Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 213 of 332
Found at i:70699244 original size:74 final size:76
Alignment explanation
Indices: 70699093--70699460 Score: 267
Period size: 74 Copynumber: 4.7 Consensus size: 76
70699083 CAATTTCTGT
*
70699093 TTTTCAA-TTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTT-GCCTC
1 TTTTCAATTTCTGTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAG-CTC
*
70699155 ACGC-GCTGAGCTA
64 ACACTG-TGAGCTA
* *
70699168 -TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCAC
*
70699232 ACT-TGAGGTA
66 ACTGTGAGCTA
* * * * * *
70699242 TTTTTTTCAATTTAT-TTTTCAAAAAAAATAAAACTTACATTGCGAGATGTGAGTTGAGCCTGAG
1 ---TTTTCAATTTCTGTTTTC-AAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTTAG
* *
70699306 GTCACA-TGTCGAGGTA
61 CTCACACTGT-GAGCTA
* ** * *
70699322 TTTTCATAATCTTTTTCAGATTCTGTTTTCAAAAAATTAAC-CATATTGCGA-AAGTGAGTTGA-
1 TTTTC--AA----TTTC----TGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
70699384 CCTTAGCTCAC-GTGCTGA-CTA
55 CCTTAGCTCACACTG-TGAGCTA
*
70699405 TTTTCAATTTCTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTGTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
70699461 TTTTTAATTC
Statistics
Matches: 235, Mismatches: 28, Indels: 59
0.73 0.09 0.18
Matches are distributed among these distances:
72 9 0.04
73 6 0.03
74 47 0.20
75 37 0.16
76 2 0.01
77 14 0.06
78 19 0.08
79 36 0.15
80 6 0.03
81 2 0.01
83 10 0.04
84 13 0.06
85 11 0.05
86 8 0.03
87 4 0.02
88 8 0.03
89 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCAC
ACTGTGAGCTA
Found at i:70699245 original size:163 final size:166
Alignment explanation
Indices: 70698474--70699233 Score: 921
Period size: 164 Copynumber: 4.7 Consensus size: 166
70698464 TTGTTTTAAT
*
70698474 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-ACACG-TGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGCTAATTTCAATTTCTGTTG
* * * * *
70698537 TCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTC
66 TCAAAAAAATC-ACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCAAGGTATTTTC
*
70698602 AATTT-TCGTTTTTCAATTTCTGCCTTTC-AAAAAAAA
130 AATTTCT-GTTTTTCAATTTCTGTCTTTCAAAAAAAAA
* *
70698638 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGCTAATTTCAATTTCTGTTG
* * * *
70698703 TC-AAAAAATCACTCGTATT--GTGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCA
66 TCAAAAAAATCACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCAAGGTATTTTCA
*
70698765 ATTTC-ATTTTT-AATTTCTG-CTTTTCAAAAAAAAA
131 ATTTCTGTTTTTCAATTTCTGTC-TTTCAAAAAAAAA
* ** * *
70698799 TCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACAC--GCTGAGCTAATTTCAATTTCTGT
* * *
70698864 CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGG----
64 -TGTCAAAAAAATC-ACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCAAGGTATT
70698925 -T--A-------TTTTCAATTTCTGTCTTTCAAAAAAAAA
127 TTCAATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAAAA
* *
70698955 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGCTAATTTCAATTTCTGTTG
* * *
70699020 TCAAAAAAATCACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCA
66 TCAAAAAAATCACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCAAGGTATTTTCA
70699085 ATTTCTGTTTTTCAA-TTCTG-CTTTC-AAAAAAAA
131 ATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAAAA
** *
70699118 TCAACTCATATTGCGAGA-GTGAGTTGAGCCTTGCCTCACGCGCTGAGCT-ATTTCAATTTCTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCC-T-CAGCACACGCTGAGCTAATTTCAATTTCTGT
* * * *
70699181 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACAC
64 TGTCAAAAAAATC-ACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACAC
70699234 TTGAGGTATT
Statistics
Matches: 524, Mismatches: 41, Indels: 62
0.84 0.07 0.10
Matches are distributed among these distances:
152 41 0.08
153 12 0.02
154 21 0.04
155 4 0.01
156 56 0.11
157 2 0.00
159 2 0.00
160 12 0.02
161 49 0.09
162 56 0.11
163 75 0.14
164 96 0.18
165 26 0.05
166 40 0.08
168 32 0.06
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (166 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGCTAATTTCAATTTCTGTTG
TCAAAAAAATCACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCAAGGTATTTTCA
ATTTCTGTTTTTCAATTTCTGTCTTTCAAAAAAAAA
Found at i:70699447 original size:239 final size:236
Alignment explanation
Indices: 70698850--70699463 Score: 708
Period size: 239 Copynumber: 2.6 Consensus size: 236
70698840 TGCTGAGCTA
* * *
70698850 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAA-TTCTGT-TTTCAAAAAAATCAACTCATATTGCGA-AAGTGAGTTGAGCCTTAGCTCA
* * * *
70698915 CACGCCGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
63 CGCGCTGAGCTATTTTCAATTTCT-TTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * * * ** *
70698980 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCACTCGTATTGTGAG
125 TGAGCTTTAGGACACACTGAGGTAATTTCAATTTATGTTGTCAAAAAAATAACTCACATTGCGAG
*
70699045 AGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATTTCTGT
190 AGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATATC-GT
* *
70699093 TTTTCAATTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTT-GCCTCAC
1 TTTTCAATTCTGTTTTC-AAAAAAATCAACTCATATTGCGAAAGTGAGTTGAGCCTTAG-CTCAC
*
70699157 GCGCTGAGCTA-TTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
64 GCGCTGAGCTATTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * *
70699221 CTTTA-GATCACACTTGAGGTATTTTTTTCAATTTAT-TTTTCAAAAAAAATAAAACTTACATTG
129 CTTTAGGA-CACAC-TGAGGTA---ATTTCAATTTATGTTGTC-AAAAAAAT--AACTCACATTG
* * * * * *
70699284 CGAGATGTGAGTTGAGCCTGAGGTCACATGTCGAGGTATTTTC-ATAATC-T
186 CGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAAT-ATCGT
*
70699334 TTTTCAGATTCTGTTTTC-AAAAAATTAAC-CATATTGCGAAAGTGAGTTGA-CCTTAGCTCACG
1 TTTTCA-ATTCTGTTTTCAAAAAAATCAACTCATATTGCGAAAGTGAGTTGAGCCTTAGCTCACG
*
70699396 TGCTGA-CTATTTTCAATTTCTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAG
65 CGCTGAGCTATTTTCAATTTCTTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG
70699460 CTTT
129 CTTT
70699464 TTAATTCTGC
Statistics
Matches: 323, Mismatches: 33, Indels: 34
0.83 0.08 0.09
Matches are distributed among these distances:
236 2 0.01
237 46 0.14
238 45 0.14
239 58 0.18
240 26 0.08
241 54 0.17
242 40 0.12
243 52 0.16
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (236 bp):
TTTTCAATTCTGTTTTCAAAAAAATCAACTCATATTGCGAAAGTGAGTTGAGCCTTAGCTCACGC
GCTGAGCTATTTTCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCT
TTAGGACACACTGAGGTAATTTCAATTTATGTTGTCAAAAAAATAACTCACATTGCGAGAGGCGA
GTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATATCGT
Found at i:70699484 original size:29 final size:28
Alignment explanation
Indices: 70699442--70699499 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 28
70699432 CAACTCATAT
*
70699442 TGCGAGAGGTGAGTTGAGCTTTTTAATTC
1 TGCGAGAGGTGAGTTGAG-TCTTTAATTC
*
70699471 TGCGAGAGTTGAGTTGAGTCTTTAATTC
1 TGCGAGAGGTGAGTTGAGTCTTTAATTC
70699499 T
1 T
70699500 ATTTTCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.40
Consensus pattern (28 bp):
TGCGAGAGGTGAGTTGAGTCTTTAATTC
Found at i:70699525 original size:239 final size:233
Alignment explanation
Indices: 70698474--70699698 Score: 770
Period size: 238 Copynumber: 5.1 Consensus size: 233
70698464 TTGTTTTAAT
* * * * *
70698474 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---ACACGTGAGGTA---ATTTCAATTTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACACTTGAGGTATGTCTTTCAATTTAT
* * * * *
70698533 GTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
66 -TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGTCGAGGTAT
* * *
70698598 TTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
128 TTTCAA--ATC-TTTTTCAA-TTCTG-TTTTC--AAAAAATCAACTCATATTGCGA-AAGTGAGT
* ** * * * *
70698663 TGAGCCTCAGGACAC-GCTGAGGTAATTTCAATTTCTGTTGTC-AAAAAA
185 TGA-CCTTAGCTCACGGCTGAGCTATTTTCAATTTCTTTTTTCAAAAAAA
* * * * * * ** *
70698711 TC-ACTCGTATT--GTGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCATT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACAC-TTGAGGTA-TGTC--TTTC---
* * *
70698773 TTTAATTTCTGCTTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
59 ---AATTTAT--TTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TC
* *
70698837 ACGTG-CTGAGCTATTTTC-AA------T---TTCTGTCTTTCAAAAAAATCAACTCATATTGCG
114 ACATGTC-GAGGTATTTTCAAATCTTTTTCAATTCTGT-TTTC-AAAAAATCAACTCATATTGCG
* * * * * * *
70698891 AGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAA
176 A-AAGTGAGTTGA-CCTTAGCTCAC-GGCTGAGCTATTTTCAATTTCT-TTTTTC--AAAAAAA
* * * * *
70698955 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACGC-TGAGGTA---ATTTCAATTTC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTTA-GATCACACTTGAGGTATGTCTTTCAATTTA
* * * * * * *
70699015 TGTTGTCAAAAAAATC-ACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTA
65 T-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGTCGAGGTA
* * *
70699079 TTTTCAATTTCTGTTTTTCAATTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGAGTGAGTTG
127 TTTTCAA-ATC--TTTTTCAATTCTGTTTTC--AAAAAATCAACTCATATTGCGAAAGTGAGTTG
*
70699144 AGCCTT-GCCTCACGCGCTGAGCTA-TTTCAATTTCTGTTTTCAAAAAAA
187 A-CCTTAG-CTCACG-GCTGAGCTATTTTCAATTTCTTTTTTCAAAAAAA
* *
70699192 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACACTTGAGGTATTTTTTTCAATTTAT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACACTTGAGGTATGTCTTTCAATTTAT
* * * * *
70699257 TTTTCAAAAAAAATAAAACTTACATTGCGAGATGTGAGTTGAGCCTGAGGTCACATGTCGAGGTA
66 TTTTC---AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGTCGAGGTA
*
70699322 TTTTCATAATCTTTTTCAGATTCTGTTTTCAAAAAATTAAC-CATATTGCGAAAGTGAGTTGACC
127 TTTTCA-AATCTTTTTCA-ATTCTGTTTTCAAAAAATCAACTCATATTGCGAAAGTGAGTTGACC
70699386 TTAGCTCACGTGCTGA-CTATTTTCAATTTCTTTTTTCAAAAAAA
190 TTAGCTCACG-GCTGAGCTATTTTCAATTTCTTTTTTCAAAAAAA
* * *
70699430 TTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTCTGCGAGAGTTGAGTTGA-GTCTT
1 -TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTTAGA---T-C-ACACTTGAGGT-ATGTCTT
* *
70699493 T-AATTCTA-TTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCA-GTCACATAT
57 TCAATT-TATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGGTCACATGT
* **
70699554 CGAGGTATTTTCAAATCCTTTTCAAGTTAAGTTTTCAAAAAATCAACTCATATTGCGAGAGAGTG
120 CGAGGTATTTTCAAATCTTTTTCAA-TTCTGTTTTCAAAAAATCAACTCATATTGCGA-A-AGTG
* * ** * * *
70699619 AGTTGAGCTCAGGACAC-GCTGAGGTATTTTAAATTTATATTTTTC--AAAAA
182 AGTTGACCTTAGCTCACGGCTGAGCTATTTTCAATTTCT-TTTTTCAAAAAAA
* *
70699669 TCAACTCATATTGCAAGATGTGAGTTGAGC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGC
70699699 CTTGGTTCAC
Statistics
Matches: 808, Mismatches: 101, Indels: 157
0.76 0.09 0.15
Matches are distributed among these distances:
229 40 0.05
230 13 0.02
232 4 0.00
233 7 0.01
234 19 0.02
236 10 0.01
237 53 0.07
238 152 0.19
239 136 0.17
240 65 0.08
241 83 0.10
242 38 0.05
243 48 0.06
244 23 0.03
245 28 0.03
246 1 0.00
247 22 0.03
248 1 0.00
250 7 0.01
251 4 0.00
252 4 0.00
253 50 0.06
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (233 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCACACTTGAGGTATGTCTTTCAATTTAT
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGTCGAGGTATTTT
CAAATCTTTTTCAATTCTGTTTTCAAAAAATCAACTCATATTGCGAAAGTGAGTTGACCTTAGCT
CACGGCTGAGCTATTTTCAATTTCTTTTTTCAAAAAAA
Found at i:70699537 original size:482 final size:471
Alignment explanation
Indices: 70698474--70699724 Score: 1216
Period size: 482 Copynumber: 2.6 Consensus size: 471
70698464 TTGTTTTAAT
*
70698474 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACG-TGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTG
*
70698537 TCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTC
66 TC--AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTC
*
70698602 AATTT-TCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
129 AATTTCT-GTTTTTCAAGTTCTG-CTTTCAAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGA
* * *
70698666 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAATC-ACTCGTATT--GTGAGG
191 GCCTCAGGACACGCTGAGGT-ATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGG
* * * ** *
70698728 CGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCATTTTTAATTTCTGCTTTTCAAA
255 TGAGTTGAGCCTTAGATCACAC-TTGAGGTATTTT---TTTC-----TAATTTAT-CTTTTCAAA
** * *
70698793 AAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
310 AAAAAATAAACTCACATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAAT
* *
70698858 TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGA
375 TTCAGTCTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGATCACACGCCGA
*
70698923 GGTATTTTCAATTTCTGTCTTTCAAAAAAAAA
440 GCTATTTTCAATTTCTGTCTTTCAAAAAAAAA
*
70698955 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTG
* * *
70699020 TCAAAAAAATC-ACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTC
66 TC--AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTC
70699084 AATTTCTGTTTTTCAA-TTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCC
129 AATTTCTGTTTTTCAAGTTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCC
*** * *
70699148 TTGCCTCACGCGCTGAGCTATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGT
194 -T-CAGGACACGCTGAGGTATTTCAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGT
*
70699213 GAGTTGAGCTTTAGATCACACTTGAGGTATTTTTTTC-AATTTAT-TTTTC-AAAAAAAATAAAA
256 GAGTTGAGCCTTAGATCACACTTGAGGTATTTTTTTCTAATTTATCTTTTCAAAAAAAAAT-AAA
* * * *
70699275 CTTACATTGCGAGATGTGAGTTGAGCC-TGAGGTCACATG-TCGAGGTATTTTCATAATCTTTTT
320 CTCACATTGCGAGAGGTGAGTTGAGCCTTG-GCTCACATGCT-GAGCTATTTTC--AA----TTT
* * * **
70699338 CAGATTCTGTTTTC-AAAAAATTAAC-CATATTGCGA-AAGTGAGTTGA-CCTTAGCTCACGTGC
377 CAG--TC---TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGATCACACGC
* * *
70699399 TGA-CTATTTTCAATTTCT-TTTTTC-AAAAAAAT
437 CGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAAA
* * * * * * *
70699431 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTCTGCGAGA-GTTGAGTTGAGTCTTTA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGC-------CTCAG-GACACGCTGAGGT-AAT-TTCA
* * * * **
70699495 A-TTCTATTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCA-GTCACATATCGA
56 ATTTCTATTGTCAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCT-CAGGTCACACGTCGA
* * ** *
70699557 GGTATTTTCAA-ATC--CTTTTCAAGTTAAGTTTTC--AAAAAATCAACTCATATTGCGAGAGAG
120 GGTATTTTCAATTTCTGTTTTTCAAGTTCTGCTTTCAAAAAAAATCAACTCATATTGC--GAGAG
* * *
70699617 TGAGTTGAG-CTCAGGACACGCTGAGGTATTTTAAATTTATATTTTTC-AAAAATCAACTCATAT
183 TGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTCAATTTCT-GTTTTCAAAAAATCAACTCATAT
* * * *
70699680 TGCAAGATGTGAGTTGAGCCTTGGTTCACA-TGTCGAGGTATTTTT
246 TGCGAGAGGTGAGTTGAGCCTTAGATCACACT-T-GAGGTATTTTT
70699725 CAAAATCTAC
Statistics
Matches: 655, Mismatches: 73, Indels: 87
0.80 0.09 0.11
Matches are distributed among these distances:
471 12 0.02
472 47 0.07
474 8 0.01
476 38 0.06
477 59 0.09
478 60 0.09
479 38 0.06
480 86 0.13
481 76 0.12
482 131 0.20
483 60 0.09
484 36 0.05
485 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (471 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTG
TCAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAA
TTTCTGTTTTTCAAGTTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTC
AGGACACGCTGAGGTATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTTAGATCACACTTGAGGTATTTTTTTCTAATTTATCTTTTCAAAAAAAAATAAACTCACA
TTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGCTATTTTCAATTTCAGTCTTTCAAAAA
AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGATCACACGCCGAGCTATTTTCAATTTCT
GTCTTTCAAAAAAAAA
Found at i:70785326 original size:29 final size:29
Alignment explanation
Indices: 70785280--70785440 Score: 175
Period size: 29 Copynumber: 5.3 Consensus size: 29
70785270 GGTACAAGTG
*
70785280 GTGGTGGAGAAGGTGTGGCTAGTGGAGTT
1 GTGGTGGAAAAGGTGTGGCTAGTGGAGTT
* *
70785309 GTGGTGGAAAAAGAGTGGCTAGTGGAGGTT
1 GTGGTGGAAAAGGTGTGGCTAGTGGA-GTT
70785339 GGTGGTGGGGAAAAGGTGTGGCTAGTGGAGTT
1 -GTGGT--GGAAAAGGTGTGGCTAGTGGAGTT
*
70785371 G-GGTGGTGAAAA-GAGTGGCTAGTGGAGTT
1 GTGGT-G-GAAAAGGTGTGGCTAGTGGAGTT
*
70785400 -TGGTGTGGAAAGGTGTGGCTTAGTGGAGTT
1 GTGGTG-GAAAAGGTGTGGC-TAGTGGAGTT
70785430 GGTGGTGGAAA
1 -GTGGTGGAAA
70785441 GGATGGCTGT
Statistics
Matches: 113, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
28 6 0.05
29 50 0.44
30 21 0.19
31 9 0.08
32 8 0.07
33 19 0.17
ACGTcount: A:0.21, C:0.03, G:0.50, T:0.26
Consensus pattern (29 bp):
GTGGTGGAAAAGGTGTGGCTAGTGGAGTT
Found at i:70785383 original size:62 final size:60
Alignment explanation
Indices: 70785277--70785441 Score: 221
Period size: 62 Copynumber: 2.7 Consensus size: 60
70785267 GTAGGTACAA
* *
70785277 GTGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGTGGTGG-AAAAAGAGTGGCTAGTGGAGGTT
1 GTGGTGG-GGAAAAGGTGTGGCTAGTGGAGTTG-GGTGGTGAAAAGAGTGGCTAGTGGA-GTT
70785339 GGTGGTGGGGAAAAGGTGTGGCTAGTGGAGTTGGGTGGTGAAAAGAGTGGCTAGTGGAGTT
1 -GTGGTGGGGAAAAGGTGTGGCTAGTGGAGTTGGGTGGTGAAAAGAGTGGCTAGTGGAGTT
* *
70785400 -TGGTGTGG-AAAGGTGTGGCTTAGTGGAGTT-GGTGGTGGAAAG
1 GTGGTGGGGAAAAGGTGTGGC-TAGTGGAGTTGGGTGGTGAAAAG
70785442 GATGGCTGTT
Statistics
Matches: 96, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
58 22 0.23
59 17 0.18
61 8 0.08
62 42 0.44
63 7 0.07
ACGTcount: A:0.21, C:0.03, G:0.50, T:0.26
Consensus pattern (60 bp):
GTGGTGGGGAAAAGGTGTGGCTAGTGGAGTTGGGTGGTGAAAAGAGTGGCTAGTGGAGTT
Found at i:70787842 original size:29 final size:28
Alignment explanation
Indices: 70787751--70787877 Score: 202
Period size: 28 Copynumber: 4.5 Consensus size: 28
70787741 TATTAAGGTC
* *
70787751 CGCACACTCAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70787778 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70787806 CGCACACTTAGTGCTACATAATGCAAACT
1 CGCACACTTAGTGCTATATAAT-CAAACT
70787835 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
70787863 CGCACACTTTAGTGC
1 CGCACAC-TTAGTGC
70787878 AGTACAATTT
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
27 21 0.23
28 38 0.41
29 34 0.37
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70787843 original size:57 final size:55
Alignment explanation
Indices: 70787751--70787877 Score: 200
Period size: 57 Copynumber: 2.3 Consensus size: 55
70787741 TATTAAGGTC
* * *
70787751 CGCACACTCAGTGTTATATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
70787806 CGCACACTTAGTGCTACATAATGCAAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAAT-C-AACTCGCACACTTAGTGCTATATAATCAAACT
70787863 CGCACACTTTAGTGC
1 CGCACAC-TTAGTGC
70787878 AGTACAATTT
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
55 19 0.29
56 1 0.02
57 39 0.59
58 7 0.11
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:70791005 original size:38 final size:40
Alignment explanation
Indices: 70790890--70791072 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
70790880 GCTACTCGTT
*
70790890 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70790930 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
70790969 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70791007 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70791048 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70791073 CATCATTCAA
Statistics
Matches: 124, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 35 0.28
39 36 0.29
40 42 0.34
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70791056 original size:78 final size:79
Alignment explanation
Indices: 70790890--70791072 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 79
70790880 GCTACTCGTT
* *
70790890 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAATGCCTTCGGGACTTAACCCGG
* *
70790954 ATTTAGTAACTCGCA
65 ATATAGTAACTAGCA
* **
70790969 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCG
* *
70791031 GATATGGTCACTTAGCA
64 GATATAGTAAC-TAGCA
70791048 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70791073 CATCATTCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
77 24 0.27
78 33 0.37
79 21 0.24
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCA
Found at i:70798935 original size:79 final size:82
Alignment explanation
Indices: 70798824--70799008 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70798814 GCTACTCGTT
* * *
70798824 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70798887 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
70798904 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
70798967 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
70798984 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70799009 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:70799008 original size:40 final size:40
Alignment explanation
Indices: 70798805--70799008 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
70798795 CGGAATTTAA
** *
70798805 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
70798845 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70798885 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70798924 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70798964 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70799004 CCGGA
1 CCGGA
70799009 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70804962 original size:28 final size:28
Alignment explanation
Indices: 70804894--70805047 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
70804884 CATGAGATTG
* * * *
70804894 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
70804923 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70804951 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
70804979 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70805007 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70805034 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
70805048 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.65
29 18 0.16
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70810433 original size:26 final size:26
Alignment explanation
Indices: 70810404--70810456 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
70810394 TTTACAGTTT
70810404 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
70810430 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
70810456 T
1 T
70810457 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:70818443 original size:26 final size:26
Alignment explanation
Indices: 70818414--70818466 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
70818404 TTTACAATTT
*
70818414 TACCTCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
70818440 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
70818466 T
1 T
70818467 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:70823494 original size:75 final size:75
Alignment explanation
Indices: 70823344--70823494 Score: 266
Period size: 75 Copynumber: 2.0 Consensus size: 75
70823334 AAGCTTAAAG
70823344 AACTTATATATCGAATTTATTAAACTTTTAGTTAATGAAAAATCTACTCATTGTACTCATAATTC
1 AACTTATATATCGAATTTATTAAACTTTTAGTTAATGAAAAATCTACTCATTGTACTCATAATTC
70823409 ATATGAAAAA
66 ATATGAAAAA
* * *
70823419 AACTTATTTATCGAATTTATTAAACTTTTAGTTAATGAAAAAATCTACTCGTTGTACTTATAATT
1 AACTTATATATCGAATTTATTAAACTTTTAGTTAATG-AAAAATCTACTCATTGTACTCATAATT
70823484 CATATGAAAAA
65 CATATGAAAAA
70823495 TGAACACGAA
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
75 36 0.50
76 36 0.50
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (75 bp):
AACTTATATATCGAATTTATTAAACTTTTAGTTAATGAAAAATCTACTCATTGTACTCATAATTC
ATATGAAAAA
Found at i:70826001 original size:38 final size:38
Alignment explanation
Indices: 70825951--70826050 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 38
70825941 ATCCTAGAAA
*
70825951 AAAAAAGAATTTAAAAAGAAGATAATCTTGGGTTGTTG
1 AAAAAAGAATTTAAAAAGAAGATAATCTTGGATTGTTG
*
70825989 AAAAAATAATTTAAAAAGAGGAGAAGATAATCTTGGATTGTTG
1 AAAAAAGAATTT--AAA-A--AGAAGATAATCTTGGATTGTTG
70826032 AAAAAAGAATTTAAAAAGA
1 AAAAAAGAATTTAAAAAGA
70826051 TGAGAAGATA
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
38 14 0.26
40 4 0.07
41 4 0.07
43 32 0.59
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (38 bp):
AAAAAAGAATTTAAAAAGAAGATAATCTTGGATTGTTG
Found at i:70826016 original size:43 final size:43
Alignment explanation
Indices: 70825967--70826061 Score: 163
Period size: 43 Copynumber: 2.2 Consensus size: 43
70825957 GAATTTAAAA
* *
70825967 AGAAGATAATCTTGGGTTGTTGAAAAAATAATTTAAAAAGAGG
1 AGAAGATAATCTTGGATTGTTGAAAAAAGAATTTAAAAAGAGG
*
70826010 AGAAGATAATCTTGGATTGTTGAAAAAAGAATTTAAAAAGATG
1 AGAAGATAATCTTGGATTGTTGAAAAAAGAATTTAAAAAGAGG
70826053 AGAAGATAA
1 AGAAGATAA
70826062 ACATAGGTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.49, C:0.02, G:0.22, T:0.26
Consensus pattern (43 bp):
AGAAGATAATCTTGGATTGTTGAAAAAAGAATTTAAAAAGAGG
Found at i:70826073 original size:43 final size:42
Alignment explanation
Indices: 70825967--70826074 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 42
70825957 GAATTTAAAA
* *
70825967 AGAAGATAATCTTGGGTTGTTGAAAAAATAATTTAAAAAGAGG
1 AGAAGATAATC-TAGGTTGTTGAAAAAAGAATTTAAAAAGAGG
* *
70826010 AGAAGATAATCTTGGATTGTTGAAAAAAGAATTTAAAAAGATG
1 AGAAGATAATCTAGG-TTGTTGAAAAAAGAATTTAAAAAGAGG
*
70826053 AGAAGATAAACATAGGTTGTTG
1 AGAAGATAATC-TAGGTTGTTG
70826075 GATTTACCCT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
42 3 0.05
43 52 0.90
44 3 0.05
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (42 bp):
AGAAGATAATCTAGGTTGTTGAAAAAAGAATTTAAAAAGAGG
Found at i:70832762 original size:23 final size:23
Alignment explanation
Indices: 70832712--70832765 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
70832702 AGCTTATATA
**
70832712 AGCTTACCGTTTCAGCTCTTTGG
1 AGCTTACCGTTTCAGCTCTACGG
* *
70832735 GGCTTATCGTTTCAGCTCTACGG
1 AGCTTACCGTTTCAGCTCTACGG
70832758 AGCTTACC
1 AGCTTACC
70832766 ATTCATCTCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.15, C:0.28, G:0.22, T:0.35
Consensus pattern (23 bp):
AGCTTACCGTTTCAGCTCTACGG
Found at i:70832980 original size:9 final size:9
Alignment explanation
Indices: 70832968--70833022 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
70832958 TAAGAGCTAT
*
70832968 ATGATTTAC
1 ATGAATTAC
70832977 ATGAATT--
1 ATGAATTAC
70832984 AT-AAGTTAC
1 ATGAA-TTAC
*
70832993 ATGATTTAC
1 ATGAATTAC
*
70833002 ATGAATTAT
1 ATGAATTAC
70833011 ATGAATTAC
1 ATGAATTAC
70833020 ATG
1 ATG
70833023 GATATTATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (9 bp):
ATGAATTAC
Found at i:70840413 original size:23 final size:23
Alignment explanation
Indices: 70840385--70840465 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 23
70840375 TAGCTCATAT
70840385 GAGCTTACCGTTTCAGCTCTTTG
1 GAGCTTACCGTTTCAGCTCTTTG
* * *
70840408 GGGCTTATCGTTTCAGCT-TTACG
1 GAGCTTACCGTTTCAGCTCTT-TG
* *
70840431 GAGCTTACCG-TTCATCTCTTTA
1 GAGCTTACCGTTTCAGCTCTTTG
*
70840453 GAGCTTATCGTTT
1 GAGCTTACCGTTT
70840466 ATCAGCTCAG
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 17 0.37
23 29 0.63
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.41
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCTTTG
Found at i:70840654 original size:9 final size:9
Alignment explanation
Indices: 70840642--70840696 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
70840632 TAAGAGCTAT
*
70840642 ATGATTTAC
1 ATGAATTAC
70840651 ATGAATT--
1 ATGAATTAC
70840658 AT-AAGTTAC
1 ATGAA-TTAC
*
70840667 ATGATTTAC
1 ATGAATTAC
*
70840676 ATGAATTAT
1 ATGAATTAC
70840685 ATGAATTAC
1 ATGAATTAC
70840694 ATG
1 ATG
70840697 GATATTATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
6 2 0.05
7 4 0.11
9 30 0.81
10 1 0.03
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (9 bp):
ATGAATTAC
Found at i:70844504 original size:19 final size:20
Alignment explanation
Indices: 70844454--70844493 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
70844444 CATGTTTACA
70844454 CTCAATATATTGGTTTTTCT
1 CTCAATATATTGGTTTTTCT
70844474 CTCAATATATTGGTTTTTCT
1 CTCAATATATTGGTTTTTCT
70844494 TTACTCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (20 bp):
CTCAATATATTGGTTTTTCT
Found at i:70846636 original size:46 final size:48
Alignment explanation
Indices: 70846490--70846714 Score: 234
Period size: 46 Copynumber: 4.8 Consensus size: 48
70846480 CGTGGGTAAG
* *
70846490 ATGCCGATGCCATGTCCCAGA-ATGGTCTTACACTGGCTCATATCTC-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA
** * *
70846536 ATGTTGATGCCATGTACCAGACATGGTCTTACACTGAC-TATCATCTC-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCA
* * *
70846583 GTAGCCGATG-CATGTCCCAGATAT-GTCTTACACTGGCTTACGTCTCA
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA
* * * * *
70846630 AGGCCGATG-CATGTCCCAAACAT-ATCTTACACTAGCTCT-CGTCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCA
70846676 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
70846715 CTCATAATGT
Statistics
Matches: 148, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
46 82 0.55
47 49 0.33
48 17 0.11
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA
Found at i:70846690 original size:93 final size:93
Alignment explanation
Indices: 70846490--70846715 Score: 255
Period size: 93 Copynumber: 2.4 Consensus size: 93
70846480 CGTGGGTAAG
* * **
70846490 ATGCCGATGCCATGTCCCAGAATGGTCTTACACTGGCTCATATCTCATGTTGATGCCATGTACCA
1 ATGCCGATGCCATGTCCCAGAATGGTCTTACACTGGCTCACATCTCAGGCCGATGCCATGTACCA
* *
70846555 GACATGGTCTTACACTGACTATCATCTC
66 AACATGATCTTACACTGACTATCATCTC
* * * *
70846583 GTAGCCGATG-CATGTCCCAGATAT-GTCTTACACTGGCTTACGTCTCAAGGCCGATG-CATGTC
1 AT-GCCGATGCCATGTCCCAGA-ATGGTCTTACACTGGCTCACATCTC-AGGCCGATGCCATGTA
* *
70846645 CCAAACAT-ATCTTACACT-AGCTCTCGTCTC
63 CCAAACATGATCTTACACTGA-CTATCATCTC
70846675 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 -ATGCCGATGCCATGTCCCAGA-ATGGTCTTACACTGGCTC
70846716 TCATAATGTG
Statistics
Matches: 111, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
91 1 0.01
92 24 0.22
93 57 0.51
94 29 0.26
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
ATGCCGATGCCATGTCCCAGAATGGTCTTACACTGGCTCACATCTCAGGCCGATGCCATGTACCA
AACATGATCTTACACTGACTATCATCTC
Found at i:70846734 original size:94 final size:92
Alignment explanation
Indices: 70846490--70846761 Score: 251
Period size: 94 Copynumber: 2.9 Consensus size: 92
70846480 CGTGGGTAAG
* * *
70846490 ATGCCGATGCCATGTCCCAGAATGGTCTTACACTGGCTCAT-ATCTCATGTTG--ATGCCATGTA
1 ATGCCGATGCCATGTCCCAGAATGGTCTTACACTGGCTCATCA--TAATGTGGCCATG-CATGTC
*
70846552 CCAGACATGGTCTTACACT-GACTATCATCTC
63 CCAGACAT-GTCTTACACTAG-CTCTCATCTC
* *
70846583 GTAGCCGATG-CATGTCCCAGATAT-GTCTTACACTGGCTTACGTC-TCAA---GGCCGATGCAT
1 AT-GCCGATGCCATGTCCCAGA-ATGGTCTTACACTGGC-T-CATCAT-AATGTGGCC-ATGCAT
* * *
70846642 GTCCCAAACATATCTTACACTAGCTCTCGTCTC
60 GTCCCAGACATGTCTTACACTAGCTCTCATCTC
70846675 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCCAATGCATGTC
1 -ATGCCGATGCCATGTCCCAGA-ATGGTCTTACACTGGCTCATCATAATGTGGCC-ATGCATGTC
*
70846739 CCAGACATGTATTACACTAGCTC
63 CCAGACATGTCTTACACTAGCTC
70846762 ACAAACAAAT
Statistics
Matches: 147, Mismatches: 15, Indels: 33
0.75 0.08 0.17
Matches are distributed among these distances:
91 5 0.03
92 26 0.18
93 54 0.37
94 60 0.41
95 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
ATGCCGATGCCATGTCCCAGAATGGTCTTACACTGGCTCATCATAATGTGGCCATGCATGTCCCA
GACATGTCTTACACTAGCTCTCATCTC
Found at i:70846737 original size:47 final size:46
Alignment explanation
Indices: 70846492--70846761 Score: 161
Period size: 46 Copynumber: 5.8 Consensus size: 46
70846482 TGGGTAAGAT
*
70846492 GCCGATGCCATGTCCCAGA-ATGGTCTTACACTGGCTCAT-ATCTCATGT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCA--TAATGTG
* * * * * *
70846540 --TGATGCCATGTACCAGACATGGTCTTACACTGACTATCAT-CTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAAT-GTG
*
70846586 GCCGATGCATGTCCCAGATATGTCTTACACTGGCTTACGTC-TCAA---G
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-T-C-TCAT-AATGTG
* * * *
70846632 GCCGATGCATGTCCCAAACATATCTTACACTAGCTCTCGTCTCAA--T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC--AT-AATGTG
70846678 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTG
* * *
70846726 GCCAATGCATGTCCCAGACATGTATTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
70846762 ACAAACAAAT
Statistics
Matches: 179, Mismatches: 23, Indels: 42
0.73 0.09 0.17
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 6 0.03
46 83 0.46
47 58 0.32
48 26 0.15
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTG
Found at i:70848938 original size:37 final size:36
Alignment explanation
Indices: 70848853--70848950 Score: 115
Period size: 37 Copynumber: 2.6 Consensus size: 36
70848843 TGATTTGTCT
70848853 TAAACTAAGACACATTAAAACGACTATTTAATATGTAC
1 TAAACTAAGACACATTAAAAC--CTATTTAATATGTAC
** * * *
70848891 TTCACTAAGACATATTAAACACCTATTTAATTTTTAC
1 TAAACTAAGACACATTAAA-ACCTATTTAATATGTAC
*
70848928 TAAACGAAGACACATTAAAACCT
1 TAAACTAAGACACATTAAAACCT
70848951 TAATTAAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
36 4 0.08
37 28 0.56
38 16 0.32
39 2 0.04
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (36 bp):
TAAACTAAGACACATTAAAACCTATTTAATATGTAC
Found at i:70849031 original size:9 final size:9
Alignment explanation
Indices: 70849004--70849041 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
70848994 ATTATGACAT
70849004 AATTAA-TA
1 AATTAACTA
*
70849012 ACTTAAACTA
1 AATT-AACTA
70849022 AATTAACTA
1 AATTAACTA
70849031 AATTAACTA
1 AATTAACTA
70849040 AA
1 AA
70849042 ACCAAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 3 0.12
9 18 0.69
10 5 0.19
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
AATTAACTA
Found at i:70866018 original size:19 final size:19
Alignment explanation
Indices: 70865996--70866032 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70865986 GATTAAAAAC
*
70865996 TATAAAACAAAGTAAAGTA
1 TATAAAACAAAATAAAGTA
*
70866015 TATAAAATAAAATAAAGT
1 TATAAAACAAAATAAAGT
70866033 TCTAATGCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.24
Consensus pattern (19 bp):
TATAAAACAAAATAAAGTA
Found at i:70867860 original size:40 final size:40
Alignment explanation
Indices: 70867816--70867996 Score: 285
Period size: 40 Copynumber: 4.5 Consensus size: 40
70867806 ATGGTCGCTA
* *
70867816 GCACAAATGCCTTCAGGACTTAGCCCAG-ATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTC
70867856 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
70867896 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
* * *
70867936 GCACAAATGCCTTC-GGACTTAGCCCGGAATTAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
*
70867975 GCACAAATGTCTTCGGGACTTA
1 GCACAAATGCCTTCGGGACTTA
70867997 ACCCCGTTAG
Statistics
Matches: 133, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
39 35 0.26
40 96 0.72
41 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
Found at i:70869365 original size:53 final size:52
Alignment explanation
Indices: 70869242--70869367 Score: 200
Period size: 53 Copynumber: 2.4 Consensus size: 52
70869232 CTCAAAGCTC
*
70869242 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
1 TTTTTCTTTCTTTTT-TTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
70869295 TTTTT-TTTCTTTCTTTTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTT
1 TTTTTCTTTC-TT-TTTTTTCTTCTATTCGGCCAAGAACAACATGAGAGC-TTTT
70869349 TTTTTCTTTCTTTTTTTTC
1 TTTTTCTTTCTTTTTTTTC
70869368 ATCATCATTT
Statistics
Matches: 68, Mismatches: 1, Indels: 8
0.88 0.01 0.10
Matches are distributed among these distances:
52 3 0.04
53 47 0.69
54 14 0.21
55 4 0.06
ACGTcount: A:0.16, C:0.20, G:0.10, T:0.55
Consensus pattern (52 bp):
TTTTTCTTTCTTTTTTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT
Found at i:70876047 original size:40 final size:40
Alignment explanation
Indices: 70875980--70876204 Score: 294
Period size: 40 Copynumber: 5.7 Consensus size: 40
70875970 GGATGTAACC
* * * * *
70875980 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* * *
70876019 GCTAGCACAAATGCCTTCGGGACTTAGCCCAG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
70876059 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
70876099 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
70876139 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
70876179 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
70876205 ACCCCGTTAG
Statistics
Matches: 167, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 6 0.04
40 159 0.95
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:70877560 original size:52 final size:51
Alignment explanation
Indices: 70877449--70877575 Score: 191
Period size: 53 Copynumber: 2.5 Consensus size: 51
70877439 ATTTCCTCAA
* * * *
70877449 AGCTCTTTTTCCTTCTTTTTCTTTCTTCTATTTGGCCAAGAACAACATGAG
1 AGCTTTTTTTCTTTCTTTTTTTTTCTTCTATTCGGCCAAGAACAACATGAG
*
70877500 AGTTTTTTTTTCTTTCTTTCTTTTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AG-CTTTTTTTCTTTCTTT-TTTTTTCTTCTATTCGGCCAAGAACAACATGAG
70877553 AGCTTTTTTTCTTTCTTTTTTTT
1 AGCTTTTTTTCTTTCTTTTTTTT
70877576 CATCATCATT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
51 7 0.10
52 28 0.41
53 33 0.49
ACGTcount: A:0.17, C:0.20, G:0.10, T:0.54
Consensus pattern (51 bp):
AGCTTTTTTTCTTTCTTTTTTTTTCTTCTATTCGGCCAAGAACAACATGAG
Found at i:70881568 original size:14 final size:14
Alignment explanation
Indices: 70881527--70881568 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
70881517 AAAATTAAAA
*
70881527 ATTGAGGATTGAGA
1 ATTGAGGATTGAGT
*
70881541 ATTTAGGATTGAGT
1 ATTGAGGATTGAGT
*
70881555 ATTGAGTATTGAGT
1 ATTGAGGATTGAGT
70881569 TGAAAAGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (14 bp):
ATTGAGGATTGAGT
Found at i:70881945 original size:19 final size:19
Alignment explanation
Indices: 70881884--70881945 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
70881874 TTTGGGTTGT
70881884 TTTTTATTAT-TTTTATAA
1 TTTTTATTATATTTTATAA
70881902 TATTTTATTTATATTTTA-ACA
1 T-TTTTA-TTATATTTTATA-A
* *
70881923 -TTTTATAATATTTTATGA
1 TTTTTATTATATTTTATAA
70881941 TTTTT
1 TTTTT
70881946 TAGTTTGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
18 11 0.31
19 14 0.39
20 5 0.14
21 6 0.17
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTATTATATTTTATAA
Found at i:70881947 original size:10 final size:10
Alignment explanation
Indices: 70881885--70881938 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
70881875 TTGGGTTGTT
*
70881885 TTTTATTAT-
1 TTTTATAATA
70881894 TTTTATAATA
1 TTTTATAATA
*
70881904 TTTTAT-TTA
1 TTTTATAATA
*
70881913 TATTT-TAACA
1 T-TTTATAATA
70881923 TTTTATAATA
1 TTTTATAATA
70881933 TTTTAT
1 TTTTAT
70881939 GATTTTTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
9 15 0.42
10 21 0.58
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTATAATA
Found at i:70883186 original size:16 final size:17
Alignment explanation
Indices: 70883150--70883191 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
70883140 AATTTAAGTT
70883150 AAAAAAATTCAAACCCG
1 AAAAAAATTCAAACCCG
**
70883167 AAAAAAATTCAAGTCC-
1 AAAAAAATTCAAACCCG
70883183 AAAAAAATT
1 AAAAAAATT
70883192 AAAATTGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.62, C:0.17, G:0.05, T:0.17
Consensus pattern (17 bp):
AAAAAAATTCAAACCCG
Found at i:70884982 original size:13 final size:13
Alignment explanation
Indices: 70884966--70884999 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
70884956 AAAATAAGTA
70884966 TATTAAATTCAAT
1 TATTAAATTCAAT
70884979 TATTAAATTCAAT
1 TATTAAATTCAAT
70884992 TA-TAAATT
1 TATTAAATT
70885000 TTAATAATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (13 bp):
TATTAAATTCAAT
Found at i:70895019 original size:27 final size:27
Alignment explanation
Indices: 70894988--70895164 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 27
70894978 TAAATTGTAC
*
70894988 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
70895015 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
70895041 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
70895069 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
70895096 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
70895123 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
70895150 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70895165 GACTAATATA
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:70895049 original size:54 final size:55
Alignment explanation
Indices: 70894988--70895164 Score: 234
Period size: 54 Copynumber: 3.3 Consensus size: 55
70894978 TAAATTGTAC
* **
70894988 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
70895043 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * *
70895096 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
70895150 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70895165 GACTAATATA
Statistics
Matches: 106, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 105 0.99
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:70895128 original size:81 final size:81
Alignment explanation
Indices: 70894989--70895143 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
70894979 AAATTGTACA
* * *
70894989 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
70895054 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
70895070 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
70895134 TGCGAGTTGA
65 TGCGAATTGA
70895144 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70895155 original size:81 final size:81
Alignment explanation
Indices: 70894985--70895164 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
70894975 GATTAAATTG
* * *
70894985 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70895050 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70895066 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
70895130 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
70895147 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70895165 GACTAATATA
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70903022 original size:27 final size:27
Alignment explanation
Indices: 70902991--70903167 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 27
70902981 TAAATTGTAC
*
70902991 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
70903018 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
70903044 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
70903072 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
70903099 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
70903126 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
70903153 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70903168 GACTTAATAT
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:70903052 original size:54 final size:55
Alignment explanation
Indices: 70902991--70903167 Score: 234
Period size: 54 Copynumber: 3.3 Consensus size: 55
70902981 TAAATTGTAC
* **
70902991 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
70903046 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * *
70903099 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
70903153 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70903168 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 105 0.99
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:70903131 original size:81 final size:81
Alignment explanation
Indices: 70902992--70903146 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
70902982 AAATTGTACA
* * *
70902992 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
70903057 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
70903073 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
70903137 TGCGAGTTGA
65 TGCGAATTGA
70903147 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70903158 original size:81 final size:81
Alignment explanation
Indices: 70902988--70903167 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
70902978 GATTAAATTG
* * *
70902988 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70903053 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70903069 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
70903133 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
70903150 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70903168 GACTTAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70904755 original size:39 final size:40
Alignment explanation
Indices: 70904628--70904843 Score: 281
Period size: 39 Copynumber: 5.5 Consensus size: 40
70904618 ATTCGGATGA
*
70904628 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTAT
70904667 ATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTG-CTAT
70904710 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTAT
70904749 ATCCGGGCTAAGTCCCGAAGGCA--T-TGCTAG-TGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CTAT
* *
70904786 AT-CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTAT
*
70904825 ATCC-GGCTAAAT-CCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
70904844 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 5, Indels: 25
0.84 0.03 0.13
Matches are distributed among these distances:
36 27 0.17
37 7 0.04
38 33 0.21
39 48 0.30
40 5 0.03
41 3 0.02
42 4 0.03
43 8 0.05
44 25 0.16
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTAT
Found at i:70912786 original size:40 final size:40
Alignment explanation
Indices: 70912731--70912954 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
70912721 TATTCGGATG
70912731 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
70912771 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
70912814 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
70912854 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
70912894 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
70912934 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70912955 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 109 0.68
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:70912874 original size:83 final size:80
Alignment explanation
Indices: 70912735--70912954 Score: 300
Period size: 83 Copynumber: 2.7 Consensus size: 80
70912725 CGGATGATAT
* **
70912735 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTCA
70912800 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
70912818 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCTGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTCA
*
70912883 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
70912898 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCT-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCCCGAAG
70912955 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 16 0.13
80 46 0.37
83 63 0.50
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:70916889 original size:39 final size:40
Alignment explanation
Indices: 70916844--70917010 Score: 97
Period size: 39 Copynumber: 4.2 Consensus size: 40
70916834 CGGGGTTTAG
* * *
70916844 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
70916883 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * * **
70916923 CCGGATAT-AGTGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
70916962 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
70917003 CCGGATAT
1 CCGGATAT
70917011 CATTCGAGTA
Statistics
Matches: 102, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
38 3 0.03
39 43 0.42
40 26 0.25
41 27 0.26
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:70916992 original size:41 final size:39
Alignment explanation
Indices: 70916867--70917010 Score: 173
Period size: 39 Copynumber: 3.6 Consensus size: 39
70916857 CTCGCACAAG
* * * * *
70916867 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGT-GCTAGCACAAAT
70916907 GCCTTCGGGACTTAGCCCGGATATAGTGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTGCTAGCACAAAT
* * *
70916946 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGT-GC-TAGCACAAAT
70916987 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
70917011 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 26 0.29
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATATAGTGCTAGCACAAAT
Found at i:70918243 original size:38 final size:38
Alignment explanation
Indices: 70918201--70918276 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
70918191 CAAGAACTCC
70918201 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
70918239 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
70918277 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:70927830 original size:43 final size:43
Alignment explanation
Indices: 70927763--70927886 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
70927753 TTTGAACTCA
* **
70927763 TTCACCGGCATT-TCGCCTGCTAGGCTTAAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGATATCAT
* * *
70927805 TTCACAGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGATATCAT
* * * *
70927848 CTCACCGGCATTATAGCCTACTACGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGATA
70927887 ATATTATTCA
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 11 0.15
43 60 0.85
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGATATCAT
Found at i:70932888 original size:48 final size:48
Alignment explanation
Indices: 70932772--70932947 Score: 167
Period size: 48 Copynumber: 3.6 Consensus size: 48
70932762 GGTAAGATGC
* * * * * * *
70932772 CGATGCCATGTCCTAGACATGGTCTTACAATGGCTCTCATATATCTATG-
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGC-C-CACATATCAAGGT
* * * * *
70932821 CCATGACATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGG-
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGT
* * *
70932868 CTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAATGT
1 C-GATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGT
*
70932917 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
70932948 GGCTTACATG
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
47 9 0.09
48 68 0.65
49 28 0.27
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGT
Found at i:70939284 original size:46 final size:45
Alignment explanation
Indices: 70939228--70939403 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
70939218 TATTTGGGCA
70939228 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
70939274 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
70939321 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
70939367 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70939404 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:70939383 original size:93 final size:93
Alignment explanation
Indices: 70939224--70939395 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70939214 AGGATATTTG
* * *
70939224 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70939289 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
70939317 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70939382 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
70939396 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70946219 original size:10 final size:10
Alignment explanation
Indices: 70946204--70946232 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
70946194 TTAAACTCTA
70946204 AAAGATAAAT
1 AAAGATAAAT
70946214 AAAGATAAAT
1 AAAGATAAAT
70946224 AAAGATAAA
1 AAAGATAAA
70946233 AGCTGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:70948245 original size:26 final size:25
Alignment explanation
Indices: 70948183--70948256 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 25
70948173 TCGATTTTCC
70948183 TATATATAAGAAGAGAGAATAAAAATTA
1 TATATATAAGAA-A-A-AATAAAAATTA
*
70948211 T-TAACATAAGAAAAAATAGAAAATTA
1 TAT-ATATAAGAAAAAATA-AAAATTA
*
70948237 TATATATAA-ATAAAATAAAA
1 TATATATAAGAAAAAATAAAA
70948257 TAAACATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
24 3 0.08
25 11 0.28
26 14 0.35
27 3 0.08
28 9 0.22
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.26
Consensus pattern (25 bp):
TATATATAAGAAAAAATAAAAATTA
Found at i:70956510 original size:33 final size:33
Alignment explanation
Indices: 70956473--70956539 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
70956463 CATTTTGCAC
70956473 CATAAATCTTTCTTTCCTTTTCTCCAAATGATT
1 CATAAATCTTTCTTTCCTTTTCTCCAAATGATT
70956506 CATAAATCTTTCTTTCCTTTTCTCCAAATGATT
1 CATAAATCTTTCTTTCCTTTTCTCCAAATGATT
70956539 C
1 C
70956540 GTGTCTGTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.25, G:0.03, T:0.48
Consensus pattern (33 bp):
CATAAATCTTTCTTTCCTTTTCTCCAAATGATT
Found at i:70957225 original size:7 final size:7
Alignment explanation
Indices: 70957213--70957238 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
70957203 CAAGCATAGG
70957213 TCAATGT
1 TCAATGT
70957220 TCAATGT
1 TCAATGT
70957227 TCAATGT
1 TCAATGT
70957234 TCAAT
1 TCAAT
70957239 TTATAGATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (7 bp):
TCAATGT
Found at i:70960202 original size:45 final size:45
Alignment explanation
Indices: 70960138--70960228 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
70960128 TATGGTTCTC
*
70960138 TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTTAAATGT
1 TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTCAAATGT
* * *
70960183 TTTTCTAAATTTCAAATGTTGATAAAATTAAATATCCTCAAATGT
1 TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTCAAATGT
70960228 T
1 T
70960229 GAGAAAGATG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (45 bp):
TTTTCTAAATTTAAAATGTTGAGAAAAATAAATATCCTCAAATGT
Found at i:70962861 original size:37 final size:37
Alignment explanation
Indices: 70962769--70962904 Score: 222
Period size: 36 Copynumber: 3.7 Consensus size: 37
70962759 GCTCATACGA
* * *
70962769 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
70962806 AATCT-CACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
70962842 AATCTCCACACGTAGTCATC-GGTCTTACTCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
70962878 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
70962905 TAGAGCTCGG
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
36 68 0.73
37 25 0.27
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:70962863 original size:73 final size:73
Alignment explanation
Indices: 70962769--70962904 Score: 220
Period size: 73 Copynumber: 1.9 Consensus size: 73
70962759 GCTCATACGA
*
70962769 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCT-CACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATC-GGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
70962833 CCCGGACAT
65 CCCGGACAT
* * *
70962842 AATCTCCACACGTAGTCATCGGTCTTACTCGGACATAATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGAAGTCATCGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
70962905 TAGAGCTCGG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 19 0.33
73 39 0.67
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (73 bp):
AATCTCCACACGAAGTCATCGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTAC
CCGGACAT
Found at i:70963101 original size:47 final size:47
Alignment explanation
Indices: 70963023--70963476 Score: 755
Period size: 47 Copynumber: 9.6 Consensus size: 47
70963013 CCCTTCGGGA
* * * * * *
70963023 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70963070 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70963117 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70963164 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70963211 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70963260 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70963309 CTTATCACATATACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70963356 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70963403 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70963450 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
70963477 TATTCAAATA
Statistics
Matches: 385, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 291 0.76
49 94 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70963453 original size:239 final size:235
Alignment explanation
Indices: 70963023--70963476 Score: 800
Period size: 239 Copynumber: 1.9 Consensus size: 235
70963013 CCCTTCGGGA
* * *
70963023 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATACACAC
70963088 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
70963153 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
70963218 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 C--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70963260 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATACAC
*
70963325 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
70963390 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
70963455 CACATATATACACTTTCACATT
194 CACATATATACACTTTCACATT
70963477 TATTCAAATA
Statistics
Matches: 207, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
237 29 0.14
238 1 0.00
239 177 0.86
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (235 bp):
CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATACACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70970333 original size:27 final size:27
Alignment explanation
Indices: 70970302--70970479 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70970292 TAAATTGTAC
70970302 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70970329 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70970355 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70970383 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70970411 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70970438 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70970465 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70970480 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70970416 original size:82 final size:81
Alignment explanation
Indices: 70970303--70970458 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70970293 AAATTGTACA
* *
70970303 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70970367 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70970384 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70970449 TGCGAGTTGA
65 TGCGAATTGA
70970459 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70970470 original size:82 final size:81
Alignment explanation
Indices: 70970299--70970479 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70970289 GATTAAATTG
* *
70970299 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70970364 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70970380 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70970444 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70970462 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70970480 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70978522 original size:27 final size:27
Alignment explanation
Indices: 70978491--70978668 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70978481 TAAATTGTAC
70978491 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70978518 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70978544 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70978572 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70978600 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70978627 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70978654 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70978669 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70978605 original size:82 final size:81
Alignment explanation
Indices: 70978492--70978647 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70978482 AAATTGTACA
* *
70978492 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70978556 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70978573 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70978638 TGCGAGTTGA
65 TGCGAATTGA
70978648 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70978659 original size:82 final size:81
Alignment explanation
Indices: 70978488--70978668 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70978478 GATTAAATTG
* *
70978488 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70978553 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70978569 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70978633 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70978651 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70978669 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70987315 original size:30 final size:30
Alignment explanation
Indices: 70987251--70987316 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
70987241 GGGCTAACCG
*
70987251 TGTGTCACACACGGCCTAGACACACGCCCG
1 TGTGTCACACACGGCCTAGACACACGCCCA
* * *
70987281 TGTGTCACACACGGCCTAGACGCATGCTCA
1 TGTGTCACACACGGCCTAGACACACGCCCA
70987311 TGTGTC
1 TGTGTC
70987317 TACCCATGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.21, C:0.35, G:0.24, T:0.20
Consensus pattern (30 bp):
TGTGTCACACACGGCCTAGACACACGCCCA
Found at i:71005757 original size:41 final size:40
Alignment explanation
Indices: 71005631--71005774 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
71005621 CTCGCACAAG
* * * * *
71005631 GCCTTC-GGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
71005670 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
71005710 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
71005751 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
71005775 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 9 0.10
40 52 0.57
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:71007007 original size:30 final size:31
Alignment explanation
Indices: 71006968--71007028 Score: 115
Period size: 30 Copynumber: 2.0 Consensus size: 31
71006958 TCCTTCCTCC
71006968 TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
71006999 TTCC-TAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
71007029 AAAGGATGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (31 bp):
TTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:71013699 original size:39 final size:40
Alignment explanation
Indices: 71013654--71013821 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
71013644 CGGGGTTTAG
* * *
71013654 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
71013693 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
71013733 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
71013773 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
71013814 CCGGATAT
1 CCGGATAT
71013822 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:71013804 original size:41 final size:40
Alignment explanation
Indices: 71013677--71013821 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
71013667 CTCGCACAAG
* * * * *
71013677 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
71013717 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
71013757 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
71013798 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
71013822 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:71015052 original size:38 final size:38
Alignment explanation
Indices: 71015010--71015085 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
71015000 CAAGAACTCC
71015010 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
71015048 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
71015086 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:71024794 original size:48 final size:46
Alignment explanation
Indices: 71024731--71024852 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 46
71024721 TGGCCATTGT
* ***
71024731 AAGACATGTTAGGGACATGCATCGGCCTCGAGATATTTAAGCCAGTGC
1 AAGACATGTTTGGGACATGCATCGGCCTCGAG--ACGGAAGCCAGTGC
* * * * * *
71024779 AAGACATGTTTGGGACATGTATCGGCATTGAGACGGGAGCTAGTGT
1 AAGACATGTTTGGGACATGCATCGGCCTCGAGACGGAAGCCAGTGC
*
71024825 AAGACATGTTTGGGATATGCATCGGCCT
1 AAGACATGTTTGGGACATGCATCGGCCT
71024853 TGCGATATAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
46 33 0.54
48 28 0.46
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
AAGACATGTTTGGGACATGCATCGGCCTCGAGACGGAAGCCAGTGC
Found at i:71025016 original size:49 final size:49
Alignment explanation
Indices: 71024912--71025033 Score: 140
Period size: 49 Copynumber: 2.5 Consensus size: 49
71024902 GTGGTGTTTT
* * * * *
71024912 AGTGTAAGACCTGTTTGGGACATGGCATCGTCACCGATCGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATAGCATCGACACCGATAGATGAAAGCC
* *
71024961 AGTGTAAGACCTGTCTGGGACATAGCATCGAC-CTCGCTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATAGCATCGACAC-CGATAGATGAAAGCC
71025010 TA-TGTAAGACCATGTCTGGGACAT
1 -AGTGTAAGACC-TGTCTGGGACAT
71025034 GGCGTCAACA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
48 1 0.02
49 49 0.78
50 13 0.21
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATAGCATCGACACCGATAGATGAAAGCC
Found at i:71032683 original size:46 final size:46
Alignment explanation
Indices: 71032515--71032685 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
71032505 TATGTGTGCT
* *
71032515 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--CA-ACATGATGGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATTGAGACATGA--GCC
* * *
71032561 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACA--TGAGCC
* * * * ** *
71032609 AGTGCAAAACTTGTCTGGGACATACATCGGCATTGAGACGGGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATGAGCC
71032655 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
71032686 CTTGCAATAT
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 58 0.57
47 1 0.01
48 38 0.38
50 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACATGAGCC
Found at i:71033973 original size:21 final size:21
Alignment explanation
Indices: 71033947--71034007 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
71033937 GTTATAATGA
71033947 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
71033968 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
71033989 CCACACGGGAGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
71034008 ATTTCAAGAG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
20 6 0.15
21 33 0.85
ACGTcount: A:0.11, C:0.38, G:0.30, T:0.21
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:71037292 original size:38 final size:38
Alignment explanation
Indices: 71037241--71037316 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
71037231 AAGTTAGTTC
*
71037241 ACAATTTCTTACTTCTTTAAAACATTTTCTATGGCATT
1 ACAATTTCTTACTTCTTTAAAACATTTCCTATGGCATT
*
71037279 ACAATTTCTTACTTCTTTAAAACATTTCCTGTGGCATT
1 ACAATTTCTTACTTCTTTAAAACATTTCCTATGGCATT
71037317 CTAATTGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.46
Consensus pattern (38 bp):
ACAATTTCTTACTTCTTTAAAACATTTCCTATGGCATT
Found at i:71037667 original size:16 final size:16
Alignment explanation
Indices: 71037646--71037682 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
71037636 TTTCTATGAG
71037646 TCATTATTACTTTGCA
1 TCATTATTACTTTGCA
71037662 TCATTATTACTTTGCA
1 TCATTATTACTTTGCA
71037678 TCATT
1 TCATT
71037683 TACTTCAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.05, T:0.51
Consensus pattern (16 bp):
TCATTATTACTTTGCA
Found at i:71038648 original size:24 final size:24
Alignment explanation
Indices: 71038621--71038668 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
71038611 TATGCATTTG
71038621 CCTAGACTCACATTTTGTGAGGTT
1 CCTAGACTCACATTTTGTGAGGTT
71038645 CCTAGACTCACATTTTGTGAGGTT
1 CCTAGACTCACATTTTGTGAGGTT
71038669 TGCCCGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (24 bp):
CCTAGACTCACATTTTGTGAGGTT
Found at i:71043062 original size:26 final size:26
Alignment explanation
Indices: 71043024--71043087 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
71043014 TTTACATTGT
* *
71043024 TGCTCACACGAGTTGTGAAATGGATC
1 TGCTCACATGAGTTGTGAAATGGACC
*
71043050 TGCTCACATGAGTTGTGAAATGGGCC
1 TGCTCACATGAGTTGTGAAATGGACC
71043076 TGCTCACATGAG
1 TGCTCACATGAG
71043088 AAGTGGGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
TGCTCACATGAGTTGTGAAATGGACC
Found at i:71049943 original size:8 final size:8
Alignment explanation
Indices: 71049930--71049999 Score: 61
Period size: 8 Copynumber: 8.1 Consensus size: 8
71049920 GATTGTTTTT
71049930 TATAAAAA
1 TATAAAAA
71049938 TATAAAAA
1 TATAAAAA
*
71049946 TTTTAAAAA
1 -TATAAAAA
71049955 TA-AAAAA
1 TATAAAAA
*
71049962 AACTAAAAAA
1 TA-T-AAAAA
71049972 TATTTTAAAAA
1 TA---TAAAAA
71049983 TATAAAAA
1 TATAAAAA
71049991 TATAAAAA
1 TATAAAAA
71049999 T
1 T
71050000 TTTAAAAAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
7 6 0.12
8 24 0.47
9 7 0.14
10 6 0.12
11 7 0.14
12 1 0.02
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (8 bp):
TATAAAAA
Found at i:71050027 original size:27 final size:25
Alignment explanation
Indices: 71049931--71050027 Score: 113
Period size: 27 Copynumber: 3.7 Consensus size: 25
71049921 ATTGTTTTTT
71049931 ATAAAAATATAAAAATTTTAAAAATA
1 ATAAAAATATAAAAATTTTAAAAA-A
* * *
71049957 AAAAAAACTAAAAAATATTTTAAAAAT
1 ATAAAAA-TATAAAA-ATTTTAAAAAA
71049984 ATAAAAATATAAAAATTTTAAAAAA
1 ATAAAAATATAAAAATTTTAAAAAA
*
71050009 GATATAAAATATAGAAATT
1 -ATA-AAAATATAAAAATT
71050028 AATATATAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
25 10 0.17
26 15 0.25
27 25 0.42
28 10 0.17
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.29
Consensus pattern (25 bp):
ATAAAAATATAAAAATTTTAAAAAA
Found at i:71050811 original size:5 final size:5
Alignment explanation
Indices: 71050801--71050841 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
71050791 TATTTTATGA
71050801 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG A
1 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG A
71050842 GTGAAGATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20
Consensus pattern (5 bp):
ATAGG
Found at i:71054007 original size:20 final size:20
Alignment explanation
Indices: 71053984--71054021 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
71053974 TTAAATCTAA
71053984 TTAATGTA-GTTTAATCAAAC
1 TTAATGTATG-TTAATCAAAC
*
71054004 TTAATTTATGTTAATCAA
1 TTAATGTATGTTAATCAA
71054022 GCTATTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 15 0.94
21 1 0.06
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (20 bp):
TTAATGTATGTTAATCAAAC
Found at i:71055427 original size:15 final size:14
Alignment explanation
Indices: 71055394--71055438 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
71055384 AACTCTTTCA
*
71055394 AAATGAAAATAATAA
1 AAATGAAAATAA-AT
71055409 AAATGAAAATTAAAT
1 AAATGAAAA-TAAAT
71055424 AAAT-AAAATAAAT
1 AAATGAAAATAAAT
71055437 AA
1 AA
71055439 GACCTTAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 7 0.25
14 4 0.14
15 14 0.50
16 3 0.11
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.22
Consensus pattern (14 bp):
AAATGAAAATAAAT
Found at i:71055611 original size:10 final size:10
Alignment explanation
Indices: 71055554--71055617 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
71055544 GGGGAATGTG
*
71055554 TAAAAAAAAA
1 TAAATAAAAA
* *
71055564 TATATATAAA
1 TAAATAAAAA
*
71055574 TAGACATGAAAA
1 TA-A-ATAAAAA
71055586 TAAATAAAAA
1 TAAATAAAAA
*
71055596 TGAAATAAGAA
1 T-AAATAAAAA
71055607 TAAATAAAAA
1 TAAATAAAAA
71055617 T
1 T
71055618 TATACAAGTG
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
10 25 0.60
11 10 0.24
12 7 0.17
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:71055669 original size:24 final size:25
Alignment explanation
Indices: 71055641--71055687 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
71055631 ATAAATATAA
71055641 AACATTAAA-ATA-AATGGTATAATT
1 AACATTAAATATATAAT-GTATAATT
71055665 AACATTAAATATATAATGTATAA
1 AACATTAAATATATAATGTATAA
71055688 ATGCAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.43
25 9 0.43
26 3 0.14
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AACATTAAATATATAATGTATAATT
Found at i:71056663 original size:5 final size:5
Alignment explanation
Indices: 71056653--71056683 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
71056643 AAAAAAGTAG
71056653 AAGAA AAGAA AAGAA AAGAA AAGAA ATAGAA
1 AAGAA AAGAA AAGAA AAGAA AAGAA A-AGAA
71056684 TGCTTCTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.84
6 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (5 bp):
AAGAA
Found at i:71057416 original size:21 final size:22
Alignment explanation
Indices: 71057392--71057437 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
71057382 AAAAAAGTCA
** *
71057392 AAACTTTGTTTTAAAA-AATTT
1 AAACTTTCCTTTAAAATAACTT
71057413 AAACTTTCCTTTAAAATAACTT
1 AAACTTTCCTTTAAAATAACTT
71057435 AAA
1 AAA
71057438 AAAAGATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (22 bp):
AAACTTTCCTTTAAAATAACTT
Found at i:71057487 original size:151 final size:149
Alignment explanation
Indices: 71057324--71057793 Score: 499
Period size: 150 Copynumber: 3.1 Consensus size: 149
71057314 ATTAAAGTTT
* * * * * *
71057324 TCTTTAGAAAAAATCATTACTTTTCTTAAAAATCAAAAC-CTTATTTCGAATTAGTTAAAAAAAA
1 TCTTTAAAAAAAATCATTATTTTTCTTAAAAATTAAAGCTTTTATTT-GAAATAGTTAAAAAAAA
71057388 GTCAAAACTTTGTTTTAAAAAATTTAAACTTTCCTTTAAAATAACTTAAAAAAAGATATTTTTAT
65 -TCAAAACTTTGTTTT--AAAATTTAAACTTTCCTTTAAAATAACTTAAAAAAAGATATTTTTAT
71057453 TTTTCAAAATCTAAACTTTCTCC
127 TTTTCAAAATCTAAACTTTCTCC
*
71057476 -CTTTAAAAAAAAT-ATTATTTTTCTTAAAAATTGAAGCTTTTATTTTGAAATAGTTAAAAAAAA
1 TCTTTAAAAAAAATCATTATTTTTCTTAAAAATTAAAGCTTTTA-TTTGAAATAGTTAAAAAAAA
* * * *
71057539 TAAAAAATTTTGTTTTAAAATTTGAAACTTTCCTTTAAAATGAC-TAGAAAAAACATATTTTTAT
65 T-CAAAACTTTGTTTTAAAATTT-AAACTTTCCTTTAAAATAACTTA-AAAAAAGATATTTTTAT
*
71057603 TTTTCAAAATCCAAACTTTCTCC
127 TTTTCAAAATCTAAACTTTCTCC
* * * * *
71057626 TTTTTTTTAAAAAAAAAACACTATTTTTCTTGAAGATTAAAGCTTTTACTTTGAAATAGTTGAAG
1 ---TCTTT-AAAAAAAATCATTATTTTTCTTAAAAATTAAAGCTTTTA-TTTGAAATAGTT----
* * *
71057691 AAAAAAAATCAAAACTTTGTTTTAAAATTTTAATTTTCCCTTTAAAATTA-TTAAAAAAAG--AT
57 AAAAAAAATCAAAACTTTGTTTTAAAATTTAAACTTT-CCTTTAAAATAACTTAAAAAAAGATAT
* *
71057753 TTTTA--TGTCAAAATCTAAACTTTCTCTT
121 TTTTATTTTTCAAAATCTAAACTTTCTC-C
*
71057781 TTTTTAAAAAAAA
1 TCTTTAAAAAAAA
71057794 AATCAAAACT
Statistics
Matches: 272, Mismatches: 28, Indels: 37
0.81 0.08 0.11
Matches are distributed among these distances:
149 9 0.03
150 78 0.29
151 51 0.19
152 8 0.03
154 22 0.08
155 8 0.03
156 44 0.16
158 11 0.04
159 32 0.12
160 9 0.03
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (149 bp):
TCTTTAAAAAAAATCATTATTTTTCTTAAAAATTAAAGCTTTTATTTGAAATAGTTAAAAAAAAT
CAAAACTTTGTTTTAAAATTTAAACTTTCCTTTAAAATAACTTAAAAAAAGATATTTTTATTTTT
CAAAATCTAAACTTTCTCC
Found at i:71057832 original size:19 final size:20
Alignment explanation
Indices: 71057810--71057853 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
71057800 AACTTTTCCC
71057810 AAAATCAAACCTTT-TTTTA
1 AAAATCAAACCTTTATTTTA
**
71057829 AAAAAGAAACCTTTATTTTA
1 AAAATCAAACCTTTATTTTA
*
71057849 GAAAT
1 AAAAT
71057854 GGGAGGGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAATCAAACCTTTATTTTA
Found at i:71073193 original size:47 final size:47
Alignment explanation
Indices: 71073104--71073197 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 47
71073094 GAGCATAACT
* *
71073104 GTAAATGTGACTGGGCCTAATGGCCGTATGAATATGATTTGGGCCTA
1 GTAAATGTGACTGGGCCTAATGGCCATATGAAGATGATTTGGGCCTA
*
71073151 GTAAATGTGATTGGGCCTAATGGGCCATATGGAAGA-GA-TTGGGCCTA
1 GTAAATGTGACTGGGCCTAAT-GGCCATAT-GAAGATGATTTGGGCCTA
71073198 ATGGGCTATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 29 0.69
48 9 0.21
49 4 0.10
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.28
Consensus pattern (47 bp):
GTAAATGTGACTGGGCCTAATGGCCATATGAAGATGATTTGGGCCTA
Found at i:71076174 original size:14 final size:14
Alignment explanation
Indices: 71076140--71076174 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
71076130 CTCTCTGGGC
71076140 TTTATGGTTTTTAG
1 TTTATGGTTTTTAG
* *
71076154 TTGATGGTTTTTGG
1 TTTATGGTTTTTAG
71076168 TTTATGG
1 TTTATGG
71076175 ATAATTTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.29, T:0.60
Consensus pattern (14 bp):
TTTATGGTTTTTAG
Found at i:71084475 original size:43 final size:43
Alignment explanation
Indices: 71084222--71084468 Score: 413
Period size: 43 Copynumber: 5.7 Consensus size: 43
71084212 ACATATCATT
* *
71084222 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
71084265 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
71084308 TTACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
71084351 TCACCGGAACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
71084394 TCACTGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
71084437 TTACCGGCACTAAGCCTGCTAGGCATGAAGGC
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGC
71084469 TTGAATATAA
Statistics
Matches: 192, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 192 1.00
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.13
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:71087652 original size:29 final size:27
Alignment explanation
Indices: 71087616--71087685 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 27
71087606 TATTAAATAA
* *
71087616 TTTT-TTTTATTTTTAATCATATTTACTT
1 TTTTATTTTATTTTTAAT-ATAATCAC-T
*
71087644 TTTTATTTTCAATTTTAATATAATCACT
1 TTTTATTTT-ATTTTTAATATAATCACT
*
71087672 TTTTATTATATTTT
1 TTTTATTTTATTTT
71087686 CAATTTGTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
27 4 0.11
28 13 0.37
29 10 0.29
30 8 0.23
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTATTTTATTTTTAATATAATCACT
Found at i:71087754 original size:12 final size:12
Alignment explanation
Indices: 71087737--71087762 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71087727 TATTTGTTTC
71087737 TTGTTTTAATAT
1 TTGTTTTAATAT
71087749 TTGTTTTAATAT
1 TTGTTTTAATAT
71087761 TT
1 TT
71087763 TTAAATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:71088363 original size:42 final size:42
Alignment explanation
Indices: 71088304--71088489 Score: 237
Period size: 42 Copynumber: 4.4 Consensus size: 42
71088294 ACAGGACCTC
* * * * *
71088304 GTCTCTAAATGCAATGAAAAGTGAAAGGACCTCTACACCCGA
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
* * *
71088346 GTCTCTAGATGCAATGAAAAGTGAATGGACCTCCACTCCTGG
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
*
71088388 GTCTCCAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
* * ** *
71088430 GTCTCCAAATGTAATGAAAAGTGAATGGACCCCCACACAAGC
1 GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
*
71088472 GTCTCTAGATGTAATGAA
1 GTCTCTAAATGTAATGAA
71088490 TGTTTTCCTT
Statistics
Matches: 128, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 128 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (42 bp):
GTCTCTAAATGTAATGAAAAGTGAATGGACCTCCACACCTGG
Found at i:71090904 original size:17 final size:19
Alignment explanation
Indices: 71090807--71090897 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
71090797 ATAATCTTCA
*
71090807 ATGATATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71090826 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71090845 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71090862 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71090880 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
71090898 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:71091185 original size:17 final size:17
Alignment explanation
Indices: 71091161--71091195 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71091151 TGTTTCCTTG
*
71091161 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
71091179 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
71091196 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:71099380 original size:89 final size:87
Alignment explanation
Indices: 71099251--71099412 Score: 191
Period size: 89 Copynumber: 1.8 Consensus size: 87
71099241 ATTCGACGGA
* * *
71099251 GAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGATGTAGATCCAAGATG
1 GAGCAGATCAAAGACATAGCAGATCTAACCTTCCGATG-TTT-ACATCGAAGGAGATCCAAGATG
71099316 ATTTGGCATCCTTATGATGACAAG
64 ATTTGGCATCCTTATGATGACAAG
* * ** * * * *
71099340 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGTTGAAGGAGATCTAAGATGA
1 GAGCAGATCAAAGACATAGCAGATCTAACCTTC-CGATGTTTACATCGAAGGAGATCCAAGATGA
71099404 TTTGGCATC
65 TTTGGCATC
71099413 TCTGTACTGT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
87 27 0.44
88 3 0.05
89 30 0.49
90 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (87 bp):
GAGCAGATCAAAGACATAGCAGATCTAACCTTCCGATGTTTACATCGAAGGAGATCCAAGATGAT
TTGGCATCCTTATGATGACAAG
Found at i:71099574 original size:78 final size:78
Alignment explanation
Indices: 71099445--71099738 Score: 419
Period size: 78 Copynumber: 3.8 Consensus size: 78
71099435 CAAAGAAATA
* ** * * * *
71099445 GATTTTGCATCTCCATATTCGACGGAGAGTAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
71099510 GCAGATCTAAGAT
66 GCAGATCCAAGAT
*
71099523 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
*
71099588 GTAGATCCAAGAT
66 GCAGATCCAAGAT
* *
71099601 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACATAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
*
71099665 AGCAGATCGAAGAT
65 AGCAGATCCAAGAT
** * *
71099679 GATTTGGCATCTCTGTATTAGACGGGGAATAGATCGAAGACATAGCAGATCTGAACTTCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCA
71099739 AATGTTTACA
Statistics
Matches: 193, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 191 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:71099834 original size:45 final size:45
Alignment explanation
Indices: 71099762--71099907 Score: 179
Period size: 45 Copynumber: 3.3 Consensus size: 45
71099752 GAGTAGATCC
* *
71099762 AAGATGAG-AGATTTGACATCTATGTATTAGACGGGGAGCAAATCG
1 AAGAT-AGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * * * *
71099807 GAGATAACAGATTTGGCATCTCTGTATTAGACGCGGACCAAATTG
1 AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * *
71099852 AAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
71099896 AAGATAGCAGAT
1 AAGATAGCAGAT
71099908 ATCGCCTTCC
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
44 38 0.45
45 46 0.55
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.25
Consensus pattern (45 bp):
AAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
Found at i:71108343 original size:37 final size:37
Alignment explanation
Indices: 71108293--71108371 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
71108283 TTATTACGAA
* * *
71108293 GTCTTACCCGGACATAA-TCTCCACAGGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
71108330 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
71108367 GTCTT
1 GTCTT
71108372 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:71108559 original size:47 final size:47
Alignment explanation
Indices: 71108490--71108836 Score: 624
Period size: 47 Copynumber: 7.4 Consensus size: 47
71108480 CCCTTCGGGA
*
71108490 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71108537 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71108584 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71108631 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71108678 CTTATCACACGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71108725 CTTATCACACGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71108772 CTTATCACACATATAGACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71108818 CTTATCACATATATACACT
1 CTTATCACACATATACACT
71108837 GTCTTGGCTG
Statistics
Matches: 292, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
46 17 0.06
47 275 0.94
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71112450 original size:40 final size:40
Alignment explanation
Indices: 71112307--71112529 Score: 195
Period size: 40 Copynumber: 5.6 Consensus size: 40
71112297 CCAGCATGAT
* *
71112307 TGCTCTTCGGGACCTAGCCCGG--ACATAACTCCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT--AGCACGAA
** ** *
71112347 TGCTCTTCGGGGTTTAGCATGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
71112387 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
71112427 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * **
71112468 TGC-CTTCGGGTCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATA-CATCAC-TAGCACGAA
*
71112508 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
71112530 CATCATTCGA
Statistics
Matches: 147, Mismatches: 31, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
40 124 0.84
41 17 0.12
42 6 0.04
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:71112475 original size:120 final size:119
Alignment explanation
Indices: 71112294--71112529 Score: 268
Period size: 120 Copynumber: 2.0 Consensus size: 119
71112284 CGAATACACG
* *
71112294 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACTCCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACT-CAGCACCAATGCTCTTC-GGG
* *
71112359 T-TTAG-CATGGATAT-ATCAC-TAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
64 TCTTAGTC-CGGATATGATCACTTAGCAC-AAAGC-CTTCGGAACTTAGCCCGGATACA
* * * *
71112414 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACT-TGCACCAATGC-CTTCGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGA--CA-TAACTCAGCACCAATGCTCTTCGG
* *
71112477 GTCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 GTCTTAGTCCGGATATGATCACTTAGCACAAAGCCTTCGGAACTTAGCCCGGA
71112530 CATCATTCGA
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
119 4 0.04
120 65 0.66
121 18 0.18
122 7 0.07
123 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (119 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACTCAGCACCAATGCTCTTCGGGTC
TTAGTCCGGATATGATCACTTAGCACAAAGCCTTCGGAACTTAGCCCGGATACA
Found at i:71112873 original size:29 final size:29
Alignment explanation
Indices: 71112834--71112912 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
71112824 CTTAATAATC
*
71112834 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
71112864 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
71112893 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
71112913 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:71114865 original size:36 final size:36
Alignment explanation
Indices: 71114818--71114894 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
71114808 TTATTACGAA
* *
71114818 GTCTTACCCGGACATAATCTCCACA-GAAGTTATCGG
1 GTCTTACCCGGACAAAATC-CCACACGAAGTCATCGG
*
71114854 GTCTTACCCGGACAAAATCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCACACGAAGTCATCGG
71114890 GTCTT
1 GTCTT
71114895 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 5 0.14
36 32 0.86
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCACACGAAGTCATCGG
Found at i:71115082 original size:47 final size:47
Alignment explanation
Indices: 71115013--71115286 Score: 521
Period size: 47 Copynumber: 5.8 Consensus size: 47
71115003 CCCTTCGGGA
*
71115013 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71115060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71115107 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71115154 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71115201 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71115248 CTTATCACACATATACACTTTCACATTCATCACATCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGC
71115287 GGTTTAATCA
Statistics
Matches: 226, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 226 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71118695 original size:45 final size:45
Alignment explanation
Indices: 71118489--71118740 Score: 147
Period size: 46 Copynumber: 5.3 Consensus size: 45
71118479 GGTATGATGT
* *
71118489 CGATGCCATGTCCCAGACATGGTCTTCCACTGGCT-CATTCATC-AAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTACA-TC-TCGAAGC
* * * ** *
71118536 CGATGCCCTGTCCCAAATATGGTCTTACACTGACTATCAAAATCGAGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTA-C-ATCTCGAAGC
* * * * *
71118585 CGACGCCATGTCCCAGACATGGT-TATACATTAGCTCTCACATATCCG-TGC
1 CGATG-CATGTCCCAGACAT-GTCT-TACACT-G-ACT-ACATCT-CGAAGC
*
71118635 TGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTC-ATAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTACATCTCGA-AGC
* *
71118681 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGAC-TACATCTCGAAGC
71118727 CGATGCATGTCCCA
1 CGATGCATGTCCCA
71118741 AAATTCTCAT
Statistics
Matches: 165, Mismatches: 25, Indels: 31
0.75 0.11 0.14
Matches are distributed among these distances:
44 12 0.07
45 15 0.09
46 34 0.21
47 31 0.19
48 4 0.02
49 29 0.18
50 33 0.20
51 6 0.04
52 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTACATCTCGAAGC
Found at i:71125599 original size:45 final size:46
Alignment explanation
Indices: 71125516--71125732 Score: 142
Period size: 46 Copynumber: 4.7 Consensus size: 46
71125506 CTATACGTTT
* * *
71125516 CGATGCCATGTCCCAGACATGGTCTTACATTGAC--ACATCTCGTA-GC
1 CGATG-CATGTCCCAG--ATTGTCTTACACTGGCTTACATCTCGTAGGC
*
71125562 CGATGCATGTCCCAGATTGTCTTACACTGGCTTACATCTTG-AGGC
1 CGATGCATGTCCCAGATTGTCTTACACTGGCTTACATCTCGTAGGC
* * * * * * *
71125607 CGATGCATGTCCCAGACATGTGTTACACTAGCTTTCGTCTC-AATGC
1 CGATGCATGTCCCAGA-TTGTCTTACACTGGCTTACATCTCGTAGGC
* * * * *
71125653 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATAAT-GT-GGC
1 CGATG-CATGTCCCAG--ATTGTCTTACACTGGCTTACAT-CTCGTAGGC
* *
71125701 CGATGCTTGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGA-TTGTCTTACACTGGC
71125733 ACACAAATAA
Statistics
Matches: 136, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
43 13 0.10
44 1 0.01
45 36 0.26
46 43 0.32
47 17 0.12
48 24 0.18
49 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGATTGTCTTACACTGGCTTACATCTCGTAGGC
Done.