Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 211 of 332
Found at i:70033261 original size:41 final size:41
Alignment explanation
Indices: 70033201--70033280 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
70033191 CAAGAAATTG
70033201 AGGATCGCATAGTTGCTTGACGAAT-GTGGATCCACCGATTA
1 AGGATCGCATAGTTGCTTGACG-ATCGTGGATCCACCGATTA
* *
70033242 AGGATCGCATGGTTTCTTGACGATCGTGGATCCACCGAT
1 AGGATCGCATAGTTGCTTGACGATCGTGGATCCACCGAT
70033281 GGCTTTTAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 2 0.06
41 34 0.94
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
AGGATCGCATAGTTGCTTGACGATCGTGGATCCACCGATTA
Found at i:70033480 original size:22 final size:22
Alignment explanation
Indices: 70033420--70033481 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
70033410 GCCAATTATT
* *
70033420 CTAATTATGGCTTTGCGCCAAC
1 CTAATTATGGCTCTGTGCCAAC
70033442 CTACA-TATGGCTCTGTGCCAAC
1 CTA-ATTATGGCTCTGTGCCAAC
*
70033464 CTAATTATGGCTGTGTGC
1 CTAATTATGGCTCTGTGC
70033482 TAAACGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (22 bp):
CTAATTATGGCTCTGTGCCAAC
Found at i:70033651 original size:50 final size:50
Alignment explanation
Indices: 70033581--70033693 Score: 127
Period size: 50 Copynumber: 2.3 Consensus size: 50
70033571 GTTACTCTAG
* * * * * **
70033581 TTGAAGGCTTTGTGCTGATATGCTATTGAAGGCTTCATGTTGATATGTTA
1 TTGATGGCTTTGTACCGATATGATATTGAAGGCTACATGCCGATATGTTA
* * *
70033631 TTGATGGCTTTGTACCGATATGATATTGATGGCTACGTGCCGATCTGTTA
1 TTGATGGCTTTGTACCGATATGATATTGAAGGCTACATGCCGATATGTTA
*
70033681 TCGATGGCTTTGT
1 TTGATGGCTTTGT
70033694 GTCGATTGTA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.19, C:0.13, G:0.27, T:0.41
Consensus pattern (50 bp):
TTGATGGCTTTGTACCGATATGATATTGAAGGCTACATGCCGATATGTTA
Found at i:70033699 original size:25 final size:25
Alignment explanation
Indices: 70033581--70033699 Score: 103
Period size: 25 Copynumber: 4.8 Consensus size: 25
70033571 GTTACTCTAG
* * *
70033581 TTGAAGGCTTTGTGCTGATATGCTA
1 TTGATGGCTTTGTGCCGATATGTTA
* ** **
70033606 TTGAAGGCTTCATGTTGATATGTTA
1 TTGATGGCTTTGTGCCGATATGTTA
* *
70033631 TTGATGGCTTTGTACCGATATGATA
1 TTGATGGCTTTGTGCCGATATGTTA
** *
70033656 TTGATGGCTACGTGCCGATCTGTTA
1 TTGATGGCTTTGTGCCGATATGTTA
* *
70033681 TCGATGGCTTTGTGTCGAT
1 TTGATGGCTTTGTGCCGAT
70033700 TGTATTATCA
Statistics
Matches: 74, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 74 1.00
ACGTcount: A:0.19, C:0.13, G:0.27, T:0.40
Consensus pattern (25 bp):
TTGATGGCTTTGTGCCGATATGTTA
Found at i:70033878 original size:22 final size:22
Alignment explanation
Indices: 70033831--70033878 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
70033821 CCACAGGTAG
* *
70033831 TGCAGGGTTGGACGGAGGTAAG
1 TGCAGGGTTGGACGGAGATAAA
*
70033853 TGCAGGGTTGGATGG-GATAACA
1 TGCAGGGTTGGACGGAGATAA-A
70033875 TGCA
1 TGCA
70033879 TCCATACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.25, C:0.10, G:0.44, T:0.21
Consensus pattern (22 bp):
TGCAGGGTTGGACGGAGATAAA
Found at i:70042511 original size:27 final size:27
Alignment explanation
Indices: 70042395--70042582 Score: 188
Period size: 27 Copynumber: 7.1 Consensus size: 27
70042385 AACATTGATC
* *
70042395 TTACTACATAAGGGAAAAATAATCATT
1 TTACTACATAAGGGCAAAATAGTCATT
* ** *
70042422 TTTCTTTATAA-GGAAAAATAGTCATT
1 TTACTACATAAGGGCAAAATAGTCATT
* *
70042448 TTACCACATAAGGGC-AAA-AGTCAAT
1 TTACTACATAAGGGCAAAATAGTCATT
*
70042473 TTATCT-CGTAAGGGCAAAATAGTCATT
1 TTA-CTACATAAGGGCAAAATAGTCATT
* * *
70042500 TTACTATATAAGGGCAAAAGAATCATT
1 TTACTACATAAGGGCAAAATAGTCATT
* * *
70042527 TTACCATATAAGGGCAAAACAGTCATT
1 TTACTACATAAGGGCAAAATAGTCATT
*
70042554 TTACCACATAAGGG-AAAATAGTCATT
1 TTACTACATAAGGGCAAAATAGTCATT
70042580 TTA
1 TTA
70042583 TCAATTAGGG
Statistics
Matches: 134, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
25 17 0.13
26 44 0.33
27 73 0.54
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (27 bp):
TTACTACATAAGGGCAAAATAGTCATT
Found at i:70042725 original size:18 final size:17
Alignment explanation
Indices: 70042699--70042732 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70042689 CATTATGTGG
70042699 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
70042717 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
70042733 AATCCCAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:70042832 original size:27 final size:27
Alignment explanation
Indices: 70042789--70042849 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
70042779 ATATGCTCTA
* *
70042789 CATTTTACCGCATAAGGGCAAAACAGT
1 CATTTTACCACAAAAGGGCAAAACAGT
*
70042816 CATTTTACCACAAAAGGGCAAAATAGT
1 CATTTTACCACAAAAGGGCAAAACAGT
70042843 CATTTTA
1 CATTTTA
70042850 TAAATCAGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (27 bp):
CATTTTACCACAAAAGGGCAAAACAGT
Found at i:70042997 original size:267 final size:266
Alignment explanation
Indices: 70042523--70043058 Score: 883
Period size: 267 Copynumber: 2.0 Consensus size: 266
70042513 GCAAAAGAAT
* * *
70042523 CATTTTACCATATAAGGGCAAAACAGTCATTTTACCACATAAGGGAAAATAGTCATTTTATCAAT
1 CATTTTACCACATAAGGGCAAAACAGTCATTTTACCACAAAAGGGAAAATAGTCATTTTATAAAT
* * * *
70042588 TAGGGGTCCAAACACACTTACCGACCCAACAGTAGGTCCACAGTCGTCTCGGGCGACCCGTGCAA
66 CAGGGCTCCAAACACACTTACCGACCCAACAGTAGGTCCACAGTCATCTCAGGCGACCCGTGCAA
** *
70042653 CCTAAACAGTCAAACAGAAAAAATGGGCCAAAGGCCCATTATGTGGGCCCATGTGGGCCCACACG
131 CCTAAACAGTCAAACAGAAAAAATGAACCAAAGGCCCATTATGCGGGCCCATGTGGGCCCACACG
* *
70042718 CCCGTGTGGCCCACAAATCCCAGATATGGCCTTGGCTATGTGGATTACACAGCCTGGCCCAATAT
196 CCCGTGTGGCCCACAAAGCCCAGATATGGCCTTGGCCATGTGGATTACACAGCCTGGCCCAATAT
70042783 GCTCTA
261 GCTCTA
*
70042789 CATTTTACCGCATAAGGGCAAAACAGTCATTTTACCACAAAAGGGCAAAATAGTCATTTTATAAA
1 CATTTTACCACATAAGGGCAAAACAGTCATTTTACCACAAAAGGG-AAAATAGTCATTTTATAAA
* *
70042854 TCAGGGCTCCAGACACACTTACCGACCCAACAGTAGGTCCACATTCATCTCAGGCGACCCGTGCA
65 TCAGGGCTCCAAACACACTTACCGACCCAACAGTAGGTCCACAGTCATCTCAGGCGACCCGTGCA
* * * *
70042919 ACCTAAACAGTCAAACAGATAAAATGAACCCAAGGCCCATTATGCGGGCCCATTTTGGCCCACAC
130 ACCTAAACAGTCAAACAGAAAAAATGAACCAAAGGCCCATTATGCGGGCCCATGTGGGCCCACAC
70042984 GCCCGTGTGGCCCACAAAGCCCAGATATGGCCTTGGCCATGTGGATTACACAGCCTGGCCCAATA
195 GCCCGTGTGGCCCACAAAGCCCAGATATGGCCTTGGCCATGTGGATTACACAGCCTGGCCCAATA
*
70043049 TTCTCTA
260 TGCTCTA
70043056 CAT
1 CAT
70043059 GTTCGCGTGG
Statistics
Matches: 249, Mismatches: 20, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
266 42 0.17
267 207 0.83
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (266 bp):
CATTTTACCACATAAGGGCAAAACAGTCATTTTACCACAAAAGGGAAAATAGTCATTTTATAAAT
CAGGGCTCCAAACACACTTACCGACCCAACAGTAGGTCCACAGTCATCTCAGGCGACCCGTGCAA
CCTAAACAGTCAAACAGAAAAAATGAACCAAAGGCCCATTATGCGGGCCCATGTGGGCCCACACG
CCCGTGTGGCCCACAAAGCCCAGATATGGCCTTGGCCATGTGGATTACACAGCCTGGCCCAATAT
GCTCTA
Found at i:70052922 original size:39 final size:39
Alignment explanation
Indices: 70052866--70053024 Score: 237
Period size: 39 Copynumber: 4.1 Consensus size: 39
70052856 AATTTTATTA
* *
70052866 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCAGATACATTT
* *
70052905 CCAGCACAAAGCTTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCAGATACATTT
* * *
70052944 CCAGCACGAAGCCTGCAGGTCTTTAGCCCAGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCAGATACATTT
* *
70052983 CCAGCACGAAGCCTGCGGGTCTTTAGCCCAGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCAGATACATTT
70053022 CCA
1 CCA
70053025 TACACATTTC
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCAGATACATTT
Found at i:70054995 original size:27 final size:28
Alignment explanation
Indices: 70054911--70055008 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
70054901 TATGAGATTG
* * * *
70054911 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
70054940 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70054968 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70054995 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
70055009 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70055019 original size:27 final size:27
Alignment explanation
Indices: 70054939--70055021 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
70054929 TAAATTGTAC
* *
70054939 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
70054967 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
70054994 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
70055021 A
1 A
70055022 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:70055022 original size:29 final size:27
Alignment explanation
Indices: 70054911--70055022 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
70054901 TATGAGATTG
** * *
70054911 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
70054940 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
70054968 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
70054995 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
70055023 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:70058423 original size:93 final size:93
Alignment explanation
Indices: 70058295--70058465 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70058285 GCCCATAAGT
* * *
70058295 GAACTCGGACTCAACTCAATGAGCTCGGCCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
70058360 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
70058388 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
70058453 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70058466 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70058462 original size:46 final size:46
Alignment explanation
Indices: 70058287--70058462 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
70058277 TGGAACCCGC
* * * *
70058287 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70058333 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
70058383 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
70058426 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70058463 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70064197 original size:27 final size:27
Alignment explanation
Indices: 70064138--70064406 Score: 340
Period size: 27 Copynumber: 10.0 Consensus size: 27
70064128 ATATATACAA
* * ** *
70064138 CACATAGGGGCAATATAGTCAGCTTAA
1 CACATAAGGGCAAAATAGTCATTTTAC
70064165 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * *
70064192 CTCATAAAGGCAAAACAGTTATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
70064219 CACATCAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
70064246 CTCATAAGGGCAAAATAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
70064273 CATATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
70064300 CACATAAGGGTAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
70064327 CTCATAGGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
70064354 CACATAATGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
70064381 CACATAAGCGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
70064407 TCAATTAGGG
Statistics
Matches: 208, Mismatches: 34, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 208 1.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:70067797 original size:93 final size:93
Alignment explanation
Indices: 70067669--70067840 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
70067659 GCCCATAAGT
* *
70067669 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
70067734 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * **
70067762 GAACTCGGACTCAACTCAATGAGTTC-GGACATTCGCATCCATAAATGAACTCGGACTCTTCTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
70067826 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
70067841 CAAACATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:70067836 original size:46 final size:45
Alignment explanation
Indices: 70067661--70067835 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
70067651 TGTAACCCGC
*
70067661 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
70067707 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
70067753 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
* ** *
70067800 CCATAAATGAACTCGGACTCTTCTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
70067836 ATGCCCAAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 64 0.60
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:70073145 original size:40 final size:40
Alignment explanation
Indices: 70073114--70073246 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
70073104 GGACTAAGAT
* * * *
70073114 CCGAAGGCCTTTGTGCAAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
70073154 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
70073194 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
70073234 CCGAAGGCATTTG
1 CCGAAGGCATTTG
70073247 AACGAGGAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
40 84 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:70073198 original size:80 final size:81
Alignment explanation
Indices: 70073061--70073246 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 81
70073051 TTGAATGCTG
* *
70073061 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70073125 TGTGCAAGATACTA-A
66 TGTGCAAGATACTATA
* * * * **
70073140 TTCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
70073203 TTTGTGCGAGTTACTATA
64 TTTGTGCAAGATACTATA
* *
70073221 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70073247 AACGAGGAGC
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 81 0.90
81 8 0.09
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCAAGATACTATA
Found at i:70073260 original size:40 final size:40
Alignment explanation
Indices: 70073062--70073246 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
70073052 TGAATGCTGT
* * * * *
70073062 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
** * * * *
70073102 CCGGACTAAGAT-CCGAAGGCCTTTGTGCAAGATACTA-ATT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
70073142 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
70073181 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
70073222 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTG
70073247 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 2 0.02
40 115 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70073264 original size:80 final size:79
Alignment explanation
Indices: 70073062--70073279 Score: 192
Period size: 80 Copynumber: 2.7 Consensus size: 79
70073052 TGAATGCTGT
** * * * * *
70073062 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCCTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCATT
*
70073125 TGTGCAAGATACTAATT
63 TGTGCAAGATACTAATA
* ** * *
70073142 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTG
* *
70073207 TGCGAGTTACT-ATAA
65 TGCAAGATACTAAT-A
* * *
70073222 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
70073280 TACGTGATTT
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
79 18 0.16
80 87 0.76
81 9 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGT
GCAAGATACTAATA
Found at i:70081502 original size:40 final size:40
Alignment explanation
Indices: 70081419--70081604 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
70081409 TTGAATGCTG
* * * * *
70081419 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
70081459 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70081499 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70081539 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
70081580 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
70081605 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70081622 original size:80 final size:79
Alignment explanation
Indices: 70081419--70081637 Score: 212
Period size: 80 Copynumber: 2.7 Consensus size: 79
70081409 TTGAATGCTG
** * * * * *
70081419 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
70081482 TTGTGCGAGATACTAAA
63 TTGTGCGAGATACTAAA
* ** * *
70081499 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
*
70081564 GTGCGAGTTACTATAA
65 GTGCGAGATACTA-AA
* * *
70081580 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
70081638 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
79 16 0.14
80 90 0.78
81 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:70112059 original size:40 final size:40
Alignment explanation
Indices: 70112015--70112090 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
70112005 TAGTGCCTCA
* *
70112015 TATAGCCGAAGCTA-TTTCAATTCGCACACTTAGTGCTATT
1 TATAGCCGAAACTATTTTCAA-ACGCACACTTAGTGCTATT
* *
70112055 TATAGCTGAAACTATTTTCAAACGTACACTTAGTGC
1 TATAGCCGAAACTATTTTCAAACGCACACTTAGTGC
70112091 CAAACATAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 25 0.81
41 6 0.19
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (40 bp):
TATAGCCGAAACTATTTTCAAACGCACACTTAGTGCTATT
Found at i:70127633 original size:34 final size:34
Alignment explanation
Indices: 70127567--70127633 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
70127557 ATATCGATCT
*
70127567 CAATATCAGTGTACGCCTTAGCTCAATGCAGTAA
1 CAATATCAGTGTACGCCTTAGCCCAATGCAGTAA
**
70127601 CAATATCAGTGTGGGCCTTAGCCCACAT-CAGTA
1 CAATATCAGTGTACGCCTTAGCCCA-ATGCAGTA
70127634 TAGTATCCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (34 bp):
CAATATCAGTGTACGCCTTAGCCCAATGCAGTAA
Found at i:70130538 original size:50 final size:51
Alignment explanation
Indices: 70130470--70130598 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
70130460 GACCATGGCA
* *
70130470 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAAGACCAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAAGACAAATG
* *
70130521 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAAGACAAATG
* * *
70130571 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
70130599 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 46 0.66
51 24 0.34
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAAGACAAATG
Found at i:70130612 original size:31 final size:31
Alignment explanation
Indices: 70130574--70130722 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
70130564 ACAAATGACA
*
70130574 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70130605 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
70130636 AGTGAAAAGTGGTAGCTCCTGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
70130667 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70130698 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
70130723 AAGTGACAAG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:70136808 original size:40 final size:40
Alignment explanation
Indices: 70136740--70136911 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
70136730 ACCCAAGCAT
* *
70136740 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCATAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
70136779 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
70136819 CTTCAGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
70136859 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
70136899 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
70136912 TTCGGTTATC
Statistics
Matches: 111, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 95 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:70136886 original size:80 final size:79
Alignment explanation
Indices: 70136740--70136911 Score: 242
Period size: 80 Copynumber: 2.2 Consensus size: 79
70136730 ACCCAAGCAT
* * * *
70136740 CTTCGGGAT-TTAGCCGGATATAACAACTCGCATAAATGCCTTCGGGTCTTAGCCTGGATATAGC
1 CTTC-GGATCTTAGCCGGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
70136804 AACTCGCACAAATGC
65 AACTCGCACAAATGC
70136819 CTTCAGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
1 CTTC-GGATCTTAG-CCGGATATAA-CAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
*
70136882 GCAACTCGCACGAATGC
63 GCAACTCGCACAAATGC
70136899 CTTCGGATCTTAG
1 CTTCGGATCTTAG
70136912 TTCGGTTATC
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 12 0.14
80 69 0.83
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:70145003 original size:40 final size:40
Alignment explanation
Indices: 70144936--70145112 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
70144926 ACCCAAGCAT
* *
70144936 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCATAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
70144975 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * * *
70145015 CTTCAGGTCTTAGCCCGAATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * * *
70145055 CTTCGGGACATAGCCCGGATATAGAAACTCACACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
70145095 CTTCAGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
70145113 TTATCATCCG
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 97 0.87
41 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:70149259 original size:24 final size:24
Alignment explanation
Indices: 70149232--70149281 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
70149222 TAGTTATATT
70149232 ACGTGATATATGATTAAGTGACTA
1 ACGTGATATATGATTAAGTGACTA
70149256 ACGTGATATATGATTAAGTGACTA
1 ACGTGATATATGATTAAGTGACTA
70149280 AC
1 AC
70149282 TCATCGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (24 bp):
ACGTGATATATGATTAAGTGACTA
Found at i:70156651 original size:24 final size:24
Alignment explanation
Indices: 70156624--70156673 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
70156614 TAGTTATATT
70156624 ACGTGATATATGATTAAGTGACTA
1 ACGTGATATATGATTAAGTGACTA
70156648 ACGTGATATATGATTAAGTGACTA
1 ACGTGATATATGATTAAGTGACTA
70156672 AC
1 AC
70156674 TCATCGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (24 bp):
ACGTGATATATGATTAAGTGACTA
Found at i:70161183 original size:27 final size:26
Alignment explanation
Indices: 70161129--70161296 Score: 90
Period size: 27 Copynumber: 6.3 Consensus size: 26
70161119 TTAGTTTACC
* * *
70161129 AAATTACTGAAATACCCCC-AGTTGTA
1 AAATTAC-CAAATACCCCCGATTTATA
*
70161155 AAACTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCCCGATTTATA
* * *
70161182 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTA-CCAAATACCCCCGATTTATA
* **
70161209 AAATTACCAAAATA-ACCTTAGTTTGA-A
1 AAATTACC-AAATACCCCCGA-TTT-ATA
* * * *
70161236 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTAC-CAAATACCCCCGATTTATA
* * *
70161263 AAATTATCAAAGTACCCCTGATTTACA
1 AAATTACCAAA-TACCCCCGATTTATA
70161290 AAATTAC
1 AAATTAC
70161297 TATTTTACCC
Statistics
Matches: 104, Mismatches: 28, Indels: 19
0.69 0.19 0.13
Matches are distributed among these distances:
25 3 0.03
26 20 0.19
27 74 0.71
28 7 0.07
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACCAAATACCCCCGATTTATA
Found at i:70161297 original size:54 final size:54
Alignment explanation
Indices: 70161123--70161298 Score: 178
Period size: 54 Copynumber: 3.3 Consensus size: 54
70161113 AATACTTTAG
* * * * * *
70161123 TTTACCAAATTACTGAAATACCC-CCAGTTGTAAAACTACCAAAGTACCCCCGA
1 TTTACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
* ** * * * * *
70161176 TTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCAAAATA-ACCTTA
1 TTTACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
*
70161229 GTTTGA-AAAATTACTAAAATACCCTCGACTTGTAAAATTATCAAAGTACCCCTGA
1 -TTT-ACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
70161284 TTTACAAAATTACTA
1 TTTACAAAATTACTA
70161299 TTTTACCCTC
Statistics
Matches: 98, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
53 22 0.22
54 71 0.72
55 5 0.05
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
TTTACAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGA
Found at i:70161305 original size:27 final size:27
Alignment explanation
Indices: 70161278--70161495 Score: 294
Period size: 27 Copynumber: 8.1 Consensus size: 27
70161268 ATCAAAGTAC
*
70161278 CCCT-GATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* *
70161304 CCCTCAATTTACAAAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* *
70161331 CCCTCGATTGACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
*
70161358 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
*
70161385 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
*
70161412 CCCTCGATTGACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * **
70161439 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * *
70161466 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
70161493 CCC
1 CCC
70161496 CTAGGGTGTT
Statistics
Matches: 175, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
26 4 0.02
27 171 0.98
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTATTTTA
Found at i:70161776 original size:27 final size:26
Alignment explanation
Indices: 70161732--70161783 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70161722 CTCGCTGCAA
*
70161732 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
70161759 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
70161784 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70161860 original size:27 final size:26
Alignment explanation
Indices: 70161820--70161879 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
70161810 CGCCACATAT
* *
70161820 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
70161846 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
70161873 ATATCTG
1 ATATCTG
70161880 GAAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:70162037 original size:6 final size:6
Alignment explanation
Indices: 70162021--70162128 Score: 71
Period size: 6 Copynumber: 17.7 Consensus size: 6
70162011 TTCAGTTACT
* * * *
70162021 TGATAC TGATTC TGATTC TAATTC TG-TCACC TGATTC TAATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC
* * *
70162070 TGATTC TGATTC TG-TCACC TAATTC TGATTC TGATTC TCAATT- TGATTC
1 TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC T-GATTC TGATTC
70162119 T-AGTTC TGAT
1 TGA-TTC TGAT
70162129 AATGTTTCTT
Statistics
Matches: 79, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
5 6 0.08
6 62 0.78
7 9 0.11
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (6 bp):
TGATTC
Found at i:70162067 original size:37 final size:37
Alignment explanation
Indices: 70162026--70162107 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
70162016 TTACTTGATA
*
70162026 CTGATTCTGATTCTAATTCTGTCACCTGATTCTAATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATTCTAATT
* *
70162063 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTAATTCTGTCACCTAATTCTAATT
70162100 CTGATTCT
1 CTGATTCT
70162108 CAATTTGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTGTCACCTAATTCTAATT
Found at i:70162117 original size:37 final size:37
Alignment explanation
Indices: 70162026--70162119 Score: 127
Period size: 37 Copynumber: 2.5 Consensus size: 37
70162016 TTACTTGATA
* * *
70162026 CTGATTCTGATTCTAATTCTGTCACCTGATTCTAATT
1 CTGATTCTAATTCTGATTCTGTCACCTAATTCTAATT
* *
70162063 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTAATTCTGATTCTGTCACCTAATTCTAATT
70162100 CTGATTCTCAATT-TGATTCT
1 CTGATTCT-AATTCTGATTCT
70162120 AGTTCTGATA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 49 0.94
38 3 0.06
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (37 bp):
CTGATTCTAATTCTGATTCTGTCACCTAATTCTAATT
Found at i:70162909 original size:56 final size:56
Alignment explanation
Indices: 70162823--70162988 Score: 219
Period size: 56 Copynumber: 3.0 Consensus size: 56
70162813 CCATGGCATT
*
70162823 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTCC
*
70162879 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTCC
* * * ** * *
70162935 -ATTATATGTGTGAGAATAAGACC-CTGTCTAGGACAGTGGCATCGATATGTGATT
1 GA-TATATGTGTGCGAGTAAGACCAC-GTTTAATACATTGGCATCAATATGTGATT
70162989 ACATGTAAGA
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
55 2 0.02
56 98 0.98
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCAATATGTGATTCC
Found at i:70165253 original size:129 final size:129
Alignment explanation
Indices: 70165023--70165284 Score: 479
Period size: 129 Copynumber: 2.0 Consensus size: 129
70165013 AACCCCATTC
*
70165023 CGACAACGAACACAGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAGCTCCAACTAATAAGC
1 CGACAACGAACACAGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAACTCCAACTAATAAGC
*
70165088 AACCCACCCCACACACTTCAGAATTTGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
66 AACCCACCCCACACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
* *
70165152 CGACAATGAACACGGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAACTCCAACTAATAAGC
1 CGACAACGAACACAGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAACTCCAACTAATAAGC
*
70165217 AACCCACCCCGCACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
66 AACCCACCCCACACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
70165281 CGAC
1 CGAC
70165285 CAAATCTAAG
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 128 1.00
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.19
Consensus pattern (129 bp):
CGACAACGAACACAGGTTAGGGGTGTTACACAGTCCAACTCTGGAGGCAACTCCAACTAATAAGC
AACCCACCCCACACACTTCAGAATTCGATACGGTCCAATGAACCTAGGGCTCAACTTGCCCTTA
Found at i:70165880 original size:106 final size:106
Alignment explanation
Indices: 70165695--70165911 Score: 389
Period size: 106 Copynumber: 2.0 Consensus size: 106
70165685 AGGATGGAAC
70165695 GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
1 GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
* *
70165760 GCGAGGATCTCTATCAGAAATTATCGAAACAGGTACCCCAT
66 GCAAGGACCTCTATCAGAAATTATCGAAACAGGTACCCCAT
* *
70165801 GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAGAAGTGAGAAGTGAA
1 GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
*
70165866 GCAAGGACCTCTATCAGAAATTATTGAAACAGGTACCCCAT
66 GCAAGGACCTCTATCAGAAATTATCGAAACAGGTACCCCAT
70165907 GCAGT
1 GCAGT
70165912 CTTACAATAT
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (106 bp):
GCAGTACTGAAGTCCAATCTCAAACCCAAAGCCTCATGCAGTTTCTTCCAAAACTGAGAAGTGAA
GCAAGGACCTCTATCAGAAATTATCGAAACAGGTACCCCAT
Found at i:70171381 original size:272 final size:272
Alignment explanation
Indices: 70170895--70171392 Score: 836
Period size: 272 Copynumber: 1.8 Consensus size: 272
70170885 GGCTTATTCG
*
70170895 ATCATGAGAAGAACCACATAACAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGCT
1 ATCATGAGAAGAACCACATAAAAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGCT
* * *** *
70170960 GGAATCCTCATAATTGAAAAAATATTTTTCTCAACTCTGTTTCTTTTCACAATTGTGATTTCTAT
66 GGAATCCTCATAATCGAAAAAATATTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAAT
70171025 TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAACG
131 TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAACG
70171090 TTTTTCTTGGGCACGACTACGCCCAAGATTTAAGGACACAACAAGATGTTTTTCTTGTGAAATAT
196 TTTTTCTTGGGCACGACTACGCCCAAGATTTAAGGACACAACAAGATGTTTTTCTTGTGAAATAT
70171155 AGAAGAAGTGGT
261 AGAAGAAGTGGT
* ** *
70171167 ATCATGAGAAGAACCACCTAAAAGTCTATGATTGAACCAAGAGAGGACCGACATAACTGAAGGTT
1 ATCATGAGAAGAACCACATAAAAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGCT
* *
70171232 GGAATCCTCCA-AATCGAAAAACTCTTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAA
66 GGAATCCT-CATAATCGAAAAAATATTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAA
* * *
70171296 TTTATTTAATCTCAACTTGTCCATATTCTTAATTCTATATTTTTATTTATTTTTCCAGGTCTGAC
130 TTTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAAC
70171361 GTTTTTCTTGGGCACGACTACGCCCAAGATTT
195 GTTTTTCTTGGGCACGACTACGCCCAAGATTT
70171393 TGAGGAATAA
Statistics
Matches: 209, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
272 207 0.99
273 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (272 bp):
ATCATGAGAAGAACCACATAAAAGTCTATGATTGAACCAAGAGAGGACCGACATAACCAAAGGCT
GGAATCCTCATAATCGAAAAAATATTTTTCTCAACTCTGTTTCTTTTCAAAATTACAATTTCAAT
TTATTTAATCTCAACTCGTCCATATTCTTAATTCTATATATTTATTTATTTTTCCAGGTCTAACG
TTTTTCTTGGGCACGACTACGCCCAAGATTTAAGGACACAACAAGATGTTTTTCTTGTGAAATAT
AGAAGAAGTGGT
Found at i:70171666 original size:27 final size:24
Alignment explanation
Indices: 70171629--70171695 Score: 73
Period size: 27 Copynumber: 2.7 Consensus size: 24
70171619 AAAGCAAAAG
* *
70171629 AAAAATTTAAAACTAAAACTAACAT
1 AAAAATATAAAACTAAAAATAA-AT
*
70171654 AAAAAAATATAAAAATAAAAATAAAT
1 --AAAAATATAAAACTAAAAATAAAT
70171680 -AAAATATAAAACTAAA
1 AAAAATATAAAACTAAA
70171696 TGAAATCACT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.42
26 2 0.06
27 19 0.53
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (24 bp):
AAAAATATAAAACTAAAAATAAAT
Found at i:70171687 original size:23 final size:22
Alignment explanation
Indices: 70171652--70171695 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
70171642 TAAAACTAAC
70171652 ATAAAAAAATATAAAAATAAAA
1 ATAAAAAAATATAAAAATAAAA
*
70171674 ATAAATAAAATATAAAACTAAA
1 ATAAA-AAAATATAAAAATAAA
70171696 TGAAATCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (22 bp):
ATAAAAAAATATAAAAATAAAA
Found at i:70171696 original size:17 final size:17
Alignment explanation
Indices: 70171652--70171701 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
70171642 TAAAACTAAC
70171652 ATAAAAA-AATATAAAA-
1 ATAAAAATAA-ATAAAAT
70171668 ATAAAAATAAATAAAAT
1 ATAAAAATAAATAAAAT
* *
70171685 ATAAAACTAAATGAAAT
1 ATAAAAATAAATAAAAT
70171702 CACTTTGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 13 0.43
17 17 0.57
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (17 bp):
ATAAAAATAAATAAAAT
Found at i:70171701 original size:22 final size:21
Alignment explanation
Indices: 70171642--70171701 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 21
70171632 AATTTAAAAC
70171642 TAAAACTAACATAAA-AAAATA
1 TAAAACTAA-ATAAATAAAATA
*
70171663 TAAAAATAAAAATAAATAAAATA
1 TAAAACT--AAATAAATAAAATA
70171686 TAAAACTAAATGAAAT
1 TAAAACTAAAT-AAAT
70171702 CACTTTGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
21 10 0.30
22 9 0.27
23 14 0.42
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAAACTAAATAAATAAAATA
Found at i:70174042 original size:19 final size:20
Alignment explanation
Indices: 70174018--70174055 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70174008 GGTACCACCA
70174018 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70174037 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70174056 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70174394 original size:93 final size:93
Alignment explanation
Indices: 70174284--70174454 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70174274 GCCCCTAAGT
* *
70174284 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
70174349 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
70174377 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
70174442 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70174455 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70174451 original size:46 final size:46
Alignment explanation
Indices: 70174279--70174451 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
70174269 AACCCGCCCC
* * * *
70174279 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
70174325 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
70174373 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
70174418 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70174452 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:70179923 original size:19 final size:19
Alignment explanation
Indices: 70179899--70179938 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
70179889 CTTGGGCCAT
70179899 TGTGGGCCGAAATGGGC-CG
1 TGTGGGCC-AAATGGGCTCG
*
70179918 TGTGGGCCCAATGGGCTCG
1 TGTGGGCCAAATGGGCTCG
70179937 TG
1 TG
70179939 GGCCAACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.12, C:0.23, G:0.45, T:0.20
Consensus pattern (19 bp):
TGTGGGCCAAATGGGCTCG
Found at i:70180638 original size:32 final size:33
Alignment explanation
Indices: 70180583--70180659 Score: 113
Period size: 32 Copynumber: 2.4 Consensus size: 33
70180573 ATTTTGCACA
*
70180583 GTACTGATATTGAATAGGGCTTTGGC-CAAGACT
1 GTACTGATACTGAATAGGGCTTTGGCTC-AGACT
*
70180616 GTACTGATACTGAA-AGGGCTTTGGCTCAGATT
1 GTACTGATACTGAATAGGGCTTTGGCTCAGACT
70180648 GTACTGATACTG
1 GTACTGATACTG
70180660 GGTTATTCAC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
32 27 0.66
33 14 0.34
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (33 bp):
GTACTGATACTGAATAGGGCTTTGGCTCAGACT
Found at i:70183127 original size:14 final size:14
Alignment explanation
Indices: 70183108--70183136 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70183098 ATTGTGTTGC
70183108 TACGCAGTTGGTGT
1 TACGCAGTTGGTGT
70183122 TACGCAGTTGGTGT
1 TACGCAGTTGGTGT
70183136 T
1 T
70183137 GAAGACTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.34, T:0.38
Consensus pattern (14 bp):
TACGCAGTTGGTGT
Found at i:70188360 original size:21 final size:22
Alignment explanation
Indices: 70188336--70188378 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
70188326 GCTGCGATAT
70188336 TGGTGTGCTGG-TTGGTACGGG
1 TGGTGTGCTGGATTGGTACGGG
* *
70188357 TGGTGTGTTGGATTGTTACGGG
1 TGGTGTGCTGGATTGGTACGGG
70188379 ATGGGTTGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.07, C:0.07, G:0.49, T:0.37
Consensus pattern (22 bp):
TGGTGTGCTGGATTGGTACGGG
Found at i:70188437 original size:33 final size:33
Alignment explanation
Indices: 70188395--70188475 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
70188385 TGCATTTTGC
* *
70188395 ACTGTACTGATATTGAGTAGGGCTTTGGCCCAG
1 ACTGTACTGATACTGAATAGGGCTTTGGCCCAG
*
70188428 ACTGTACTGATACTGAATAGGGCTTTGGCTCAG
1 ACTGTACTGATACTGAATAGGGCTTTGGCCCAG
*
70188461 ACTGTGCTGATACTG
1 ACTGTACTGATACTG
70188476 TGTTATTCAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (33 bp):
ACTGTACTGATACTGAATAGGGCTTTGGCCCAG
Found at i:70192788 original size:49 final size:47
Alignment explanation
Indices: 70192522--70192872 Score: 495
Period size: 47 Copynumber: 7.4 Consensus size: 47
70192512 CTTCGGGACT
* * * *
70192522 TATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * * *
70192569 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGTCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * *
70192616 TATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* * *
70192663 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGACCC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
*
70192710 TATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
* *
70192757 TATCACATATATATATACTTTCACATTCATCACGTTGGCCACTCGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
*
70192806 TATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
*
70192855 TATCACATATATATACTT
1 TATCACATATATACACTT
70192873 GTACATCAAT
Statistics
Matches: 285, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 191 0.67
49 94 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGCCC
Found at i:70195951 original size:27 final size:26
Alignment explanation
Indices: 70195936--70196003 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
70195926 ATTAAGTCCG
70195936 CACACTCAGTGCTATATAATCAACTCA
1 CACACTCAGTGCTATAT-ATCAACTCA
* *
70195963 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTCAGTGCTATAT-ATC-AACTCA
*
70195991 CACACTTAGTGCT
1 CACACTCAGTGCT
70196004 GTACAATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (26 bp):
CACACTCAGTGCTATATATCAACTCA
Found at i:70195997 original size:28 final size:28
Alignment explanation
Indices: 70195934--70196031 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
70195924 ATATTAAGTC
*
70195934 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70195961 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70195989 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70196018 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70196032 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
29 19 0.31
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70210654 original size:21 final size:20
Alignment explanation
Indices: 70210622--70210660 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
70210612 CTTTGAAATA
70210622 GGGCACAAGCCCGTGTGGAT
1 GGGCACAAGCCCGTGTGGAT
*
70210642 GGGCTACACGCCCGTGTGG
1 GGGC-ACAAGCCCGTGTGG
70210661 TACTTGAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.15, C:0.28, G:0.41, T:0.15
Consensus pattern (20 bp):
GGGCACAAGCCCGTGTGGAT
Found at i:70272212 original size:68 final size:66
Alignment explanation
Indices: 70272140--70272311 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
70272130 CATCATGTGT
* * * *
70272140 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
70272203 TGTAG
62 TGTAG
** * *
70272208 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
70272273 AG
65 AG
* * * *
70272275 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
70272312 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:70272245 original size:64 final size:64
Alignment explanation
Indices: 70272164--70272347 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70272154 AGACATTATG
* * *
70272164 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
70272228 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70272293 AA
63 AA
* * * *
70272295 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTATTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
70272348 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70280027 original size:70 final size:72
Alignment explanation
Indices: 70279913--70280063 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
70279903 GGGGAATCAT
* *
70279913 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
70279977 GATATCG
66 GATATCG
***
70279984 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
70280048 GATATCG
66 GATATCG
70280055 CACTTAGCA
1 CACTTAGCA
70280064 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 28 0.38
71 46 0.62
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (72 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
GATATCG
Found at i:70280167 original size:104 final size:103
Alignment explanation
Indices: 70279983--70280205 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
70279973 AATGGATATC
70279983 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
70280048 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
70280086 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
70280151 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
70280190 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
70280206 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:70280567 original size:29 final size:29
Alignment explanation
Indices: 70280534--70280597 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
70280524 TAATCCACCA
70280534 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
70280563 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
70280593 CCCAA
1 CCCAA
70280598 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:70280571 original size:30 final size:30
Alignment explanation
Indices: 70280541--70280597 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
70280531 CCACCCAACT
70280541 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
70280570 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
70280598 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:70287659 original size:104 final size:104
Alignment explanation
Indices: 70287537--70287760 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
70287527 AATGGATATC
70287537 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
70287602 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
70287641 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
70287706 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
70287745 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
70287761 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:70288122 original size:29 final size:29
Alignment explanation
Indices: 70288089--70288152 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
70288079 TAATCCACCA
70288089 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
70288118 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
70288148 CCCAA
1 CCCAA
70288153 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:70288126 original size:30 final size:30
Alignment explanation
Indices: 70288096--70288152 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
70288086 CCACCCAACT
70288096 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
70288125 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
70288153 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:70293739 original size:13 final size:14
Alignment explanation
Indices: 70293709--70293742 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
70293699 GCACATGGGT
*
70293709 GTGTGGCTTGGCCC
1 GTGTGGCTAGGCCC
70293723 GTGTGGCTAGG-CC
1 GTGTGGCTAGGCCC
70293736 GTGTGGC
1 GTGTGGC
70293743 ACAAGTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.03, C:0.24, G:0.47, T:0.26
Consensus pattern (14 bp):
GTGTGGCTAGGCCC
Found at i:70295583 original size:21 final size:21
Alignment explanation
Indices: 70295559--70295600 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
70295549 AGTAAAAAAA
70295559 ATCCAAAAGTGTTTAGTAGCT
1 ATCCAAAAGTGTTTAGTAGCT
70295580 ATCCAAAAGTGTTTAGTAGCT
1 ATCCAAAAGTGTTTAGTAGCT
70295601 TTTATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (21 bp):
ATCCAAAAGTGTTTAGTAGCT
Found at i:70296209 original size:12 final size:12
Alignment explanation
Indices: 70296192--70296216 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70296182 CCTAACCTAT
70296192 TAGGCAAAGTTG
1 TAGGCAAAGTTG
70296204 TAGGCAAAGTTG
1 TAGGCAAAGTTG
70296216 T
1 T
70296217 TATTGGTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (12 bp):
TAGGCAAAGTTG
Found at i:70298224 original size:14 final size:14
Alignment explanation
Indices: 70298205--70298232 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70298195 TGACATTTAA
70298205 ATATATATAGAAAT
1 ATATATATAGAAAT
70298219 ATATATATAGAAAT
1 ATATATATAGAAAT
70298233 TGATTCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
ATATATATAGAAAT
Found at i:70299034 original size:12 final size:12
Alignment explanation
Indices: 70299017--70299045 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
70299007 CCTGATATTA
70299017 AGAGGGATTTTG
1 AGAGGGATTTTG
70299029 AGAGGGATTTTG
1 AGAGGGATTTTG
70299041 AGAGG
1 AGAGG
70299046 TGGGATCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.45, T:0.28
Consensus pattern (12 bp):
AGAGGGATTTTG
Found at i:70303913 original size:14 final size:14
Alignment explanation
Indices: 70303868--70303911 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
70303858 TAAGAATTTA
*
70303868 TTTTTC-GTTCTCT
1 TTTTTCTGTTCTTT
70303881 TTTTTCTGTTCTTT
1 TTTTTCTGTTCTTT
70303895 TTTTTCT-TT-TTT
1 TTTTTCTGTTCTTT
70303907 TTTTT
1 TTTTT
70303912 TTTTGGGGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 8 0.28
13 8 0.28
14 13 0.45
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.82
Consensus pattern (14 bp):
TTTTTCTGTTCTTT
Found at i:70316549 original size:28 final size:28
Alignment explanation
Indices: 70316476--70316550 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
70316466 TATATATATG
* *
70316476 TGGCACTTAGTGTGTGAAATATTGAGAA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
*
70316504 TGGCACTT-GATGTGCGAGATATTGAGTA
1 TGGCACTTAG-TGTGCGAGATATTGAGAA
70316532 TGGCACTTAGTGTGCGAGA
1 TGGCACTTAGTGTGCGAGA
70316551 CATCGAAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.02
28 40 0.95
29 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.32, T:0.31
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTGAGAA
Found at i:70319316 original size:36 final size:37
Alignment explanation
Indices: 70319222--70319319 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
70319212 GAGTATGTGT
* * *
70319222 AAGACTATAGCTGGGCTATGGCATCATGATGACATGA
1 AAGACCATAGTTGGGCTATGGCATTATGATGACATGA
*
70319259 AAGACCATAGTTGGGCTATGGCATTATGAT-ACGTGA
1 AAGACCATAGTTGGGCTATGGCATTATGATGACATGA
70319295 AAGACCAT-GTCTGGGAC-ATGGCATT
1 AAGACCATAGT-TGGG-CTATGGCATT
70319320 GATATGAGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
35 2 0.04
36 25 0.45
37 28 0.51
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (37 bp):
AAGACCATAGTTGGGCTATGGCATTATGATGACATGA
Found at i:70319342 original size:42 final size:42
Alignment explanation
Indices: 70319290--70319518 Score: 197
Period size: 42 Copynumber: 5.3 Consensus size: 42
70319280 CATTATGATA
* **
70319290 CGTGAAAGACCATGTCTGGGACATGGCATTGATATGAGATCC
1 CGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGATTT
* * * *
70319332 CGTGTAAGACCATATCTGAGATATGGCATCAGCATCGATATGAGATTA
1 CGTGTAAGACCATGTCTGGGACATGGCAT-----T-GATATGAGATTT
* * * * *
70319380 CGTGTAAGACTATATCTGGGATATGGCTTTGGTATGAGATTT
1 CGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGATTT
* * ** * *
70319422 TGTGTAAGACCGTGTCTGGGACGCGGCATCGATATGTGATTT
1 CGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGATTT
* * * * *
70319464 CGTATAAGACCATGTCTGGGACATGTCATCGATGTGAGACTT
1 CGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGATTT
70319506 CGTGTAAGACCAT
1 CGTGTAAGACCAT
70319519 AGTTGGACTA
Statistics
Matches: 149, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
42 111 0.74
43 1 0.01
47 1 0.01
48 36 0.24
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGATTT
Found at i:70319395 original size:48 final size:48
Alignment explanation
Indices: 70319315--70319406 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
70319305 CTGGGACATG
* *
70319315 GCATTGATATGAGATCCCGTGTAAGACCATATCTGAGATATGGCATCA
1 GCATCGATATGAGATCACGTGTAAGACCATATCTGAGATATGGCATCA
* * *
70319363 GCATCGATATGAGATTACGTGTAAGACTATATCTGGGATATGGC
1 GCATCGATATGAGATCACGTGTAAGACCATATCTGAGATATGGC
70319407 TTTGGTATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (48 bp):
GCATCGATATGAGATCACGTGTAAGACCATATCTGAGATATGGCATCA
Found at i:70319450 original size:90 final size:90
Alignment explanation
Indices: 70319288--70319451 Score: 193
Period size: 90 Copynumber: 1.8 Consensus size: 90
70319278 GGCATTATGA
*
70319288 TACGTGAAAGACCATGTCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGAGA
1 TACGTGAAAGACCATATCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGAGA
* *
70319353 TATGGCATCAGCATCGATATGAGAT
66 CACGGCATCAGCATCGATATGAGAT
* * * * * *** * * *
70319378 TACGTGTAAGACTATATCTGGGATATGGCTTTGGTATGAGATTTTGTGTAAGACCGTGTCTGGGA
1 TACGTGAAAGACCATATCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGAGA
*
70319443 CGCGGCATC
66 CACGGCATC
70319452 GATATGTGAT
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
90 59 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (90 bp):
TACGTGAAAGACCATATCTGGGACATGGCATTGATATGAGATCCCGTGTAAGACCATATCTGAGA
CACGGCATCAGCATCGATATGAGAT
Found at i:70320583 original size:47 final size:47
Alignment explanation
Indices: 70320524--70320626 Score: 179
Period size: 47 Copynumber: 2.2 Consensus size: 47
70320514 AATAGATAAG
*
70320524 TATTGTTTTTCTTTTGGTTTCTCTGAGAAAATCATCCGGATCTTTAT
1 TATTATTTTTCTTTTGGTTTCTCTGAGAAAATCATCCGGATCTTTAT
* *
70320571 TATTATTTTTCTTTTGGTTTCTTTGAGAAAATCATCTGGATCTTTAT
1 TATTATTTTTCTTTTGGTTTCTCTGAGAAAATCATCCGGATCTTTAT
70320618 TATTATTTT
1 TATTATTTT
70320627 CTTATGAGTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.20, C:0.12, G:0.13, T:0.55
Consensus pattern (47 bp):
TATTATTTTTCTTTTGGTTTCTCTGAGAAAATCATCCGGATCTTTAT
Found at i:70324526 original size:31 final size:31
Alignment explanation
Indices: 70324478--70324561 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
70324468 TCAGTCTCAA
*
70324478 CATAT-ACTAGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
70324508 CATATCACTGGGCTGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
70324539 CATATCACCGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
70324562 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:70324898 original size:11 final size:11
Alignment explanation
Indices: 70324874--70324903 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
70324864 ATATATGAAT
70324874 ATATCATG-GC
1 ATATCATGTGC
70324884 ATATCATGTGC
1 ATATCATGTGC
70324895 ATATCATGT
1 ATATCATGT
70324904 AAAGAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:70324971 original size:25 final size:25
Alignment explanation
Indices: 70324943--70324992 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
70324933 TAGCATATCT
* *
70324943 CTAGGGGTATAATGGTCATTTTCAC
1 CTAGGGGCAAAATGGTCATTTTCAC
*
70324968 CTAGGGGCAAAATGTTCATTTTCAC
1 CTAGGGGCAAAATGGTCATTTTCAC
70324993 GTTATAGGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (25 bp):
CTAGGGGCAAAATGGTCATTTTCAC
Found at i:70334219 original size:28 final size:28
Alignment explanation
Indices: 70334146--70334220 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
70334136 TATATAAATG
* * *
70334146 TGGCATTTAGTGTGCGAAATTTTGAGAA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
* *
70334174 TGGCACTTGGTGTGCGAGATATTGAGTA
1 TGGCACTTAGTGTGCGAGATATTGAGAA
70334202 TGGCACTTAGTGTGCGAGA
1 TGGCACTTAGTGTGCGAGA
70334221 CATCGAAGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.24, C:0.11, G:0.33, T:0.32
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGATATTGAGAA
Found at i:70337627 original size:21 final size:21
Alignment explanation
Indices: 70337603--70337645 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
70337593 AGCTATCCCA
70337603 TGCATCAATTTTTTCAATTGT
1 TGCATCAATTTTTTCAATTGT
70337624 TGCATCAATTTTTTCAATTGT
1 TGCATCAATTTTTTCAATTGT
70337645 T
1 T
70337646 CAGTTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.53
Consensus pattern (21 bp):
TGCATCAATTTTTTCAATTGT
Found at i:70340225 original size:39 final size:40
Alignment explanation
Indices: 70340148--70340294 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
70340138 TAGCTCCTCG
* * *
70340148 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
70340188 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
70340227 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
70340267 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
70340295 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:70340305 original size:80 final size:80
Alignment explanation
Indices: 70340194--70340374 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
70340184 CTCATTCAAT
* * *
70340194 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
70340257 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
70340273 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
70340337 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
70340354 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
70340375 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:70340334 original size:40 final size:40
Alignment explanation
Indices: 70340191--70340374 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
70340181 TAACTCATTC
* *
70340191 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
70340231 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
70340271 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
70340311 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
70340352 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70340375 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:70348070 original size:39 final size:40
Alignment explanation
Indices: 70347993--70348139 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
70347983 TAGCTCCTCG
* * *
70347993 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
70348033 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
70348072 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
70348112 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
70348140 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:70348150 original size:80 final size:80
Alignment explanation
Indices: 70348039--70348219 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
70348029 CTCATTCAAT
* * *
70348039 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
70348102 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
70348118 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
70348182 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
70348199 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
70348220 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:70348179 original size:40 final size:40
Alignment explanation
Indices: 70348036--70348219 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
70348026 TAACTCATTC
* *
70348036 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
70348076 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
70348116 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
70348156 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
70348197 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70348220 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:70351247 original size:30 final size:30
Alignment explanation
Indices: 70351197--70351258 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
70351187 TTTAAAGAGG
*
70351197 TTGCCTGCAAATCAAGTTAAACAAAATATA
1 TTGCCTGCAAATCAACTTAAACAAAATATA
* *
70351227 TTGCTTGCAAGTCAACTTAAACAAAATATA
1 TTGCCTGCAAATCAACTTAAACAAAATATA
70351257 TT
1 TT
70351259 TTCTTTTTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.31
Consensus pattern (30 bp):
TTGCCTGCAAATCAACTTAAACAAAATATA
Found at i:70352493 original size:36 final size:36
Alignment explanation
Indices: 70352446--70352517 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
70352436 TAATGACTAG
70352446 GTTGGATCAGTGGATGATATGCAAAGTACCTTCAGA
1 GTTGGATCAGTGGATGATATGCAAAGTACCTTCAGA
70352482 GTTGGATCAGTGGATGATATGCAAAGTACCTTCAGA
1 GTTGGATCAGTGGATGATATGCAAAGTACCTTCAGA
70352518 TATTTCTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (36 bp):
GTTGGATCAGTGGATGATATGCAAAGTACCTTCAGA
Found at i:70353233 original size:21 final size:21
Alignment explanation
Indices: 70353207--70353246 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70353197 TTCTTGAAAC
*
70353207 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
*
70353228 AGGGCAACATGCCCATGTG
1 AGGGCAACACGCCCATGTG
70353247 CTCATTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:70354576 original size:46 final size:46
Alignment explanation
Indices: 70354470--70354685 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 46
70354460 ACGTATCAGT
* * *
70354470 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTTGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATATCG-AG
* *
70354516 GCTGATGCATGTCCCAAACATGTCTTACACTGGCTTACATATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAG
* * * * * * * * *
70354562 GCCGATGCATGTCCCAGGCATGTCTGATACTAGCTTTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAG
* * *
70354608 GTCGATGCCATGTCCCTGACATGATCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCT-TACAT-ATCGAG
70354656 GCCGATGCATGTCCCAGACATGTCTTACAC
1 GCCGATGCATGTCCCAGACATGTCTTACAC
70354686 AAGCACACAA
Statistics
Matches: 134, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 61 0.46
47 27 0.20
48 18 0.13
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAG
Found at i:70371200 original size:40 final size:40
Alignment explanation
Indices: 70371143--70371346 Score: 268
Period size: 40 Copynumber: 5.1 Consensus size: 40
70371133 CGGATGATAA
* *
70371143 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
70371183 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
70371223 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
70371263 CCGGGTTAAGTCCCAAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* ** **
70371303 CCAGGCTAAGTCCCGAAGGCATTTGACCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70371343 CCGG
1 CCGG
70371347 TTGAATCCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 144 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70373103 original size:27 final size:27
Alignment explanation
Indices: 70373066--70373238 Score: 174
Period size: 27 Copynumber: 6.4 Consensus size: 27
70373056 TGGATAAGTT
*
70373066 GTAGAAATACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
70373093 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
** *
70373120 GTAGAATTATTGAAATACCCCTAT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
70373146 GATAGAATTACCGAAATA-CCCT-TATAG
1 G-TAGAATTACCGAAATACCCCTGTA-AG
* * *
70373173 GATAGAAATACCAAAATACCCCTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* **
70373201 GTAGAATTACC-AAGATACCCTTGTGGG
1 GTAGAATTACCGAA-ATACCCCTGTAAG
*
70373228 GTAAAATTACC
1 GTAGAATTACC
70373239 ATTTTGCCCC
Statistics
Matches: 125, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.01
26 8 0.06
27 108 0.86
28 6 0.05
29 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:70373125 original size:54 final size:54
Alignment explanation
Indices: 70373066--70373234 Score: 209
Period size: 54 Copynumber: 3.1 Consensus size: 54
70373056 TGGATAAGTT
*
70373066 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
* ** * *
70373120 GTAGAATTATTGAAATACCCCTAT-AGGATAGAATTACCGAAATACCCTTATAGG
1 GTAGAAATACCGAAATACCCCTGTAAGG-TAGAATTACCGAAATACCCTTGTAGG
* * * *
70373174 ATAGAAATACCAAAATACCCCTGTAGGGTAGAATTACC-AAGATACCCTTGTGGG
1 GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAA-ATACCCTTGTAGG
70373228 GTA-AAAT
1 GTAGAAAT
70373235 TACCATTTTG
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
53 9 0.09
54 85 0.89
55 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (54 bp):
GTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:70373219 original size:81 final size:81
Alignment explanation
Indices: 70373067--70373220 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
70373057 GGATAAGTTG
* * **
70373067 TAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTG
1 TAGAAATACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCC
70373132 AAATACCCCTATAGGA
66 AAATACCCCTATAGGA
*
70373148 TAGAATTACCGAAATA-CCCT-TATAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAATTA-
1 TAGAAATACCGAAATACCCCTGTA-AGG-TAGAAATACCAAAATACCCCTGTAGGGTAGAATTAT
70373210 CCAAGATACCC
64 CCAA-ATACCC
70373221 TTGTGGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
79 2 0.03
80 9 0.14
81 54 0.83
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (81 bp):
TAGAAATACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCC
AAATACCCCTATAGGA
Found at i:70373236 original size:81 final size:81
Alignment explanation
Indices: 70373073--70373238 Score: 203
Period size: 81 Copynumber: 2.0 Consensus size: 81
70373063 GTTGTAGAAA
* * **
70373073 TACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAATAC
1 TACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCCAAATAC
*
70373138 CCCTATAGGATAGAAT
66 CCCTATAGGATAAAAT
70373154 TACCGAAATA-CCCT-TATAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAATTA-CCAAGA
1 TACCGAAATACCCCTGTA-AGG-TAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCCAA-A
* * * *
70373216 TACCCTTGTGGGGTAAAAT
63 TACCCCTATAGGATAAAAT
70373235 TACC
1 TACC
70373239 ATTTTGCCCC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 2 0.03
80 9 0.12
81 62 0.85
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (81 bp):
TACCGAAATACCCCTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCCAAATAC
CCCTATAGGATAAAAT
Found at i:70373942 original size:26 final size:27
Alignment explanation
Indices: 70373913--70373972 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
70373903 CCACATATAT
*
70373913 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
70373939 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
70373966 ATATCTG
1 ATATCTG
70373973 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:70380633 original size:27 final size:27
Alignment explanation
Indices: 70380599--70380771 Score: 161
Period size: 27 Copynumber: 6.4 Consensus size: 27
70380589 TGGATAAGTT
* *
70380599 GTAGAATTATCGAAATACCTTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAAG
* *
70380626 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAAG
** *
70380653 GTAGAATTATTGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCTTGTAAG
* *
70380679 GATAGAATTACCGAAATACCCTTATAGG
1 G-TAGAATTACCGAAATACCCTTGTAAG
* **
70380707 GTAGAAATACCGAAATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAAG
* * **
70380734 GTAAAATTACC-ATTATACCCTTGTGGG
1 GTAGAATTACCGA-AATACCCTTGTAAG
*
70380761 GTAAAATTACC
1 GTAGAATTACC
70380772 ATTTTTCCCC
Statistics
Matches: 125, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 120 0.96
28 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAAG
Found at i:70380755 original size:54 final size:54
Alignment explanation
Indices: 70380599--70380744 Score: 193
Period size: 54 Copynumber: 2.7 Consensus size: 54
70380589 TGGATAAGTT
* * * *
70380599 GTAGAATTATCGAAATACCTTTGTAAGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGG
* * *
70380653 GTAGAATTATTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGG
* * * *
70380707 GTAGAAATACCGAAATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACC
70380745 ATTATACCCT
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGG
Found at i:70380763 original size:54 final size:54
Alignment explanation
Indices: 70380599--70380767 Score: 189
Period size: 54 Copynumber: 3.1 Consensus size: 54
70380589 TGGATAAGTT
* * * *
70380599 GTAGAATTATCGAAATACCTTTGTAAGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAAATATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * * * *
70380653 GTAGAATTATTGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTATAGG
1 GTAGAAATATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
* * * * *
70380707 GTAGAAATACCGAAATACCCTTGTGGGGTAAAATTACC-ATTATACCCTTGTGGG
1 GTAGAAATATCGAAATACCCTTGTAGGGTAGAATTACCGA-AATACCCTTGTAGG
70380761 GTA-AAAT
1 GTAGAAAT
70380768 TACCATTTTT
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
53 5 0.05
54 92 0.95
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (54 bp):
GTAGAAATATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:70380769 original size:81 final size:81
Alignment explanation
Indices: 70380603--70380771 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 81
70380593 TAAGTTGTAG
* * * * * **
70380603 AATTATCGAAATACCTTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATTGAAA
1 AATTACCGAAATACCCTTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAAAATTATCCAAA
*
70380668 TACCCCTGTAGGATAG
66 TACCCCTGTAGGATAA
* * * *
70380684 AATTACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCTTGTGGGGTAAAATTA-CCATT
1 AATTACCGAAATACCCTTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAAAATTATCCA-A
* * *
70380748 ATACCCTTGTGGGGTAA
65 ATACCCCTGTAGGATAA
70380765 AATTACC
1 AATTACC
70380772 ATTTTTCCCC
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 1 0.01
81 71 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (81 bp):
AATTACCGAAATACCCTTATAAGGTAGAAATACCGAAATACCCCTGTAGGGTAAAATTATCCAAA
TACCCCTGTAGGATAA
Found at i:70384135 original size:89 final size:89
Alignment explanation
Indices: 70383982--70384157 Score: 307
Period size: 89 Copynumber: 2.0 Consensus size: 89
70383972 GTCACACACG
*
70383982 ACCTAAGCATCTAGGGCCACGCCCGTGTCCCATGCCCGTGTTAATTAAATTCTAAATTCAAACCT
1 ACCTAAGCATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATTAAATTCTAAATTCAAACCT
* *
70384047 ATAAGGGTTTTCACATGGCCTGGC
66 ACAAGGGTTTTCACACGGCCTGGC
* *
70384071 ACCTAAGTATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATTAAATTCTAAATTCGAACCT
1 ACCTAAGCATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATTAAATTCTAAATTCAAACCT
70384136 ACAAGGGTTTTCACACGGCCTG
66 ACAAGGGTTTTCACACGGCCTG
70384158 ACACATACTC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 82 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (89 bp):
ACCTAAGCATCTAGGGACACGCCCGTGTCCCATGCCCGTGTTAATTAAATTCTAAATTCAAACCT
ACAAGGGTTTTCACACGGCCTGGC
Found at i:70385992 original size:68 final size:66
Alignment explanation
Indices: 70385920--70386068 Score: 176
Period size: 66 Copynumber: 2.2 Consensus size: 66
70385910 CATCATGTGT
* * * *
70385920 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACAAGTGAAGGACACCA
70385983 TGTAG
62 TGTAG
** * *
70385988 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCAAGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACAAGTGAAGGACACCATGTA
70386053 G
66 G
70386054 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70386069 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.34
65 5 0.07
66 28 0.40
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACAAGTGAAGGACACCATGTA
G
Found at i:70386025 original size:64 final size:64
Alignment explanation
Indices: 70385944--70386126 Score: 210
Period size: 66 Copynumber: 2.8 Consensus size: 64
70385934 AGACATTATG
* * *
70385944 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
70386008 ATGTAGCTAGGTCGCATGCGTGGTTCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
70386073 A
64 A
* * *
70386074 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
70386127 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
65 21 0.21
66 31 0.31
67 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70388872 original size:47 final size:46
Alignment explanation
Indices: 70388803--70388931 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 46
70388793 TACATCTTGA
* *
70388803 GGCCAATGCATGTCCTAGACATGTCTTACACTAGCTCTCGT-ATCAAT
1 GGCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAAT--AT
* * *
70388850 -GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTTTCATAATAT
1 GGCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATAATAT
70388897 GGCCGATGCATGTTCC-AGACATGTCTTACACTAGC
1 GGCCGATGCATG-TCCTAGACATGTCTTACACTAGC
70388932 ACACAAATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
46 17 0.24
47 26 0.37
48 25 0.36
49 2 0.03
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (46 bp):
GGCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATAT
Found at i:70388918 original size:94 final size:92
Alignment explanation
Indices: 70388718--70388931 Score: 238
Period size: 94 Copynumber: 2.3 Consensus size: 92
70388708 ATGCCGATGC
* * * *
70388718 CATGTCCTAGACATGGTTTTACA-TTGACTCATC-CATCAAGTCGATTCCATATCCCAGACATGT
1 CATGTCCTAGACAT-GTCTTACACTAG-CTC-TCGTATCAAGTCGATGCCATATCCCAGACATGT
**
70388781 CATACACTGGCTTACATCTTGAGGCCAATG
63 CATACACTGGCTTACATAATGAGGCCAATG
* *
70388811 CATGTCCTAGACATGTCTTACACTAGCTCTCGTATCAATGTCGATGCCATGTCCTAGACATGGTC
1 CATGTCCTAGACATGTCTTACACTAGCTCTCGTATCAA-GTCGATGCCATATCCCAGACAT-GTC
* * *
70388876 TTACACTGGCTTTCATAAT-ATGGCCGATG
64 ATACACTGGCTTACATAATGA-GGCCAATG
70388905 CATGTTCC-AGACATGTCTTACACTAGC
1 CATG-TCCTAGACATGTCTTACACTAGC
70388932 ACACAAATAA
Statistics
Matches: 104, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
91 2 0.02
92 15 0.14
93 36 0.35
94 48 0.46
95 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (92 bp):
CATGTCCTAGACATGTCTTACACTAGCTCTCGTATCAAGTCGATGCCATATCCCAGACATGTCAT
ACACTGGCTTACATAATGAGGCCAATG
Found at i:70395426 original size:27 final size:27
Alignment explanation
Indices: 70395388--70395446 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
70395378 ATTTAGGTTC
* *
70395388 ACACTGGCTGTCACATGGCCGTGTGCA
1 ACACAGGCTGTCACATGGCCGTATGCA
*
70395415 ACACAGGCTGTCACATGGCCGTATGCC
1 ACACAGGCTGTCACATGGCCGTATGCA
70395442 ACACA
1 ACACA
70395447 TGATCGCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (27 bp):
ACACAGGCTGTCACATGGCCGTATGCA
Found at i:70400397 original size:12 final size:12
Alignment explanation
Indices: 70400380--70400430 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
70400370 ATTTTAGTAG
70400380 TTTAATATTAA-A
1 TTTAAT-TTAATA
70400392 TTTAATTTAATA
1 TTTAATTTAATA
70400404 TTT-ATCTTAATA
1 TTTAAT-TTAATA
*
70400416 GTATAATTTAATA
1 -TTTAATTTAATA
70400429 TT
1 TT
70400431 AAAGTGATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 6 0.18
12 17 0.52
13 8 0.24
14 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (12 bp):
TTTAATTTAATA
Found at i:70406515 original size:31 final size:31
Alignment explanation
Indices: 70406477--70406540 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
70406467 AATAAATAAA
70406477 GTTAATTTCACATTTCACTATTATGTCTTTT
1 GTTAATTTCACATTTCACTATTATGTCTTTT
*
70406508 GTTAATTTCACATTTCACTATTTTGTCTTTT
1 GTTAATTTCACATTTCACTATTATGTCTTTT
70406539 GT
1 GT
70406541 ATTTTCTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (31 bp):
GTTAATTTCACATTTCACTATTATGTCTTTT
Found at i:70407851 original size:19 final size:20
Alignment explanation
Indices: 70407814--70407851 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70407804 GTAATTGAAC
*
70407814 TTTAAAATTGGACTTGAGAT
1 TTTAAAATTGGACTCGAGAT
*
70407834 TTTAAATTTGG-CTCGAGA
1 TTTAAAATTGGACTCGAGA
70407852 GTCCAAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (20 bp):
TTTAAAATTGGACTCGAGAT
Found at i:70408191 original size:19 final size:19
Alignment explanation
Indices: 70408167--70408234 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
70408157 ATTCCAAAAA
*
70408167 TAATATTATTTTAATAGTT
1 TAATATTATTTTAATAATT
* *
70408186 TAATATTAAATTTAACTTATTT
1 TAATATT-ATTTTAA--TAATT
* *
70408208 TAATAGTATTTTATTAATT
1 TAATATTATTTTAATAATT
70408227 TAATATTA
1 TAATATTA
70408235 AAGTGATTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 18 0.46
20 6 0.15
21 5 0.13
22 10 0.26
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (19 bp):
TAATATTATTTTAATAATT
Found at i:70408223 original size:30 final size:29
Alignment explanation
Indices: 70408172--70408229 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
70408162 AAAAATAATA
70408172 TTATTTTAATAGTTTAATATTAAATTTAAC
1 TTATTTTAATAGTTTAATATT-AATTTAAC
*
70408202 TTATTTTAATAGTATT-TTATTAATTTAA
1 TTATTTTAATAGT-TTAATATTAATTTAA
70408230 TATTAAAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 7 0.27
30 17 0.65
31 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (29 bp):
TTATTTTAATAGTTTAATATTAATTTAAC
Found at i:70412711 original size:50 final size:50
Alignment explanation
Indices: 70412651--70412791 Score: 153
Period size: 50 Copynumber: 2.8 Consensus size: 50
70412641 TACTTAAATA
* *
70412651 TAATTAACATAT-AAGATGCATAAATGCATGGCTTAA-TTAAAATGCAAACT
1 TAATTAACATATGAA-ATGCAT-AATGCATGACATAATTTAAAATGCAAACT
* * * *
70412701 TATTTAACATATGAATTTCATAATGCATGACATAATTTAAGATGCAAACT
1 TAATTAACATATGAAATGCATAATGCATGACATAATTTAAAATGCAAACT
* * * *
70412751 TAATTAACATATGAATTACATAATACTTGACATAA-TTAAAA
1 TAATTAACATATGAAATGCATAATGCATGACATAATTTAAAA
70412792 CACAATTAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
49 17 0.22
50 59 0.76
51 2 0.03
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.33
Consensus pattern (50 bp):
TAATTAACATATGAAATGCATAATGCATGACATAATTTAAAATGCAAACT
Found at i:70413891 original size:13 final size:14
Alignment explanation
Indices: 70413854--70413896 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
70413844 TACTTATATA
70413854 ATAAATTATTC-AT
1 ATAAATTATTCAAT
*
70413867 ATAATTTAATTCAAT
1 ATAAATT-ATTCAAT
70413882 A-AAATTATTCAAT
1 ATAAATTATTCAAT
70413895 AT
1 AT
70413897 TAAAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 14 0.56
14 8 0.32
15 3 0.12
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAAATTATTCAAT
Done.