Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 215 of 332
Found at i:71486170 original size:21 final size:21
Alignment explanation
Indices: 71486118--71486163 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
71486108 GATAAATAAC
*
71486118 ATTAAATTACTTAAAATGACT
1 ATTAAATTACTTAAAATGACA
71486139 ATTAAATTACTTAAAATGACA
1 ATTAAATTACTTAAAATGACA
71486160 ATTA
1 ATTA
71486164 TGTTACTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (21 bp):
ATTAAATTACTTAAAATGACA
Found at i:71489397 original size:17 final size:17
Alignment explanation
Indices: 71489375--71489431 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
71489365 GCCCATGTGG
71489375 CATGCCCGTGGCACCCA
1 CATGCCCGTGGCACCCA
*
71489392 CATGCCCGTGTG-----G
1 CATGCCCGTG-GCACCCA
71489405 CATGCCCGTGGCACCCA
1 CATGCCCGTGGCACCCA
71489422 CATGCCCGTG
1 CATGCCCGTG
71489432 TGGCATGCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
12 1 0.03
13 10 0.31
17 20 0.62
18 1 0.03
ACGTcount: A:0.14, C:0.42, G:0.28, T:0.16
Consensus pattern (17 bp):
CATGCCCGTGGCACCCA
Found at i:71489405 original size:30 final size:30
Alignment explanation
Indices: 71489327--71489458 Score: 156
Period size: 30 Copynumber: 4.4 Consensus size: 30
71489317 GATTTTTGGG
* * * **
71489327 CCCACATGCCAGTGTGGCTTGCCTGTGTGGG
1 CCCACATGCCCGTGTGGCATGCCCGTG-GCA
* * *
71489358 CCCATACGCCCATGTGGCATGCCCGTGGCA
1 CCCACATGCCCGTGTGGCATGCCCGTGGCA
71489388 CCCACATGCCCGTGTGGCATGCCCGTGGCA
1 CCCACATGCCCGTGTGGCATGCCCGTGGCA
* *
71489418 CCCACATGCCCGTGTGGCATGCCCGTAGCG
1 CCCACATGCCCGTGTGGCATGCCCGTGGCA
*
71489448 CCCACACGCCC
1 CCCACATGCCC
71489459 AATTCGGCCT
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
30 66 0.76
31 21 0.24
ACGTcount: A:0.14, C:0.40, G:0.29, T:0.17
Consensus pattern (30 bp):
CCCACATGCCCGTGTGGCATGCCCGTGGCA
Found at i:71489406 original size:19 final size:19
Alignment explanation
Indices: 71489382--71489436 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
71489372 TGGCATGCCC
71489382 GTGGCACCCACATGCCCGT
1 GTGGCACCCACATGCCCGT
71489401 GTGG------CATGCCC--
1 GTGGCACCCACATGCCCGT
71489412 GTGGCACCCACATGCCCGT
1 GTGGCACCCACATGCCCGT
71489431 GTGGCA
1 GTGGCA
71489437 TGCCCGTAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 4 0.14
13 7 0.25
17 7 0.25
19 10 0.36
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.16
Consensus pattern (19 bp):
GTGGCACCCACATGCCCGT
Found at i:71495482 original size:27 final size:27
Alignment explanation
Indices: 71495444--71495550 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 27
71495434 CACGAAGGTG
*
71495444 TTCC-TTTACATAAATCGCCACAAAGGC
1 TTCCATTT-CATAAATTGCCACAAAGGC
* * *
71495471 TTCCATTTCATAGATTGTCACAAAGAC
1 TTCCATTTCATAAATTGCCACAAAGGC
* *
71495498 TTCCATGTCA-AAGGTTGCCACAAAGGC
1 TTCCATTTCATAA-ATTGCCACAAAGGC
* * *
71495525 TTCAATTTCATAGATTGTCACAAAGG
1 TTCCATTTCATAAATTGCCACAAAGG
71495551 TTTTCACCAA
Statistics
Matches: 63, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
26 1 0.02
27 58 0.92
28 4 0.06
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (27 bp):
TTCCATTTCATAAATTGCCACAAAGGC
Found at i:71499186 original size:41 final size:41
Alignment explanation
Indices: 71499128--71499287 Score: 284
Period size: 41 Copynumber: 3.9 Consensus size: 41
71499118 ATTACATTTG
*
71499128 GCACTTAGTGTGAGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
* *
71499169 GCACTTAGTGTGCGAGATTATAATAGCTTTGGCTACGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
71499210 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
*
71499251 GCACTTAGTGTGTGAGATTATAATAGCTTCGGCTATG
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATG
71499288 CTTTGGCACT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 113 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
Found at i:71500354 original size:12 final size:12
Alignment explanation
Indices: 71500339--71500368 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
71500329 GGCACATGGG
71500339 CGTGTGGCCAAC
1 CGTGTGGCCAAC
71500351 CGTGTGGCCAAC
1 CGTGTGGCCAAC
71500363 CGTGTG
1 CGTGTG
71500369 ACCCAAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (12 bp):
CGTGTGGCCAAC
Found at i:71501319 original size:27 final size:27
Alignment explanation
Indices: 71501246--71501310 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
71501236 TTCTCTTAGT
* * * *
71501246 GTTCACCATACGTACTATTTCTTCAGA
1 GTTCACCATATGTAATATTCCTTCAAA
*
71501273 GTTCGCCATATGTAATATTCCTTCAAA
1 GTTCACCATATGTAATATTCCTTCAAA
71501300 GTTCACCATAT
1 GTTCACCATAT
71501311 TTATCATTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.37
Consensus pattern (27 bp):
GTTCACCATATGTAATATTCCTTCAAA
Found at i:71501519 original size:27 final size:27
Alignment explanation
Indices: 71501409--71501519 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 27
71501399 TGTTCCTTTC
* * *
71501409 CATAGATTGCCATAAAAGCTTTTATTT
1 CATAGATTGCCACAAAGGCTTCTATTT
* * * *
71501436 CAAAGATTTCCACAAAGACTTCTATGT
1 CATAGATTGCCACAAAGGCTTCTATTT
* * *
71501463 CATAAATTGCCACAAAGCCTTCCATTT
1 CATAGATTGCCACAAAGGCTTCTATTT
71501490 CATAGATTGCCACAAAGGCTTCTATTT
1 CATAGATTGCCACAAAGGCTTCTATTT
71501517 CAT
1 CAT
71501520 CGGCGTGCTC
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (27 bp):
CATAGATTGCCACAAAGGCTTCTATTT
Found at i:71503887 original size:66 final size:65
Alignment explanation
Indices: 71503710--71503888 Score: 187
Period size: 66 Copynumber: 2.7 Consensus size: 65
71503700 GTTCAGGAAC
* * * * * * *
71503710 TTGAGAAGACCAAATATCTCGTTTAGGGGCTTGGGAAGACTCAATATCTCATTTAAGATCTTGGG
1 TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAGA-TCGATATCGCATTCAAGAGCTTGAG
71503775 A
65 A
* * * * *
71503776 TTGAGAAGACATGATATCTCGTTTAGGAGCTTCGAAAGCCTCGATATCGCATTCAAGAGCTTGAG
1 TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAG-ATCGATATCGCATTCAAGAGCTTGAG
71503841 A
65 A
** * *
71503842 TTGAGAAGACCTAATATCTTATTCAGGATCTTGGGAAGATACGATAT
1 TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAGAT-CGATAT
71503889 TTGATTTTTT
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
65 1 0.01
66 89 0.99
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (65 bp):
TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAGATCGATATCGCATTCAAGAGCTTGAGA
Found at i:71506461 original size:42 final size:43
Alignment explanation
Indices: 71506371--71506488 Score: 132
Period size: 42 Copynumber: 2.8 Consensus size: 43
71506361 TATCGTATCA
* * * *
71506371 ATGCCATATCCCAGATATGGTCTTACATGAAAT-ATCATATCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCATCACACCG
* * * *
71506413 ACGCCATGTCCCTGACATGGTCTTATACGAAATCA-CACACCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATCATCACACCG
* *
71506455 ATGCCATATCCCAGATATAGTCTTATACGGAATC
1 ATGCCATATCCCAGATATGGTCTTATACGAAATC
71506489 TCAGTAGCTC
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAATCATCACACCG
Found at i:71516502 original size:16 final size:15
Alignment explanation
Indices: 71516481--71516511 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
71516471 GGAAAGCATA
71516481 TTATTGAATGCTTATT
1 TTATTGAATG-TTATT
71516497 TTATTGAATGTTATT
1 TTATTGAATGTTATT
71516512 GGTAAGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (15 bp):
TTATTGAATGTTATT
Found at i:71519595 original size:57 final size:56
Alignment explanation
Indices: 71519508--71519626 Score: 179
Period size: 57 Copynumber: 2.1 Consensus size: 56
71519498 AATAGAGAAT
*
71519508 ATGAAACATTTGGAAATGATTATGATTTTCTCCAAAATG-AAAATG-AAAATGTATAA
1 ATGAAACATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATG-A-AA
*
71519564 ATGAAACAATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
1 ATGAAAC-ATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
71519621 ATGAAA
1 ATGAAA
71519627 ATGACCTGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
56 7 0.12
57 38 0.66
58 7 0.12
59 6 0.10
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.29
Consensus pattern (56 bp):
ATGAAACATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
Found at i:71519610 original size:7 final size:7
Alignment explanation
Indices: 71519598--71519627 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
71519588 GATTTTCTCC
71519598 AAAATGA
1 AAAATGA
71519605 AAAATGA
1 AAAATGA
71519612 AAAATG-
1 AAAATGA
71519618 AAAATGA
1 AAAATGA
71519625 AAA
1 AAA
71519628 TGACCTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:71519621 original size:13 final size:14
Alignment explanation
Indices: 71519598--71519627 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
71519588 GATTTTCTCC
71519598 AAAATGAAAAATGA
1 AAAATGAAAAATGA
71519612 AAAATG-AAAATGA
1 AAAATGAAAAATGA
71519625 AAA
1 AAA
71519628 TGACCTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAATGA
Found at i:71520583 original size:16 final size:16
Alignment explanation
Indices: 71520562--71520592 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71520552 ACAAATGCAT
71520562 AAAAAGGACTAAATTG
1 AAAAAGGACTAAATTG
*
71520578 AAAAAGGAGTAAATT
1 AAAAAGGACTAAATT
71520593 AAGTGATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.19, T:0.19
Consensus pattern (16 bp):
AAAAAGGACTAAATTG
Found at i:71521717 original size:23 final size:23
Alignment explanation
Indices: 71521690--71521739 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
71521680 TATTTATTAT
71521690 TTACATACAACTTAGCTTTATGC
1 TTACATACAACTTAGCTTTATGC
71521713 TTACATACAACTTAGCTTTATGC
1 TTACATACAACTTAGCTTTATGC
71521736 TTAC
1 TTAC
71521740 CCCCTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (23 bp):
TTACATACAACTTAGCTTTATGC
Found at i:71528320 original size:51 final size:51
Alignment explanation
Indices: 71528239--71528341 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
71528229 TTGAAGCATG
* *
71528239 ATCTTTCCATTTCTAGCCATACTTTGAGCTAGGGTTCATGTTCAAAAACTT
1 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
71528290 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
1 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
71528341 A
1 A
71528342 ACCATGTGTG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (51 bp):
ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
Found at i:71528465 original size:17 final size:17
Alignment explanation
Indices: 71528443--71528476 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
71528433 AAAAATGCAT
71528443 AAAAAGGACTAAATTAA
1 AAAAAGGACTAAATTAA
*
71528460 AAAAAGGAGTAAATTAA
1 AAAAAGGACTAAATTAA
71528477 GTGATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.18
Consensus pattern (17 bp):
AAAAAGGACTAAATTAA
Found at i:71529598 original size:23 final size:23
Alignment explanation
Indices: 71529571--71529620 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
71529561 TATTTATTAT
71529571 TTACATACAACTTAGCTTTATGC
1 TTACATACAACTTAGCTTTATGC
71529594 TTACATACAACTTAGCTTTATGC
1 TTACATACAACTTAGCTTTATGC
71529617 TTAC
1 TTAC
71529621 CCCCTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (23 bp):
TTACATACAACTTAGCTTTATGC
Found at i:71530326 original size:23 final size:23
Alignment explanation
Indices: 71530296--71530384 Score: 74
Period size: 23 Copynumber: 3.9 Consensus size: 23
71530286 AGCTTATAGT
*
71530296 TTTCAGCTTATTAGAGCTTACCG
1 TTTCAGCTCATTAGAGCTTACCG
* * *
71530319 TTTCAGCTCGTAAGAGCTTACTG
1 TTTCAGCTCATTAGAGCTTACCG
* * *
71530342 -TTCAGCTTGA-TAAAACTTACCG
1 TTTCAGC-TCATTAGAGCTTACCG
* *
71530364 TTTCAACTCAATAGAGCTTAC
1 TTTCAGCTCATTAGAGCTTAC
71530385 TGTTCATTAG
Statistics
Matches: 49, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
22 16 0.33
23 33 0.67
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (23 bp):
TTTCAGCTCATTAGAGCTTACCG
Found at i:71543391 original size:46 final size:46
Alignment explanation
Indices: 71543207--71543473 Score: 177
Period size: 47 Copynumber: 5.7 Consensus size: 46
71543197 AGGGTATAAT
* * * ** *
71543207 GCCGATGCCATGTCCTAGAAATGGTCTTACACTGGCTCACCCATC-AA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATCGTA
** * * *
71543254 TTCGATGCCATGTCCCATACATGGTCTTACATTAGCTCTTACATATCCGT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-T-CATAT-CGTA
* * * *
71543304 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATATCGTA
* *
71543350 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-AA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGTA
* * * *
71543395 TGCCGATGTATGTCCTAGACATGTCTTACACTGGCATTTCATAAT-GTG
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TCTCAT-ATCGTA
* *
71543443 GCCAATGCATGTCCCAGACATGTCCTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
71543474 AGCACACACA
Statistics
Matches: 176, Mismatches: 33, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.06
45 18 0.10
46 50 0.28
47 63 0.36
48 2 0.01
49 4 0.02
50 29 0.16
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCGTA
Found at i:71543460 original size:93 final size:94
Alignment explanation
Indices: 71543204--71543476 Score: 252
Period size: 93 Copynumber: 2.9 Consensus size: 94
71543194 CATAGGGTAT
* * ** * ** *
71543204 AATGCCGATGCCATGTCCTAGAAATGGTCTTACACTGGCTCACCCATC-AATTCGATGCCATGTC
1 AATGCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATATCGTAGCCAATG-CATGTC
* *
71543268 CCATACATGGTCTTACATTAGCTCTTACATATC
63 CCAGACAT-GTCTTACACTAGCTCTTACATATC
** * *
71543301 CGTGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCA
1 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATATCGTAGCCAATGCATGTCCCA
* *
71543366 GACATGTCTTACACTGGCTC-T-CATCTC
66 GACATGTCTTACACTAGCTCTTACATATC
* * *
71543393 AATGCCGATG-TATGTCCTAGACAT-GTCTTACACTGGCATTTCATAAT-GTGGCCAATGCATGT
1 AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACA---CAT-ATCGTAGCCAATGCATGT
*
71543455 CCCAGACATGTCCTACACTAGC
62 CCCAGACATGTCTTACACTAGC
71543477 ACACACATAT
Statistics
Matches: 148, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
90 13 0.09
91 13 0.09
92 13 0.09
93 37 0.25
94 14 0.09
95 18 0.12
96 7 0.05
97 33 0.22
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (94 bp):
AATGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATATCGTAGCCAATGCATGTCCCA
GACATGTCTTACACTAGCTCTTACATATC
Found at i:71547650 original size:51 final size:50
Alignment explanation
Indices: 71547582--71547716 Score: 166
Period size: 49 Copynumber: 2.7 Consensus size: 50
71547572 TGTGAGGTCG
71547582 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTG-TGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCC--AAACTGTTGATCA
* *** * * **
71547633 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCAGACTGTTGCTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAACTGTTGATCA
71547682 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
71547717 TAGATAGCTT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
48 5 0.07
49 33 0.47
50 2 0.03
51 30 0.43
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAACTGTTGATCA
Found at i:71547707 original size:49 final size:50
Alignment explanation
Indices: 71547579--71547709 Score: 158
Period size: 51 Copynumber: 2.6 Consensus size: 50
71547569 TATTGTGAGG
**
71547579 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTACACGTACCC-AAAACTGTGA
* * * * *
71547630 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CC-AGACTGTTGC
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCAAAACTG-TGA
*
71547679 TTGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
71547710 TGCGTACTAG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 5 0.07
49 30 0.43
50 2 0.03
51 32 0.46
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (50 bp):
TCGCATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCAAAACTGTGA
Found at i:71559972 original size:28 final size:28
Alignment explanation
Indices: 71559940--71559996 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
71559930 GCGTCCCAGA
71559940 GTTCGGTGCTGCACTGGGCTTATATACG
1 GTTCGGTGCTGCACTGGGCTTATATACG
71559968 GTTCGGTGCTGCACTGGGCTTATATACG
1 GTTCGGTGCTGCACTGGGCTTATATACG
71559996 G
1 G
71559997 AGGAGTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.21, G:0.33, T:0.32
Consensus pattern (28 bp):
GTTCGGTGCTGCACTGGGCTTATATACG
Found at i:71564231 original size:48 final size:48
Alignment explanation
Indices: 71564134--71564259 Score: 119
Period size: 48 Copynumber: 2.6 Consensus size: 48
71564124 CATTAGGGGA
* * * ** *
71564134 TACATTGAGTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGTGAGT
1 TACATCGATTTGGCTTCGGGCCATGATATAAGCACTTCAGGCATAAGT
* *
71564182 TATATCGATTTGGCTTCGGGCCATGATATAAGCATTTC-GGACATAAGT
1 TACATCGATTTGGCTTCGGGCCATGATATAAGCACTTCAGG-CATAAGT
* * * * *
71564230 TACCTTGATTTAGCTTCGGGGCATGGTATA
1 TACATCGATTTGGCTTCGGGCCATGATATA
71564260 GGTACTTAGT
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
47 2 0.03
48 61 0.97
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (48 bp):
TACATCGATTTGGCTTCGGGCCATGATATAAGCACTTCAGGCATAAGT
Found at i:71565914 original size:20 final size:22
Alignment explanation
Indices: 71565886--71565938 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
71565876 AATCACTTAA
*
71565886 GTATCGATACTCATT-CA-ATG
1 GTATTGATACTCATTACAGATG
* * *
71565906 GTATTGATATTCCTTATAGATG
1 GTATTGATACTCATTACAGATG
71565928 GTATTGATACT
1 GTATTGATACT
71565939 GCTTAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 12 0.46
21 1 0.04
22 13 0.50
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (22 bp):
GTATTGATACTCATTACAGATG
Found at i:71575658 original size:31 final size:31
Alignment explanation
Indices: 71575584--71575659 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
71575574 GCACATATTT
*
71575584 ATATACTAAATAAAATAATAATATAATAATAA
1 ATAT-CTAATTAAAATAATAATATAATAATAA
* * *
71575616 ATATATTATTAAAATATTAA-ATAAATAATAA
1 ATATCTAATTAAAATAATAATAT-AATAATAA
*
71575647 TTATCTAATTAAA
1 ATATCTAATTAAA
71575660 TAACTATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
30 2 0.06
31 30 0.83
32 4 0.11
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (31 bp):
ATATCTAATTAAAATAATAATATAATAATAA
Found at i:71576524 original size:14 final size:14
Alignment explanation
Indices: 71576505--71576533 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
71576495 TATTAAAGGG
71576505 GAGGTCCTTATGAT
1 GAGGTCCTTATGAT
71576519 GAGGTCCTTATGAT
1 GAGGTCCTTATGAT
71576533 G
1 G
71576534 CAATTAGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (14 bp):
GAGGTCCTTATGAT
Found at i:71581490 original size:27 final size:27
Alignment explanation
Indices: 71581438--71581956 Score: 589
Period size: 27 Copynumber: 19.2 Consensus size: 27
71581428 TTACCAGATC
*
71581438 ACCAAAATACCCCT-GTTTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* **
71581464 ACCAAAATACCTTTGGTTTACAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* *
71581491 ACCAAAATACTCC-TGATTTATAAAATT
1 ACCAAAATAC-CCTTGGTTTGTAAAATT
71581518 ACCAAAATACCCTTGGTTTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* * *
71581545 ACTAAAATACTCTTGGTTTATAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
*
71581572 ACCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
*
71581599 ACCAAAATAGCCC-TAGTTTGTAAAATT
1 ACCAAAATA-CCCTTGGTTTGTAAAATT
* * * **
71581626 ACCAAAATTCCTTTAGTTTACAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* * **
71581653 AGCAAAATACCCCTCGACTTGTAAAATT
1 ACCAAAATA-CCCTTGGTTTGTAAAATT
*
71581681 ACCAAAATACCCTTAGTTTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* * *
71581708 ACTAAAATACCATTGGTTTATAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
*
71581735 ACCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
71581762 ACCAAAATACCCTTGGTTTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* *
71581789 ACTAAAATACCCTTGGTTTATAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
71581816 ACCAAAATA-CCTCTGGTTTGTAAAATT
1 ACCAAAATACCCT-TGGTTTGTAAAATT
* * *
71581843 ACCAAAACACCCCTAGTTTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* * *
71581870 ACCAAAATACCCCTGATTTGTGAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
** ***
71581897 ACTGAAATACCCTTGACCTGTAAAATT
1 ACCAAAATACCCTTGGTTTGTAAAATT
* **
71581924 A-CAGAAATACCCTCGACTTGTAAAATT
1 ACCA-AAATACCCTTGGTTTGTAAAATT
71581951 ACCAAA
1 ACCAAA
71581957 GAACCCTCAA
Statistics
Matches: 418, Mismatches: 65, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
26 19 0.05
27 372 0.89
28 27 0.06
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
ACCAAAATACCCTTGGTTTGTAAAATT
Found at i:71581552 original size:81 final size:81
Alignment explanation
Indices: 71581438--71581956 Score: 652
Period size: 81 Copynumber: 6.4 Consensus size: 81
71581428 TTACCAGATC
* * *
71581438 ACCAAAATACCCCT-GTTTGTAAAATTACCAAAATACCTTTGGTTTACAAAATTACCAAAATACT
1 ACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCTTTGGTTTATAAAATTACCAAAATACC
* *
71581502 CCTGATTTATAAAATT
66 CCTGGTTTGTAAAATT
* *
71581518 ACCAAAATACCCTTGGTTTGTAAAATTACTAAAATA-CTCTTGGTTTATAAAATTACCAAAATAC
1 ACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCT-TTGGTTTATAAAATTACCAAAATAC
71581582 CCCTGGTTTGTAAAATT
65 CCCTGGTTTGTAAAATT
* * * *
71581599 ACCAAAATAGCCC-TAGTTTGTAAAATTACCAAAATTCCTTTAGTTTACAAAATTAGCAAAATAC
1 ACCAAAATA-CCCTTAGTTTGTAAAATTACCAAAATACCTTTGGTTTATAAAATTACCAAAATAC
**
71581663 CCCTCGACTTGTAAAATT
65 CCCT-GGTTTGTAAAATT
* *
71581681 ACCAAAATACCCTTAGTTTGTAAAATTACTAAAATACCATTGGTTTATAAAATTACCAAAATACC
1 ACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCTTTGGTTTATAAAATTACCAAAATACC
71581746 CCTGGTTTGTAAAATT
66 CCTGGTTTGTAAAATT
* * *
71581762 ACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACC
1 ACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCTTTGGTTTATAAAATTACCAAAATACC
*
71581827 TCTGGTTTGTAAAATT
66 CCTGGTTTGTAAAATT
* * ** * * * **
71581843 ACCAAAACACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACC
1 ACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCTTTGGTTTATAAAATTACCAAAATACC
* ***
71581908 CTTGACCTGTAAAATT
66 CCTGGTTTGTAAAATT
* *
71581924 A-CAGAAATACCC-TCGACTTGTAAAATTACCAAA
1 ACCA-AAATACCCTTAG-TTTGTAAAATTACCAAA
71581957 GAACCCTCAA
Statistics
Matches: 388, Mismatches: 43, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
80 19 0.05
81 295 0.76
82 74 0.19
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
ACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCTTTGGTTTATAAAATTACCAAAATACC
CCTGGTTTGTAAAATT
Found at i:71581962 original size:27 final size:27
Alignment explanation
Indices: 71581438--71582017 Score: 457
Period size: 27 Copynumber: 21.5 Consensus size: 27
71581428 TTACCAGATC
71581438 ACCAAAATACCC-CTG-TTTGTAAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATT
* * * **
71581464 ACCAAAATACCTTTGGTTTACAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
*
71581491 ACCAAAATACTCCT-GATTTATAAAATT
1 ACCAAAATAC-CCTCGATTTGTAAAATT
* *
71581518 ACCAAAATACCCTTGGTTTGTAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
* * * * *
71581545 ACTAAAATACTCTTGGTTTATAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
*
71581572 ACCAAAATACCC-CTGGTTTGTAAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATT
*
71581599 ACCAAAATAGCCCTAG-TTTGTAAAATT
1 ACCAAAATA-CCCTCGATTTGTAAAATT
* ** **
71581626 ACCAAAAT-TCCTTTAGTTTACAAAATT
1 ACCAAAATACCCTCGA-TTTGTAAAATT
* *
71581653 AGCAAAATACCCCTCGACTTGTAAAATT
1 ACCAAAATA-CCCTCGATTTGTAAAATT
*
71581681 ACCAAAATACCCT-TAGTTTGTAAAATT
1 ACCAAAATACCCTCGA-TTTGTAAAATT
* * * * *
71581708 ACTAAAATACCATTGGTTTATAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
*
71581735 ACCAAAATACCC-CTGGTTTGTAAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATT
* *
71581762 ACCAAAATACCCTTGGTTTGTAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
* * * *
71581789 ACTAAAATACCCTTGGTTTATAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
*
71581816 ACCAAAATA-CCTCTGGTTTGTAAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATT
* *
71581843 ACCAAAACACCC-CTAGTTTGTAAAATT
1 ACCAAAATACCCTCGA-TTTGTAAAATT
*
71581870 ACCAAAATACCC-CTGATTTGTGAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATT
** * **
71581897 ACTGAAATACCCTTGACCTGTAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
*
71581924 A-CAGAAATACCCTCGACTTGTAAAATT
1 ACCA-AAATACCCTCGATTTGTAAAATT
* * *
71581951 ACCAAAGA-ACCCTCAATTTATATAATT
1 ACCAAA-ATACCCTCGATTTGTAAAATT
*** **
71581978 ACCATTTTACCCTCGATTTACAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATT
* *
71582005 ACCGAAGTACCCT
1 ACCAAAATACCCT
71582018 TATAGGGTAG
Statistics
Matches: 453, Mismatches: 77, Indels: 47
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.01
26 19 0.04
27 399 0.88
28 28 0.06
29 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
ACCAAAATACCCTCGATTTGTAAAATT
Found at i:71581963 original size:54 final size:54
Alignment explanation
Indices: 71581438--71582018 Score: 518
Period size: 54 Copynumber: 10.8 Consensus size: 54
71581428 TTACCAGATC
* * **
71581438 ACCAAAATACCC-CTG-TTTGTAAAATTACCAAAATACCTTTGGTTTACAAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
* *
71581491 ACCAAAATACTCCT-GATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATT
1 ACCAAAATAC-CCTCGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
* * * * * * *
71581545 ACTAAAATACTCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
* * * **
71581599 ACCAAAATAGCCCTAG-TTTGTAAAATTACCAAAAT-TCCTTTAGTTTACAAAATT
1 ACCAAAATA-CCCTCGATTTGTAAAATTACCAAAATACCCTTGA-TTTGTAAAATT
* *
71581653 AGCAAAATACCCCTCGACTTGTAAAATTACCAAAATACCCTT-AGTTTGTAAAATT
1 ACCAAAATA-CCCTCGATTTGTAAAATTACCAAAATACCCTTGA-TTTGTAAAATT
* * * * * * *
71581708 ACTAAAATACCATTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
* * * * *
71581762 ACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATT
1 ACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
* * *
71581816 ACCAAAATA-CCTCTGGTTTGTAAAATTACCAAAACACCCCT-AGTTTGTAAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTTGA-TTTGTAAAATT
* ** **
71581870 ACCAAAATACCC-CTGATTTGTGAAATTACTGAAATACCCTTGACCTGTAAAATT
1 ACCAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
* ** * *
71581924 A-CAGAAATACCCTCGACTTGTAAAATTACCAAAGA-ACCCTCAATTTATATAATT
1 ACCA-AAATACCCTCGATTTGTAAAATTACCAAA-ATACCCTTGATTTGTAAAATT
*** ** * *
71581978 ACCATTTTACCCTCGATTTACAAAATTACCGAAGTACCCTT
1 ACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTT
71582019 ATAGGGTAGA
Statistics
Matches: 437, Mismatches: 73, Indels: 35
0.80 0.13 0.06
Matches are distributed among these distances:
53 21 0.05
54 365 0.84
55 47 0.11
56 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
ACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
Found at i:71582031 original size:27 final size:27
Alignment explanation
Indices: 71582001--71582143 Score: 144
Period size: 27 Copynumber: 5.3 Consensus size: 27
71581991 CGATTTACAA
* *
71582001 AATTACCGAAGTACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
71582028 AATTACCGAAATATCCC-TGTAGGTTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
* * *
71582055 AATTTCTGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
71582082 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
71582109 AATTATCGAGATACCCTTGTGGGGTTAA
1 AATTACCGAAATACCCTTGTAGGG-TAG
71582137 AATTACC
1 AATTACC
71582144 ACTTTGCCCC
Statistics
Matches: 92, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 79 0.86
28 11 0.12
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:71582082 original size:54 final size:54
Alignment explanation
Indices: 71582001--71582144 Score: 164
Period size: 54 Copynumber: 2.6 Consensus size: 54
71581991 CGATTTACAA
* * * * * *
71582001 AATTACCGAAGTACCCTTATAGGGTAGAATTACCGAAATATCCCTGTAGGTTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
71582055 AATT-TCTGAAATATCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * *
71582109 AATTATCGAGATACCCTTGTGGGGTTAAAATTACCA
1 AATTATCGAAATACCCTTGTAGGG-TAGAATTACCA
71582145 CTTTGCCCCT
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 62 0.84
55 11 0.15
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:71582563 original size:22 final size:22
Alignment explanation
Indices: 71582530--71582594 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
71582520 GCCAATTATT
* *
71582530 CTGATTATGGCTTTGCGCCAAC
1 CTGAATATGGCTCTGCGCCAAC
**
71582552 CT-ACATATGGCTCTATGCCAAC
1 CTGA-ATATGGCTCTGCGCCAAC
* *
71582574 CTGATTATGGCTGTGCGCCAA
1 CTGAATATGGCTCTGCGCCAA
71582595 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (22 bp):
CTGAATATGGCTCTGCGCCAAC
Found at i:71582805 original size:27 final size:27
Alignment explanation
Indices: 71582752--71582805 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
71582742 TATTCTGTTA
* * *
71582752 AGTGGCTTTGCCACATTATCTGTTTCT
1 AGTGGCTATGCCACAATATCTGATTCT
71582779 AGTGGCTATGCCACAAATATCT-ATTCT
1 AGTGGCTATGCCAC-AATATCTGATTCT
71582806 GGAGGCTCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (27 bp):
AGTGGCTATGCCACAATATCTGATTCT
Found at i:71582987 original size:6 final size:6
Alignment explanation
Indices: 71582978--71583093 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
71582968 TTGCATTCAC
* * *
71582978 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCGCCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
71583028 ATTCTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* * *
71583077 GTTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
71583094 AGTTTTTATA
Statistics
Matches: 86, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
5 5 0.06
6 69 0.80
7 8 0.09
8 4 0.05
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:71583009 original size:25 final size:25
Alignment explanation
Indices: 71582981--71583042 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
71582971 CATTCACATT
* * *
71582981 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTATCACCTAATA
* *
71583006 CTGATTCTGATTCTATCGCCTAATT
1 CTGATTCTGATTCTATCACCTAATA
71583031 CTGATTCTGATT
1 CTGATTCTGATT
71583043 TTGATTCTGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTAATA
Found at i:71583013 original size:31 final size:31
Alignment explanation
Indices: 71582978--71583081 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
71582968 TTGCATTCAC
* *
71582978 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTAACCTGATTCTG
*
71583009 ATTCTGATTCT-A-TC-GCCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG--TAA-CCTGATTCTG
* *
71583040 ATTTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTAACCTGATTCTG
*
71583071 ATTCTGGTTCT
1 ATTCTGATTCT
71583082 CATTTTGATT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
28 1 0.02
29 2 0.03
30 3 0.05
31 47 0.80
32 3 0.05
33 2 0.03
34 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTAACCTGATTCTG
Found at i:71583041 original size:37 final size:37
Alignment explanation
Indices: 71583000--71583094 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
71582990 ATTCTGTTAC
* *
71583000 CTGATACTGATTCTGATTCTATCGCCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* * *
71583037 CTGATTTTGATTCTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* * *
71583074 CTGGTTCTCATTTTGATTCTA
1 CTGATTCTGATTCTGATTCTA
71583095 GTTTTTATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
Found at i:71585131 original size:27 final size:27
Alignment explanation
Indices: 71585072--71585394 Score: 339
Period size: 27 Copynumber: 12.0 Consensus size: 27
71585062 TTAGAATAAT
* * *
71585072 TTAGTTTATCAAATCACC-AAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* *
71585098 CTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
**
71585125 TTAGTTTACAAAATTACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* *
71585152 CTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
*
71585179 TTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
71585206 TTAGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* *
71585233 TTAGTTTGTAAATTTACTAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
71585260 TTGGTTTATAAAATTACCAAAATGCCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
71585287 CTGGTTTGTAAAATTGCCAAAATACCC
1 TTAGTTTGTAAAATTACCAAAATACCC
* * *
71585314 CT-GATTTGTGAAATTACTAAAATACCC
1 TTAG-TTTGTAAAATTACCAAAATACCC
* * **
71585341 -TCGACTTGTAAAATTACTGAAATACCC
1 TTAG-TTTGTAAAATTACCAAAATACCC
* * *
71585368 TCGACTTT-TAAAATTACCAAAGTACCC
1 T-TAGTTTGTAAAATTACCAAAATACCC
71585395 CCGATTTACA
Statistics
Matches: 253, Mismatches: 39, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.06
27 236 0.93
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACCAAAATACCC
Found at i:71585225 original size:81 final size:81
Alignment explanation
Indices: 71585082--71585395 Score: 389
Period size: 81 Copynumber: 3.9 Consensus size: 81
71585072 TTAGTTTATC
* * **
71585082 AAATCACC-AAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAA
71585146 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
71585162 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAA
* *
71585227 ATACCCTTAGTTTGTA
66 ATACCCCTGGTTTGTA
* * * * * * *
71585243 AATTTACTAAAATACCCTTGGTTTATAAAATTACCAAAATGCCCCTGGTTTGTAAAATTGCCAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAA
* *
71585308 ATACCCCTGATTTGTG
66 ATACCCCTGGTTTGTA
* * ** ** * *
71585324 AAATTACTAAAATACCCTCGACTTGTAAAATTACTGAAATACCCTCGACTTT-TAAAATTACCAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCT-TAGTTTGTAAAATTACCAA
*
71585388 AGTACCCC
65 AATACCCC
71585396 CGATTTACAA
Statistics
Matches: 201, Mismatches: 31, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
80 7 0.03
81 191 0.95
82 3 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:71585449 original size:27 final size:26
Alignment explanation
Indices: 71585324--71585449 Score: 85
Period size: 27 Copynumber: 4.7 Consensus size: 26
71585314 CTGATTTGTG
* * **
71585324 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTAC-AAAGTACCCTCGATTTACA
*
71585351 AAATTACTGAAA-TACCCTCGACTTT-TA
1 AAATTAC--AAAGTACCCTCGA-TTTACA
*
71585378 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTA-CAAAGTACCCTCGATTTACA
* ***
71585405 AAATTGCCATTTTACCCTCGATTTACA
1 AAATT-ACAAAGTACCCTCGATTTACA
71585432 AAATTACAGAAGTACCCT
1 AAATTACA-AAGTACCCT
71585450 TGGAGGGTAG
Statistics
Matches: 79, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
26 8 0.10
27 65 0.82
28 6 0.08
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACAAAGTACCCTCGATTTACA
Found at i:71585463 original size:27 final size:27
Alignment explanation
Indices: 71585433--71585573 Score: 140
Period size: 27 Copynumber: 5.2 Consensus size: 27
71585423 CGATTTACAA
* * *
71585433 AATTACAGAAGTACCCTTGGAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
71585460 AATTACTGAAATACTCC-TGTAGGTTAG
1 AATTACTGAAATAC-CCTTGTAGGGTAG
* * *
71585487 AATTACCGAAATACCCTTCTAGGGCAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
71585514 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * * *
71585541 AATTACCGAGATACCATTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
71585568 AATTAC
1 AATTAC
71585574 CATTTTGCCC
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 88 0.96
28 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:71585491 original size:54 final size:54
Alignment explanation
Indices: 71585433--71585555 Score: 156
Period size: 54 Copynumber: 2.3 Consensus size: 54
71585423 CGATTTACAA
* * * * * *
71585433 AATTACAGAAGTACCCTTGGAGGGTAGAATTACTGAAATACTCCTGTAGGTTAG
1 AATTACAGAAATACCCTTCGAGGGCAGAAATACTGAAATACCCCTGTAGGGTAG
* *
71585487 AATTACCGAAATACCCTTCTAGGGCAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTACAGAAATACCCTTCGAGGGCAGAAATACTGAAATACCCCTGTAGGGTAG
* *
71585541 AATTACCGAGATACC
1 AATTACAGAAATACC
71585556 ATTGTGGGGT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (54 bp):
AATTACAGAAATACCCTTCGAGGGCAGAAATACTGAAATACCCCTGTAGGGTAG
Found at i:71585603 original size:49 final size:49
Alignment explanation
Indices: 71585543--71585643 Score: 193
Period size: 49 Copynumber: 2.1 Consensus size: 49
71585533 TAGGGTAGAA
*
71585543 TTACCGAGATACCATTGTGGGGTAAAATTACCATTTTGCCCCTAGGGTG
1 TTACCGAGATACCATTCTGGGGTAAAATTACCATTTTGCCCCTAGGGTG
71585592 TTACCGAGATACCATTCTGGGGTAAAATTACCATTTTGCCCCTAGGGTG
1 TTACCGAGATACCATTCTGGGGTAAAATTACCATTTTGCCCCTAGGGTG
71585641 TTA
1 TTA
71585644 AATGACTGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (49 bp):
TTACCGAGATACCATTCTGGGGTAAAATTACCATTTTGCCCCTAGGGTG
Found at i:71586292 original size:27 final size:26
Alignment explanation
Indices: 71586262--71586340 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
71586252 TATTTTTGGT
*
71586262 GGCTATGCCACAAATATCTGTTCTGGA
1 GGCTCTGCCAC-AATATCTGTTCTGGA
*
71586289 GGCTCTGCCACAATATCTGTATCTGGT
1 GGCTCTGCCACAATATCTGT-TCTGGA
* **
71586316 GACTCTATCACAATATCTGTTCTGG
1 GGCTCTGCCACAATATCTGTTCTGG
71586341 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 14 0.30
27 32 0.70
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GGCTCTGCCACAATATCTGTTCTGGA
Found at i:71586467 original size:6 final size:6
Alignment explanation
Indices: 71586458--71586561 Score: 61
Period size: 6 Copynumber: 16.8 Consensus size: 6
71586448 TTGCATTCAC
* *
71586458 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * * * *
71586508 ATTTTG ATTCTA ATTTTG GTTATG ATTCTG CCA-CCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG --ATTCTG ATTCTG ATTCTG
71586557 ATTCT
1 ATTCT
71586562 CATTTTTATT
Statistics
Matches: 74, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
5 5 0.07
6 57 0.77
7 8 0.11
8 4 0.05
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:71586489 original size:25 final size:25
Alignment explanation
Indices: 71586461--71586518 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
71586451 CATTCACATT
* *
71586461 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTATCACCTGATA
*
71586486 CTGATTCTGATTCTATCACCTGATT
1 CTGATTCTGATTCTATCACCTGATA
*
71586511 TTGATTCT
1 CTGATTCT
71586519 AATTTTGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTGATA
Found at i:71588540 original size:27 final size:27
Alignment explanation
Indices: 71588491--71588721 Score: 284
Period size: 27 Copynumber: 8.6 Consensus size: 27
71588481 TTAGTTTACC
* *
71588491 AAATCACC-AAATACCCGTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
71588517 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71588544 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71588571 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** *
71588598 AAATTACTAAAATATCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71588625 AAACTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
71588652 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
71588679 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
71588706 AAATTACTGAAATACC
1 AAATTACCAAAATACC
71588722 ATCGACCTGT
Statistics
Matches: 177, Mismatches: 27, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
26 7 0.04
27 170 0.96
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:71588733 original size:54 final size:54
Alignment explanation
Indices: 71588511--71588749 Score: 239
Period size: 54 Copynumber: 4.4 Consensus size: 54
71588501 ATACCCGTGG
* * ** * * *
71588511 TTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACC-CCTA
1 TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATCGA
* * * *
71588564 GTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATATCATTGG
1 -TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATCGA
* * * * *
71588619 TTTATAAAACTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACC-CCTA
1 TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATCGA
* * *
71588672 GTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCATCGA
1 -TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATCGA
** **
71588727 CCTGTAAAATTACTGAAATACCC
1 TTTGTAAAATTACCAAAATACCC
71588750 TCGACTTGTA
Statistics
Matches: 152, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
54 150 0.99
55 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATCGA
Found at i:71588733 original size:81 final size:81
Alignment explanation
Indices: 71588491--71588786 Score: 233
Period size: 81 Copynumber: 3.7 Consensus size: 81
71588481 TTAGTTTACC
* * * * * *
71588491 AAATCACC-AAATACCCGTGGTTTGTAAAATTACCAAAATA-CCCTTAGTTTACAAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGA-TTTATAAAACTACCAA
**
71588554 AATACCCCT-AGTTTGTA
65 AATACCCCTGA-CCTGTA
* * * * ** *
71588571 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATATCATTGGTTTATAAAACTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAACTACCAAA
***
71588636 ATACCCCTGGTTTGTA
66 ATACCCCTGACCTGTA
* * * **
71588652 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAACTACCAAA
*
71588717 ATA-CCATCGACCTGTA
66 ATACCCCT-GACCTGTA
** * * * * **
71588733 AAATTACTGAAATA-CCCTCGACTTGTAAAACTACCAAAGTACCCCCAATTTATA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTTATA
71588787 GAATTGCCAT
Statistics
Matches: 175, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
80 15 0.09
81 158 0.90
82 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAACTACCAAA
ATACCCCTGACCTGTA
Found at i:71588775 original size:27 final size:26
Alignment explanation
Indices: 71588511--71588777 Score: 210
Period size: 27 Copynumber: 9.9 Consensus size: 26
71588501 ATACCCGTGG
**
71588511 TTTGTAAAATTACCAAAATACCCTTA
1 TTTGTAAAATTACCAAAATACCCCGA
** *
71588537 GTTTACAAAATTACCAAAATACCCCTA
1 -TTTGTAAAATTACCAAAATACCCCGA
* *
71588564 GTTTGTAAAATTACCAAAATACCCTTGG
1 -TTTGTAAAATTACCAAAATACCC-CGA
* *** *
71588592 TTTGTAAAATTACTAAAATATCATTGG
1 TTTGTAAAATTACCAAAATA-CCCCGA
* * *
71588619 TTTATAAAACTACCAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATACCCC-GA
*
71588646 TTTGTAAAATTACCAAAATACCCCTA
1 TTTGTAAAATTACCAAAATACCCCGA
71588672 GTTTGTAAAATTACCAAAATACCCCTGA
1 -TTTGTAAAATTACCAAAATACCCC-GA
* ** *
71588700 TTTGTGAAATTACTGAAATACCATCGA
1 TTTGTAAAATTACCAAAATACC-CCGA
** **
71588727 CCTGTAAAATTACTGAAATACCCTCGA
1 TTTGTAAAATTACCAAAATACCC-CGA
* * *
71588754 CTTGTAAAACTACCAAAGTACCCC
1 TTTGTAAAATTACCAAAATACCCC
71588778 CAATTTATAG
Statistics
Matches: 198, Mismatches: 35, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.01
27 193 0.97
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
TTTGTAAAATTACCAAAATACCCCGA
Found at i:71588948 original size:54 final size:55
Alignment explanation
Indices: 71588813--71588957 Score: 172
Period size: 54 Copynumber: 2.7 Consensus size: 55
71588803 CTCAATTTAC
* * * * *
71588813 AAAATTACCGAAG-TACCCTTGTAAGGTAGGATTACCGAAATACCCCTGTAGGTT
1 AAAATTACCGAAGATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGT
* * *
71588867 AGAATTACCGAA-ATACCTTTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGT
1 AAAATTACCGAAGATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGT
*
71588921 AAAATTACC-AAGATACCCTTGTGGGGTA-AAATTACCA
1 AAAATTACCGAAGATACCCTTGTAGGGTAGAAA-TACCA
71588958 TTTTGTCCCT
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 5 0.07
54 71 0.93
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (55 bp):
AAAATTACCGAAGATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGT
Found at i:71588957 original size:27 final size:27
Alignment explanation
Indices: 71588813--71588956 Score: 148
Period size: 27 Copynumber: 5.3 Consensus size: 27
71588803 CTCAATTTAC
* *
71588813 AAAATTACCGAAGTACCCTTGTAAGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
** * *
71588840 AGGATTACCGAAATACCCCTGTAGGTT
1 AAAATTACCGAAATACCCTTGTAGGGT
* *
71588867 AGAATTACCGAAATACCTTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
** *
71588894 AGAAA-TACTAAAATACCCCTGTAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
*
71588921 AAAATTACC-AAGATACCCTTGTGGGGT
1 AAAATTACCGAA-ATACCCTTGTAGGGT
71588948 AAAATTACC
1 AAAATTACC
71588957 ATTTTGTCCC
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.05
27 89 0.93
28 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:71589396 original size:22 final size:23
Alignment explanation
Indices: 71589346--71589408 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
71589336 CAATTATTCT
* *
71589346 GATTATGGCTTTGCGCCAACCTA
1 GATTATGGCTCTGTGCCAACCTA
*
71589369 CA-TATGGCTCTGTGCCAACC-A
1 GATTATGGCTCTGTGCCAACCTA
* *
71589390 GATTATGACTGTGTGCCAA
1 GATTATGGCTCTGTGCCAA
71589409 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.91
23 1 0.03
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (23 bp):
GATTATGGCTCTGTGCCAACCTA
Found at i:71589597 original size:27 final size:27
Alignment explanation
Indices: 71589567--71589667 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
71589557 ATTCTGTTAA
* *
71589567 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
71589594 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
71589621 GAGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
71589648 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
71589668 ATTCTGGCAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:71589633 original size:54 final size:53
Alignment explanation
Indices: 71589569--71589674 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
71589559 TCTGTTAAGT
* * * * *
71589569 GGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTGGA
1 GGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTATTCTGGA
* *
71589623 GGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTATTCTGG
1 GGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTATTCTGG
71589675 CAGTCATGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
GGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTATTCTGGA
Found at i:71589801 original size:6 final size:6
Alignment explanation
Indices: 71589792--71589916 Score: 69
Period size: 6 Copynumber: 20.3 Consensus size: 6
71589782 TTGCATTCAC
* * *
71589792 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * * *
71589842 ATTCTG ATTTTG ATTTTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
71589891 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
71589917 AATGTTTCTT
Statistics
Matches: 92, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
5 5 0.05
6 75 0.82
7 9 0.10
8 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:71589823 original size:25 final size:25
Alignment explanation
Indices: 71589795--71589856 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
71589785 CATTCACATT
* *
71589795 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
71589820 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
*
71589845 CTGATTTTGATT
1 CTGATTCTGATT
71589857 TTGATTTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:71589862 original size:37 final size:37
Alignment explanation
Indices: 71589815--71589907 Score: 141
Period size: 37 Copynumber: 2.5 Consensus size: 37
71589805 TTCTGTTACC
* *
71589815 TGATACTGATTCTGATTCTGTCACCTAATTCTGATTT
1 TGATTCTGATTTTGATTCTGTCACCTAATTCTGATTT
* *
71589852 TGATTTTGATTTTGATTCTGTCACCTGATTCTGATTT
1 TGATTCTGATTTTGATTCTGTCACCTAATTCTGATTT
*
71589889 TGATTCTCATTTTGATTCT
1 TGATTCTGATTTTGATTCT
71589908 AGTTCTGATA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (37 bp):
TGATTCTGATTTTGATTCTGTCACCTAATTCTGATTT
Found at i:71592448 original size:32 final size:32
Alignment explanation
Indices: 71592411--71592476 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
71592401 ACGAGACTCG
71592411 GATAATGTTATCGTCTCTTTACCATGAAATTA
1 GATAATGTTATCGTCTCTTTACCATGAAATTA
71592443 GATAATGTTATCGTCTCTTTACCATGAAATTA
1 GATAATGTTATCGTCTCTTTACCATGAAATTA
71592475 GA
1 GA
71592477 CTCAAAAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (32 bp):
GATAATGTTATCGTCTCTTTACCATGAAATTA
Found at i:71593215 original size:54 final size:54
Alignment explanation
Indices: 71593128--71593261 Score: 207
Period size: 54 Copynumber: 2.5 Consensus size: 54
71593118 CATCTTACGA
*
71593128 CGGGATTACCAGTCTAGGCTAAATCCCTAGTATCGTAAACTCATAAGGTGATAT
1 CGGGATTACCAGTCCAGGCTAAATCCCTAGTATCGTAAACTCATAAGGTGATAT
* * *
71593182 CGGGATTACTAGTCCAGGCTAAATCTCC-CGTATCGTAAACTCATAAGGTGATGT
1 CGGGATTACCAGTCCAGGCTAAATC-CCTAGTATCGTAAACTCATAAGGTGATAT
*
71593236 CAGGATTACCAGTCCAGGCTAAATCC
1 CGGGATTACCAGTCCAGGCTAAATCC
71593262 ATTATTGTGA
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
53 1 0.01
54 70 0.96
55 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (54 bp):
CGGGATTACCAGTCCAGGCTAAATCCCTAGTATCGTAAACTCATAAGGTGATAT
Found at i:71596183 original size:54 final size:53
Alignment explanation
Indices: 71596119--71596253 Score: 216
Period size: 54 Copynumber: 2.5 Consensus size: 53
71596109 CATCTTACGG
* *
71596119 CGGGATTACCAGTCCAGACTAAATCCCCTGTATCGTAAACTCATAAGGTGATGT
1 CGGGATTACCAGTCTAGGCTAAATCCCC-GTATCGTAAACTCATAAGGTGATGT
*
71596173 CGGGATTACCAGTCTAGGCTAAATACCCCGTATTGTAAACTCATAAGGTGATGT
1 CGGGATTACCAGTCTAGGCTAAAT-CCCCGTATCGTAAACTCATAAGGTGATGT
*
71596227 TGGGATTACCAGTCTAGGCTAAATCCC
1 CGGGATTACCAGTCTAGGCTAAATCCC
71596254 TTATTGTGAA
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
53 3 0.04
54 69 0.91
55 4 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (53 bp):
CGGGATTACCAGTCTAGGCTAAATCCCCGTATCGTAAACTCATAAGGTGATGT
Found at i:71603318 original size:27 final size:26
Alignment explanation
Indices: 71603270--71603329 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
71603260 GCGAGGCTAC
*
71603270 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* *
71603297 CAGATATTGTGGCTAAGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
71603323 CAGATAT
1 CAGATAT
71603330 ATATATATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71603342 original size:33 final size:32
Alignment explanation
Indices: 71603291--71603354 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
71603281 ACGAAGTCAC
*
71603291 CAGATACAGATATTGTGGCTAAGCCACCAGAA
1 CAGATACAGATATTGTGGCAAAGCCACCAGAA
* *
71603323 CAGATATATATATATGTGGCAAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCAAAGCCACCAGA
71603355 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCAAAGCCACCAGAA
Found at i:71604112 original size:27 final size:27
Alignment explanation
Indices: 71604074--71604138 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
71604064 GGGGCAAAAT
71604074 GGTAACTT-TACCCCACAAGGGTATCTC
1 GGTAA-TTCTACCCCACAAGGGTATCTC
* * *
71604101 GGTAATTCTACCCTACAATGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
71604128 GGTAATTCTAC
1 GGTAATTCTAC
71604139 AACTTATCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCCACAAGGGTATCTC
Found at i:71608417 original size:13 final size:13
Alignment explanation
Indices: 71608399--71608425 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71608389 GCTCGACAGG
71608399 GACACGCCCGTGT
1 GACACGCCCGTGT
71608412 GACACGCCCGTGT
1 GACACGCCCGTGT
71608425 G
1 G
71608426 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:71612878 original size:21 final size:23
Alignment explanation
Indices: 71612838--71612880 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
71612828 TTTGTGAATT
71612838 AGGGACTAAAGTGTCAAAATGTG
1 AGGGACTAAAGTGTCAAAATGTG
*
71612861 AGGG-CTAAATTGT-AAAATGT
1 AGGGACTAAAGTGTCAAAATGT
71612881 TCTAAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 8 0.42
23 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.26
Consensus pattern (23 bp):
AGGGACTAAAGTGTCAAAATGTG
Found at i:71630257 original size:60 final size:59
Alignment explanation
Indices: 71630120--71630271 Score: 159
Period size: 60 Copynumber: 2.5 Consensus size: 59
71630110 CTATTCAGAA
* *
71630120 ATCAGAGTCA-ACTAGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGT-ATACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
* *
71630180 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAG-CCCTATAACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCT-T-ACAG
* *
71630240 AGTC-GAGATATATTGGGCCTTGCCCATATCAA
1 A-TCAGAG-TATACTGGGCCTAGCCCATATCAA
71630272 CACAGTTGGC
Statistics
Matches: 79, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
59 8 0.10
60 53 0.67
61 18 0.23
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAG
Found at i:71630683 original size:44 final size:44
Alignment explanation
Indices: 71630620--71630706 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
71630610 CTTGAAGGGC
*
71630620 GTAATCGTAAACTTACCCCTTTAGGGGTATTATGATAATTCTAT
1 GTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTAT
71630664 GTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTA
1 GTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTA
71630707 CCTTACAGAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (44 bp):
GTAATCGTAAACTTACCCCTTTAGGGGTATTACGATAATTCTAT
Found at i:71633872 original size:29 final size:29
Alignment explanation
Indices: 71633833--71633911 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
71633823 CTTAATAATC
*
71633833 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
71633863 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
71633892 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
71633912 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:71641237 original size:47 final size:47
Alignment explanation
Indices: 71641168--71641265 Score: 196
Period size: 47 Copynumber: 2.1 Consensus size: 47
71641158 TAGATATTCT
71641168 CGGGAATGTGTTTCGTCTGAGGCTATCATGTGTAAACATTTCGAGGA
1 CGGGAATGTGTTTCGTCTGAGGCTATCATGTGTAAACATTTCGAGGA
71641215 CGGGAATGTGTTTCGTCTGAGGCTATCATGTGTAAACATTTCGAGGA
1 CGGGAATGTGTTTCGTCTGAGGCTATCATGTGTAAACATTTCGAGGA
71641262 CGGG
1 CGGG
71641266 TTGGATGAAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (47 bp):
CGGGAATGTGTTTCGTCTGAGGCTATCATGTGTAAACATTTCGAGGA
Found at i:71649417 original size:43 final size:42
Alignment explanation
Indices: 71649347--71649508 Score: 125
Period size: 43 Copynumber: 3.8 Consensus size: 42
71649337 AGCTCATATA
* *
71649347 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATA-CG
*
71649390 ATGCC-ACTGTCCCAGACAG-GGTTTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATACG
** ** * ** *
71649432 ATGCTGATATCCCAAAAATGG-CATTACACATAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTC-TTACAC-GAAATCA-AA-TACG
*
71649476 ATGCCAACATCCCAGACGTGGTCTTACACGAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAA
71649509 ACACATATCG
Statistics
Matches: 92, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
42 22 0.24
43 42 0.46
44 26 0.28
45 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATACG
Found at i:71654730 original size:40 final size:39
Alignment explanation
Indices: 71654675--71654847 Score: 242
Period size: 40 Copynumber: 4.4 Consensus size: 39
71654665 ATAGTTCTGA
71654675 GCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCCG
1 GCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATATCCCG
*
71654715 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCCG
*
71654755 GCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATATCCCG
* *
71654795 GCTATGTCCCGAAGGCATTGAGCGAG-TAGCTATAT-CCG
1 GCTAAGTCCCGAAGGCATTGTGCGAGTTA-CTATATCCCG
* *
71654833 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
71654848 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
38 16 0.13
39 14 0.11
40 91 0.74
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
GCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCCG
Found at i:71654779 original size:80 final size:80
Alignment explanation
Indices: 71654633--71654847 Score: 269
Period size: 80 Copynumber: 2.7 Consensus size: 80
71654623 ATGATAACCG
* * * *
71654633 GGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGAATAGT-TCTGAGCTAAGTCCCGAAGGCATTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTCG
71654696 TGCGAGTTACTATATCCC
63 TGCGAGTTACTATATCCC
*
71654714 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
71654779 GAGTTACTATATCCG
66 GAGTTACTATATCCC
* * * *
71654794 GGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
71654848 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 10, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
78 16 0.13
79 17 0.14
80 63 0.52
81 21 0.17
82 4 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
GAGTTACTATATCCC
Found at i:71662842 original size:40 final size:40
Alignment explanation
Indices: 71662744--71662921 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
71662734 TGGATGATAA
* *
71662744 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGAATAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
*
71662785 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
71662825 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71662865 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
71662904 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
71662922 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
38 15 0.12
39 16 0.13
40 65 0.53
41 23 0.19
42 4 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:71669468 original size:42 final size:43
Alignment explanation
Indices: 71669363--71669510 Score: 149
Period size: 43 Copynumber: 3.4 Consensus size: 43
71669353 TTGCGTTTTT
* * * *
71669363 GTGTAAGACCACGTCTGGGACATTGGCATCGACT-TATAATTTAC
1 GTGTAAGACCACGTCTGGGATAGTGGCATCGA-TATTTGATTT-C
*
71669407 GTGTAAGACCACGTTTGGGAT-GTTGGCATC-ATATTTGATTTC
1 GTGTAAGACCACGTCTGGGATAG-TGGCATCGATATTTGATTTC
* * *
71669449 GTGTAAGACTATGTCTGGGATAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCACGTCTGGGATAGTGGCATCGATATTTGATTTC
* * *
71669492 ATGTAAGGCCACATCTGGG
1 GTGTAAGACCACGTCTGGG
71669511 TCGTTGGCAT
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 27 0.31
43 33 0.38
44 26 0.30
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGATAGTGGCATCGATATTTGATTTC
Found at i:71670280 original size:10 final size:10
Alignment explanation
Indices: 71670240--71670282 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
71670230 TATTGAAACA
*
71670240 TATGCTTTGG
1 TATGATTTGG
71670250 TATGATTTTGG
1 TATGA-TTTGG
*
71670261 TTTAGATTTGG
1 TAT-GATTTGG
71670272 TATGATTTGG
1 TATGATTTGG
71670282 T
1 T
71670283 TGGTGAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:71672068 original size:28 final size:28
Alignment explanation
Indices: 71671997--71672070 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
71671987 ATAATAAGCC
* *
71671997 CGCACACTTAGTGCT-TAATAGTCGAACT
1 CGCACACTTAGTGCTAT-ATAATCAAACT
*
71672025 CGCACACTTAATGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
71672053 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
71672071 CAATTTGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71680017 original size:28 final size:29
Alignment explanation
Indices: 71679985--71680083 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
71679975 ATAATAAGCC
*
71679985 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
71680013 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
71680041 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
71680070 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71680084 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:71687094 original size:79 final size:81
Alignment explanation
Indices: 71686958--71687140 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
71686948 TCGAATGATG
* *
71686958 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
71687022 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
71687037 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
71687099 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
71687117 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
71687141 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:71687156 original size:40 final size:40
Alignment explanation
Indices: 71686959--71687142 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
71686949 CGAATGATGT
* * * *
71686959 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
71686999 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
71687039 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
71687077 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
71687118 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71687143 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:71687164 original size:79 final size:79
Alignment explanation
Indices: 71687011--71687175 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
71687001 GGACTAAGAT
* **
71687011 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
71687076 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
71687090 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
71687153 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
71687169 CCGAAGG
1 CCGAAGG
71687176 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:71691665 original size:43 final size:42
Alignment explanation
Indices: 71691509--71691666 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
71691499 ATGTGTTTTT
* * * * *
71691509 GTGTAAGACCACGTTTGAGATGTTGGCAGCGACT-TATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATC-A-TATTTGA-TTAC
* *
71691553 GTGTAAGACCACGTCTGGGACGTTGACATCATATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTAC
** *
71691595 GTGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGGTTAC
1 GTGTAAGACCAC-GTCTGGGACGTTGGCATC-ATATTTGATTAC
*
71691638 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
71691667 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 29 0.31
43 39 0.41
44 26 0.27
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTAC
Found at i:71691834 original size:18 final size:18
Alignment explanation
Indices: 71691811--71691845 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
71691801 AAAGGTAAGA
71691811 ATATG-TATAAGTGATGAT
1 ATATGTTATAAGT-ATGAT
71691829 ATATGTTATAAGTATGA
1 ATATGTTATAAGTATGA
71691846 GAAAATATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (18 bp):
ATATGTTATAAGTATGAT
Found at i:71692415 original size:37 final size:38
Alignment explanation
Indices: 71692374--71692448 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
71692364 TTCATCCTTT
71692374 TTCATTTCTTTTGGCCG-AAATTCTAACGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAACGAAGGAGGAA
*
71692411 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAACGAAGGAGGAA
71692449 GGAGTTCCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 17 0.47
38 19 0.53
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAACGAAGGAGGAA
Found at i:71697499 original size:148 final size:148
Alignment explanation
Indices: 71697231--71697526 Score: 556
Period size: 148 Copynumber: 2.0 Consensus size: 148
71697221 TTCATGCTCG
71697231 TAACCAATCATTCCATGCAAAATACAATTCATCTAGGTAGTTACATATTTATACAATTCAATTCG
1 TAACCAATCATTCCATGCAAAATACAATTCATCTAGGTAGTTACATATTTATACAATTCAATTCG
* *
71697296 GCTATGTATAAAATAAATACATTCAATTTAACATCATTTTTTCACTTATGAACTTACCTCGGATG
66 GCTATGTATAAAAAAAATACATTCAATTTAACATAATTTTTTCACTTATGAACTTACCTCGGATG
* *
71697361 AAGACGAACGAACGGGGA
131 AAGACGAAAGAACAGGGA
71697379 TAACCAATCATTCCATGCAAAATACAATTCATCTAGGTAGTTACATATTTATACAATTCAATTCG
1 TAACCAATCATTCCATGCAAAATACAATTCATCTAGGTAGTTACATATTTATACAATTCAATTCG
71697444 GCTATGTATAAAAAAAATACATTCAATTTAACATAATTTTTTCACTTATGAACTTACCTCGGATG
66 GCTATGTATAAAAAAAATACATTCAATTTAACATAATTTTTTCACTTATGAACTTACCTCGGATG
71697509 AAGACGAAAGAACAGGGA
131 AAGACGAAAGAACAGGGA
71697527 CGACTATTCA
Statistics
Matches: 144, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
148 144 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (148 bp):
TAACCAATCATTCCATGCAAAATACAATTCATCTAGGTAGTTACATATTTATACAATTCAATTCG
GCTATGTATAAAAAAAATACATTCAATTTAACATAATTTTTTCACTTATGAACTTACCTCGGATG
AAGACGAAAGAACAGGGA
Found at i:71700651 original size:27 final size:26
Alignment explanation
Indices: 71700607--71700658 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71700597 CTCGCTGCAA
*
71700607 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
71700634 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
71700659 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:71700696 original size:67 final size:67
Alignment explanation
Indices: 71700588--71700725 Score: 213
Period size: 67 Copynumber: 2.1 Consensus size: 67
71700578 GAGGAAGCAT
* * * * *
71700588 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATTCTGGTGACCTAGCCACAA
71700653 TA
66 TA
* *
71700655 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATATTCTGGTGGCCTAGCCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATTCTGGTGACCTAGCCACAA
71700720 TA
66 TA
71700722 TCTG
1 TCTG
71700726 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATTCTGGTGACCTAGCCACAA
TA
Found at i:71700731 original size:27 final size:26
Alignment explanation
Indices: 71700673--71700734 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
71700663 CCTCGCTGCA
* *
71700673 ATCTGGTGGCTTCGCCACATATATAT
1 ATCTGGTGGCCTAGCCACATATATAT
* *
71700699 ATTCTGGTGGCCTAGCCACAATATCTGT
1 A-TCTGGTGGCCTAGCCAC-ATATATAT
71700727 ATCTGGTG
1 ATCTGGTG
71700735 ACTTCATCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.03
27 22 0.73
28 7 0.23
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (26 bp):
ATCTGGTGGCCTAGCCACATATATAT
Found at i:71702353 original size:40 final size:40
Alignment explanation
Indices: 71702263--71702478 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
71702253 ACCCAAGTAT
* ** * *
71702263 CTTCGGGATTTAG-CCGGATATAACCACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
71702301 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
71702341 CTTCTGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
71702381 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
71702421 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
*
71702461 CTTTGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
71702479 GTATCATTCG
Statistics
Matches: 148, Mismatches: 24, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 115 0.78
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71717686 original size:48 final size:48
Alignment explanation
Indices: 71717610--71717743 Score: 171
Period size: 48 Copynumber: 2.8 Consensus size: 48
71717600 CCCATGTAAC
* ** * *
71717610 GGCATTGGCATCGTTATGAGATTTCATGTAAGACCATGTCTGGGACAT
1 GGCATTGGCATCGATATGAGATCACATGTAAGACCATATCAGGGACAT
* * *
71717658 GGCATTGGCATCGACATGTGATCACATGTAAGACCATATCAGGGATAT
1 GGCATTGGCATCGATATGAGATCACATGTAAGACCATATCAGGGACAT
*
71717706 GGCATTGGCATCGATATGAGA-CATCGTGTAAGACCATA
1 GGCATTGGCATCGATATGAGATCA-CATGTAAGACCATA
71717744 GTTGGGCTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 2 0.03
48 72 0.97
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
GGCATTGGCATCGATATGAGATCACATGTAAGACCATATCAGGGACAT
Found at i:71725319 original size:30 final size:30
Alignment explanation
Indices: 71725285--71725345 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
71725275 TCCTTAACTC
71725285 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
71725315 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
71725345 A
1 A
71725346 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:71727904 original size:38 final size:39
Alignment explanation
Indices: 71727803--71728023 Score: 256
Period size: 39 Copynumber: 5.6 Consensus size: 39
71727793 GCTCCTCGTT
* *
71727803 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTATCTCGCA
* *
71727843 CAAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTATCTCGCA
*
71727882 CAAATG-CTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTATCTCGCA
*
71727920 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTATCTCGCA
* * *
71727959 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAT-TTAGT-ATC-TCGCA
71728000 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
71728024 CATCATTCAA
Statistics
Matches: 161, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 35 0.22
39 88 0.55
40 30 0.19
41 8 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTATCTCGCA
Found at i:71727921 original size:77 final size:79
Alignment explanation
Indices: 71727803--71728023 Score: 256
Period size: 77 Copynumber: 2.8 Consensus size: 79
71727793 GCTCCTCGTT
*
71727803 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
*
71727868 TTTAGTATCTCGCA
66 ATTAGTATCTCGCA
* * * *
71727882 CAAATG-CTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
71727944 AATTAGTATCTCGCA
65 AATTAGTATCTCGCA
* * * * * *
71727959 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCC
71728021 GGA
63 GGA
71728024 CATCATTCAA
Statistics
Matches: 123, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
76 1 0.01
77 64 0.52
78 17 0.14
79 35 0.28
80 6 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
ATTAGTATCTCGCA
Found at i:71735801 original size:40 final size:40
Alignment explanation
Indices: 71735757--71736018 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
71735747 GCTCCTCGTT
* *
71735757 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
71735797 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
71735837 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
71735876 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
71735915 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
71735954 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
71735995 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71736019 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 124 0.62
40 64 0.32
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:71739921 original size:47 final size:47
Alignment explanation
Indices: 71739809--71740032 Score: 168
Period size: 47 Copynumber: 4.8 Consensus size: 47
71739799 GGTTTATTGT
* ** *
71739809 GAGCTAGTGTAAGACATGCCTGGGACAT-GCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAAGACGA
* * * *
71739855 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAAGGCGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACAAGACGA
* ** * * *
71739903 GTGCTAGTGTAAGACATGTCTGGGACAT-GCATAAGCTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAAGACGA
* * * * *** *
71739949 TAGTTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGAA-A-TA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACAAGACGA
* *
71739995 TGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGG
1 -GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGG
71740033 AACCTTACCC
Statistics
Matches: 138, Mismatches: 35, Indels: 9
0.76 0.19 0.05
Matches are distributed among these distances:
46 36 0.26
47 71 0.51
48 31 0.22
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAAGACGA
Found at i:71739974 original size:94 final size:94
Alignment explanation
Indices: 71739811--71739984 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 94
71739801 TTTATTGTGA
** * *
71739811 GCTAGTGTAAGACATGCCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTT
1 GCTAGTGTAAGACATGCCTGGGACATGCATAAGCCACATGATGAGAGCCAGTGTAAGACCATGTC
*
71739876 TGGGACATGGCATCGGCCTCAAGGCGAGT
66 TGGGACATGACATCGGCCTCAAGGCGAGT
* * * **
71739905 GCTAGTGTAAGACATGTCTGGGACATGCATAAGCTACGA-GATGATAGTTAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGCCTGGGACATGCATAAGCCAC-ATGATGAGAGCCAGTGTAAGACCATGT
71739969 CTGGGACATGACATCG
65 CTGGGACATGACATCG
71739985 ACTTGAAATA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGCCTGGGACATGCATAAGCCACATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGACATCGGCCTCAAGGCGAGT
Found at i:71746026 original size:27 final size:26
Alignment explanation
Indices: 71745995--71746172 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
71745985 TAAATTGTAC
71745995 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
71746022 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
71746048 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
71746076 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
71746104 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
71746131 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
71746158 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71746173 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:71746111 original size:82 final size:81
Alignment explanation
Indices: 71745996--71746151 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
71745986 AAATTGTACA
* * *
71745996 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71746060 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71746077 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71746142 TGCGAGTTGA
65 TGCGAATTGA
71746152 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71746163 original size:82 final size:81
Alignment explanation
Indices: 71745992--71746172 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
71745982 GATTAAATTG
* * *
71745992 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71746057 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71746073 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71746137 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71746155 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71746173 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71746183 original size:27 final size:27
Alignment explanation
Indices: 71746077--71746183 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
71746067 TGACCATGCG
* * *
71746077 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
71746105 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
71746132 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
71746159 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
71746184 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:71768444 original size:69 final size:69
Alignment explanation
Indices: 71768333--71768467 Score: 234
Period size: 69 Copynumber: 2.0 Consensus size: 69
71768323 TAGACCATTC
71768333 GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
1 GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
71768398 GTTT
66 GTTT
* * * *
71768402 GGTGTTCTTTTAATATATGTCTAAATTGATATAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
1 GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
71768467 G
66 G
71768468 AACTTATAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (69 bp):
GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
GTTT
Found at i:71770385 original size:40 final size:40
Alignment explanation
Indices: 71770338--71770482 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
71770328 CTCGCACAAG
* * * * *
71770338 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
71770378 GCCTTCGGGACTTAGCCCGGATTTAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
71770418 GCGTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
71770459 GCCTTCGGGACTTATCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
71770483 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.65
41 25 0.28
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:71779315 original size:79 final size:81
Alignment explanation
Indices: 71779179--71779363 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
71779169 TTGAATGATG
* * * *
71779179 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTTAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTGAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
71779243 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * **
71779258 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
71779320 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
71779338 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71779364 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTGAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:71779370 original size:40 final size:39
Alignment explanation
Indices: 71779180--71779363 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
71779170 TGAATGATGT
* * * *
71779180 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTTAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
71779220 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
71779260 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71779298 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71779339 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71779364 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71779385 original size:79 final size:79
Alignment explanation
Indices: 71779232--71779396 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
71779222 GGACTAAGAT
* * **
71779232 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
71779297 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
71779311 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
71779374 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
71779390 CCGAAGG
1 CCGAAGG
71779397 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:71780785 original size:47 final size:47
Alignment explanation
Indices: 71780712--71781156 Score: 692
Period size: 47 Copynumber: 9.3 Consensus size: 47
71780702 GGGTGTTACA
71780712 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
71780759 ATATATGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
71780806 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----T
71780857 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
71780904 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
**
71780953 ATATATGTGATAAGGCCTAATGGCTAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
71781002 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
71781049 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
71781096 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
71781143 ATAAATGTGATAAG
1 ATATATGTGATAAG
71781157 TCCCGAAGGG
Statistics
Matches: 372, Mismatches: 20, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 233 0.63
49 92 0.25
51 47 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:71780894 original size:145 final size:145
Alignment explanation
Indices: 71780712--71781145 Score: 728
Period size: 145 Copynumber: 3.0 Consensus size: 145
71780702 GGGTGTTACA
*
71780712 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* *
71780777 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
71780842 TGTGAAAGTGTATAT
131 TGTGAAAGTGTATAT
*
71780857 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* *
71780922 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTAATGTGATG
66 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
71780987 AATGTGAAAGTG--TAT
129 AATGTGAAAGTGTATAT
71781002 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * * *
71781067 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
71781132 TGTGAAAGTGTATA
131 TGTGAAAGTGTATA
71781146 AATGTGATAA
Statistics
Matches: 270, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
143 40 0.15
145 185 0.69
147 45 0.17
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (145 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
TGTGAAAGTGTATAT
Found at i:71780910 original size:98 final size:96
Alignment explanation
Indices: 71780712--71781156 Score: 695
Period size: 98 Copynumber: 4.7 Consensus size: 96
71780702 GGGTGTTACA
*
71780712 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGAC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
71780775 CTAATAGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
71780806 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAG
71780871 GCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64 GCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
71780904 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
**
71780969 CTAATGGCTAATGTGATGAATGTGAAAGTGTAT
66 CTAATGGCCGATGTGATGAATGTGAAAGTG--T
71781002 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
71781065 CTAATGGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
71781096 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
71781157 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 17, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
94 96 0.29
95 1 0.00
96 94 0.29
98 135 0.41
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:71793365 original size:27 final size:27
Alignment explanation
Indices: 71793335--71793386 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
71793325 GTTATACATA
*
71793335 TCATAGGATTAT-ATCAGTCATTTTACC
1 TCATAGGAGTATGA-CAGTCATTTTACC
*
71793362 TCATAGGGGTATGACAGTCATTTTA
1 TCATAGGAGTATGACAGTCATTTTA
71793387 TCAAATTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATAGGAGTATGACAGTCATTTTACC
Found at i:71802546 original size:16 final size:17
Alignment explanation
Indices: 71802525--71802564 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
71802515 AATCAAGATG
71802525 AACATAAACCATAA-TC-
1 AACATAAACCA-AATTCA
71802541 AACAT-AACCAAATTCA
1 AACATAAACCAAATTCA
71802557 AACATAAA
1 AACATAAA
71802565 AGTTAAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 7 0.33
16 10 0.48
17 2 0.10
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (17 bp):
AACATAAACCAAATTCA
Found at i:71803397 original size:56 final size:56
Alignment explanation
Indices: 71803337--71803472 Score: 200
Period size: 56 Copynumber: 2.4 Consensus size: 56
71803327 CCCCAGACAG
* * *
71803337 GGTCTTACTTGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACATATTAAACGT
* * * * *
71803393 GGTCTTACTCACATACATACATCAGAATCACATATCAATGCCAACATATTAAACTT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACATATTAAACGT
71803449 GGTCTTACTCGCACACATATATCG
1 GGTCTTACTCGCACACATATATCG
71803473 ATGCCATGGT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACATATTAAACGT
Found at i:71805912 original size:28 final size:27
Alignment explanation
Indices: 71805873--71805929 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
71805863 GAATTTGAGT
*
71805873 AATTAGGGCTAAATTGTAAAAT-AATG
1 AATTAGGGCTAAAATGTAAAATAAATG
*
71805899 AATTGAGGGACTAAAATGTGAAATAAATG
1 AATT-AGGG-CTAAAATGTAAAATAAATG
71805928 AA
1 AA
71805930 ATATAACGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 4 0.15
28 12 0.46
29 6 0.23
ACGTcount: A:0.49, C:0.04, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTAGGGCTAAAATGTAAAATAAATG
Found at i:71807717 original size:20 final size:20
Alignment explanation
Indices: 71807692--71807731 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
71807682 AGTATGACTC
71807692 AAATTGATATAATTATATGT
1 AAATTGATATAATTATATGT
71807712 AAATTGATATAATTATATGT
1 AAATTGATATAATTATATGT
71807732 GCATAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (20 bp):
AAATTGATATAATTATATGT
Found at i:71809931 original size:16 final size:16
Alignment explanation
Indices: 71809896--71809938 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
71809886 ATGAATCGGC
*
71809896 AAAAGCCGAAATGCCA
1 AAAAGCTGAAATGCCA
**
71809912 AAAAGCTGAAATGCTG
1 AAAAGCTGAAATGCCA
71809928 AAAAGCTGAAA
1 AAAAGCTGAAA
71809939 GTTGGGCTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCA
Found at i:71810208 original size:29 final size:26
Alignment explanation
Indices: 71810157--71810260 Score: 75
Period size: 29 Copynumber: 3.7 Consensus size: 26
71810147 TGAGTATAAT
* *
71810157 ATGATTTGGGCCTAATGGACCATATGA
1 ATGAATTGGGCCTAGTGG-CCATATGA
*
71810184 AGGTGAATTGGGCCTAGTCGGCCATAAGAA
1 A--TGAATTGGGCCTAGT-GGCCATATG-A
*
71810214 TATGAATTGGGCC-AGATAGGCCATTTGA
1 -ATGAATTGGGCCTAG-T-GGCCATATGA
*
71810242 ATAAGATTGGGCCTAGTGG
1 ATGA-ATTGGGCCTAGTGG
71810261 GCTATATGCA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
27 6 0.10
28 12 0.19
29 40 0.65
30 3 0.05
31 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (26 bp):
ATGAATTGGGCCTAGTGGCCATATGA
Done.