTAGGCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCCAT
1 TGGCCCTTAGGCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCCAT
69964885 T
1 T
69964886 TCAATATCAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (58 bp):
TGGCCCTTAGGCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCCAT
Found at i:69964883 original size:42 final size:42
Alignment explanation
Indices: 69964837--69964928 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
69964827 TGGCCCTTAG
* ** *
69964837 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69964879 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
69964921 GCCCATTT
1 GCCCATTT
69964929 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:69965144 original size:26 final size:26
Alignment explanation
Indices: 69965076--69965273 Score: 265
Period size: 26 Copynumber: 7.7 Consensus size: 26
69965066 CTTTAATAAT
69965076 TGGGGCA-AAGCCCTTTTCGGTAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAAC
**
69965101 TGGGGCA-AAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAAC
* *
69965126 TAGGGCATAAGCCATTTTCGGTAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAAC
**
69965152 TGGGGCATAAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAAC
*
69965178 TGGGGCATAAGCCCTTTTTGGTAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAAC
* * **
69965204 TGGAGCATAAGCCCCTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAAC
69965230 TGGGGCATAAGCCCTTTTCGGTAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAAC
* *
69965256 TAGGGCATAAGCCTTTTT
1 TGGGGCATAAGCCCTTTT
69965274 GCACTTCCTC
Statistics
Matches: 148, Mismatches: 24, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
25 29 0.20
26 119 0.80
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
TGGGGCATAAGCCCTTTTCGGTAAAC
Found at i:69965184 original size:52 final size:52
Alignment explanation
Indices: 69965076--69965273 Score: 319
Period size: 52 Copynumber: 3.8 Consensus size: 52
69965066 CTTTAATAAT
69965076 TGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAAC
* *
69965126 TAGGGCATAAGCCATTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAAC
* * *
69965178 TGGGGCATAAGCCCTTTTTGGTAAACTGGAGCATAAGCCCCTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAAC
* *
69965230 TGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCTTTTT
1 TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
69965274 GCACTTCCTC
Statistics
Matches: 134, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
50 6 0.04
51 24 0.18
52 104 0.78
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (52 bp):
TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAAC
Found at i:69966111 original size:27 final size:27
Alignment explanation
Indices: 69966076--69966158 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
69966066 GGGCATATTC
* *
69966076 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
69966103 GTCACTTTACCCTACAGGGGCTTTATG
1 GTCACTTTACCCTACAGGGGCTTTACG
*
69966130 GTGACTTTACCCTACAGGGGCTTT-CG
1 GTCACTTTACCCTACAGGGGCTTTACG
69966156 GTC
1 GTC
69966159 TTTTTACCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 3 0.06
27 45 0.92
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:69966240 original size:27 final size:27
Alignment explanation
Indices: 69966210--69966262 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
69966200 GGGTGTTTTG
69966210 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
69966237 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTATAAACCAAGGGTATTTC
69966263 CATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:69966268 original size:27 final size:27
Alignment explanation
Indices: 69966219--69966448 Score: 99
Period size: 27 Copynumber: 8.5 Consensus size: 27
69966209 GGTAAATCTA
69966219 TAAACCAAGGGTATTTCAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
69966246 TAAACCAATGGTATTTCCA-TAATTTT-
1 TAAACCAAGGGTATTT-CAGTAATTTTG
** * *
69966272 TAGAAAGTTAAGGGTATTTCTGTAACTTTG
1 T--AAA-CCAAGGGTATTTCAGTAATTTTG
** * ** *
69966302 TAAATTAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *** * * *
69966329 CAAATTGAGGGTATTTTAGCAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * ** *
69966356 CAAA-CTAGGGTATTTTGGTAATTTTAC
1 TAAACCAAGGGTATTTCAGTAATTTT-G
* * * **
69966383 T-GATCGAGGGTATTTTGGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * *
69966409 TAAACCGATGGTATTTTAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
69966436 TAAATCAAGGGTA
1 TAAACCAAGGGTA
69966449 AAACAGTAAT
Statistics
Matches: 162, Mismatches: 32, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
26 20 0.12
27 117 0.72
28 9 0.06
29 15 0.09
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TAAACCAAGGGTATTTCAGTAATTTTG
Found at i:69966376 original size:53 final size:54
Alignment explanation
Indices: 69966310--69966448 Score: 154
Period size: 53 Copynumber: 2.6 Consensus size: 54
69966300 TGTAAATTAG
* *
69966310 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGCAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGCAATTTTACAAACCGA
** * * **
69966363 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGCAATTTTACAAACCGA
* * ** *
69966417 TGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTA
69966449 AAACAGTAAT
Statistics
Matches: 70, Mismatches: 15, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
53 43 0.61
54 27 0.39
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGCAATTTTACAAACCGA
Found at i:69966447 original size:54 final size:52
Alignment explanation
Indices: 69966219--69966448 Score: 142
Period size: 54 Copynumber: 4.2 Consensus size: 52
69966209 GGTAAATCTA
* * * * *
69966219 TAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCCA-TAATTTT
1 TAAATCAAGGGTATTTTAGTAATTTTGTAAA-CTAGGGTATTT-TAGTAATTTT
* * * *
69966272 TAGAAAGTTAAGGGTATTTCT-GTAACTTTGTAAATTAGGGGTATTTTGGTAATTTT
1 T--AAA-TCAAGGGTATTT-TAGTAATTTTGTAAACTA-GGGTATTTTAGTAATTTT
* ** * ** *
69966328 ACAAATTGAGGGTATTTTAGCAATTTTACAAACTAGGGTATTTTGGTAA-TTT
1 -TAAATCAAGGGTATTTTAGTAATTTTGTAAACTAGGGTATTTTAGTAATTTT
* * * * *
69966380 TACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGATGGTATTTTAGTAATTTT
1 TA--AATCAAGGGTATTTTAGTAATTTTGTAAA-CTAGGGTATTTTAGTAATTTT
69966435 GTAAATCAAGGGTA
1 -TAAATCAAGGGTA
69966449 AAACAGTAAT
Statistics
Matches: 136, Mismatches: 28, Indels: 25
0.72 0.15 0.13
Matches are distributed among these distances:
51 1 0.01
52 3 0.02
53 39 0.29
54 45 0.33
55 10 0.07
56 38 0.28
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (52 bp):
TAAATCAAGGGTATTTTAGTAATTTTGTAAACTAGGGTATTTTAGTAATTTT
Found at i:69966537 original size:27 final size:27
Alignment explanation
Indices: 69966310--69966543 Score: 184
Period size: 27 Copynumber: 8.7 Consensus size: 27
69966300 TGTAAATTAG
* *
69966310 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
69966337 GGGTATTTTAGCAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTATAAATCGA
*
69966363 GGGTATTTTGGTAATTTTACT-GATCGA
1 GGGTATTTTGGTAATTTTA-TAAATCGA
* *
69966390 GGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
69966417 TGGTATTTTAGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
***** *
69966444 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
69966471 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
69966498 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*
69966525 GGGTACTTTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
69966544 CAATTTAAGG
Statistics
Matches: 172, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 20 0.12
27 152 0.88
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:69973065 original size:4 final size:4
Alignment explanation
Indices: 69973056--69973082 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
69973046 TATAAATATT
69973056 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
69973083 TGTTTTGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:69973637 original size:78 final size:80
Alignment explanation
Indices: 69973462--69973646 Score: 245
Period size: 78 Copynumber: 2.4 Consensus size: 80
69973452 AAATTAAAGA
** * *
69973462 TAAAAT-AAATCCGTTTCAGGATTGATTTCCACTGTTCAACGATTCTTTTCCAAAATTTTGATTT
1 TAAAATAAAATCCGTTTTGGGATTGATTCCCACCGTTCAACGATTCTTTTCCAAAATTTTGATTT
69973526 ATTTCCAAAAACGAG
66 ATTTCCAAAAACGAG
*
69973541 TAAAATAAAATCCGTTTTGGGATTGATTCCCGCCGTTCAACGATT-TTATTCC-AAA-TTTGATT
1 TAAAATAAAATCCGTTTTGGGATTGATTCCCACCGTTCAACGATTCTT-TTCCAAAATTTTGA-T
* *
69973603 TTATTTCC-GAAATGAG
64 TTATTTCCAAAAACGAG
*
69973619 TAAAATAAAATCCATTTTGGGATTGATT
1 TAAAATAAAATCCGTTTTGGGATTGATT
69973647 TTTCTTCCAA
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
78 38 0.40
79 20 0.21
80 37 0.39
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (80 bp):
TAAAATAAAATCCGTTTTGGGATTGATTCCCACCGTTCAACGATTCTTTTCCAAAATTTTGATTT
ATTTCCAAAAACGAG
Found at i:69973704 original size:63 final size:62
Alignment explanation
Indices: 69973584--69973709 Score: 180
Period size: 63 Copynumber: 2.0 Consensus size: 62
69973574 CGTTCAACGA
* *
69973584 TTTTATTCCAAATTTGATTTTATTTCCGAAATGAGTAAAATAAAATCCATTTTGGGATTGAT
1 TTTTATTCCAAATTTGATTTTATTTCCAAAATGAGTAAAATAAAATCCATTTCGGGATTGAT
* ** * *
69973646 TTTTCTTCCAAATTTTTTTTTATTTCCAAAAATGAGTAAAATAATATCCGTTTCGGGATTGAT
1 TTTTATTCCAAATTTGATTTTATTTCC-AAAATGAGTAAAATAAAATCCATTTCGGGATTGAT
69973709 T
1 T
69973710 CTCGCGATTC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
62 24 0.43
63 32 0.57
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (62 bp):
TTTTATTCCAAATTTGATTTTATTTCCAAAATGAGTAAAATAAAATCCATTTCGGGATTGAT
Found at i:69973830 original size:86 final size:85
Alignment explanation
Indices: 69973684--69973991 Score: 270
Period size: 86 Copynumber: 3.6 Consensus size: 85
69973674 AAAATGAGTA
* * * * * * * ***
69973684 AAATAATATCCGTTTCGGGATTGATTCTCGCGATTCAA-CAGATTTATTACATTTTGATTTTGTT
1 AAATAAAATCCATTTTGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTT-ATTTTGTT
*
69973748 GCCAAAAACGAGAAATTAAATT
65 -CCAAAAATGAGAAATTAAATT
69973770 AAATAAAATCCATTTTGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTTATTTTGTTT
1 AAATAAAATCCATTTTGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTTATTTTG-TT
69973835 CCAAAAATGAGAAATTAAATT
65 CCAAAAATGAGAAATTAAATT
* *** ***
69973856 AAATTAAATATGTTTTGGGATTTATTCTCGTTGTTTAATAAGATTT-TATTTGATTTTATTTTGT
1 AAATAAAATCCATTTTGGGATTTATTCTCGCCATTTAATAAGATTTAT-TTTG-TTTTATTTTGT
* * *
69973920 T-TACAAATTAG-AATTAAATT
64 TCCAAAAATGAGAAATTAAATT
* * * *
69973940 AAATAAAAT--ATGTTTCAGGAGTTATTCCCACCATTTAAT-AGATTTTATTTTG
1 AAATAAAATCCAT-TTT-GGGATTTATTCTCGCCATTTAATAAGA-TTTATTTTG
69973992 ATATAATTTT
Statistics
Matches: 184, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
82 1 0.01
83 6 0.03
84 40 0.22
85 9 0.05
86 103 0.56
87 25 0.14
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.44
Consensus pattern (85 bp):
AAATAAAATCCATTTTGGGATTTATTCTCGCCATTTAATAAGATTTATTTTGTTTTATTTTGTTC
CAAAAATGAGAAATTAAATT
Found at i:69978822 original size:47 final size:49
Alignment explanation
Indices: 69978747--69978881 Score: 159
Period size: 47 Copynumber: 2.8 Consensus size: 49
69978737 ATAGGGTAAG
* * *
69978747 ATGCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCAT-ATATCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATATCA
* * * * *
69978795 A-GTCGATGCCATGTCCCAGACATGGTCTTATACTAGC-CCTCGTCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATATCA
* *
69978842 ATGCCAATTCCATGTCCCAGACATGGTCTTACACTAGCTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
69978882 TCACAAATGA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 2 0.03
47 36 0.50
48 33 0.46
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (49 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATATCA
Found at i:69979440 original size:23 final size:23
Alignment explanation
Indices: 69979413--69979457 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
69979403 CACATTAATC
69979413 CTTTTAGGTGTTTTCATGCTAAA
1 CTTTTAGGTGTTTTCATGCTAAA
69979436 CTTTTAGGTGTTTTCATGCTAA
1 CTTTTAGGTGTTTTCATGCTAA
69979458 CACCTTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.13, G:0.18, T:0.49
Consensus pattern (23 bp):
CTTTTAGGTGTTTTCATGCTAAA
Found at i:69981290 original size:20 final size:20
Alignment explanation
Indices: 69981249--69981290 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
69981239 CAATAGACAA
*
69981249 ATGTAATATTCTTGTATTTC
1 ATGTAATATTCTTGTATGTC
69981269 ATGTAATATTCTT-TCATGTC
1 ATGTAATATTCTTGT-ATGTC
69981289 AT
1 AT
69981291 ATTTCCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.52
Consensus pattern (20 bp):
ATGTAATATTCTTGTATGTC
Found at i:69985712 original size:68 final size:64
Alignment explanation
Indices: 69985509--69985920 Score: 182
Period size: 68 Copynumber: 6.2 Consensus size: 64
69985499 TATAGTTCGT
* * * * * * *
69985509 CTCTCTTGTACGCATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGT-TTATCTCGTA
1 CTCTCTTGT-CACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACA-TAATATCTTGTA
69985571 G
64 G
* * * * * * * **
69985572 CTCTATTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACAT-ATATCCCG
1 CTCTCTTGTC-ACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACATAATATCTTG
69985636 TAG
62 TAG
*
69985639 CTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGGGACCTAGCTACATCATAATATCTTG
1 CTCTCTTGTC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCT--A-CATAATATCTTG
69985704 TAG
62 TAG
* * * ** * **
69985707 CTCTCTTGTACACATGATGTGCAC-TCAGCA-CTATACATGTGACCTAGCTACATACCATC-TGT
1 CTCTCTTGT-CACATGGTGTACACAT-AGTATC-ACCCATGCGACCTAGCTACATAATATCTTGT
*
69985769 AT
63 AG
* ** * * *
69985771 CATCCAATCTT-TC-CGAAGGT-T-CAACCGAGGAACCACGCATGCGACCTAGCTACAT-ATATC
1 C-T-C--TCTTGTCAC-ATGGTGTAC-ACATA-GTATCACCCATGCGACCTAGCTACATAATATC
**
69985831 CCGTAG
59 TTGTAG
* *
69985837 CTCTCTTTTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTG
1 CTCTCTTGTC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCT--A-CATAATATCTTG
69985902 TAG
62 TAG
*
69985905 CTCTCTTTTACACATG
1 CTCTCTTGT-CACATG
69985921 ATGTGCACTC
Statistics
Matches: 267, Mismatches: 49, Indels: 61
0.71 0.13 0.16
Matches are distributed among these distances:
62 5 0.02
63 17 0.06
64 53 0.20
65 22 0.08
66 56 0.21
67 38 0.14
68 74 0.28
69 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (64 bp):
CTCTCTTGTCACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATAATATCTTGTAG
Found at i:69985851 original size:198 final size:198
Alignment explanation
Indices: 69985601--69985995 Score: 736
Period size: 198 Copynumber: 2.0 Consensus size: 198
69985591 TCCTTCACTT
69985601 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
*
69985666 GTATCACCCATGGGACCTAGCTACATCATAATATCTTGTAGCTCTCTTGTACACATGATGTGCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATATCTTGTAGCTCTCTTGTACACATGATGTGCAC
*
69985731 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGATTCAAC
69985796 CGA
196 CGA
*
69985799 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTTTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
* *
69985864 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTTTACACATGATGTGCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATATCTTGTAGCTCTCTTGTACACATGATGTGCAC
*
69985929 TCAGCACTATACATGTGACCTTGCTACATACCATCTGTATCATCCAATCTTTCCGAAGATTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGATTCAAC
69985994 CG
196 CG
69985996 GGATTTCTCT
Statistics
Matches: 191, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
198 191 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (198 bp):
GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
GTATCACCCATGCGACCTAGCTACATCATAATATCTTGTAGCTCTCTTGTACACATGATGTGCAC
TCAGCACTATACATGTGACCTAGCTACATACCATCTGTATCATCCAATCTTTCCGAAGATTCAAC
CGA
Found at i:69990724 original size:43 final size:44
Alignment explanation
Indices: 69990677--69990793 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 44
69990667 TGATGTCACC
* * * *
69990677 GTCCCAGACAGGGTCTTATACGAAATCA-TATAACGA-TGCCAAT
1 GTCCCAGACATGGTCTTACACGAAATCACAAT-ACAATTGCCAAT
* * *
69990720 GTCCCAGAAATGGTCTTACACGTAATCACAATACAATTGTCAAT
1 GTCCCAGACATGGTCTTACACGAAATCACAATACAATTGCCAAT
* *
69990764 GTCCCAGACATGGTCTTACATGTAATCACA
1 GTCCCAGACATGGTCTTACACGAAATCACA
69990794 TCTCAGTAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 27 0.43
44 36 0.57
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (44 bp):
GTCCCAGACATGGTCTTACACGAAATCACAATACAATTGCCAAT
Found at i:69997189 original size:31 final size:29
Alignment explanation
Indices: 69997141--69997207 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
69997131 TTAAATTTTA
*
69997141 TAAATAATTAATATTTATTGCTTAAAAATAT
1 TAAA-AATTAATATTTATTGATT-AAAATAT
* * *
69997172 TTAAAATTTATATTTTATTTATTAAAATAT
1 TAAAAATTAATA-TTTATTGATTAAAATAT
69997202 TAAAAA
1 TAAAAA
69997208 GAAGTAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (29 bp):
TAAAAATTAATATTTATTGATTAAAATAT
Found at i:69997392 original size:13 final size:13
Alignment explanation
Indices: 69997376--69997430 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
69997366 TTTAAACTAA
*
69997376 ATTTTTCAAAAGT
1 ATTTTTCAAAAGC
* *
69997389 ATTTTTCCACAGC
1 ATTTTTCAAAAGC
*
69997402 ACTTTTCAAAAGC
1 ATTTTTCAAAAGC
*
69997415 AGTTTTCAAAAGC
1 ATTTTTCAAAAGC
69997428 ATT
1 ATT
69997431 GCCAAACTAG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (13 bp):
ATTTTTCAAAAGC
Found at i:70008147 original size:21 final size:24
Alignment explanation
Indices: 70008116--70008173 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 24
70008106 CCTAATAATA
*
70008116 ACTCTTCTGAGTTACCTG-ATAAG
1 ACTCTTATGAGTTACCTGAATAAG
* *
70008139 -CTC-TATGAGCTCCCTGAATAAG
1 ACTCTTATGAGTTACCTGAATAAG
70008161 ACTCTTATGAGTT
1 ACTCTTATGAGTT
70008174 TCCTATTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 10 0.36
22 8 0.29
23 3 0.11
24 7 0.25
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (24 bp):
ACTCTTATGAGTTACCTGAATAAG
Found at i:70008529 original size:130 final size:130
Alignment explanation
Indices: 70008293--70008552 Score: 430
Period size: 130 Copynumber: 2.0 Consensus size: 130
70008283 TGTGTTGACG
* * *
70008293 GTTTACAGTTTTATACACCTTGAGTGTACTACCTGAGTATCCATCGATATTTTAATAATTCAACG
1 GTTTACAGTTTTATACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAACG
* *
70008358 GATAAAACTCCTGACATTAGAAATTATGAGATTAAATGAATTATGTCTCAAATGCTTCTAAAAGT
66 GATAAAACTCCTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCAAATGCTTCTAAAAGT
* *
70008423 GTTTACAGTTTTGTACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAATG
1 GTTTACAGTTTTATACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAACG
* * *
70008488 GATAAAACTCTTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCGAATGCTTCTGAAAGT
66 GATAAAACTCCTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCAAATGCTTCTAAAAGT
70008553 TGATAGCATG
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 120 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (130 bp):
GTTTACAGTTTTATACACCTTAAGTGTACTACCTGAGTATCCATCAATATTTCAATAATTCAACG
GATAAAACTCCTGACATGAGAAATTATGAGATTAAAAGAATTATGTCTCAAATGCTTCTAAAAGT
Found at i:70010574 original size:46 final size:46
Alignment explanation
Indices: 70010524--70010696 Score: 133
Period size: 46 Copynumber: 3.7 Consensus size: 46
70010514 TTGAGCATCT
*
70010524 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATGTCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAACA-GTCC
** * *
70010570 GAACTCATTGAGTTGAGTTTGAGTT--C-GA-GAGATGTAACTAGGCATCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-A-G--TCC
* * *
70010617 GAGCTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACACT-C
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACAGTCC
* * * *
70010663 GAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
70010697 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
45 2 0.02
46 53 0.52
47 26 0.26
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGTCC
Found at i:70015497 original size:12 final size:12
Alignment explanation
Indices: 70015480--70015506 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70015470 TTGATTCCAT
70015480 GTCCCAGACATG
1 GTCCCAGACATG
70015492 GTCCCAGACATG
1 GTCCCAGACATG
70015504 GTC
1 GTC
70015507 TTACACTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (12 bp):
GTCCCAGACATG
Found at i:70015600 original size:48 final size:49
Alignment explanation
Indices: 70015492--70015797 Score: 151
Period size: 47 Copynumber: 6.4 Consensus size: 49
70015482 CCCAGACATG
70015492 GTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGATGCCAT
1 GTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGATGCCAT
* * * * *
70015541 GTCCCAAACATGGTCTTACACTGAC-ACCTCTATA-CG-TGCCGATGCTAT
1 GTCCCAGACATGGTCTTACACTGACTA--TCGAAATCGAGGCCGATGCCAT
* ** * *
70015589 GTCCCAGACAT-GTCTTACACT-AGCTCTC-ATCTCAATGCC-AGTGCCAT
1 GTCCCAGACATGGTCTTACACTGA-CTATCGAAATCGAGGCCGA-TGCCAT
* * * * * **
70015636 GTCCCAGAAATGTTCTTACAATGACTCTC-ATAAT-GTGATCGATG-CAT
1 GTCCCAGACATGGTCTTACACTGACTATCGA-AATCGAGGCCGATGCCAT
* ** * * *
70015683 GTCCCAGACAT-GTCTTACACT-AGCTCTC-ATCTCAATGCCAATGCCAT
1 GTCCCAGACATGGTCTTACACTGA-CTATCGAAATCGAGGCCGATGCCAT
* ** * * * * *
70015730 GTCCCAGAAATATTCTTACAATGACTCT-TATAAT-GTGGTCGATG-CAT
1 GTCCCAGACATGGTCTTACACTGACTATCGA-AATCGAGGCCGATGCCAT
70015777 GTCCCAGACAT-GTCTTACACT
1 GTCCCAGACATGGTCTTACACT
70015798 AGCGCACAAA
Statistics
Matches: 195, Mismatches: 44, Indels: 39
0.70 0.16 0.14
Matches are distributed among these distances:
45 4 0.02
46 31 0.16
47 69 0.35
48 56 0.29
49 31 0.16
50 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (49 bp):
GTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGATGCCAT
Found at i:70015638 original size:47 final size:47
Alignment explanation
Indices: 70015587--70015737 Score: 177
Period size: 47 Copynumber: 3.2 Consensus size: 47
70015577 TGCCGATGCT
70015587 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAGTGCC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAGTGCC
* * **
70015634 ATGTCCCAGAAATGTTCTTACAAT-GACTCTCA--T-AATGTGATCGATG-C
1 ATGTCCCAGACATG-TCTTACACTAG-CTCTCATCTCAATGCCA--G-TGCC
*
70015681 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAATGCC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAGTGCC
70015728 ATGTCCCAGA
1 ATGTCCCAGA
70015738 AATATTCTTA
Statistics
Matches: 85, Mismatches: 9, Indels: 20
0.75 0.08 0.18
Matches are distributed among these distances:
45 5 0.06
46 17 0.20
47 41 0.48
48 17 0.20
49 5 0.06
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAGTGCC
Found at i:70015705 original size:94 final size:94
Alignment explanation
Indices: 70015580--70015800 Score: 397
Period size: 94 Copynumber: 2.3 Consensus size: 94
70015570 CTATACGTGC
*
70015580 CGATGCTATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAGTGCCATGTCCCAGAA
1 CGATGC-ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAATGCCATGTCCCAGAA
*
70015645 ATGTTCTTACAATGACTCTCATAATGTGAT
65 ATATTCTTACAATGACTCTCATAATGTGAT
70015675 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAATGCCATGTCCCAGAAA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAATGCCATGTCCCAGAAA
* *
70015740 TATTCTTACAATGACTCTTATAATGTGGT
66 TATTCTTACAATGACTCTCATAATGTGAT
70015769 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
70015801 GCACAAATGA
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
94 116 0.95
95 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCAATGCCATGTCCCAGAAA
TATTCTTACAATGACTCTCATAATGTGAT
Found at i:70016279 original size:19 final size:19
Alignment explanation
Indices: 70016243--70016281 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70016233 GCCATAATTC
70016243 TCATTATTTCACACATTTA
1 TCATTATTTCACACATTTA
*
70016262 TCATGTATTTTACA-ATTTA
1 TCAT-TATTTCACACATTTA
70016281 T
1 T
70016282 GCAAAATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.31, C:0.15, G:0.03, T:0.51
Consensus pattern (19 bp):
TCATTATTTCACACATTTA
Found at i:70020640 original size:13 final size:13
Alignment explanation
Indices: 70020622--70020646 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70020612 TGTGGGTGCA
70020622 CACGGTCGTGTCG
1 CACGGTCGTGTCG
70020635 CACGGTCGTGTC
1 CACGGTCGTGTC
70020647 TTGCTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CACGGTCGTGTCG
Found at i:70023410 original size:38 final size:38
Alignment explanation
Indices: 70023368--70023444 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
70023358 ATCCAAAGCT
70023368 TTGCCCAAATACAGTGTACAAGAAATAACCTAAATCTA
1 TTGCCCAAATACAGTGTACAAGAAATAACCTAAATCTA
*
70023406 TTGCCCAAATACAGTGTACAAGAAATAACTTAAATCTA
1 TTGCCCAAATACAGTGTACAAGAAATAACCTAAATCTA
70023444 T
1 T
70023445 GTATAGATGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.26
Consensus pattern (38 bp):
TTGCCCAAATACAGTGTACAAGAAATAACCTAAATCTA
Found at i:70025883 original size:43 final size:43
Alignment explanation
Indices: 70025822--70025907 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
70025812 ACTCAGTGTG
*
70025822 TAACCCAACAGAATTAGACATGCAAAACATGCAGAAATCTCAT
1 TAACCCAACAGAATTAGACATGCAAAACATACAGAAATCTCAT
* *
70025865 TAACCCTATAGAATTAGACATGCAAAACATACAGAAATCTCAT
1 TAACCCAACAGAATTAGACATGCAAAACATACAGAAATCTCAT
70025908 ATATATATTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.47, C:0.22, G:0.10, T:0.21
Consensus pattern (43 bp):
TAACCCAACAGAATTAGACATGCAAAACATACAGAAATCTCAT
Found at i:70029069 original size:27 final size:26
Alignment explanation
Indices: 70028785--70029061 Score: 200
Period size: 27 Copynumber: 10.3 Consensus size: 26
70028775 AGAATTACTG
* ** *
70028785 AAATACCCTTGGTTTACAAAATTACT
1 AAATACCCTTGATTTGTAAAATTACA
* ** * * *
70028811 AAATACCCTTGGTTTACAAATTTGCC
1 AAATACCCTTGATTTGTAAAATTACA
*
70028837 AAATACCTTTTG-TTTGTAAAATTATCA
1 AAATACC-CTTGATTTGTAAAATTA-CA
* *
70028864 AAATACCCCTGATTTGTGAAATTACCA
1 AAATACCCTTGATTTGTAAAATTA-CA
70028891 AAATACCCTTGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTA-CA
* * * * *
70028918 AAATACCCCTAATTTGGAAAGTTATCG
1 AAATACCCTTGATTTGTAAAATTA-CA
*
70028945 AAATACCCTTAATTTGTAAAATTACAA
1 AAATACCCTTGATTTGTAAAATTAC-A
* **
70028972 AAATACCC-TAATTTACAAAATTACAA
1 AAATACCCTTGATTTGTAAAATTAC-A
**
70028998 AAATACCCTTGACTTTCAAAAATTACA
1 AAATACCCTTGA-TTTGTAAAATTACA
* *
70029025 GAAATACCATTTG-TTTGTAAAATTATCG
1 -AAATACC-CTTGATTTGTAAAATTA-CA
70029053 AAATACCCT
1 AAATACCCT
70029062 AGGTTTGTGG
Statistics
Matches: 207, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
26 66 0.32
27 119 0.57
28 19 0.09
29 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (26 bp):
AAATACCCTTGATTTGTAAAATTACA
Found at i:70029371 original size:41 final size:41
Alignment explanation
Indices: 70029310--70029429 Score: 125
Period size: 41 Copynumber: 2.9 Consensus size: 41
70029300 GGAAGAAATT
* * *
70029310 GAGGATCGCCTGGTTGCTTGACGACCGTGGATCCATCGATG
1 GAGGATCGCATGGTTACTTGACGACCGTGGATCCACCGATG
* * *
70029351 GAGGATTGCATGGTTACTTGACGACTGTGGATCCACCGATT
1 GAGGATCGCATGGTTACTTGACGACCGTGGATCCACCGATG
* * * * *
70029392 AAGAATCAG-ATGGTTGCTTGACAACAGTGGATCCACCG
1 GAGGATC-GCATGGTTACTTGACGACCGTGGATCCACCG
70029430 GTGGCTTTTA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 65 0.98
42 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (41 bp):
GAGGATCGCATGGTTACTTGACGACCGTGGATCCACCGATG
Found at i:70029623 original size:22 final size:22
Alignment explanation
Indices: 70029571--70029635 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
70029561 GCCAATTATT
*
70029571 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
70029593 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
70029615 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
70029636 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:70029846 original size:25 final size:25
Alignment explanation
Indices: 70029779--70029861 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
70029769 TTGCTAGTAA
* * *
70029779 GTTATTGATGGCTTTATGCCGATAT
1 GTTATCGATGGCTTTGTGCCGATCT
* * *
70029804 GATATTGATGGCTATGTGCCGATCT
1 GTTATCGATGGCTTTGTGCCGATCT
*
70029829 GTTATCGATGGCTTTGTGCTGATCGT
1 GTTATCGATGGCTTTGTGCCGATC-T
*
70029855 ATTATCG
1 GTTATCG
70029862 TAATAATGGC
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
25 41 0.85
26 7 0.15
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.41
Consensus pattern (25 bp):
GTTATCGATGGCTTTGTGCCGATCT
Found at i:70032713 original size:27 final size:27
Alignment explanation
Indices: 70032681--70032768 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
70032671 AGAATTACTG
**
70032681 AATACCCTTGGTTTAAAAAATTACCAA
1 AATACCCTTGGTTTGTAAAATTACCAA
* *
70032708 AATACCCCTAGTTTGTAAAATTACCAA
1 AATACCCTTGGTTTGTAAAATTACCAA
70032735 AATACCCTTGGTTTGTAAAATTACCAA
1 AATACCCTTGGTTTGTAAAATTACCAA
70032762 AATACCC
1 AATACCC
70032769 CTAATTTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATACCCTTGGTTTGTAAAATTACCAA
Found at i:70032716 original size:53 final size:54
Alignment explanation
Indices: 70032647--70032771 Score: 146
Period size: 54 Copynumber: 2.3 Consensus size: 54
70032637 GTAGGCTAGT
* * * **
70032647 ATTACCGAAATGCCCCT-GTAGGGTAGAATTA-CTGAATACCCTTGGTTTAAAAA
1 ATTACCAAAATACCCCTAGT-GGGTAAAATTACCAAAATACCCTTGGTTTAAAAA
** **
70032700 ATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAA
1 ATTACCAAAATACCCCTAGTGGGTAAAATTACCAAAATACCCTTGGTTTAAAAA
70032754 ATTACCAAAATACCCCTA
1 ATTACCAAAATACCCCTA
70032772 ATTTTTGAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 23 0.38
54 38 0.62
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.29
Consensus pattern (54 bp):
ATTACCAAAATACCCCTAGTGGGTAAAATTACCAAAATACCCTTGGTTTAAAAA
Found at i:70032755 original size:54 final size:54
Alignment explanation
Indices: 70032681--70032873 Score: 201
Period size: 54 Copynumber: 3.6 Consensus size: 54
70032671 AGAATTACTG
* ** *
70032681 AATACCCTTGGTTTAAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAA
* * * *
70032735 AATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAATTTTTGAAATTACGAA
1 AATACCCTTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAA
*** * * * **
70032789 AATA-CCAAAATTTTTGAAATTACCAAAATACCCCTAATTTGGAAAATTACTGA
1 AATACCCTTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAA
* *
70032842 AATACCCCTGATTTGGAAAATTA-CATAAATAC
1 AATACCCTTGATTTGTAAAATTACCA-AAATAC
70032874 TCCCGATTTA
Statistics
Matches: 114, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 44 0.39
54 70 0.61
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AATACCCTTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAA
Found at i:70032836 original size:53 final size:53
Alignment explanation
Indices: 70032697--70032847 Score: 171
Period size: 53 Copynumber: 2.8 Consensus size: 53
70032687 CTTGGTTTAA
* * * ****
70032697 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGGAAAATTACGAAAATA-CCAAAATTTGT
* *
70032751 AAAATTACCAAAATACCCCTAATTTTTG-AAATTACGAAAATACCAAAATTTTT
1 AAAATTACCAAAATACCCCTAA-TTTGGAAAATTACGAAAATACCAAAATTTGT
*
70032804 GAAATTACCAAAATACCCCTAATTTGGAAAATTACTG-AAATACC
1 AAAATTACCAAAATACCCCTAATTTGGAAAATTAC-GAAAATACC
70032848 CCTGATTTGG
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.05
53 41 0.49
54 35 0.42
55 3 0.04
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTAATTTGGAAAATTACGAAAATACCAAAATTTGT
Found at i:70032856 original size:27 final size:27
Alignment explanation
Indices: 70032697--70032891 Score: 159
Period size: 27 Copynumber: 7.3 Consensus size: 27
70032687 CTTGGTTTAA
*
70032697 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGG
* * *
70032724 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGG
* *
70032751 AAAATTACCAAAATACCCCTAATTTTTG
1 AAAATTACCAAAATACCCCTGA-TTTGG
* *** *
70032779 -AAATTACGAAAATA-CCAAAATTTTTG
1 AAAATTACCAAAATACCCCTGA-TTTGG
*
70032805 -AAATTACCAAAATACCCCTAATTTGG
1 AAAATTACCAAAATACCCCTGATTTGG
**
70032831 AAAATTACTGAAATACCCCTGATTTGG
1 AAAATTACCAAAATACCCCTGATTTGG
**
70032858 AAAATTA-CATAAATACTCCC-GATTTAC
1 AAAATTACCA-AAATAC-CCCTGATTTGG
70032885 AAAATTA
1 AAAATTA
70032892 TAGAAATACC
Statistics
Matches: 141, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
26 27 0.19
27 108 0.77
28 6 0.04
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGG
Found at i:70032863 original size:80 final size:80
Alignment explanation
Indices: 70032725--70032873 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
70032715 CTAGTTTGTA
* ** * *
70032725 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAATTTTTGAAATTACGA-A
1 AAATTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCCTAATTTTGGAAATTAC-ATA
70032789 AATACCAAAATTTTTG
65 AATACCAAAATTTTTG
** *
70032805 AAATTACCAAAATACCCCTAATTTGGAAAATTACTGAAATACCCCTGA-TTTGGAAAATTACATA
1 AAATTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCCTAATTTTGG-AAATTACATA
70032869 AATAC
65 AATAC
70032874 TCCCGATTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 5 0.08
80 54 0.92
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCCTAATTTTGGAAATTACATAA
ATACCAAAATTTTTG
Found at i:70032890 original size:107 final size:107
Alignment explanation
Indices: 70032698--70032891 Score: 257
Period size: 107 Copynumber: 1.8 Consensus size: 107
70032688 TTGGTTTAAA
* * * * *
70032698 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCCTGATTTGGAAAATTACCAAA
***
70032763 ATACCCCTAATTTTTGAAATTACGAAAATACCAAAATTTTTG
66 ATACCCCTAATTTACAAAATTACGAAAATACCAAAATTTTTG
**
70032805 AAATTACCAAAATACCCCTAATTTGGAAAATTACTGAAATACCCCTGATTTGGAAAATTA-CATA
1 AAATTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCCTGATTTGGAAAATTACCA-A
*
70032869 AATACTCCC-GATTTACAAAATTA
65 AATAC-CCCTAATTTACAAAATTA
70032892 TAGAAATACC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
106 2 0.03
107 69 0.93
108 3 0.04
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (107 bp):
AAATTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCCTGATTTGGAAAATTACCAAA
ATACCCCTAATTTACAAAATTACGAAAATACCAAAATTTTTG
Found at i:70032898 original size:27 final size:27
Alignment explanation
Indices: 70032814--70032901 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
70032804 GAAATTACCA
* **
70032814 AAATACCCCTAATTTGGAAAATTACT-G
1 AAATACCCCTGATTTACAAAATTA-TAG
** * *
70032841 AAATACCCCTGATTTGGAAAATTACAT
1 AAATACCCCTGATTTACAAAATTATAG
70032868 AAATACTCCC-GATTTACAAAATTATAG
1 AAATAC-CCCTGATTTACAAAATTATAG
70032895 AAATACC
1 AAATACC
70032902 ATTACTTTGC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.02
27 48 0.92
28 3 0.06
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATACCCCTGATTTACAAAATTATAG
Done.