Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 212 of 332
Found at i:70414063 original size:16 final size:16
Alignment explanation
Indices: 70413981--70414070 Score: 55
Period size: 16 Copynumber: 5.6 Consensus size: 16
70413971 TTTAAAAAAT
*
70413981 ATATTAATATTCTAATA
1 ATATAAATATT-TAATA
70413998 ATAT--ATATTTCAAT-
1 ATATAAATATTT-AATA
* *
70414012 TTATAAATATTTAGTA
1 ATATAAATATTTAATA
* *
70414028 A-A-AAATTATAGTATTAA
1 ATATAAA-TAT-TTAAT-A
70414045 ATATAAATATTTAATA
1 ATATAAATATTTAATA
70414061 ATATAAATAT
1 ATATAAATAT
70414071 GGGTATTTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 19
0.69 0.08 0.23
Matches are distributed among these distances:
14 7 0.12
15 14 0.25
16 20 0.35
17 9 0.16
18 4 0.07
19 3 0.05
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
ATATAAATATTTAATA
Found at i:70417136 original size:149 final size:150
Alignment explanation
Indices: 70416866--70417163 Score: 508
Period size: 149 Copynumber: 2.0 Consensus size: 150
70416856 AACTCAAAAT
* *
70416866 GGTCTTACTGGAAAATAAATAAAATAAATTAGGGGAGCTGAAAATGTTTGGAAATTAAATAAGCG
1 GGTCTTACTAGAAAATAAATAAAATAAATTAGGGGAGCTGAAAATGTCTGGAAATTAAATAAGCG
*
70416931 AGATAGCAAAAATATAAAATTATATAAATCTAAAATAAAATAAAATTAGAAAATGAATTTGAATT
66 AGATAGCAAAAATATAAAATTATATAAATCAAAAATAAAATAAAATTAGAAAATGAATTTGAATT
70416996 TT-TAAACAAAATTATAAAC
131 TTGTAAACAAAATTATAAAC
* *
70417015 GGTCTTACTAGAAAATAAATAAAATAAATTAGGGGAGTTGAAAATGTCTGGAAATTAAATAAGTG
1 GGTCTTACTAGAAAATAAATAAAATAAATTAGGGGAGCTGAAAATGTCTGGAAATTAAATAAGCG
* *
70417080 AGATAGCATAAATATACAATTATATAAATCAAAAATAAAATAAAATTAGAAAATGAATTTGAATT
66 AGATAGCAAAAATATAAAATTATATAAATCAAAAATAAAATAAAATTAGAAAATGAATTTGAATT
* *
70417145 TTGTAAACAGACTTATAAA
131 TTGTAAACAAAATTATAAA
70417164 GCCTTAGCCC
Statistics
Matches: 139, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
149 125 0.90
150 14 0.10
ACGTcount: A:0.52, C:0.05, G:0.14, T:0.29
Consensus pattern (150 bp):
GGTCTTACTAGAAAATAAATAAAATAAATTAGGGGAGCTGAAAATGTCTGGAAATTAAATAAGCG
AGATAGCAAAAATATAAAATTATATAAATCAAAAATAAAATAAAATTAGAAAATGAATTTGAATT
TTGTAAACAAAATTATAAAC
Found at i:70418463 original size:93 final size:93
Alignment explanation
Indices: 70418304--70418497 Score: 352
Period size: 93 Copynumber: 2.1 Consensus size: 93
70418294 GATATTGAAG
70418304 AGGGTCGCTGGACCTAATTCTTGATCTAGCGGCCGAGGGTCGGCAACTGAGCAACTCCGATCTAA
1 AGGGTCGCTGGACCTAATTCTTGATCTAGCGGCCGAGGGTCGGCAACTGAGCAACTCCGATCTAA
*
70418369 TAAAGCTGGGTTGTTTAAGGGTGTCACA
66 TAAAGCTGAGTTGTTTAAGGGTGTCACA
*
70418397 AGGGTCGCTGGACCTAATTCTTGATCTAGCGGTCGAGGGTCGGCAACTGAGCAACTCCGATCTAA
1 AGGGTCGCTGGACCTAATTCTTGATCTAGCGGCCGAGGGTCGGCAACTGAGCAACTCCGATCTAA
*
70418462 TAAATCTGAGTTGTTTAAGGGTGTCACA
66 TAAAGCTGAGTTGTTTAAGGGTGTCACA
*
70418490 AGAGTCGC
1 AGGGTCGC
70418498 CCCTAATGTC
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 97 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (93 bp):
AGGGTCGCTGGACCTAATTCTTGATCTAGCGGCCGAGGGTCGGCAACTGAGCAACTCCGATCTAA
TAAAGCTGAGTTGTTTAAGGGTGTCACA
Found at i:70424095 original size:35 final size:35
Alignment explanation
Indices: 70424049--70424134 Score: 120
Period size: 35 Copynumber: 2.5 Consensus size: 35
70424039 TGATTTGTAC
* *
70424049 ATCTGTATCTGTATCTG-ATATGGGCTTACGCCCGA
1 ATCTGTATCTGTATCTGTA-ATGGGCTTAAGCCCAA
*
70424084 ATCTGTATCTGTATTTGTAATGGGCTTAAGCCCAA
1 ATCTGTATCTGTATCTGTAATGGGCTTAAGCCCAA
*
70424119 ATTTGTATCTGTATCT
1 ATCTGTATCTGTATCT
70424135 AACTGAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
35 44 0.98
36 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.40
Consensus pattern (35 bp):
ATCTGTATCTGTATCTGTAATGGGCTTAAGCCCAA
Found at i:70428319 original size:32 final size:32
Alignment explanation
Indices: 70428278--70428341 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
70428268 CTTCTCGTCG
*
70428278 AATTTCCTCA-AGTTCTTGAATATGTAATTTTC
1 AATTTCCTCACA-TTCCTGAATATGTAATTTTC
70428310 AATTTCCTCACATTCCTGAATATGTAATTTTC
1 AATTTCCTCACATTCCTGAATATGTAATTTTC
70428342 TATACTTACC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.45
Consensus pattern (32 bp):
AATTTCCTCACATTCCTGAATATGTAATTTTC
Found at i:70430226 original size:19 final size:19
Alignment explanation
Indices: 70430196--70430253 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
70430186 ATTTTAAAAT
70430196 CAAGTGCAAATGATTTTAAC
1 CAAGT-CAAATGATTTTAAC
* *
70430216 CAAGTCAAATGATTTCAAT
1 CAAGTCAAATGATTTTAAC
* *
70430235 CAAGTTAAAATCATTTTAA
1 CAAG-TCAAATGATTTTAA
70430254 AATGATTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (19 bp):
CAAGTCAAATGATTTTAAC
Found at i:70440955 original size:20 final size:20
Alignment explanation
Indices: 70440930--70440981 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
70440920 AATCAAGTGC
70440930 AAATGATTTTAACCAAATCA
1 AAATGATTTTAACCAAATCA
* * * *
70440950 AAATGATTTAAATCAAGTTA
1 AAATGATTTTAACCAAATCA
*
70440970 AAATCATTTTAA
1 AAATGATTTTAA
70440982 AATGATTTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.35
Consensus pattern (20 bp):
AAATGATTTTAACCAAATCA
Found at i:70443026 original size:20 final size:21
Alignment explanation
Indices: 70443001--70443040 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
70442991 CACCTGAAGT
* *
70443001 AGGGC-ACACGCCCTTGTGGA
1 AGGGCAACACACCCGTGTGGA
70443021 AGGGCAACACACCCGTGTGG
1 AGGGCAACACACCCGTGTGG
70443041 CCATTATGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTGGA
Found at i:70444341 original size:48 final size:48
Alignment explanation
Indices: 70444238--70444356 Score: 127
Period size: 48 Copynumber: 2.5 Consensus size: 48
70444228 AATGCTGACG
*
70444238 CCATGTCCCAGACATGGTCTTACACTAGCTAGCATATTAAAGTCGATGT
1 CCATGTCCCAGACA-GGTCTTACACTAACTAGCATATTAAAGTCGATGT
* ** * *
70444287 -CGTGTCCCAGACAGGTCTTACACTAACTTTCATATATCTAGGT-GAT-T
1 CCATGTCCCAGACAGGTCTTACACTAACTAGCATAT-T-AAAGTCGATGT
*
70444334 CCATGTCCCAGACAGGTTTTACA
1 CCATGTCCCAGACAGGTCTTACA
70444357 TTGGCTCTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
47 20 0.34
48 36 0.61
49 3 0.05
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
CCATGTCCCAGACAGGTCTTACACTAACTAGCATATTAAAGTCGATGT
Found at i:70450788 original size:20 final size:21
Alignment explanation
Indices: 70450763--70450802 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70450753 CACTTGAAGC
*
70450763 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCCTGTGGA
70450783 AGGGCAACACGCCCCTGTGG
1 AGGGCAACACGCCCCTGTGG
70450803 CCATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.33, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCCTGTGGA
Found at i:70452132 original size:48 final size:47
Alignment explanation
Indices: 70452040--70452350 Score: 153
Period size: 48 Copynumber: 6.6 Consensus size: 47
70452030 ACATTAAAAT
* * ** *
70452040 CGATGTCATGTCCTAGACAAGTCTTACACTAACTTTCATATATCGAGG
1 CGATG-CATGTCCCAGACAAGTCTTACACTAGCACTCATCTATCGAGG
*
70452088 TGATGCCATGTCCCAGACAAGTCTTACACTAGCACTCATCTATCG-GTG
1 CGATG-CATGTCCCAGACAAGTCTTACACTAGCACTCATCTATCGAG-G
* * * * * *
70452136 TCGATACCATATCCCAAACAGGTCTTACACT-G-A-TACA-C-AAC-AAG
1 -CGAT-GCATGTCCCAGACAAGTCTTACACTAGCACT-CATCTATCGAGG
* * * * * * *
70452180 CTGATGACATATCCCAGACAGGCCTTACACTAGC-TTGTATATCTCGAGG
1 C-GATG-CATGTCCCAGACAAGTCTTACACTAGCACT-CATCTATCGAGG
* * * * * *
70452229 CCGATGCATTTCCCAGACATGTGTTACACTAGCTCTCATC--TCAATGC
1 -CGATGCATGTCCCAGACAAGTCTTACACTAGCACTCATCTATCGA-GG
* * *
70452276 CGATGCATGTCCCAGA-AACGTCTTACACTGGCACTCAT-GAT-GTGG
1 CGATGCATGTCCCAGACAA-GTCTTACACTAGCACTCATCTATCGAGG
*
70452321 CCGATGCATGTCCCAGACATGTCTTACACT
1 -CGATGCATGTCCCAGACAAGTCTTACACT
70452351 GGCTCACATA
Statistics
Matches: 201, Mismatches: 41, Indels: 44
0.70 0.14 0.15
Matches are distributed among these distances:
43 1 0.00
44 26 0.13
45 5 0.02
46 64 0.32
47 7 0.03
48 66 0.33
49 31 0.15
50 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCATGTCCCAGACAAGTCTTACACTAGCACTCATCTATCGAGG
Found at i:70452289 original size:46 final size:46
Alignment explanation
Indices: 70452227--70452355 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 46
70452217 TATATCTCGA
* * *
70452227 GGCCGATGCATTTCCCAGACATGTGTTACACTAGCTCTCATC-TCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCAT--AT
* * * * *
70452274 -GCCGATGCATGTCCCAGAAACGTCTTACACTGGCACTCATGATGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCATAT
70452319 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
70452356 ACATACCACC
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 67 0.97
47 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCATAT
Found at i:70460700 original size:27 final size:25
Alignment explanation
Indices: 70460659--70460731 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 25
70460649 TCTTATTCCA
* * *
70460659 ATTTTACTTCAGTAAAATTTTGACG
1 ATTTTCCTTCGGTAAAATTTTGAAG
70460684 ATTTTACCCTTCGGTAAAATTTTGAAG
1 ATTTT--CCTTCGGTAAAATTTTGAAG
*
70460711 ATTTTCCTCCTGGTAAAATTT
1 ATTTTCCTTC-GGTAAAATTT
70460732 CGAGAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 9 0.22
26 10 0.24
27 22 0.54
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (25 bp):
ATTTTCCTTCGGTAAAATTTTGAAG
Found at i:70460890 original size:12 final size:12
Alignment explanation
Indices: 70460873--70460907 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
70460863 TAGGATTGCA
*
70460873 AATTTCAATTTC
1 AATTTCCATTTC
70460885 AATTTCCATTTC
1 AATTTCCATTTC
*
70460897 CATTTCCATTT
1 AATTTCCATTT
70460908 TTGGAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (12 bp):
AATTTCCATTTC
Found at i:70463414 original size:33 final size:33
Alignment explanation
Indices: 70463377--70463451 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
70463367 CCTTGCCATA
* *
70463377 GTCTTACACTC-GTAATGCCATAACCTAGTTATG
1 GTCTTACACTCAG-AATGCCATAACCCAGCTATG
* *
70463410 GTCTTATCA-TCAGGATGCCATAGCCCAGCTATG
1 GTCTTA-CACTCAGAATGCCATAACCCAGCTATG
70463443 GTCTTACAC
1 GTCTTACAC
70463452 GTATATACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
32 2 0.06
33 30 0.86
34 3 0.09
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (33 bp):
GTCTTACACTCAGAATGCCATAACCCAGCTATG
Found at i:70468001 original size:14 final size:14
Alignment explanation
Indices: 70467982--70468008 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70467972 GCTATCGTTT
70467982 TACTATTTTGTTGC
1 TACTATTTTGTTGC
70467996 TACTATTTTGTTG
1 TACTATTTTGTTG
70468009 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.59
Consensus pattern (14 bp):
TACTATTTTGTTGC
Found at i:70469056 original size:15 final size:14
Alignment explanation
Indices: 70469020--70469059 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
70469010 AACTTTCAAT
**
70469020 ACTTATTTTTTTAC
1 ACTTATTTTTCGAC
70469034 ACTTATTTTTCGAC
1 ACTTATTTTTCGAC
70469048 ACTTAATTTTTC
1 ACTT-ATTTTTC
70469060 AATTTATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.23, C:0.17, G:0.03, T:0.57
Consensus pattern (14 bp):
ACTTATTTTTCGAC
Found at i:70472877 original size:17 final size:18
Alignment explanation
Indices: 70472855--70472888 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
70472845 AGTTGAAATC
70472855 CTTTTATTTTT-TTCTTT
1 CTTTTATTTTTCTTCTTT
70472872 CTTTTATTTTTCTTCTT
1 CTTTTATTTTTCTTCTT
70472889 CGTCCGTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (18 bp):
CTTTTATTTTTCTTCTTT
Found at i:70478343 original size:11 final size:11
Alignment explanation
Indices: 70478329--70478361 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
70478319 AAATTTATAC
70478329 ACAATTATAAA
1 ACAATTATAAA
70478340 ACAATTATAAA
1 ACAATTATAAA
*
70478351 A-TATTATAAA
1 ACAATTATAAA
70478361 A
1 A
70478362 ATTTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (11 bp):
ACAATTATAAA
Found at i:70478573 original size:21 final size:21
Alignment explanation
Indices: 70478544--70478584 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70478534 TAAGATAAAT
70478544 AAATATTTATC-TTACTATTTA
1 AAATATTTATCATTA-TATTTA
*
70478565 AAATTTTTATCATTATATTT
1 AAATATTTATCATTATATTT
70478585 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (21 bp):
AAATATTTATCATTATATTTA
Found at i:70486458 original size:22 final size:23
Alignment explanation
Indices: 70486433--70486475 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
70486423 CAATGCCCTC
70486433 TTTTATTATTCA-ATTTATTGGA
1 TTTTATTATTCATATTTATTGGA
*
70486455 TTTTATTATTCATTTTTATTG
1 TTTTATTATTCATATTTATTG
70486476 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (23 bp):
TTTTATTATTCATATTTATTGGA
Found at i:70490136 original size:15 final size:16
Alignment explanation
Indices: 70490110--70490147 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
70490100 TACTATTTAA
70490110 AAAATATTAAAAATTT
1 AAAATATTAAAAATTT
*
70490126 AAAAT-TTAAAATTTT
1 AAAATATTAAAAATTT
70490141 AAAATAT
1 AAAATAT
70490148 ATTTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAATATTAAAAATTT
Found at i:70495678 original size:33 final size:33
Alignment explanation
Indices: 70495607--70495679 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
70495597 GTTAAATGTT
*
70495607 AGTGACAATGTTTTGCTAAAAATGAAAATATAC
1 AGTGATAATGTTTTGCTAAAAATGAAAATATAC
*
70495640 AGTGATAATGTTTTGCTAAAAATGAAAATATGC
1 AGTGATAATGTTTTGCTAAAAATGAAAATATAC
70495673 AGTGATA
1 AGTGATA
70495680 GTGCAAGGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.32
Consensus pattern (33 bp):
AGTGATAATGTTTTGCTAAAAATGAAAATATAC
Found at i:70496149 original size:39 final size:39
Alignment explanation
Indices: 70496106--70496243 Score: 240
Period size: 39 Copynumber: 3.5 Consensus size: 39
70496096 AACATGTTTT
*
70496106 TGAGTATTGTGATATATACTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
70496145 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
70496184 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
70496223 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
70496244 AAAAGTGAAT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.29, C:0.03, G:0.22, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:70496157 original size:17 final size:17
Alignment explanation
Indices: 70496135--70496201 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 17
70496125 TTGAATGTTA
70496135 TGTGATTATATGAGTAT
1 TGTGATTATATGAGTAT
*
70496152 TGTGATATATGCTTGAATGT-T
1 TGTGAT-TAT--ATG-A-GTAT
70496173 ATGTGATTATATGAGTAT
1 -TGTGATTATATGAGTAT
70496191 TGTGA-TATATG
1 TGTGATTATATG
70496202 CTTAAATGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
16 6 0.15
17 13 0.32
18 5 0.12
19 2 0.05
20 2 0.05
21 5 0.12
22 8 0.20
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.46
Consensus pattern (17 bp):
TGTGATTATATGAGTAT
Found at i:70496268 original size:39 final size:38
Alignment explanation
Indices: 70496152--70496261 Score: 94
Period size: 39 Copynumber: 2.8 Consensus size: 38
70496142 ATATGAGTAT
* * * * * * *
70496152 TGTGATATATGCTTGAATGTTATGTGATTATATGAGTAT
1 TGTGATATATGCTTAAAAGTAATATGATTACA-GTGTAA
* * * *
70496191 TGTGATATATGCTTAAATGTTATGTGATTATATGTGTAA
1 TGTGATATATGCTTAAAAGTAATATGATTACA-GTGTAA
70496230 TGTGATATATGCTTAAAAGTGAATATGATTAC
1 TGTGATATATGCTTAAAAGT-AATATGATTAC
70496262 CATGTAAAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 55 0.87
40 8 0.13
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.44
Consensus pattern (38 bp):
TGTGATATATGCTTAAAAGTAATATGATTACAGTGTAA
Found at i:70496925 original size:12 final size:12
Alignment explanation
Indices: 70496908--70496932 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70496898 CGATACTCAA
70496908 GGTAATTTTATC
1 GGTAATTTTATC
70496920 GGTAATTTTATC
1 GGTAATTTTATC
70496932 G
1 G
70496933 ATACTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (12 bp):
GGTAATTTTATC
Found at i:70497574 original size:14 final size:15
Alignment explanation
Indices: 70497550--70497580 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
70497540 ACTAAATAGG
70497550 AAAGAAAAGAAAGAA
1 AAAGAAAAGAAAGAA
70497565 AAAG-AAAGAAAGAA
1 AAAGAAAAGAAAGAA
70497579 AA
1 AA
70497581 GAGAGACGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAGAA
Found at i:70498345 original size:16 final size:16
Alignment explanation
Indices: 70498320--70498353 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70498310 ATGAATATAT
* *
70498320 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
70498336 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
70498352 AT
1 AT
70498354 TGGATATTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:70498824 original size:26 final size:26
Alignment explanation
Indices: 70498784--70498843 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
70498774 TGAAGTGGAT
*
70498784 ATGAAATGGATAATGCCATTTTGTAA
1 ATGAAATGGATAATGCCATTGTGTAA
*
70498810 ATGGAATGGATAATGCCATTGTGTAA
1 ATGAAATGGATAATGCCATTGTGTAA
70498836 ATGAAATG
1 ATGAAATG
70498844 TGAATCAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (26 bp):
ATGAAATGGATAATGCCATTGTGTAA
Found at i:70503854 original size:42 final size:42
Alignment explanation
Indices: 70503795--70503891 Score: 185
Period size: 42 Copynumber: 2.3 Consensus size: 42
70503785 GATGCCACAT
*
70503795 GGGCGTGTGGTCGCCCATGTGGTAGGCCGTGAGGAAGTATAC
1 GGGCGTGTGGTCGCCCATGTGGTAGGCCGTGAGGAAGTACAC
70503837 GGGCGTGTGGTCGCCCATGTGGTAGGCCGTGAGGAAGTACAC
1 GGGCGTGTGGTCGCCCATGTGGTAGGCCGTGAGGAAGTACAC
70503879 GGGCGTGTGGTCG
1 GGGCGTGTGGTCG
70503892 ACGAACTAGG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.14, C:0.20, G:0.45, T:0.21
Consensus pattern (42 bp):
GGGCGTGTGGTCGCCCATGTGGTAGGCCGTGAGGAAGTACAC
Found at i:70513715 original size:15 final size:15
Alignment explanation
Indices: 70513695--70513724 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70513685 AAGTATCATA
70513695 TTAATTTTAATTAAT
1 TTAATTTTAATTAAT
*
70513710 TTAATTTTACTTAAT
1 TTAATTTTAATTAAT
70513725 CAAAATCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (15 bp):
TTAATTTTAATTAAT
Found at i:70515247 original size:21 final size:21
Alignment explanation
Indices: 70515221--70515265 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
70515211 AAGGTTTTTG
*
70515221 TTCCCTTATCCTTATTTAATA
1 TTCCCTTATCCTGATTTAATA
70515242 TTCCCTTATCCTGATTTAATA
1 TTCCCTTATCCTGATTTAATA
70515263 TTC
1 TTC
70515266 AAAGTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.02, T:0.51
Consensus pattern (21 bp):
TTCCCTTATCCTGATTTAATA
Found at i:70517486 original size:21 final size:21
Alignment explanation
Indices: 70517462--70517505 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
70517452 TATAGGTATT
* * *
70517462 ATTTTGATAAATATATATTAA
1 ATTTTAATAAACATATAATAA
70517483 ATTTTAATAAACATATAATAA
1 ATTTTAATAAACATATAATAA
70517504 AT
1 AT
70517506 AATTATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTTTAATAAACATATAATAA
Found at i:70519330 original size:15 final size:15
Alignment explanation
Indices: 70519307--70519337 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70519297 TTACACTAAC
*
70519307 TATAGTATTTAAAAA
1 TATAATATTTAAAAA
70519322 TATAATATTTAAAAA
1 TATAATATTTAAAAA
70519337 T
1 T
70519338 GAAAGGTGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
TATAATATTTAAAAA
Found at i:70521268 original size:6 final size:6
Alignment explanation
Indices: 70521227--70521267 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
70521217 TCATTACCCT
* * *
70521227 TTGCCT TTGCCA TTGCCA TTGCCA TTGCCC TTGCCC TTGCC
1 TTGCCA TTGCCA TTGCCA TTGCCA TTGCCA TTGCCA TTGCC
70521268 CGCATCATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.07, C:0.39, G:0.17, T:0.37
Consensus pattern (6 bp):
TTGCCA
Found at i:70524135 original size:8 final size:8
Alignment explanation
Indices: 70524124--70524229 Score: 56
Period size: 9 Copynumber: 12.6 Consensus size: 8
70524114 TTAAAAATTT
70524124 TAAAAATA
1 TAAAAATA
70524132 TAAAAAATA
1 T-AAAAATA
*
70524141 CAAAAAATGTA
1 -TAAAAA--TA
*
70524152 AAAAAATTA
1 TAAAAA-TA
*
70524161 TAAAATTA
1 TAAAAATA
70524169 TTAAAAATGA
1 -TAAAAAT-A
70524179 -AAAAATA
1 TAAAAATA
*
70524186 TTAAAATA
1 TAAAAATA
*
70524194 CAAAAATA
1 TAAAAATA
*
70524202 T-AAATTA
1 TAAAAATA
*
70524209 TATAAACTA
1 TA-AAAATA
70524218 TAAAAATA
1 TAAAAATA
70524226 -AAAA
1 TAAAA
70524230 TTATGAAATA
Statistics
Matches: 77, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
7 11 0.14
8 26 0.34
9 31 0.40
10 7 0.09
11 2 0.03
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (8 bp):
TAAAAATA
Found at i:70524137 original size:9 final size:9
Alignment explanation
Indices: 70524106--70524205 Score: 55
Period size: 9 Copynumber: 11.2 Consensus size: 9
70524096 TATATCGTAC
*
70524106 AAAAATATTT
1 AAAAATA-TA
* *
70524116 AAAAATTTT
1 AAAAATATA
70524125 AAAAATATA
1 AAAAATATA
*
70524134 AAAAATACA
1 AAAAATATA
*
70524143 AAAAATGTA
1 AAAAATATA
70524152 AAAAA-ATTA
1 AAAAATA-TA
* *
70524161 TAAAATTATT
1 -AAAAATATA
*
70524171 AAAAAT-GA
1 AAAAATATA
70524179 AAAAATAT-
1 AAAAATATA
* *
70524187 TAAAATA-C
1 AAAAATATA
70524195 AAAAATATA
1 AAAAATATA
70524204 AA
1 AA
70524206 TTATATAAAC
Statistics
Matches: 68, Mismatches: 16, Indels: 13
0.70 0.16 0.13
Matches are distributed among these distances:
8 18 0.26
9 38 0.56
10 11 0.16
11 1 0.01
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (9 bp):
AAAAATATA
Found at i:70524138 original size:18 final size:18
Alignment explanation
Indices: 70524106--70524205 Score: 64
Period size: 18 Copynumber: 5.6 Consensus size: 18
70524096 TATATCGTAC
* *
70524106 AAAAATATTTAAAAATTTT
1 AAAAATA-TAAAAAATTAT
*
70524125 AAAAATATAAAAAA-TACA
1 AAAAATATAAAAAATTA-T
*
70524143 AAAAATGTAAAAAAATTAT
1 AAAAATAT-AAAAAATTAT
* * *
70524162 AAAATTATTAAAAATGA-
1 AAAAATATAAAAAATTAT
* *
70524179 AAAAATAT-TAAAA-TAC
1 AAAAATATAAAAAATTAT
70524195 AAAAATATAAA
1 AAAAATATAAA
70524206 TTATATAAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
15 1 0.02
16 12 0.19
17 9 0.14
18 20 0.32
19 19 0.30
20 2 0.03
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (18 bp):
AAAAATATAAAAAATTAT
Found at i:70524147 original size:37 final size:36
Alignment explanation
Indices: 70524106--70524205 Score: 98
Period size: 37 Copynumber: 2.8 Consensus size: 36
70524096 TATATCGTAC
*
70524106 AAAAATATTTAAAAATTTTAAAAATATAAAAAATACA
1 AAAAATATTTAAAAATTATAAAAATATAAAAAAT-CA
* ** * * *
70524143 AAAAATGTAAAAAAATTATAAAATTATTAAAAATGA
1 AAAAATATTTAAAAATTATAAAAATATAAAAAATCA
*
70524179 AAAAATA-TT-AAAA-TACAAAAATATAAA
1 AAAAATATTTAAAAATTATAAAAATATAAA
70524206 TTATATAAAC
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
33 11 0.22
34 4 0.08
36 7 0.14
37 28 0.56
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (36 bp):
AAAAATATTTAAAAATTATAAAAATATAAAAAATCA
Found at i:70524214 original size:24 final size:24
Alignment explanation
Indices: 70524153--70524233 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
70524143 AAAAATGTAA
* *
70524153 AAAAATTATA-AAATTATTAAAAAT
1 AAAAATTATATAAAATA-CAAAAAT
*
70524177 GAAAAAATAT-TAAAATACAAAAAT
1 -AAAAATTATATAAAATACAAAAAT
* * *
70524201 ATAAATTATATAAACTATAAAAAT
1 AAAAATTATATAAAATACAAAAAT
70524225 AAAAATTAT
1 AAAAATTAT
70524234 GAAATAATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
23 7 0.15
24 26 0.57
25 13 0.28
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (24 bp):
AAAAATTATATAAAATACAAAAAT
Found at i:70524323 original size:19 final size:20
Alignment explanation
Indices: 70524283--70524325 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
70524273 AACAAAATAT
*
70524283 TATAAAAAAAGCATAAAGAA
1 TATAAAAAAAACATAAAGAA
*
70524303 TATAAAAAAAACTTAAA-AA
1 TATAAAAAAAACATAAAGAA
70524322 TATA
1 TATA
70524326 TGAAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.21
Consensus pattern (20 bp):
TATAAAAAAAACATAAAGAA
Found at i:70524331 original size:20 final size:21
Alignment explanation
Indices: 70524276--70524342 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
70524266 ATAAATTAAC
70524276 AAAATATTATAAAAAAAGCATA
1 AAAATA-TATAAAAAAAGCATA
*
70524298 AAGAATATA-AAAAAAA-CTTA
1 AA-AATATATAAAAAAAGCATA
* **
70524318 AAAATATATGAAAAAATTATA
1 AAAATATATAAAAAAAGCATA
70524339 AAAA
1 AAAA
70524343 AATCTATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 6 0.16
20 11 0.29
21 13 0.34
22 4 0.11
23 4 0.11
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAATATATAAAAAAAGCATA
Found at i:70524876 original size:19 final size:19
Alignment explanation
Indices: 70524834--70524876 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
70524824 AATTTAGCAC
* *
70524834 TTTTTTATATTTTTCATAA
1 TTTTTTAAATTTTTAATAA
*
70524853 ATTTTTAAATTTTTAAT-A
1 TTTTTTAAATTTTTAATAA
70524871 TTTTTT
1 TTTTTT
70524877 GTGATTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTTAAATTTTTAATAA
Found at i:70525606 original size:16 final size:16
Alignment explanation
Indices: 70525585--70525652 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
70525575 TTTGGTTCGC
70525585 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
70525601 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
70525617 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
70525633 TGTATTGGATTAGATG
1 TGTATTGGATTAGAGG
70525649 TGTA
1 TGTA
70525653 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:70525905 original size:16 final size:16
Alignment explanation
Indices: 70525881--70525921 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
70525871 AACATAATTA
70525881 TTATT-AAATA-TATT
1 TTATTAAAATATTATT
70525895 TTAATTAAAATATTATT
1 TT-ATTAAAATATTATT
70525912 TTATTAAAAT
1 TTATTAAAAT
70525922 TCTTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 2 0.08
15 3 0.12
16 13 0.54
17 6 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TTATTAAAATATTATT
Found at i:70525913 original size:17 final size:15
Alignment explanation
Indices: 70525868--70525921 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
70525858 TTAATCATAT
70525868 TTAAACATA-ATTATTA
1 TTAAA-ATATATT-TTA
70525884 TT-AAATATATTTTAA
1 TTAAAATATATTTT-A
70525899 TTAAAATATTATTTTA
1 TTAAAATA-TATTTTA
70525915 TTAAAAT
1 TTAAAAT
70525922 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 8 0.24
16 15 0.44
17 6 0.18
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAAATATATTTTA
Found at i:70526083 original size:120 final size:120
Alignment explanation
Indices: 70525871--70526369 Score: 943
Period size: 120 Copynumber: 4.2 Consensus size: 120
70525861 ATCATATTTA
* * *
70525871 AACATAATTATTATTAAATATATTTTAATTAAAATAT-TATTTTATTAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
70525935 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
70525990 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
70526055 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
70526110 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
70526175 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
70526230 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
70526295 TATTCTTATATTAATTTACTC-AATCATAATATATGATACTGT-AAA-ATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
70526347 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
70526370 AACTTGAAAA
Statistics
Matches: 376, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
117 30 0.08
118 3 0.01
119 57 0.15
120 286 0.76
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:70536911 original size:39 final size:39
Alignment explanation
Indices: 70536842--70536933 Score: 112
Period size: 39 Copynumber: 2.4 Consensus size: 39
70536832 ACCACAATGT
* * * *
70536842 TATTGAGTGGCTTAACCATAACGAGAAACTTGTCTGCAA
1 TATTCAGTGGCTTGACCACAACGAGAAACTTGACTGCAA
* * *
70536881 TATTTAGTGGCTTGACCACAACGTGCAACTTGACTGCAA
1 TATTCAGTGGCTTGACCACAACGAGAAACTTGACTGCAA
*
70536920 TATACAGTGGCTTG
1 TATTCAGTGGCTTG
70536934 GCCATAATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (39 bp):
TATTCAGTGGCTTGACCACAACGAGAAACTTGACTGCAA
Found at i:70540383 original size:125 final size:125
Alignment explanation
Indices: 70540161--70540407 Score: 390
Period size: 125 Copynumber: 2.0 Consensus size: 125
70540151 GGGGGAGAGT
* * * *
70540161 TATAATAGCTCGAATTTCAGCAATGTCGAAAATAGTGGTTCAAGACCATCAAATTCGACAAATGA
1 TATAATAGCCCGAATTTCAACAATGTCGAAAATAGTAGTTCAAGACCATCAAATTCGAAAAATGA
70540226 ACTCGTAGATTATATTATTTAATATTTACGAGCCAAATGTAGTTTTTAAAAGATTTTGAA
66 ACTCGTAGATTATATTATTTAATATTTACGAGCCAAATGTAGTTTTTAAAAGATTTTGAA
* * *
70540286 TATAATAGCCCGAATTTTAACGATGTC-AGAAATAGTAGTTCGAGACCATCAAA-TCTGAAAAAT
1 TATAATAGCCCGAATTTCAACAATGTCGA-AAATAGTAGTTCAAGACCATCAAATTC-GAAAAAT
*
70540349 GAACTTGTAGATTATATTATTTAATATTTACGAGCCAAATGTAGTTTTTAAAAGATTTT
64 GAACTCGTAGATTATATTATTTAATATTTACGAGCCAAATGTAGTTTTTAAAAGATTTT
70540408 TGAAATAGTA
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
124 3 0.03
125 109 0.97
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (125 bp):
TATAATAGCCCGAATTTCAACAATGTCGAAAATAGTAGTTCAAGACCATCAAATTCGAAAAATGA
ACTCGTAGATTATATTATTTAATATTTACGAGCCAAATGTAGTTTTTAAAAGATTTTGAA
Found at i:70542358 original size:50 final size:50
Alignment explanation
Indices: 70542283--70542448 Score: 269
Period size: 50 Copynumber: 3.3 Consensus size: 50
70542273 GGCAACCAGA
*
70542283 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGAAAGT
1 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAGT
* *
70542333 GATAAGTAATAGCTTCGGCTACACTTATTTGATCAAGGACAAGTGAAAGT
1 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAGT
*
70542383 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGACAAGT
1 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA-AAGT
* *
70542434 GAAAAGTGGTAGCTT
1 GATAAGTGATAGCTT
70542449 TGGTTACCTG
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 90 0.84
51 17 0.16
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.27
Consensus pattern (50 bp):
GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAGT
Found at i:70542469 original size:31 final size:31
Alignment explanation
Indices: 70542431--70542548 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
70542421 ACAAATGACA
* *
70542431 AGTGAAAAGTGGTAGCTTTGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
70542462 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
70542493 AGTGAAAAGTAGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70542524 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
70542549 AAGTGACAAG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 78 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:70542637 original size:47 final size:46
Alignment explanation
Indices: 70542568--70542736 Score: 167
Period size: 47 Copynumber: 3.6 Consensus size: 46
70542558 GTGATTTCCA
* * * * *
70542568 TATAAGACCAAATCTAGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATAC-G
* * * *
70542615 TATAAGACCATATCTGGGATATGGCATCAGTGCGATATGTGATTCG
1 TATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACG
* * * *
70542661 TGTAAGACCATAGCTGGGCTATGGTATCGATATGTGATATGTGATTACG
1 TATAAGACCATAGCTGGGATATGGCATCG--GTGTGATATGTGA-TACG
* *
70542710 TGTAAGACCATAGCTGGGCTATGGCAT
1 TATAAGACCATAGCTGGGATATGGCAT
70542737 GATTATGTGA
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
46 25 0.24
47 38 0.37
48 11 0.11
49 29 0.28
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
TATAAGACCATAGCTGGGATATGGCATCGGTGTGATATGTGATACG
Found at i:70542718 original size:49 final size:48
Alignment explanation
Indices: 70542617--70542746 Score: 176
Period size: 49 Copynumber: 2.7 Consensus size: 48
70542607 TGCTACTGTA
* * * *
70542617 TAAGACCATATCTGGGATATGGCATC-A-GTGCGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
*
70542663 TAAGACCATAGCTGGGCTATGGTATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATT-CGTG
70542712 TAAGACCATAGCTGGGCTATGGCAT-GATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
70542747 AGATGTGTAA
Statistics
Matches: 74, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
46 23 0.31
47 1 0.01
48 15 0.20
49 35 0.47
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTCGTG
Found at i:70544944 original size:27 final size:27
Alignment explanation
Indices: 70544906--70544959 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
70544896 GCCAACAAGT
*
70544906 GAGATTTTTATATACTCCAGTTATAAA
1 GAGATTTTTATATACACCAGTTATAAA
*
70544933 GAGATTTTTATATACACCGGTTATAAA
1 GAGATTTTTATATACACCAGTTATAAA
70544960 ATTATTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (27 bp):
GAGATTTTTATATACACCAGTTATAAA
Found at i:70554032 original size:38 final size:38
Alignment explanation
Indices: 70553981--70554065 Score: 118
Period size: 38 Copynumber: 2.2 Consensus size: 38
70553971 GTAAAAGAAG
* *
70553981 AAATCCGGACTTAAAGTCCGCAGGCTATA-TGCTGGAAT
1 AAATCCGGACTTAAAGTCCACAGGCTA-AGTGCTGGAAA
*
70554019 AAATCCGGACTTAAAGTCCATAGGCTAAGTGCTGGAAA
1 AAATCCGGACTTAAAGTCCACAGGCTAAGTGCTGGAAA
70554057 AATATCCGG
1 AA-ATCCGG
70554066 GTTAAGGACC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
37 1 0.02
38 35 0.83
39 6 0.14
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (38 bp):
AAATCCGGACTTAAAGTCCACAGGCTAAGTGCTGGAAA
Found at i:70561698 original size:48 final size:48
Alignment explanation
Indices: 70561624--70561801 Score: 243
Period size: 48 Copynumber: 3.7 Consensus size: 48
70561614 TGATATGTGT
*
70561624 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* *
70561672 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * * * *
70561720 GCTAGTGTAAGGCCATGTCTGGGACATGGCATCGG-TA-TTGATATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT--TATGAGA
*
70561768 GCTAGTGTGAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
70561802 AAAAATTTAC
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 114 0.98
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:70564674 original size:16 final size:16
Alignment explanation
Indices: 70564653--70564685 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
70564643 TGAATTGAAG
70564653 AAAGAAAACAAAAAAA
1 AAAGAAAACAAAAAAA
*
70564669 AAAGAAAAGAAAAAAA
1 AAAGAAAACAAAAAAA
70564685 A
1 A
70564686 GTGTTCATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAGAAAACAAAAAAA
Found at i:70565921 original size:40 final size:39
Alignment explanation
Indices: 70565837--70566100 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 39
70565827 TCGAATGATG
* * * *
70565837 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
70565877 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70565917 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
70565956 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
* * *
70565996 TCCGGGCTAAGCCCGAAGGAATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
70566035 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
70566076 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
70566101 AACGAGTAGC
Statistics
Matches: 190, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 67 0.35
40 113 0.59
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70565973 original size:79 final size:80
Alignment explanation
Indices: 70565837--70566098 Score: 363
Period size: 79 Copynumber: 3.3 Consensus size: 80
70565827 TCGAATGATG
* * * * * **
70565837 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
70565900 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAT
70565917 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
70565981 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
*
70565996 TCCGGGCTAAG-CCCGAAGGAATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*
70566060 GTGCGAGTTACT-AT
66 GTGCGAGATACTAAT
* *
70566074 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATT
70566099 TGAACGAGTA
Statistics
Matches: 166, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
78 3 0.02
79 135 0.81
80 28 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:70566051 original size:119 final size:121
Alignment explanation
Indices: 70565837--70566100 Score: 344
Period size: 119 Copynumber: 2.2 Consensus size: 121
70565827 TCGAATGATG
* * * *
70565837 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGAATT
* *
70565901 TGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AA
66 GGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
* *
70565956 TCCGGGTTAAGTCCCGAAGGCATTTGTGCG-AGAT-ACTAAT-TCCGGGCTAAG-CCCGAAGGAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TGAC-AATATCCGGACTAAGACCCGAAGGAA
* * *
70566017 TTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
64 TTGGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
*
70566076 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70566101 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
118 33 0.26
119 82 0.65
120 12 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGAATT
GGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
Found at i:70568228 original size:27 final size:27
Alignment explanation
Indices: 70568198--70568311 Score: 162
Period size: 27 Copynumber: 4.2 Consensus size: 27
70568188 GTGATGAAGT
70568198 CACCAGATACAGATAT-TGTGGCAGAGC
1 CACCAGAT-CAGATATATGTGGCAGAGC
70568225 CACCAGATCAGATATATGTGGCAGAGC
1 CACCAGATCAGATATATGTGGCAGAGC
*
70568252 CACCAGGA-CAAATATATGTGGCAGAGC
1 CACCA-GATCAGATATATGTGGCAGAGC
*
70568279 CACCAGATCAGATA-ATTGTGGCATAGC
1 CACCAGATCAGATATA-TGTGGCAGAGC
70568306 CACCAG
1 CACCAG
70568312 GACGCTTCCT
Statistics
Matches: 80, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
26 10 0.12
27 68 0.85
28 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATCAGATATATGTGGCAGAGC
Found at i:70569281 original size:33 final size:33
Alignment explanation
Indices: 70569244--70569309 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
70569234 CGTTTATTTC
70569244 ATTTGAAACTAGACTCATTAAGCTTTAATTACA
1 ATTTGAAACTAGACTCATTAAGCTTTAATTACA
70569277 ATTTGAAACTAGACTCATTAAGCTTTAATTACA
1 ATTTGAAACTAGACTCATTAAGCTTTAATTACA
70569310 TAATTTACTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.36
Consensus pattern (33 bp):
ATTTGAAACTAGACTCATTAAGCTTTAATTACA
Found at i:70569974 original size:26 final size:26
Alignment explanation
Indices: 70569944--70570025 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
70569934 TGAAGTTCCC
70569944 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70569970 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70569996 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70570022 ATCA
1 ATCA
70570026 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:70573930 original size:27 final size:27
Alignment explanation
Indices: 70573900--70574104 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
70573890 ATATTGAGTC
* * * *
70573900 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70573927 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70573954 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70573982 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70574009 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70574036 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70574063 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70574090 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70574105 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70593808 original size:39 final size:40
Alignment explanation
Indices: 70593742--70593915 Score: 196
Period size: 39 Copynumber: 4.5 Consensus size: 40
70593732 ACCCAAGTAT
** *
70593742 CTTCGGGAATTAG-CCGGATATAACAACTCG-ACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
70593780 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC-AATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
70593819 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
70593859 CTTCAGGACATAGCCCGGATATAGCAACTCGCACGAATG-
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
70593898 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
70593916 TTATCATCCG
Statistics
Matches: 113, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 11 0.10
39 64 0.57
40 38 0.34
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:70601810 original size:40 final size:40
Alignment explanation
Indices: 70601743--70601918 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
70601733 ACCCAAGTAT
*
70601743 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
70601782 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
70601822 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
70601862 CTTC-GGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
70601901 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
70601919 TTATCATCCG
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 3 0.03
39 41 0.35
40 72 0.61
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:70601879 original size:79 final size:79
Alignment explanation
Indices: 70601743--70601918 Score: 241
Period size: 79 Copynumber: 2.2 Consensus size: 79
70601733 ACCCAAGTAT
* * *
70601743 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGC
70601807 AACTCGCACAAATGC
65 AACTCGCACAAATGC
*
70601822 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTC-GGACATAGCCCGGATATAG
1 CTTCGGGTCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAG
*
70601885 CAACTCGCACGAATGC
64 CAACTCGCACAAATGC
*
70601901 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
70601919 TTATCATCCG
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
78 1 0.01
79 59 0.68
80 26 0.30
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:70604019 original size:26 final size:25
Alignment explanation
Indices: 70603963--70604023 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 25
70603953 CATAATTTTC
70603963 TCAAAATTTTATCGGGGTAAAATCG
1 TCAAAATTTTATCGGGGTAAAATCG
* *
70603988 TAAAAATTTTATCGGCGGTGAAATCG
1 TCAAAATTTTATCGG-GGTAAAATCG
70604014 TCAAAATTTT
1 TCAAAATTTT
70604024 CATGGAGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 14 0.44
26 18 0.56
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (25 bp):
TCAAAATTTTATCGGGGTAAAATCG
Found at i:70604499 original size:30 final size:30
Alignment explanation
Indices: 70604417--70604576 Score: 214
Period size: 30 Copynumber: 5.3 Consensus size: 30
70604407 TTTTCAAGGG
*
70604417 TCACAC-ACCCGTGTGAACAGGCCATGTGCC
1 TCACACGA-CCGTGTGAACAGGCCGTGTGCC
** * * *
70604447 TCACATTACCATGTCAATAGGCCGTGTGCC
1 TCACACGACCGTGTGAACAGGCCGTGTGCC
* *
70604477 TTACACGATCGTGTGAACAGGCCGTGTGCC
1 TCACACGACCGTGTGAACAGGCCGTGTGCC
*
70604507 TCACACGACCGTGTGAACAAGCCGTGTGCC
1 TCACACGACCGTGTGAACAGGCCGTGTGCC
*
70604537 TCACACGACCGTGTGAACAAGCCGTGTGCC
1 TCACACGACCGTGTGAACAGGCCGTGTGCC
70604567 TCACACGACC
1 TCACACGACC
70604577 ACTAGACACG
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
30 113 0.99
31 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.19
Consensus pattern (30 bp):
TCACACGACCGTGTGAACAGGCCGTGTGCC
Found at i:70604520 original size:17 final size:17
Alignment explanation
Indices: 70604498--70604576 Score: 66
Period size: 17 Copynumber: 5.1 Consensus size: 17
70604488 TGTGAACAGG
70604498 CCGTGTGCCTCACACGA
1 CCGTGTGCCTCACACGA
* *
70604515 CCGTGTG---AACAAG-
1 CCGTGTGCCTCACACGA
70604528 CCGTGTGCCTCACACGA
1 CCGTGTGCCTCACACGA
* *
70604545 CCGTGTG---AACAAG-
1 CCGTGTGCCTCACACGA
70604558 CCGTGTGCCTCACACGA
1 CCGTGTGCCTCACACGA
70604575 CC
1 CC
70604577 ACTAGACACG
Statistics
Matches: 46, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
13 14 0.30
14 8 0.17
16 8 0.17
17 16 0.35
ACGTcount: A:0.22, C:0.37, G:0.25, T:0.16
Consensus pattern (17 bp):
CCGTGTGCCTCACACGA
Found at i:70605861 original size:47 final size:47
Alignment explanation
Indices: 70605741--70605861 Score: 127
Period size: 47 Copynumber: 2.6 Consensus size: 47
70605731 AATCGATAAG
* * *
70605741 TACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCCCGAAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAAAA
** * * **
70605788 TACCTATACCATGGCCTATAGTCAAATCAAGGTAA-TTCCTTTCAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTT-ATCCCAAAA
* *
70605835 TTCCTATATCATGGCCCGTAGCCAAAT
1 TACCTATACCATGGCCCGTAGCCAAAT
70605862 AAAGATATTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
46 2 0.03
47 57 0.97
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAAAA
Found at i:70610372 original size:24 final size:24
Alignment explanation
Indices: 70610345--70610396 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
70610335 CATTATCACT
* **
70610345 ATCATCATAGTTTGCACTATTACA
1 ATCATCATAGCTCACACTATTACA
*
70610369 ATCATCATAGCTCACATTATTACA
1 ATCATCATAGCTCACACTATTACA
70610393 ATCA
1 ATCA
70610397 AATTCTTCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.35
Consensus pattern (24 bp):
ATCATCATAGCTCACACTATTACA
Found at i:70612569 original size:76 final size:76
Alignment explanation
Indices: 70612477--70612623 Score: 258
Period size: 76 Copynumber: 1.9 Consensus size: 76
70612467 CAAGCATTTT
*
70612477 TTGTGCATTGCATACGGCTTTACAATAGAATTCTATTTTTTGTTTCACTAAAAAAAGAAAAAGAG
1 TTGTGCATTGCATACGGCTTTACAATAGAATTCTATTTTTTCTTTCACTAAAAAAAGAAAAAGAG
70612542 AAAATAAATGC
66 AAAATAAATGC
* * *
70612553 TTGTGCATTGCATACGGCTTTACAATGGAATTCTATTTTTTCTTTCACTGAAAAAAGAAAAAGTG
1 TTGTGCATTGCATACGGCTTTACAATAGAATTCTATTTTTTCTTTCACTAAAAAAAGAAAAAGAG
70612618 AAAATA
66 AAAATA
70612624 TAAAGAGCAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (76 bp):
TTGTGCATTGCATACGGCTTTACAATAGAATTCTATTTTTTCTTTCACTAAAAAAAGAAAAAGAG
AAAATAAATGC
Found at i:70612853 original size:12 final size:12
Alignment explanation
Indices: 70612836--70612860 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70612826 ATTTTATAAC
70612836 ATAAATATTGTT
1 ATAAATATTGTT
70612848 ATAAATATTGTT
1 ATAAATATTGTT
70612860 A
1 A
70612861 ATAGCCTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:70614612 original size:20 final size:20
Alignment explanation
Indices: 70614576--70614617 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
70614566 TAATGAATGT
70614576 AAAAAAATATATAATATCAAA
1 AAAAAAATATATAATAT-AAA
70614597 AAAAAAAT-TA-ACATATAAA
1 AAAAAAATATATA-ATATAAA
70614616 AA
1 AA
70614618 TAACAATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 6 0.30
20 6 0.30
21 8 0.40
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAAATATATAATATAAA
Found at i:70614915 original size:44 final size:46
Alignment explanation
Indices: 70614848--70614936 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
70614838 AATTGTAATG
70614848 GAATAGAGCTATAATCAGTAATTCAAT-TGTTTGATTGAATGGAATT
1 GAATAGAGCTATAATCAGTAATTC-ATGTGTTTGATTGAATGGAATT
* *
70614894 GAATAGAGCTGTAAT-AG-AATTCATGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTATAATCAGTAATTCATGTGTTTGATTGAATGGAAT
70614937 AAATGTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 2 0.05
44 22 0.55
45 2 0.05
46 14 0.35
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (46 bp):
GAATAGAGCTATAATCAGTAATTCATGTGTTTGATTGAATGGAATT
Found at i:70615177 original size:13 final size:12
Alignment explanation
Indices: 70615123--70615185 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
70615113 TTTAATAAAA
70615123 TAATATATAA-TT
1 TAATA-ATAATTT
*
70615135 TAAT-ATCATTCT
1 TAATAATAATT-T
70615147 TAAT-ATAATTAT
1 TAATAATAATT-T
70615159 TAATAAT-A-TT
1 TAATAATAATTT
70615169 TAATAATAATTT
1 TAATAATAATTT
70615181 TAATA
1 TAATA
70615186 TAAAATTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
10 11 0.26
11 3 0.07
12 27 0.63
13 2 0.05
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATAATAATTT
Found at i:70615499 original size:20 final size:20
Alignment explanation
Indices: 70615454--70615499 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
70615444 CTTTTGGTGA
*
70615454 AATAAAAATCTTCAAATTTT
1 AATAAAAATCTACAAATTTT
70615474 ACATAAAAAT-TACTAAATTTT
1 A-ATAAAAATCTAC-AAATTTT
70615495 AATAA
1 AATAA
70615500 CATTAGTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (20 bp):
AATAAAAATCTACAAATTTT
Found at i:70623242 original size:13 final size:13
Alignment explanation
Indices: 70623226--70623257 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
70623216 TTTTCAAAAT
70623226 CACTTTTTTCCAA
1 CACTTTTTTCCAA
70623239 CACTTTTTTCCAA
1 CACTTTTTTCCAA
70623252 CACTTT
1 CACTTT
70623258 CTCAAAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (13 bp):
CACTTTTTTCCAA
Found at i:70625618 original size:40 final size:40
Alignment explanation
Indices: 70625555--70625734 Score: 183
Period size: 40 Copynumber: 4.5 Consensus size: 40
70625545 TATTTGAATG
*
70625555 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
70625595 ATATCCGGACTAAGATCCAAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
70625635 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACG
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * **
70625675 ATATCCGGGCTAAG-TCCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
70625714 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
70625735 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 14 0.12
39 16 0.14
40 85 0.72
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:70625688 original size:80 final size:79
Alignment explanation
Indices: 70625555--70625734 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 79
70625545 TATTTGAATG
* * *
70625555 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGACTAAGAT-CCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACGATATCCGGACTAAG-TCCCAAAGGC
* *
70625619 ATTTGTGCAAGTTGCT
65 -CTTGTGCAAGTGGCT
* * *
70625635 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACGATATCCGGGCTAAGTCCCGAAGGCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACGATATCCGGACTAAGTCCCAAAGGCC
* *
70625700 TTGTGCGAGTGGTT
66 TTGTGCAAGTGGCT
70625714 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
70625735 ATACTTGGGT
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
77 1 0.01
78 13 0.15
79 18 0.20
80 56 0.64
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACGATATCCGGACTAAGTCCCAAAGGCC
TTGTGCAAGTGGCT
Found at i:70627654 original size:41 final size:41
Alignment explanation
Indices: 70627597--70627809 Score: 184
Period size: 41 Copynumber: 5.2 Consensus size: 41
70627587 ATACAAAAAC
* * *
70627597 TATATCAGACTTTATGCCTAGTAGGCTTCATGCTGATGTAT
1 TATATCAGGCTTTATGCCTAGCAGGCTTCGTGCTGATGTAT
* * * *
70627638 TATATTAGGCTTTATGCCTAGTAGGCTTCTTGC-CAGTGTAT
1 TATATCAGGCTTTATGCCTAGCAGGCTTCGTGCTGA-TGTAT
* ** * * *
70627679 TATATCAAGCTTTGCGCCTAACAGGTTTCGTGCCGATGTAT
1 TATATCAGGCTTTATGCCTAGCAGGCTTCGTGCTGATGTAT
* *
70627720 TATATCAGGCTTTGTGCCTAGCAGGCTTCGTG-TCGATGTGT
1 TATATCAGGCTTTATGCCTAGCAGGCTTCGTGCT-GATGTAT
* * *
70627761 TATATCAGGTTTTGA-GTCTAGCA-GCTTCGTGC-CAGTGTAT
1 TATATCAGGCTTT-ATGCCTAGCAGGCTTCGTGCTGA-TGTAT
*
70627801 TGTATCAGG
1 TATATCAGG
70627810 TAAGTTGTAC
Statistics
Matches: 141, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 21 0.15
41 118 0.84
42 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (41 bp):
TATATCAGGCTTTATGCCTAGCAGGCTTCGTGCTGATGTAT
Found at i:70630512 original size:46 final size:46
Alignment explanation
Indices: 70630462--70630551 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
70630452 TAGACAAAAA
*
70630462 GAAAGAAAGTGTAAGTGAATCAAAACTTCAACGAAGCGTTGATATT
1 GAAAGAAAGTGTAAGTAAATCAAAACTTCAACGAAGCGTTGATATT
70630508 GAAAGAAAGTGTAAGTAAATCAAAACTTCAACGAAGCGTTGATA
1 GAAAGAAAGTGTAAGTAAATCAAAACTTCAACGAAGCGTTGATA
70630552 CCAAAAATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.22
Consensus pattern (46 bp):
GAAAGAAAGTGTAAGTAAATCAAAACTTCAACGAAGCGTTGATATT
Found at i:70637289 original size:55 final size:55
Alignment explanation
Indices: 70637151--70637289 Score: 145
Period size: 55 Copynumber: 2.5 Consensus size: 55
70637141 CGTGCGACAT
* ** * **
70637151 AACCGTGGGTGAACCTGCCAAAACAACACGGGCATGCGCCATGCCCATGCCTTGA
1 AACCGTGGGCGAACCTGCCAAAACAACACGGGCATGCAACACGCCCATGCCAAGA
* * ** * * *
70637206 AACTGT-GGCTGAACCTGTCAAATTAACACGGGCGTGCAACACGCCCGTGCCAAGC
1 AACCGTGGGC-GAACCTGCCAAAACAACACGGGCATGCAACACGCCCATGCCAAGA
70637261 AACCGTGGGCGAACCTGCCAAAACAACAC
1 AACCGTGGGCGAACCTGCCAAAACAACAC
70637290 AAGCGTGGAC
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
54 2 0.03
55 60 0.92
56 3 0.05
ACGTcount: A:0.29, C:0.32, G:0.24, T:0.14
Consensus pattern (55 bp):
AACCGTGGGCGAACCTGCCAAAACAACACGGGCATGCAACACGCCCATGCCAAGA
Found at i:70641414 original size:13 final size:13
Alignment explanation
Indices: 70641396--70641422 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70641386 GACGTAATCG
70641396 CACACGGGCGTGT
1 CACACGGGCGTGT
70641409 CACACGGGCGTGT
1 CACACGGGCGTGT
70641422 C
1 C
70641423 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:70643396 original size:47 final size:47
Alignment explanation
Indices: 70643318--70643769 Score: 778
Period size: 47 Copynumber: 9.6 Consensus size: 47
70643308 CCCTTCGGGA
* * * * * *
70643318 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70643365 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70643412 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70643459 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70643506 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70643553 CTTATCACATATATCCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70643600 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70643647 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70643694 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70643743 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
70643770 TATTCAAATA
Statistics
Matches: 385, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 338 0.88
49 47 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70645162 original size:85 final size:85
Alignment explanation
Indices: 70645033--70645211 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
70645023 TATTTTATTG
*
70645033 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
70645098 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
70645118 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
70645183 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
70645203 CCCATGCTC
1 CCCATGCTC
70645212 ATGGCCAGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:70646737 original size:57 final size:58
Alignment explanation
Indices: 70646661--70646769 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
70646651 GCCCACTGTT
* *
70646661 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * * *
70646718 CGATTTCGTACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
70646770 TAATCATTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:70647013 original size:40 final size:40
Alignment explanation
Indices: 70646981--70647252 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
70646971 CCAGCATGAT
* * * * *
70646981 TGCTCTTCCGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
70647021 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
70647061 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
70647101 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
70647141 TGCTCCTCGAGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
70647181 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
70647221 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
70647253 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:70648744 original size:47 final size:47
Alignment explanation
Indices: 70648666--70649119 Score: 755
Period size: 47 Copynumber: 9.6 Consensus size: 47
70648656 CCCTTCGGGA
* * * * * *
70648666 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70648713 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70648760 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70648807 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70648854 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70648901 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70648948 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70648997 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70649044 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70649093 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
70649120 TATTCAAATA
Statistics
Matches: 383, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 292 0.76
49 91 0.24
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70650511 original size:85 final size:85
Alignment explanation
Indices: 70650382--70650560 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
70650372 TATTTTATTG
*
70650382 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
70650447 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
70650467 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
70650532 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
70650552 CCCATGCTC
1 CCCATGCTC
70650561 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:70656495 original size:16 final size:16
Alignment explanation
Indices: 70656476--70656536 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
70656466 TTTTAATAAG
70656476 ATTTAATATTAAATTA
1 ATTTAATATTAAATTA
* **
70656492 ATTTGATATTTATCTTA
1 ATTTAATA-TTAAATTA
* *
70656509 A-TAAATATTATATTA
1 ATTTAATATTAAATTA
*
70656524 GTTTAATATTAAA
1 ATTTAATATTAAA
70656537 GTGATTAAGT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
15 7 0.21
16 20 0.59
17 7 0.21
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTAATATTAAATTA
Found at i:70659132 original size:22 final size:21
Alignment explanation
Indices: 70659106--70659148 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
70659096 GGGTAGAATT
*
70659106 GTAAATTAATAATAAAACTAAA
1 GTAAATTAATAAGAAAA-TAAA
70659128 GTAAATTAATAAGAAAATAAA
1 GTAAATTAATAAGAAAATAAA
70659149 CATTTTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
GTAAATTAATAAGAAAATAAA
Found at i:70660161 original size:20 final size:20
Alignment explanation
Indices: 70660136--70660175 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
70660126 GCTTGTACGG
*
70660136 GTTTGCACTTTGGTGCCTCT
1 GTTTGCACTTCGGTGCCTCT
70660156 GTTTGCACTTCGGTGCCTCT
1 GTTTGCACTTCGGTGCCTCT
70660176 CATCACACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.28, G:0.25, T:0.42
Consensus pattern (20 bp):
GTTTGCACTTCGGTGCCTCT
Found at i:70672987 original size:69 final size:69
Alignment explanation
Indices: 70672798--70672989 Score: 251
Period size: 70 Copynumber: 2.8 Consensus size: 69
70672788 TCATCAAAAA
* * * * *
70672798 CCCAAATGGTTAACGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTTGCAGGTTCAATACCA
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTTTCATTCTAAGGCTCGCAAGTTCAATACCA
70672863 CAAC
66 CAAC
* * *
70672867 CCTCAAACAGTTAGCAAGAGTTAAAAGCTCCCAACTATT-ATTCTAATGCTCGCAAGTTCAATAC
1 CC-CAAATAGTTAGCGAGAGTTAAAAGCTCCCAACT-TTCATTCTAAGGCTCGCAAGTTCAATAC
* *
70672931 CGCAGC
64 CACAAC
* *
70672937 CCCAAATAGTTAGCGATAGTTAAAAGCTCCCAACTTTCATTTTAAGGCTCGCA
1 CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTTTCATTCTAAGGCTCGCA
70672990 GGTTTAACAT
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
68 2 0.02
69 45 0.43
70 57 0.54
71 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (69 bp):
CCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTTTCATTCTAAGGCTCGCAAGTTCAATACCA
CAAC
Found at i:70679584 original size:23 final size:22
Alignment explanation
Indices: 70679549--70679615 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 22
70679539 AGTATTATTA
* *
70679549 AAAATATATATATTTAAAATTT
1 AAAATAAAAATATTTAAAATTT
*
70679571 AAGAATAAAAATA-TTACAATATT
1 AA-AATAAAAATATTTAAAAT-TT
* * *
70679594 AATATAAAAACATTTAATATTT
1 AAAATAAAAATATTTAAAATTT
70679616 TTTTAACCAC
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
22 18 0.51
23 17 0.49
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (22 bp):
AAAATAAAAATATTTAAAATTT
Found at i:70684089 original size:37 final size:37
Alignment explanation
Indices: 70684039--70684117 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70684029 TTATTACGAA
* * *
70684039 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70684076 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70684113 GTCTT
1 GTCTT
70684118 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70684313 original size:47 final size:47
Alignment explanation
Indices: 70684235--70684695 Score: 764
Period size: 47 Copynumber: 9.7 Consensus size: 47
70684225 CCCTTCGGGA
* * * * * *
70684235 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70684282 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70684329 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70684376 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70684423 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70684472 CTTATCACATATATACACTTTCACATTCATCACATCGGCC-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70684518 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70684567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70684614 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70684661 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
70684696 AGAATCCTAA
Statistics
Matches: 395, Mismatches: 13, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 15 0.04
47 287 0.73
48 32 0.08
49 61 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70684652 original size:238 final size:237
Alignment explanation
Indices: 70684235--70684674 Score: 774
Period size: 238 Copynumber: 1.9 Consensus size: 237
70684225 CCCTTCGGGA
* * * * *
70684235 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
70684300 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
70684365 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
70684430 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70684472 CTTATCACATATATACACTTTCACATTCATCACATCGGCC-TTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
70684536 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
70684601 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
70684666 CTCATATAT
194 CACATATAT
70684675 GCATGTTCAC
Statistics
Matches: 192, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
236 10 0.05
237 36 0.19
238 146 0.76
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70687782 original size:93 final size:93
Alignment explanation
Indices: 70687670--70687841 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
70687660 CGCCCATAAG
* * *
70687670 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTT
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTC
70687734 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
70687763 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
70687828 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70687842 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70687836 original size:46 final size:46
Alignment explanation
Indices: 70687663--70687838 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
70687653 TGTAACCCGC
* *
70687663 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
70687709 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70687759 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70687802 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70687839 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 59 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70687857 original size:46 final size:44
Alignment explanation
Indices: 70687671--70687857 Score: 130
Period size: 46 Copynumber: 4.0 Consensus size: 44
70687661 GCCCATAAGC
* * * * *
70687671 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCTAGT
* *
70687717 GAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
70687764 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
70687810 GAACTCGAACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
70687856 GA
1 GA
70687858 CATGTCACTT
Statistics
Matches: 111, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 3 0.03
46 59 0.53
47 30 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:70688891 original size:30 final size:30
Alignment explanation
Indices: 70688855--70689029 Score: 280
Period size: 30 Copynumber: 5.8 Consensus size: 30
70688845 ACTTTTCTCA
70688855 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
70688885 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
70688915 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
70688945 ACTAGCCA-TACCTTTTTCACCACCAACTCC
1 ACTAGCCACT-CCTTTTCCACCACCAACTCC
*
70688975 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
70689005 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
70689030 CTTGTACCTA
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
29 1 0.01
30 131 0.98
31 1 0.01
ACGTcount: A:0.25, C:0.48, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:70688920 original size:60 final size:60
Alignment explanation
Indices: 70688855--70689029 Score: 314
Period size: 60 Copynumber: 2.9 Consensus size: 60
70688845 ACTTTTCTCA
*
70688855 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
* *
70688915 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCATACCTTTTTCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
*
70688975 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
70689030 CTTGTACCTA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 109 1.00
ACGTcount: A:0.25, C:0.48, G:0.03, T:0.23
Consensus pattern (60 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:70689146 original size:27 final size:26
Alignment explanation
Indices: 70689111--70689161 Score: 93
Period size: 27 Copynumber: 1.9 Consensus size: 26
70689101 TTTGTATCCA
70689111 GGGGGGATTTTTTTGGAGAGTTTTAG
1 GGGGGGATTTTTTTGGAGAGTTTTAG
70689137 GGGGGAGATTTTTTTGGAGAGTTTT
1 GGGGG-GATTTTTTTGGAGAGTTTT
70689162 TGGGAGAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.16, C:0.00, G:0.41, T:0.43
Consensus pattern (26 bp):
GGGGGGATTTTTTTGGAGAGTTTTAG
Found at i:70689575 original size:23 final size:23
Alignment explanation
Indices: 70689535--70689663 Score: 70
Period size: 25 Copynumber: 5.5 Consensus size: 23
70689525 TTTTTTTTGT
70689535 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATATTA
* *
70689558 TATTA-TATA-TTCTT-TTAATA
1 TATTATTATATTTCTTAATATTA
* * *
70689578 TATTAGGTATATTT-TAAATTTTA
1 TATTA-TTATATTTCTTAATATTA
* *
70689601 TATTACGTATATATATAT-TTTATACTA
1 TATTA--T-TATAT-T-TCTTAATATTA
* *
70689628 TTTTATTTATATATCTTTAATATTA
1 TATTA-TTATATTTC-TTAATATTA
70689653 TATTATTATAT
1 TATTATTATAT
70689664 ATATTTTTTT
Statistics
Matches: 79, Mismatches: 17, Indels: 19
0.69 0.15 0.17
Matches are distributed among these distances:
20 9 0.11
21 5 0.06
22 9 0.11
23 16 0.20
24 7 0.09
25 21 0.27
26 2 0.03
27 10 0.13
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATATTTCTTAATATTA
Found at i:70689579 original size:20 final size:20
Alignment explanation
Indices: 70689538--70689582 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
70689528 TTTTTGTTAT
*
70689538 TATTATATTTCTTAATATTA
1 TATTATATTTCTTAATAATA
*
70689558 TATTATATATTCTT-TTAATA
1 TATTATAT-TTCTTAATAATA
70689578 TATTA
1 TATTA
70689583 GGTATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTATATTTCTTAATAATA
Found at i:70689638 original size:25 final size:24
Alignment explanation
Indices: 70689610--70689670 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
70689600 ATATTACGTA
*
70689610 TATATATATTTTATACTATTTTAT
1 TATATATATTTTATACTATATTAT
*
70689634 T-TATATATCTTTAATATTATATTAT
1 TATATATAT-TTT-ATACTATATTAT
70689659 TATATATATTTT
1 TATATATATTTT
70689671 TTTTCTACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 7 0.22
24 4 0.12
25 14 0.44
26 7 0.22
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
TATATATATTTTATACTATATTAT
Found at i:70689735 original size:25 final size:25
Alignment explanation
Indices: 70689687--70689773 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 25
70689677 ACATGTTATC
*
70689687 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
70689709 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
70689734 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
70689757 TCATGTATTTATTTTTA
1 TTATGTATATATTTTTA
70689774 TATATGTACA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
22 10 0.19
23 19 0.35
24 2 0.04
25 23 0.43
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:70689769 original size:23 final size:24
Alignment explanation
Indices: 70689689--70689778 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
70689679 ATGTTATCTT
*
70689689 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
70689711 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
70689736 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
*
70689759 ATGTATTTATTTTT-ATATAT
1 ATGTATATATTTTTAATATAT
70689779 GTACATATTG
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
22 13 0.24
23 24 0.44
24 2 0.04
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.54
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:70689922 original size:16 final size:15
Alignment explanation
Indices: 70689898--70689945 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
70689888 TATTTATTAT
*
70689898 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
70689914 TATTTTAATATTTTA
1 TATTTTAATATTTTA
70689929 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
70689945 T
1 T
70689946 TATTCCCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:70689933 original size:7 final size:8
Alignment explanation
Indices: 70689898--70689949 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
70689888 TATTTATTAT
*
70689898 TATTCTAA
1 TATTTTAA
*
70689906 TATTTTGA
1 TATTTTAA
70689914 TATTTTAA
1 TATTTTAA
70689922 TATTTT-A
1 TATTTTAA
70689929 TATTTTATA
1 TATTTTA-A
*
70689938 TATTTTAT
1 TATTTTAA
70689946 TATT
1 TATT
70689950 CCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:70698323 original size:66 final size:62
Alignment explanation
Indices: 70698222--70698384 Score: 188
Period size: 66 Copynumber: 2.6 Consensus size: 62
70698212 CTTTTCAAGG
*
70698222 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCA-AGACACGTTGAGGTATTTTAATTTT
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAGAGAC-C--TGAGGTATTTTAA-GTT
70698285 TT
61 TT
* *
70698287 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGACCTGAGGTATTTTTAGTTTT
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAGACCTGAGGTATTTTAAGTTTT
** * *
70698350 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
70698385 TTTAATTTTT
Statistics
Matches: 88, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
61 31 0.35
63 4 0.05
64 12 0.14
66 36 0.41
67 5 0.06
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (62 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAGACCTGAGGTATTTTAAGTTTT
Found at i:70698376 original size:61 final size:64
Alignment explanation
Indices: 70698222--70698520 Score: 213
Period size: 68 Copynumber: 4.8 Consensus size: 64
70698212 CTTTTCAAGG
* *
70698222 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTAATTTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG-TGAGGTATTTTAATGTTTT
* * *
70698287 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGAC-C-TGAGGTATTTTTA-GTTT
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-AGACACGTGAGGTATTTTAATGTTT
70698349 T
64 T
** * *** *
70698350 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT-TTTA-A--T----T-TTTGT--T-TTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTGAGGTATTT-TAATGTTTT
* ** * *
70698402 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCT-GGGGCACGCTGAGGTATTTCAATTTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG-TGAGGTATTTTAA-----T
70698466 GTTTT
60 GTTTT
*
70698471 -AATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGTGAGGTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTGAGGTA
70698521 ATTTCAATTT
Statistics
Matches: 183, Mismatches: 27, Indels: 45
0.72 0.11 0.18
Matches are distributed among these distances:
52 3 0.02
53 34 0.19
54 3 0.02
57 1 0.01
58 1 0.01
59 1 0.01
61 32 0.17
62 3 0.02
63 4 0.02
64 12 0.07
66 37 0.20
67 10 0.05
68 39 0.21
69 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (64 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTGAGGTATTTTAATGTTTT
Found at i:70698505 original size:121 final size:114
Alignment explanation
Indices: 70698282--70698505 Score: 299
Period size: 114 Copynumber: 1.9 Consensus size: 114
70698272 GTATTTTAAT
70698282 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGACCTGAGGTATTTTTAGT
1 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGACCTGAGGTATTTTTAGT
*
70698347 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
66 TTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
* * *
70698396 TTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCT-GGGGCACGCTGAGGTATTTCAA
1 TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGG-AC-CTGAGG----T--A
* *
70698460 TTTTTTGTTTT-AATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
58 TTTTTAGTTTTAAATT-AACTCATATTGCGAGAGGTGAGTTAAGCCT
70698506 CAGACACGTG
Statistics
Matches: 95, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
113 3 0.03
114 42 0.44
115 6 0.06
119 1 0.01
120 4 0.04
121 39 0.41
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (114 bp):
TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGACCTGAGGTATTTTTAGT
TTTAAATTAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
Found at i:70698573 original size:72 final size:68
Alignment explanation
Indices: 70698402--70698607 Score: 216
Period size: 68 Copynumber: 2.9 Consensus size: 68
70698392 TTTGTTTTTC
* ** *
70698402 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTGGGGCACGCTGAGGT-ATTTCAATTTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACG-TGAGGTAATTTCAATTTTTT
**
70698466 GTTT
65 GTAA
* *
70698470 TAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTGAGGTAATTTCAATTTCTGT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTGAGGTAATTTCAATTT-T-T
70698535 TGTCAAA
64 TGT--AA
* * * *
70698542 AAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--ACACGT-GAGGTAATTTCAATTT
70698607 T
62 T
70698608 CGTTTTTCAA
Statistics
Matches: 115, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
67 6 0.05
68 48 0.42
69 1 0.01
70 4 0.03
72 33 0.29
73 1 0.01
75 7 0.06
76 15 0.13
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (68 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTGAGGTAATTTCAATTTTTTG
TAA
Found at i:70698692 original size:90 final size:89
Alignment explanation
Indices: 70698522--70698696 Score: 248
Period size: 92 Copynumber: 1.9 Consensus size: 89
70698512 CGTGAGGTAA
* *
70698522 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACA
*
70698587 CGTCGAGGTATTTTCAATTTTCGTT
65 CGTCGAGGTAATTTCAATTTTCGTT
*
70698612 TTTCAATTTCTGCCTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-A
1 TTTCAATTTCTG--TTGTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCA
70698675 CACG-CTGAGGTAATTTCAATTT
63 CACGTC-GAGGTAATTTCAATTT
70698697 CTGTTGTCAA
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
89 1 0.01
90 32 0.42
91 2 0.03
92 42 0.55
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (89 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACAC
GTCGAGGTAATTTCAATTTTCGTT
Found at i:70698869 original size:79 final size:78
Alignment explanation
Indices: 70698770--70699460 Score: 537
Period size: 77 Copynumber: 8.7 Consensus size: 78
70698760 TTTCAATTTC
* *
70698770 ATTTTTAATTTCTG-CTTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
1 ATTTTCAATTTCTGTC-TTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
** *
70698834 CTCACGTGCTGAGCT
64 CTCACACGCTGAGGT
** *
70698849 ATTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAT
1 ATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
70698913 CACACGCCGAGGT
66 CACACGCTGAGGT
*
70698926 ATTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 ATTTTCAATTTCTGTCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG
70698991 ---ACACGCTGAGGT
64 CTCACACGCTGAGGT
* * * * * *
70699003 AATTTCAATTTCTGT-TGTC-AAAAAAATC-ACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGG-
1 ATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
**
70699064 TCACACGCCAAGGT
65 TCACACGCTGAGGT
70699078 ATTTTCAATTTCTGTTTTTCAATTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGA-GTGAGT
1 ATTTTCAATTTCTG-----------T-CTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * *
70699142 TGAGCCTTGCCTCACGCGCTGAGCT
54 TGAGCCTTGGCTCACACGCTGAGGT
* * *
70699167 A-TTTCAATTTCTGT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGAT
1 ATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
70699229 CACAC-TTGAGGT
66 CACACGCTGAGGT
* * * * *
70699241 ATTTTTTTCAATTTAT-T-TTTCAAAAAAAATAAAACTTACATTGCGAGATGTGAGTTGAGCC-T
1 A---TTTTCAATTTCTGTCTTTCAAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTT
* *
70699303 GAGGTCACATG-TCGAGGT
62 G-GCTCACACGCT-GAGGT
* *** * *
70699321 ATTTTCATAATCTTTTTCAGATTCTGTTTTCAAAAAATTAAC-CATATTGCGA-AAGTGAGTTGA
1 ATTTTC--AA----TTTCTG--TCT-TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* ** *
70699384 -CCTTAGCTCACGTGCTGA-CT
57 GCCTTGGCTCACACGCTGAGGT
* *
70699404 ATTTTCAATTTCT-TTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 ATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
70699461 TTTTTAATTC
Statistics
Matches: 497, Mismatches: 67, Indels: 99
0.75 0.10 0.15
Matches are distributed among these distances:
73 41 0.08
74 52 0.10
75 55 0.11
76 4 0.01
77 109 0.22
78 19 0.04
79 90 0.18
80 8 0.02
81 2 0.00
83 10 0.02
84 11 0.02
85 12 0.02
86 10 0.02
87 4 0.01
88 25 0.05
89 32 0.06
90 13 0.03
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (78 bp):
ATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
CACACGCTGAGGT
Found at i:70698983 original size:317 final size:314
Alignment explanation
Indices: 70698610--70699302 Score: 1094
Period size: 316 Copynumber: 2.2 Consensus size: 314
70698600 TCAATTTTCG
*
70698610 TTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
70698675 CACGCTGAGGTAATTTCAATTTCTGTTGTC-AAAAAATCACTCGTATTGT-GAGGCGAGTTGAGC
66 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCACTCGTATTGTAGAGGCGAGTTGAGC
*
70698738 CTCAGGTCACACGCCGAGGTATTTTCAATTTC-ATTTTT-AATTTCTGCTTTTCAAAAAAAAATC
131 CTCAGGTCACACGCCAAGGTATTTTCAATTTCTATTTTTCAA-TTCTGC-TTTC-AAAAAAAATC
* * *
70698801 GACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTCT
193 AACTCATATTGCGAGA-GTGAGTTGAGCCTTGCCTCACGCGCTGAGCTA-TTTCAATTTCTGT-T
70698866 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTA
255 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACAC-CCGAGGTA
70698927 -TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTTCAATTTCTGTCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
70698991 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCACTCGTATTGTGAGAGGCGAGTTGA
65 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCACTCGTATTGT-AGAGGCGAGTTGA
*
70699056 GCCTCAGGTCACACGCCAAGGTATTTTCAATTTCTGTTTTTCAATTCTGCTTTCAAAAAAAATCA
129 GCCTCAGGTCACACGCCAAGGTATTTTCAATTTCTATTTTTCAATTCTGCTTTCAAAAAAAATCA
70699121 ACTCATATTGCGAGAGTGAGTTGAGCCTTGCCTCACGCGCTGAGCTATTTCAATTTCTGTTTTCA
194 ACTCATATTGCGAGAGTGAGTTGAGCCTTGCCTCACGCGCTGAGCTATTTCAATTTCTGTTTTCA
* * **
70699186 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACACTTGAGGTA
259 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACCCGAGGTA
* * * * *
70699242 TTTTTTTCAATTTAT-T-TTTCAAAAAAAATAAAACTTACATTGCGAGATGTGAGTTGAGCCT
1 --TTTTTCAATTTCTGTCTTTCAAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCT
70699303 GAGGTCACAT
Statistics
Matches: 351, Mismatches: 15, Indels: 21
0.91 0.04 0.05
Matches are distributed among these distances:
315 15 0.04
316 100 0.28
317 89 0.25
318 60 0.17
319 25 0.07
320 49 0.14
321 11 0.03
322 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (314 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCACTCGTATTGTAGAGGCGAGTTGAGC
CTCAGGTCACACGCCAAGGTATTTTCAATTTCTATTTTTCAATTCTGCTTTCAAAAAAAATCAAC
TCATATTGCGAGAGTGAGTTGAGCCTTGCCTCACGCGCTGAGCTATTTCAATTTCTGTTTTCAAA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACCCGAGGTA
Done.