Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 216 of 332
Found at i:71816173 original size:27 final size:27
Alignment explanation
Indices: 71816143--71816692 Score: 627
Period size: 27 Copynumber: 20.4 Consensus size: 27
71816133 CCCCAAAATA
* ** *
71816143 GGTAAAATGACTGTAATACCCCTACAA
1 GGTAAAATGACCGTAATACCCCTGTAG
71816170 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
71816197 GGTAAAATGACCATAATACCCATGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * * *
71816224 GGTAAAATAACCGTATTGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
71816251 GGTAAAATGACTGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
71816278 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
71816305 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* **
71816332 GGTAAAATGACTGTAATACCGTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
71816359 GGTAAAATGACCGTAAT-GCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* ** *
71816385 GATAAAATGATTGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
71816412 GGTAAAATGACCATAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
71816439 GGTAAAATGATCATAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
71816466 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
71816493 GGTAAAATGACCGTAATGCCCTTATAAG
1 GGTAAAATGACCGTAATACCCCTGT-AG
* *
71816521 GG-AAAATGACCGTAATACCTCTGTTG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
71816547 GGTTAAATGACCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
** * *
71816574 GGTAAAATGAATGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
** * *
71816601 GGTAAAATGGTCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
71816628 GGTAAAATGACCGTGATACCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
71816655 GGTAAAATGACCGTGATACCCTTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
71816682 GGTAAAATGAC
1 GGTAAAATGAC
71816693 GAGTAGCCCT
Statistics
Matches: 453, Mismatches: 67, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.05
27 426 0.94
28 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:71816869 original size:27 final size:26
Alignment explanation
Indices: 71816829--71816920 Score: 114
Period size: 27 Copynumber: 3.5 Consensus size: 26
71816819 ATGGAAGAAG
*
71816829 TACTG-TACTGGTGGCTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
71816854 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* *
71816882 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
*
71816909 TACTGTTTCTGG
1 TACTGTTACTGG
71816921 CAACTATGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
25 1 0.02
26 5 0.09
27 49 0.84
28 3 0.05
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:71817056 original size:59 final size:59
Alignment explanation
Indices: 71816964--71817092 Score: 249
Period size: 59 Copynumber: 2.2 Consensus size: 59
71816954 ACTGCGATAT
*
71816964 TGGTGTGCTGGGTGGGTGGGTCGATTTATATCCCTATATGGTGTGTTGGTTGGTATGAA
1 TGGTGTGCTGGGTGGGTGGGTCGATTTATATCCCTACATGGTGTGTTGGTTGGTATGAA
71817023 TGGTGTGCTGGGTGGGTGGGTCGATTTATATCCCTACATGGTGTGTTGGTTGGTATGAA
1 TGGTGTGCTGGGTGGGTGGGTCGATTTATATCCCTACATGGTGTGTTGGTTGGTATGAA
71817082 TGGTGTGCTGG
1 TGGTGTGCTGG
71817093 CAGGATTTGG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 69 1.00
ACGTcount: A:0.12, C:0.09, G:0.40, T:0.38
Consensus pattern (59 bp):
TGGTGTGCTGGGTGGGTGGGTCGATTTATATCCCTACATGGTGTGTTGGTTGGTATGAA
Found at i:71822260 original size:49 final size:50
Alignment explanation
Indices: 71822149--71822279 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 50
71822139 TGAGATGTGT
* *
71822149 TAGTGTAAGACCATGTC-GGAACATGGCATTGGCACGGATATGTGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGC
* * * * *
71822198 TAGTGCAAAACCATGTCTGGGACATGGCATCGGC-CTTGAT-TTTGATAG-
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGC
71822246 TCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGG
71822280 TATTATACCT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.01
49 52 0.74
50 17 0.24
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (50 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGC
Found at i:71824205 original size:68 final size:68
Alignment explanation
Indices: 71824058--71824213 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
71824048 AGTCGATTTG
* * * * *
71824058 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
71824123 TATC
65 TATA
* *
71824127 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
71824189 ATATAGTA
62 ATATA-TA
71824197 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
71824214 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:71831328 original size:28 final size:28
Alignment explanation
Indices: 71831296--71831380 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
71831286 AATTATCCGG
71831296 TACACGTAGTAGCCTGCACTTAGTATTA
1 TACACGTAGTAGCCTGCACTTAGTATTA
* * * *
71831324 TACACGT-G-A-CCT-AAC-CA-TCTGA
1 TACACGTAGTAGCCTGCACTTAGTATTA
*
71831346 TACACGTAGTAGCCTGCACTTAGTACTA
1 TACACGTAGTAGCCTGCACTTAGTATTA
*
71831374 CACACGT
1 TACACGT
71831381 GATCATAGTT
Statistics
Matches: 41, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
22 10 0.24
23 2 0.05
24 3 0.07
25 6 0.15
26 3 0.07
27 2 0.05
28 15 0.37
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (28 bp):
TACACGTAGTAGCCTGCACTTAGTATTA
Found at i:71831420 original size:51 final size:49
Alignment explanation
Indices: 71831244--71831428 Score: 192
Period size: 50 Copynumber: 3.7 Consensus size: 49
71831234 CGAAGCTATC
* * * *
71831244 TGGTACGCATAGTAGCCTGCACATAGTACTACACACGAG-CCTAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATT-TT
* * * * ** *
71831293 CGGTACACGTAGTAGCCTGCACTTAGTATTATACACGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTTT
* * * *
71831343 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAATTTT
71831393 TGGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 T-GGTACACATAGTAGCCTGCACTTAGTACTACACA
71831429 TGCGACCTCA
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
49 32 0.29
50 45 0.40
51 35 0.31
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTTT
Found at i:71833618 original size:15 final size:15
Alignment explanation
Indices: 71833563--71833626 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
71833553 TAAATATAAC
*
71833563 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71833577 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
71833592 GAA-AAA-CCAGAATA
1 -AAGAAATCCAGAATA
71833606 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
71833621 AAGAAA
1 AAGAAA
71833627 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
13 2 0.05
14 18 0.42
15 21 0.49
16 2 0.05
ACGTcount: A:0.64, C:0.12, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71836715 original size:49 final size:50
Alignment explanation
Indices: 71836643--71836875 Score: 245
Period size: 49 Copynumber: 4.7 Consensus size: 50
71836633 CTGGTACGCA
* * * *
71836643 TAGTAGCCTGCACATGGTACTACACATGCGACC-AATTATCCGGTAGACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* *
71836692 TAGTAGCCTGCACATAGTACTACACACGAG-CCTAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * ** * *
71836741 TAGTAGCCTGCACTTAGTATTATACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * * ** * *
71836791 TAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCTAATTATCCGGTACACG
*
71836842 TAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT
71836876 CACAATAGAT
Statistics
Matches: 154, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
48 2 0.01
49 68 0.44
50 46 0.30
51 38 0.25
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
Found at i:71836767 original size:28 final size:28
Alignment explanation
Indices: 71836735--71836819 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
71836725 AATTATCCGG
71836735 TACACGTAGTAGCCTGCACTTAGTATTA
1 TACACGTAGTAGCCTGCACTTAGTATTA
* * * *
71836763 TACACGT-G-A-CCT-AAC-CA-TCTGA
1 TACACGTAGTAGCCTGCACTTAGTATTA
*
71836785 TACACGTAGTAGCCTGCACTTAGTACTA
1 TACACGTAGTAGCCTGCACTTAGTATTA
*
71836813 CACACGT
1 TACACGT
71836820 GATCATAGTT
Statistics
Matches: 41, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
22 10 0.24
23 2 0.05
24 3 0.07
25 6 0.15
26 3 0.07
27 2 0.05
28 15 0.37
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (28 bp):
TACACGTAGTAGCCTGCACTTAGTATTA
Found at i:71836866 original size:99 final size:97
Alignment explanation
Indices: 71836630--71836874 Score: 256
Period size: 101 Copynumber: 2.5 Consensus size: 97
71836620 TAGCCGAAGC
* * * ** * *
71836630 TATCTGGTACGCATAGTAGCCTGCACATGGTACTACACATGCGACCAATTATCCGGTAGACGTAG
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA-GCGACCAACCATCCGATACACGTAG
*
71836695 TAGCCTGCACATAGTACTACACACGAGCCTAAT
65 TAGCCTGCACATAGTACTACACACGAGCATAAT
* * * * * *
71836728 TATCCGGTACACGTAGTAGCCTGCACTTAGTATTATACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA-GCGACC-AACCATCCGATACACGTA
* * *
71836793 GTAGCCTGCACTTAGTACTACACACGTGATCATAGT
64 GTAGCCTGCACATAGTACTACACAC--GAGCATAAT
* **
71836829 TTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA-GCGACC
71836875 TCACAATAGA
Statistics
Matches: 117, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
98 37 0.32
99 37 0.32
101 43 0.37
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (97 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACAGCGACCAACCATCCGATACACGTAGT
AGCCTGCACATAGTACTACACACGAGCATAAT
Found at i:71846989 original size:69 final size:69
Alignment explanation
Indices: 71846878--71847012 Score: 234
Period size: 69 Copynumber: 2.0 Consensus size: 69
71846868 TAGACCATTC
71846878 GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
1 GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
71846943 GTTT
66 GTTT
* * * *
71846947 GGTGTTCTTTTAATATATGTCTAAATTGATATAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
1 GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
71847012 G
66 G
71847013 AACTTATAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (69 bp):
GGTGTTCTTTTAATATACGTCGAAATTGACACAGGACCTTTTAGTCTTGCGCAATCTACTTAGAT
GTTT
Found at i:71848968 original size:39 final size:40
Alignment explanation
Indices: 71848882--71849025 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
71848872 CTCGCACAAG
* * * * *
71848882 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
71848922 GCCTTCGGGACTTAGCCCGGAT-TAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
71848961 GCGTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
71849002 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
71849026 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
38 3 0.03
39 30 0.34
40 27 0.30
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:71859945 original size:40 final size:40
Alignment explanation
Indices: 71859881--71860201 Score: 425
Period size: 40 Copynumber: 8.1 Consensus size: 40
71859871 AGGTCTCGAC
*
71859881 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
71859920 GATGTATCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
71859960 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
71860000 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
71860040 GATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
71860080 GATGTATCCGGGCT-AGTTCTG-A-AGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
71860117 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * * *
71860157 GTTATATCTGGGCTAGGTCCGGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
71860197 GATGT
1 GATGT
71860202 GTATTCGGGC
Statistics
Matches: 248, Mismatches: 30, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
37 26 0.10
38 4 0.02
39 10 0.04
40 208 0.84
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:71860163 original size:117 final size:120
Alignment explanation
Indices: 71859885--71860201 Score: 442
Period size: 117 Copynumber: 2.7 Consensus size: 120
71859875 CTCGACGATG
** * *
71859885 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
*
71859950 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
***
71860005 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
* * *
71860070 TCATGCTAGTGATGTATCCGGGCT-AGTTCTG-A-AGCATTCGTGCTAGTGATAT
66 TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * * * * * *
71860122 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCTGGGCTAGGTCCGGAAGAGCAA
1 ATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
*
71860187 TCATGCTGGTGATGT
66 TCATGCTAGTGATGT
71860202 GTATTCGGGC
Statistics
Matches: 179, Mismatches: 18, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
117 87 0.49
118 1 0.01
119 5 0.03
120 86 0.48
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
ATCCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:71872327 original size:40 final size:40
Alignment explanation
Indices: 71872264--71872526 Score: 259
Period size: 39 Copynumber: 6.8 Consensus size: 40
71872254 AGGTCTCGAC
71872264 GATG-ATCCGGGCTAA-TCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
71872302 GATGTATCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71872342 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
71872381 GA--TAT---GGAT-AGTTCCGAAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCG--AAGAGCATTCGTGCTAGT
* * *
71872417 GATATATCCGGGAC-ATACT-CCGAAGAGCATTCATG-TAGT
1 GATGTATCCGGG-CTA-AGTCCCGAAGAGCATTCGTGCTAGT
* *
71872456 GATGTA-CCGGGCTAAGTTCTGAAGAGCATTCGGTG-TAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTC-GTGCTAGT
* * *
71872495 GATATATCCGTGCTAA-ACCCGAAGAGCATTCG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCG
71872527 GCTGGTGTTA
Statistics
Matches: 191, Mismatches: 17, Indels: 34
0.79 0.07 0.14
Matches are distributed among these distances:
33 3 0.02
34 6 0.03
36 19 0.10
37 6 0.03
38 26 0.14
39 65 0.34
40 59 0.31
41 2 0.01
42 3 0.02
43 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:71881124 original size:40 final size:40
Alignment explanation
Indices: 71881077--71881219 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
71881067 CTCGCACAAG
* * * * *
71881077 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
71881117 GCCTTCGGGACTTAGCCCGGAT-TAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
71881156 G-CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
71881196 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
71881220 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
37 3 0.03
38 15 0.17
39 22 0.25
40 30 0.34
41 16 0.18
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:71884159 original size:43 final size:43
Alignment explanation
Indices: 71884112--71884211 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
71884102 GAGTAAATGA
* *
71884112 CACTAAGTGTGCGATATAATTATAGCTTCGGCTAATTATTTGG
1 CACTAAGTGTGCGATATAATTATAGCTTCGACTAATTAATTGG
* *
71884155 CACTAAGTTTGCGATATGATTATAGCTTCGACTAATTAATTGG
1 CACTAAGTGTGCGATATAATTATAGCTTCGACTAATTAATTGG
71884198 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
71884212 GTTCGTTGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (43 bp):
CACTAAGTGTGCGATATAATTATAGCTTCGACTAATTAATTGG
Found at i:71891808 original size:102 final size:102
Alignment explanation
Indices: 71891632--71891830 Score: 389
Period size: 102 Copynumber: 2.0 Consensus size: 102
71891622 TAGGGGTCAA
71891632 AATGAAAATTTGCAAAAATATGATTTATGGACCCATTTGAATAATGTGAGTAATAAATGAGCTAT
1 AATGAAAATTTGCAAAAATATGATTTATGGACCCATTTGAATAATGTGAGTAATAAATGAGCTAT
*
71891697 ATTTCTAATGTTAGATCAAGAAAATTGAGATTTGAAT
66 ATTTCTAATGTTAGATCAAGAAAATCGAGATTTGAAT
71891734 AATGAAAATTTGCAAAAATATGATTTATGGACCCATTTGAATAATGTGAGTAATAAATGAGCTAT
1 AATGAAAATTTGCAAAAATATGATTTATGGACCCATTTGAATAATGTGAGTAATAAATGAGCTAT
71891799 ATTTCTAATGTTAGATCAAGAAAATCGAGATT
66 ATTTCTAATGTTAGATCAAGAAAATCGAGATT
71891831 CCGGCTAAAA
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 96 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.34
Consensus pattern (102 bp):
AATGAAAATTTGCAAAAATATGATTTATGGACCCATTTGAATAATGTGAGTAATAAATGAGCTAT
ATTTCTAATGTTAGATCAAGAAAATCGAGATTTGAAT
Found at i:71892242 original size:48 final size:48
Alignment explanation
Indices: 71892166--71892437 Score: 343
Period size: 48 Copynumber: 5.9 Consensus size: 48
71892156 TACCGCAGTT
* *
71892166 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* * *
71892214 ATACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
*
71892262 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGG---------TT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* * *
71892299 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
71892347 ATACATGCAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
71892395 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
71892438 GTAACGTGGT
Statistics
Matches: 192, Mismatches: 21, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
37 4 0.02
38 29 0.15
47 63 0.33
48 96 0.50
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Found at i:71892319 original size:38 final size:38
Alignment explanation
Indices: 71892268--71892477 Score: 186
Period size: 38 Copynumber: 5.0 Consensus size: 38
71892258 ATTGATTCAT
*
71892268 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
**
71892306 TAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATG
1 TAACGTGGTGCTAAGTGGATATA-C-------CAC-GGTT-ATACATG
* *
71892354 CAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG
*
71892395 ATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 ------TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
*
71892439 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
71892477 T
1 T
71892478 TAATTTGAAA
Statistics
Matches: 141, Mismatches: 13, Indels: 36
0.74 0.07 0.19
Matches are distributed among these distances:
38 60 0.43
39 3 0.02
40 7 0.05
41 2 0.01
44 2 0.01
45 3 0.02
46 3 0.02
47 33 0.23
48 28 0.20
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
Found at i:71892322 original size:85 final size:86
Alignment explanation
Indices: 71892214--71892385 Score: 283
Period size: 85 Copynumber: 2.0 Consensus size: 86
71892204 ACACATATTG
* * * * *
71892214 ATACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCAT-TAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGCAACGTGGTG
71892278 CTAAGTGGATATACCACGGTT
66 CTAAGTGGATATACCACGGTT
*
71892299 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGCAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGCAACGTGGTG
71892364 CTAAGTGGATATACCACGGTT
66 CTAAGTGGATATACCACGGTT
71892385 A
1 A
71892386 CATATATTGA
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
85 49 0.61
86 31 0.39
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (86 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGCAACGTGGTG
CTAAGTGGATATACCACGGTT
Found at i:71892374 original size:133 final size:133
Alignment explanation
Indices: 71892136--71892475 Score: 572
Period size: 133 Copynumber: 2.6 Consensus size: 133
71892126 GGAATGGAAA
* * *
71892136 AACGTGGTGCTAAGTGGATGTACCGCAGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
* * *
71892201 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTC
66 ATTACACATATTGATACATGCAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC
71892266 ATT
131 ATT
*
71892269 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
71892334 ATTACACATATTGATACATGCAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC
66 ATTACACATATTGATACATGCAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC
71892399 ATT
131 ATT
* * *
71892402 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
* *
71892467 GTTATACAT
66 ATTACACAT
71892476 GTTAATTTGA
Statistics
Matches: 194, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 194 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (133 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
ATTACACATATTGATACATGCAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC
ATT
Found at i:71896927 original size:794 final size:794
Alignment explanation
Indices: 71895399--71896989 Score: 3173
Period size: 794 Copynumber: 2.0 Consensus size: 794
71895389 CTTGCCTCTA
71895399 GGTTTCTAATCCTATTAGAGTAACCTAGTTAAGTCATTAACCAATTTTTAACCAGCGAATATCAC
1 GGTTTCTAATCCTATTAGAGTAACCTAGTTAAGTCATTAACCAATTTTTAACCAGCGAATATCAC
*
71895464 TTGTTTATTCTTTGCGTTTAACCAAGATAAATACTAGTACTTCGCTTTGGCAAAATCTACATAGT
66 TTGTGTATTCTTTGCGTTTAACCAAGATAAATACTAGTACTTCGCTTTGGCAAAATCTACATAGT
71895529 ATTGATCGAGGCCTTAACGAGGGAAAAAATTGGAAGGCCATGTTGACTTAATATTTTAATAGAGG
131 ATTGATCGAGGCCTTAACGAGGGAAAAAATTGGAAGGCCATGTTGACTTAATATTTTAATAGAGG
71895594 GATTTTATTAAAGTTGTTGTATCTCACCAATTATGGTCTACTTCAATCCATTTAATCTTTTAATT
196 GATTTTATTAAAGTTGTTGTATCTCACCAATTATGGTCTACTTCAATCCATTTAATCTTTTAATT
71895659 GATCTCATCAATTAATGGGGTTTATTATTACCAAATTTGCATGCTTTAGACATCCATAGTATCTC
261 GATCTCATCAATTAATGGGGTTTATTATTACCAAATTTGCATGCTTTAGACATCCATAGTATCTC
71895724 ATACATGAATAGATAAAGCAATAAATAAATGCAATAGTTATAGGCTATAAACTATGGTGGTTCAA
326 ATACATGAATAGATAAAGCAATAAATAAATGCAATAGTTATAGGCTATAAACTATGGTGGTTCAA
71895789 CCCAAGCCAATGGGAGAACCAATAGGAAACCTAAAGGTGTAAGCCGTTTCACAAGCTGTCGGTCC
391 CCCAAGCCAATGGGAGAACCAATAGGAAACCTAAAGGTGTAAGCCGTTTCACAAGCTGTCGGTCC
71895854 ACATTAGTTGGCCCATCTTCCTTCTCGTCTAGTCCACAGCAACTTTTGCAAATTACAATATTCAG
456 ACATTAGTTGGCCCATCTTCCTTCTCGTCTAGTCCACAGCAACTTTTGCAAATTACAATATTCAG
71895919 ACACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATATAAGAGAATAATAGTAAGGCAC
521 ACACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATATAAGAGAATAATAGTAAGGCAC
71895984 GAGACGCAGGCCGTTTTTATAAAATTACAACCTTTTATCAAATGGGTCATCGGGCTATAACTATG
586 GAGACGCAGGCCGTTTTTATAAAATTACAACCTTTTATCAAATGGGTCATCGGGCTATAACTATG
71896049 CATTTCAACCACCGTGCATTTCAAAAATAGCATACATCATTCAACGTTTTGCTAAATGAATTATA
651 CATTTCAACCACCGTGCATTTCAAAAATAGCATACATCATTCAACGTTTTGCTAAATGAATTATA
71896114 AAATATCCTTTCAACCTTTTATGGCCCATCAAGTTTTATTTATTACAAAACATACTGAAAGATGA
716 AAATATCCTTTCAACCTTTTATGGCCCATCAAGTTTTATTTATTACAAAACATACTGAAAGATGA
71896179 TGGGGATTTGAAGC
781 TGGGGATTTGAAGC
71896193 GGTTTCTAATCCTATTAGAGTAACCTAGTTAAGTCATTAACCAATTTTTAACCAGCGAATATCAC
1 GGTTTCTAATCCTATTAGAGTAACCTAGTTAAGTCATTAACCAATTTTTAACCAGCGAATATCAC
71896258 TTGTGTATTCTTTGCGTTTAACCAAGATAAATACTAGTACTTCGCTTTGGCAAAATCTACATAGT
66 TTGTGTATTCTTTGCGTTTAACCAAGATAAATACTAGTACTTCGCTTTGGCAAAATCTACATAGT
71896323 ATTGATCGAGGCCTTAACGAGGGAAAAAATTGGAAGGCCATGTTGACTTAATATTTTAATAGAGG
131 ATTGATCGAGGCCTTAACGAGGGAAAAAATTGGAAGGCCATGTTGACTTAATATTTTAATAGAGG
71896388 GATTTTATTAAAGTTGTTGTATCTCACCAATTATGGTCTACTTCAATCCATTTAATCTTTTAATT
196 GATTTTATTAAAGTTGTTGTATCTCACCAATTATGGTCTACTTCAATCCATTTAATCTTTTAATT
71896453 GATCTCATCAATTAATGGGGTTTATTATTACCAAATTTGCATGCTTTAGACATCCATAGTATCTC
261 GATCTCATCAATTAATGGGGTTTATTATTACCAAATTTGCATGCTTTAGACATCCATAGTATCTC
71896518 ATACATGAATAGATAAAGCAATAAATAAATGCAATAGTTATAGGCTATAAACTATGGTGGTTCAA
326 ATACATGAATAGATAAAGCAATAAATAAATGCAATAGTTATAGGCTATAAACTATGGTGGTTCAA
71896583 CCCAAGCCAATGGGAGAACCAATAGGAAACCTAAAGGTGTAAGCCGTTTCACAAGCTGTCGGTCC
391 CCCAAGCCAATGGGAGAACCAATAGGAAACCTAAAGGTGTAAGCCGTTTCACAAGCTGTCGGTCC
71896648 ACATTAGTTGGCCCATCTTCCTTCTCGTCTAGTCCACAGCAACTTTTGCAAATTACAATATTCAG
456 ACATTAGTTGGCCCATCTTCCTTCTCGTCTAGTCCACAGCAACTTTTGCAAATTACAATATTCAG
71896713 ACACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATATAAGAGAATAATAGTAAGGCAC
521 ACACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATATAAGAGAATAATAGTAAGGCAC
71896778 GAGACGCAGGCCGTTTTTATAAAATTACAACCTTTTATCAAATGGGTCATCGGGCTATAACTATG
586 GAGACGCAGGCCGTTTTTATAAAATTACAACCTTTTATCAAATGGGTCATCGGGCTATAACTATG
71896843 CATTTCAACCACCGTGCATTTCAAAAATAGCATACATCATTCAACGTTTTGCTAAATGAATTATA
651 CATTTCAACCACCGTGCATTTCAAAAATAGCATACATCATTCAACGTTTTGCTAAATGAATTATA
71896908 AAATATCCTTTCAACCTTTTATGGCCCATCAAGTTTTATTTATTACAAAACATACTGAAAGATGA
716 AAATATCCTTTCAACCTTTTATGGCCCATCAAGTTTTATTTATTACAAAACATACTGAAAGATGA
71896973 TGGGGATTTGAAGC
781 TGGGGATTTGAAGC
71896987 GGT
1 GGT
71896990 ACGAACTGCA
Statistics
Matches: 796, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
794 796 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Consensus pattern (794 bp):
GGTTTCTAATCCTATTAGAGTAACCTAGTTAAGTCATTAACCAATTTTTAACCAGCGAATATCAC
TTGTGTATTCTTTGCGTTTAACCAAGATAAATACTAGTACTTCGCTTTGGCAAAATCTACATAGT
ATTGATCGAGGCCTTAACGAGGGAAAAAATTGGAAGGCCATGTTGACTTAATATTTTAATAGAGG
GATTTTATTAAAGTTGTTGTATCTCACCAATTATGGTCTACTTCAATCCATTTAATCTTTTAATT
GATCTCATCAATTAATGGGGTTTATTATTACCAAATTTGCATGCTTTAGACATCCATAGTATCTC
ATACATGAATAGATAAAGCAATAAATAAATGCAATAGTTATAGGCTATAAACTATGGTGGTTCAA
CCCAAGCCAATGGGAGAACCAATAGGAAACCTAAAGGTGTAAGCCGTTTCACAAGCTGTCGGTCC
ACATTAGTTGGCCCATCTTCCTTCTCGTCTAGTCCACAGCAACTTTTGCAAATTACAATATTCAG
ACACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATATAAGAGAATAATAGTAAGGCAC
GAGACGCAGGCCGTTTTTATAAAATTACAACCTTTTATCAAATGGGTCATCGGGCTATAACTATG
CATTTCAACCACCGTGCATTTCAAAAATAGCATACATCATTCAACGTTTTGCTAAATGAATTATA
AAATATCCTTTCAACCTTTTATGGCCCATCAAGTTTTATTTATTACAAAACATACTGAAAGATGA
TGGGGATTTGAAGC
Found at i:71901481 original size:40 final size:40
Alignment explanation
Indices: 71901435--71901557 Score: 158
Period size: 40 Copynumber: 3.1 Consensus size: 40
71901425 GGGATTTAGT
71901435 CGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCC
* * * *
71901475 CGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCC
1 CGGATATAA-CAACTTGCACAAATGCCTTCGGGTCTTAGCC
* * * *
71901515 CGGATATAGCAACTTGCACGAATGCCTTCGGATCTTAGTC
1 CGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCC
71901555 CGG
1 CGG
71901558 TTATCATCCG
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 67 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCC
Found at i:71909676 original size:40 final size:40
Alignment explanation
Indices: 71909617--71909784 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
71909607 TCTTTGGGAT
*
71909617 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
71909656 TTACCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
71909696 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
71909736 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
71909776 TTAGTCCGG
1 TTAGCCCGG
71909785 TTATCATCCG
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 5 0.05
40 103 0.94
41 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:71916246 original size:27 final size:26
Alignment explanation
Indices: 71916198--71916254 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
71916188 GCGAGGCTGC
*
71916198 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
71916225 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
71916251 CAGA
1 CAGA
71916255 AATATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71923690 original size:27 final size:26
Alignment explanation
Indices: 71923642--71923701 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
71923632 GCGAGGCTGC
*
71923642 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
71923669 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
71923695 CAGATAT
1 CAGATAT
71923702 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71923714 original size:33 final size:32
Alignment explanation
Indices: 71923663--71923726 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
71923653 ACGAAGTCAC
* *
71923663 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
71923695 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
71923727 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:71923790 original size:27 final size:26
Alignment explanation
Indices: 71923742--71923793 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71923732 GCGAGGCTGC
*
71923742 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
71923768 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
71923794 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71925768 original size:43 final size:44
Alignment explanation
Indices: 71925679--71925804 Score: 116
Period size: 43 Copynumber: 2.9 Consensus size: 44
71925669 AACTCGTACA
* * *** *
71925679 ATGCC-ATATCCCAGATATGGTCTTACATGTTCTCAC-AT-ATCA
1 ATGCCAATATCCCAGACAGGGTCTTACATGAAATCACAATAAT-G
*
71925721 ATGCCATTATCCCAGACAGGGTCTTACATGAAATCA-AATAATG
1 ATGCCAATATCCCAGACAGGGTCTTACATGAAATCACAATAATG
* ** *
71925764 ATGCCAATGTCCCAGACATTGTCTTACATGCAATCACAATA
1 ATGCCAATATCCCAGACAGGGTCTTACATGAAATCACAATA
71925805 CAATGGCAAT
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 5 0.07
43 57 0.84
44 6 0.09
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (44 bp):
ATGCCAATATCCCAGACAGGGTCTTACATGAAATCACAATAATG
Found at i:71925815 original size:43 final size:42
Alignment explanation
Indices: 71925721--71925842 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 42
71925711 TCACATATCA
* * *
71925721 ATGCCATTATCCCAGACAGGGTCTTACATGAAATCAAATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATAA-G
* *
71925764 ATGCCAATGTCCCAGACATTGTCTTACATGCAATCACAATACA-
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA-AATA-AG
* * * *
71925807 ATGGCAATGTTCCAAACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
71925843 TATCTCGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 62 0.93
44 4 0.06
45 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATAAG
Found at i:71936357 original size:22 final size:22
Alignment explanation
Indices: 71936332--71936377 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
71936322 AGTTCAGTAA
71936332 GTGTGAGTTCTAGTTAAGAGAG
1 GTGTGAGTTCTAGTTAAGAGAG
71936354 GTGTGAGTTCTAGTTAAGAGAG
1 GTGTGAGTTCTAGTTAAGAGAG
71936376 GT
1 GT
71936378 TAGCTTCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.37, T:0.33
Consensus pattern (22 bp):
GTGTGAGTTCTAGTTAAGAGAG
Found at i:71938297 original size:37 final size:37
Alignment explanation
Indices: 71938238--71938308 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
71938228 AGCTCAAATG
* *
71938238 AAATCTCCATACGAAGTTATCGGGTCTTACCCGGTCA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGTCA
*
71938275 AAATCTCCACACGTAGTCATCGGGTCTTACCCGG
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGG
71938309 AATATATTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGTCA
Found at i:71938511 original size:48 final size:48
Alignment explanation
Indices: 71938456--71939026 Score: 914
Period size: 48 Copynumber: 12.1 Consensus size: 48
71938446 ACACATCGCC
*
71938456 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
71938504 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
71938554 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
71938602 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
71938650 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
71938698 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
71938746 TACATATTTCACATTAACCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
71938794 TACATATTTCACATTAGCCATTCGACTTTGCCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
71938842 TACATATTTCACATTAGCCATTCGG------CAC---T---TATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
71938878 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
71938926 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
71938974 TACATATTTCACATTAGCCATTCGGCTTTACCATATATAAATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
71939022 TACAT
1 TACAT
71939027 CAATTTCCGC
Statistics
Matches: 492, Mismatches: 17, Indels: 28
0.92 0.03 0.05
Matches are distributed among these distances:
36 31 0.06
39 1 0.00
42 6 0.01
45 1 0.00
48 407 0.83
50 46 0.09
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:71938879 original size:36 final size:36
Alignment explanation
Indices: 71938832--71938900 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
71938822 TGCCACATAT
71938832 ACTTATCTCATACATATTTCACATTAGCCATTCGGC
1 ACTTATCTCATACATATTTCACATTAGCCATTCGGC
71938868 ACTTATCTCATACATATTTCACATTAGCCATTC
1 ACTTATCTCATACATATTTCACATTAGCCATTC
71938901 AGCTTTACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.28, G:0.06, T:0.38
Consensus pattern (36 bp):
ACTTATCTCATACATATTTCACATTAGCCATTCGGC
Found at i:71938925 original size:84 final size:84
Alignment explanation
Indices: 71938784--71938951 Score: 302
Period size: 84 Copynumber: 2.0 Consensus size: 84
71938774 TACCACATAT
* *
71938784 ACTTATCTCATACATATTTCACATTAGCCATTCGACTTTGCCACATATACTTATCTCATACATAT
1 ACTTATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATAT
71938849 TTCACATTAGCCATTCGGC
66 TTCACATTAGCCATTCGGC
71938868 ACTTATCTCATACATATTTCACATTAGCCATTC-AGCTTTACCACATATACATATCTCATACATA
1 ACTTATCTCATACATATTTCACATTAGCCATTCGA-CTTTACCACATATACATATCTCATACATA
71938932 TTTCACATTAGCCATTCGGC
65 TTTCACATTAGCCATTCGGC
71938952 TTTACCACAT
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
83 1 0.01
84 80 0.99
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (84 bp):
ACTTATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATAT
TTCACATTAGCCATTCGGC
Found at i:71938973 original size:132 final size:132
Alignment explanation
Indices: 71938736--71938999 Score: 483
Period size: 132 Copynumber: 2.0 Consensus size: 132
71938726 TACCACATAT
* *
71938736 ACTTATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATATACTTATCTCATACATAT
1 ACTTATCTCATACATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATACATAT
*
71938801 TTCACATTAGCCATTCGACTTTGCCACATATACTTATCTCATACATATTTCACATTAGCCATTCG
66 TTCACATTAGCCATTCGACTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCG
71938866 GC
131 GC
*
71938868 ACTTATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATAT
1 ACTTATCTCATACATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATACATAT
*
71938933 TTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCG
66 TTCACATTAGCCATTCGACTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCG
71938998 GC
131 GC
71939000 TTTACCATAT
Statistics
Matches: 127, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 127 1.00
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (132 bp):
ACTTATCTCATACATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATACATAT
TTCACATTAGCCATTCGACTTTACCACATATACTTATCTCATACATATTTCACATTAGCCATTCG
GC
Found at i:71946283 original size:43 final size:43
Alignment explanation
Indices: 71946236--71946390 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 43
71946226 TCCCAGATAT
* * *
71946236 GGTCTTACATGTTATCACATATCGATGCCACTGTCCCAAACAG
1 GGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACAA
* * *
71946279 GGTCTTACACT-AAATAAAATAAT-GATGCCAATGTCCCAAA-AA
1 GGTCTTACA-TGTAATCACAT-ATCGATGCCAATGTCCCAAACAA
* ** * *
71946321 TGGTCTTACACGTAATCACAGTA-AAATGCCAATATCCCAGACAA
1 -GGTCTTACATGTAATCACA-TATCGATGCCAATGTCCCAAACAA
*
71946365 GGTCTTACATGTAATCACATCTCGAT
1 GGTCTTACATGTAATCACATATCGAT
71946391 AACCTAATGT
Statistics
Matches: 87, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 79 0.91
44 6 0.07
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACAA
Found at i:71946620 original size:47 final size:47
Alignment explanation
Indices: 71946551--71946645 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
71946541 AGACATTTAT
* *
71946551 TTGCATATGAACTTACCTCGTATTATGGATTGACGTATCGGGTTGAC
1 TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
71946598 TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
1 TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
71946645 T
1 T
71946646 ATTCGACAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (47 bp):
TTGCATATGAACTTACCTCGTATTACGGATTGACGTATCGGGTCGAC
Found at i:71953527 original size:66 final size:66
Alignment explanation
Indices: 71953446--71953578 Score: 178
Period size: 66 Copynumber: 2.0 Consensus size: 66
71953436 GCAAATTGCT
* * * * *
71953446 CAACTTAAGGCAGAGGTAGCATCGAGAGAAGCAGAGGC-TCAAAGAAAATATGATGAACTCTAGC
1 CAACTTAAAGCAGAGGTAGCAGCGAGAGAAGCAGAGGCAAC-AAGAAAATATGACGAACTCCAGC
71953510 TA
65 TA
* * *
71953512 CAACTTAAAGCAGAGGTAGGAGCGAGGGAAGTAGAGGCAACAAGAAAATATGACGAACTCCAGCT
1 CAACTTAAAGCAGAGGTAGCAGCGAGAGAAGCAGAGGCAACAAGAAAATATGACGAACTCCAGCT
71953577 A
66 A
71953578 C
1 C
71953579 CATTTCAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 57 0.98
67 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.27, T:0.14
Consensus pattern (66 bp):
CAACTTAAAGCAGAGGTAGCAGCGAGAGAAGCAGAGGCAACAAGAAAATATGACGAACTCCAGCT
A
Found at i:71953928 original size:43 final size:43
Alignment explanation
Indices: 71953893--71954013 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 43
71953883 TTAGTGGTAT
* **
71953893 TTTTACTATAAACGCCACTAAAGAACATGATCTTTAGCCACGC
1 TTTTACTAAAAACGCCACTAAAGAACATGATCTTTAGCGGCGC
* * * *
71953936 TTTTATTACAAACGGCACTATAGAACATGATCTTTAGCGGCGC
1 TTTTACTAAAAACGCCACTAAAGAACATGATCTTTAGCGGCGC
*
71953979 TTTTACTAAAAACGCCGCTAAAGAACATGATCTTT
1 TTTTACTAAAAACGCCACTAAAGAACATGATCTTT
71954014 TGTGTTGTTT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (43 bp):
TTTTACTAAAAACGCCACTAAAGAACATGATCTTTAGCGGCGC
Found at i:71954075 original size:42 final size:43
Alignment explanation
Indices: 71954020--71954102 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 43
71954010 CTTTTGTGTT
*
71954020 GTTTGTAAAAAAAGTGAC-ACTAAAAATCATGTTCTATAGCGAC
1 GTTTGTAAAAAAAGCG-CTACTAAAAATCATGTTCTATAGCGAC
* * *
71954063 GTTT-TAATAAAAGCGCTGCTAAAGATCATGTTCTATAGCG
1 GTTTGTAAAAAAAGCGCTACTAAAAATCATGTTCTATAGCG
71954103 GTGTTTTGCC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.03
42 30 0.86
43 4 0.11
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (43 bp):
GTTTGTAAAAAAAGCGCTACTAAAAATCATGTTCTATAGCGAC
Found at i:71955740 original size:8 final size:8
Alignment explanation
Indices: 71955727--71955751 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
71955717 CTGAAGTGTC
71955727 AAAATGTG
1 AAAATGTG
71955735 AAAATGTG
1 AAAATGTG
71955743 AAAATGTG
1 AAAATGTG
71955751 A
1 A
71955752 GGACTAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:71958651 original size:48 final size:48
Alignment explanation
Indices: 71958580--71958882 Score: 579
Period size: 48 Copynumber: 6.3 Consensus size: 48
71958570 AATTTGTTGT
71958580 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
71958628 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
71958676 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
71958724 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
71958772 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
71958820 AAATATGTGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
71958868 AAATATGTAAGAGAT
1 AAATATGTATGAGAT
71958883 GTGTGTATAT
Statistics
Matches: 250, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 250 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
Found at i:71959073 original size:37 final size:37
Alignment explanation
Indices: 71959023--71959125 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
71959013 GGAAATATAT
71959023 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
71959060 TCCGGGTAAGACCCGATGACTATGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71959097 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
71959126 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71959358 original size:37 final size:37
Alignment explanation
Indices: 71959308--71959408 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
71959298 GGAAATATAT
71959308 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
71959345 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
71959382 TCTGGGTAAGACCCGATAACTACGTGT
1 TCCGGGTAAGACCCGATGACTACGTGT
71959409 AGGGACTATT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71959370 original size:285 final size:285
Alignment explanation
Indices: 71958855--71959428 Score: 1094
Period size: 285 Copynumber: 2.0 Consensus size: 285
71958845 GGTAAAGCCG
*
71958855 AATGGCTAGTGTGAAATATGTAAGAGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGG
1 AATGCCTAGTGTGAAATATGTAAGAGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGG
71958920 TGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGT
66 TGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGT
71958985 AACATGTGATTAAATGTACATGAAACTTGGAAATATATTCCGGGTAAGACCCGATGACTACGTGT
131 AACATGTGATTAAATGTACATGAAACTTGGAAATATATTCCGGGTAAGACCCGATGACTACGTGT
71959050 GGAGATTATGTCCGGGTAAGACCCGATGACTATGTGTAGAGATTTTGTCCGGGTAAGACCCGATA
196 GGAGATTATGTCCGGGTAAGACCCGATGACTATGTGTAGAGATTTTGTCCGGGTAAGACCCGATA
*
71959115 ACTACGTGTGGGGACTATTCGAGCT
261 ACTACGTGTAGGGACTATTCGAGCT
*
71959140 AATGCCTAGTGTGAAATATGTAGGAGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGG
1 AATGCCTAGTGTGAAATATGTAAGAGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGG
71959205 TGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGT
66 TGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGT
*
71959270 AACATGTGATTAAATGTTCATGAAACTTGGAAATATATTCCGGGTAAGACCCGATGACTACGTGT
131 AACATGTGATTAAATGTACATGAAACTTGGAAATATATTCCGGGTAAGACCCGATGACTACGTGT
* *
71959335 GGAGATTATGTCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTGTCTGGGTAAGACCCGATA
196 GGAGATTATGTCCGGGTAAGACCCGATGACTATGTGTAGAGATTTTGTCCGGGTAAGACCCGATA
71959400 ACTACGTGTAGGGACTATTCGAGCT
261 ACTACGTGTAGGGACTATTCGAGCT
71959425 AATG
1 AATG
71959429 GTTTCGCTGA
Statistics
Matches: 283, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
285 283 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (285 bp):
AATGCCTAGTGTGAAATATGTAAGAGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGG
TGTGTATTATTAGATATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGT
AACATGTGATTAAATGTACATGAAACTTGGAAATATATTCCGGGTAAGACCCGATGACTACGTGT
GGAGATTATGTCCGGGTAAGACCCGATGACTATGTGTAGAGATTTTGTCCGGGTAAGACCCGATA
ACTACGTGTAGGGACTATTCGAGCT
Found at i:71962644 original size:47 final size:47
Alignment explanation
Indices: 71962590--71962747 Score: 273
Period size: 47 Copynumber: 3.4 Consensus size: 47
71962580 TGCTCAAATT
71962590 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTT-CGAG
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCG-G
*
71962637 ATAAGTTACTTAGTTAAGCTTGTTTAGTTTGTTCTTAATATTTCCGG
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
* *
71962684 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGCTCTTAATATTTCCGC
1 ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
71962731 ATAAGTTACTTAGTTAA
1 ATAAGTTACTTAGTTAA
71962748 AGAAAATTTT
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
47 104 0.98
48 2 0.02
ACGTcount: A:0.27, C:0.11, G:0.15, T:0.47
Consensus pattern (47 bp):
ATAAGTTACTTAGTTAAGCTTGTTTAATTTGTTCTTAATATTTCCGG
Found at i:71963675 original size:46 final size:45
Alignment explanation
Indices: 71963549--71963683 Score: 209
Period size: 45 Copynumber: 3.0 Consensus size: 45
71963539 ATATCACACA
*
71963549 ATACTATTCGGGCCTTTGAGCCTAGCAGGCAATAATG-TCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCT-GGTGAG
*
71963594 ATACTATTCGGACCTTTGAGCCTAGCAGGCTATAATGCTGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAG
* *
71963639 ATACTATTTGGGCCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 ATACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCTGGTGA
71963684 TTTGATAAAA
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
45 56 0.67
46 27 0.33
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAG
Found at i:71980511 original size:24 final size:24
Alignment explanation
Indices: 71980484--71980531 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
71980474 GAAAATGTAT
71980484 ATTTTAAAGTATGGCATGTATAGA
1 ATTTTAAAGTATGGCATGTATAGA
71980508 ATTTTAAAGTATGGCATGTATAGA
1 ATTTTAAAGTATGGCATGTATAGA
71980532 CTAGTAGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.38
Consensus pattern (24 bp):
ATTTTAAAGTATGGCATGTATAGA
Found at i:71984398 original size:43 final size:42
Alignment explanation
Indices: 71984349--71984486 Score: 145
Period size: 43 Copynumber: 3.2 Consensus size: 42
71984339 CGTCCTGACG
*
71984349 TGGTCTTACATGTAATTCAATAACGATGCCTCTGTCCCAGACA
1 TGGTCTTACATGTAATTCAAT-ACGATGCCTATGTCCCAGACA
* * *
71984392 GGGTCTTACATGAAATT-AGATACGATGCCGATGTCCCAGACA
1 TGGTCTTACATGTAATTCA-ATACGATGCCTATGTCCCAGACA
* * * * *
71984434 TGGTCTTATACGTAAATCTCAATA-GAGGCCTGTGTCCTAGACA
1 TGGTCTTACATGT-AAT-TCAATACGATGCCTATGTCCCAGACA
71984477 TGGTCTTACA
1 TGGTCTTACA
71984487 CGATGTCTCA
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.37
43 44 0.56
44 4 0.05
45 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (42 bp):
TGGTCTTACATGTAATTCAATACGATGCCTATGTCCCAGACA
Found at i:71984418 original size:42 final size:43
Alignment explanation
Indices: 71984350--71984441 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 43
71984340 GTCCTGACGT
* **
71984350 GGTCTTACATGTAATTCAATAACGATGCCTCTGTCCCAGACAG
1 GGTCTTACATGAAATTCAATAACGATGCCGATGTCCCAGACAG
*
71984393 GGTCTTACATGAAATT-AGAT-ACGATGCCGATGTCCCAGACAT
1 GGTCTTACATGAAATTCA-ATAACGATGCCGATGTCCCAGACAG
71984435 GGTCTTA
1 GGTCTTA
71984442 TACGTAAATC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 27 0.61
43 17 0.39
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGAAATTCAATAACGATGCCGATGTCCCAGACAG
Found at i:71988928 original size:25 final size:25
Alignment explanation
Indices: 71988897--71988968 Score: 101
Period size: 25 Copynumber: 2.9 Consensus size: 25
71988887 AACTAGAATT
* *
71988897 AGAATCAAAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGGTAAC
* *
71988922 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGGTAAC
71988947 AGAATCAAAATCAGAATC-GGTA
1 AGAATCAAAATCAGAATCAGGTA
71988969 TCAGGTAACG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 4 0.10
25 37 0.90
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAAAATCAGAATCAGGTAAC
Found at i:71988959 original size:31 final size:31
Alignment explanation
Indices: 71988924--71988994 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
71988914 TAGGTGACAG
71988924 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
* *
71988955 AATCAGAATCGGTATCAGGTAACGGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
71988986 AATCAGAAT
1 AATCAGAAT
71988995 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:71989427 original size:27 final size:27
Alignment explanation
Indices: 71989396--71989591 Score: 178
Period size: 27 Copynumber: 7.3 Consensus size: 27
71989386 GGGGCAAAAT
*
71989396 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * * *
71989423 TGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
71989450 GGT-ATTTCTACCCTACAAGGGTATCTC
1 GGTAATTT-TACCCTACAAGGGTATCTC
* * * * * *
71989477 GGTCATTCTACCCTACAGGGGCATTTT
1 GGTAATTTTACCCTACAAGGGTATCTC
* * *
71989504 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * * *
71989531 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * * *
71989558 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
71989585 GGTAATT
1 GGTAATT
71989592 ACACCAAGTA
Statistics
Matches: 148, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.02
27 142 0.96
28 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATCTC
Found at i:71989462 original size:54 final size:54
Alignment explanation
Indices: 71989400--71989591 Score: 262
Period size: 54 Copynumber: 3.6 Consensus size: 54
71989390 CAAAATGGTA
* *
71989400 ATTT-TACCCCACAAGGGTATCTCTGTAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * *
71989453 ATTTCTACCCTACAAGGGTATCTCGGTCATTCTACCCTACAGGGGCATTTTGGT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * *
71989507 AATTCTACCCTACAGGGGTATTTCGGTTATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* *
71989561 -TATTCTACCCTACAGGGGTATTTCGGTAATT
1 AT-TTCTACCCTACAAGGGTATCTCGGTAATT
71989592 ACACCAAGTA
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
53 4 0.03
54 120 0.97
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.35
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:71989540 original size:81 final size:81
Alignment explanation
Indices: 71989424--71989591 Score: 275
Period size: 81 Copynumber: 2.1 Consensus size: 81
71989414 GGGTATCTCT
71989424 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATCTCGGTCATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATCTCGGTCATTCTACC
*
71989489 CTACAGGGGCATTTTG
66 CTACAGGGGCATTTCG
* * *
71989505 GTAATTCTACCCTACAGGGGTATTTCGGT-TATTCTACCCTACAGGGGTATTTCGGTTATTCTAC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAT-TTCTACCCTACAAGGGTATCTCGGTCATTCTAC
*
71989569 CCTACAGGGGTATTTCG
65 CCTACAGGGGCATTTCG
71989586 GTAATT
1 GTAATT
71989592 ACACCAAGTA
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
80 1 0.01
81 80 0.99
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATCTCGGTCATTCTACC
CTACAGGGGCATTTCG
Found at i:71989661 original size:27 final size:27
Alignment explanation
Indices: 71989603--71989691 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
71989593 CACCAAGTAG
71989603 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *** * *
71989630 TGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* **
71989657 GGGTATTTTTGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
71989684 GGGTATTT
1 GGGTATTT
71989692 CAATAATTTT
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.27, C:0.07, G:0.21, T:0.45
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:71989713 original size:54 final size:54
Alignment explanation
Indices: 71989603--71989715 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
71989593 CACCAAGTAG
* *** *
71989603 GGGTATTTTGGTAATTTTACAAACCAATGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATTCATCGA
* ** *
71989657 GGGTATTTTTGTAATTTTGTAAACCAAGGGTATTTCAATAATTTT-TTACATTGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATT-CATCGA
71989711 GGGTA
1 GGGTA
71989716 AAATGGTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.04
54 47 0.96
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.44
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATTCATCGA
Found at i:71989725 original size:27 final size:27
Alignment explanation
Indices: 71989709--71989909 Score: 267
Period size: 27 Copynumber: 7.4 Consensus size: 27
71989699 TTTTTACATT
* *
71989709 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* * *
71989736 GAGGGTAAGACAGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
*
71989763 GAGGGTAAAATAGTAATTTTATAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
* * *
71989790 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
71989817 GAGGGTAAAAATAGTAATTCTATAAATC
1 GAGGGT-AAAATAGTAATTCTATAAATC
**
71989845 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAATAGTAATTCTATAAATC
*
71989872 GAGGGTAAAAATAGTAATTCTACAAATC
1 GAGGGT-AAAATAGTAATTCTATAAATC
*
71989900 AAGGGTAAAA
1 GAGGGTAAAA
71989910 CGATAATTGG
Statistics
Matches: 154, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
27 107 0.69
28 47 0.31
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATAGTAATTCTATAAATC
Found at i:71989725 original size:54 final size:54
Alignment explanation
Indices: 71989667--71989917 Score: 214
Period size: 55 Copynumber: 4.6 Consensus size: 54
71989657 GGGTATTTTT
* * *** * * * * *
71989667 GTAATTTTGTAAACCAAGGGTATTTCAATAATTTTTTACATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAGACAATAATTCTGTAAATCGAGGGTAAAATA
* *
71989721 GTAATTCTGTAAATCGAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAGACAATAATTCTGTAAATCGAGGGTAAAATA
* * *** *
71989775 GTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAGACAATAATTCTGTAAATCGAGGGT-AAAATA
* * * ** *
71989830 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAGACAATAATTCTGTAAATCGAGGGT-AAAATA
* ** * * *
71989885 GTAATTCTACAAATCAAGGGTAAAACGATAATT
1 GTAATTTTGTAAATCGAGGGTAAGACAATAATT
71989918 GGGTAATTTT
Statistics
Matches: 171, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
54 84 0.49
55 87 0.51
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAGACAATAATTCTGTAAATCGAGGGTAAAATA
Found at i:71989737 original size:81 final size:81
Alignment explanation
Indices: 71989667--71989907 Score: 241
Period size: 81 Copynumber: 3.0 Consensus size: 81
71989657 GGGTATTTTT
* ** * * *
71989667 GTAATTTTGTAAACCAAGGGT-ATTTCAATAATTTTTTACATTGAGGGTAAAATGGTAATTCTGT
1 GTAATTCTGTAAACCAAGGGTAAAAT-AATAATTTTATAAATCGAGGGTAAAATGGTAATTCTGT
71989731 AAATCGAGGGTAAGACA
65 AAATCGAGGGTAAGACA
* * * *
71989748 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
* *
71989813 AATCGAGGGTAAAAATA
66 AATCGAGGGT-AAGACA
* * * *** * * **
71989830 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAATAGTAATTCTAC
1 GTAATTCTGTAAACCAAGGGTAAAATAATAATTTTATAAATCGAGGGT-AAAATGGTAATTCTGT
*
71989895 AAATCAAGGGTAA
65 AAATCGAGGGTAA
71989908 AACGATAATT
Statistics
Matches: 136, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
81 62 0.46
82 52 0.38
83 22 0.16
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GTAATTCTGTAAACCAAGGGTAAAATAATAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAGACA
Found at i:71989851 original size:55 final size:54
Alignment explanation
Indices: 71989709--71989917 Score: 301
Period size: 55 Copynumber: 3.8 Consensus size: 54
71989699 TTTTTACATT
* * * *
71989709 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACAGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
* * *
71989763 GAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
*
71989817 GAGGGTAAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGT-AAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
* * *
71989872 GAGGGTAAAAATAGTAATTCTACAAATCAAGGGTAAAACGATAATT
1 GAGGGT-AAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATT
71989918 GGGTAATTTT
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 53 0.38
55 87 0.62
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (54 bp):
GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
Found at i:71989917 original size:82 final size:81
Alignment explanation
Indices: 71989709--71989910 Score: 287
Period size: 82 Copynumber: 2.5 Consensus size: 81
71989699 TTTTTACATT
* * *
71989709 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAAT
1 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
*
71989774 AGTAATTTTATAAATC
66 AGTAATTCTATAAATC
* *
71989790 GAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAATAGTAATTCTATAAATCGAGGGTAAAA
1 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGT-AAAACAGTAATTCTATAAATCGAGGGTAAAA
*
71989855 CGGTAATTCTATAAATC
65 CAGTAATTCTATAAATC
* ** *
71989872 GAGGGTAAAAATAGTAATTCTACAAATCAAGGGTAAAAC
1 GAGGGT-AAAATGGTAATTCTGTAAATCGAGGGTAAAAC
71989911 GATAATTGGG
Statistics
Matches: 106, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
81 32 0.30
82 52 0.49
83 22 0.21
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
AGTAATTCTATAAATC
Found at i:71989959 original size:27 final size:27
Alignment explanation
Indices: 71989920--71990061 Score: 153
Period size: 27 Copynumber: 5.3 Consensus size: 27
71989910 CGATAATTGG
71989920 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* * *
71989947 GTAATTTTGCAAA-CTGATGGTATTTCT
1 GTAATTTTACAAATC-GAGGGTATTTCA
* **
71989974 GTAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTACAAATCGAGGGTATTTCA
* * *
71990001 GTAATTTTATAAATCGGGGGTACTTT-G
1 GTAATTTTACAAATCGAGGGTA-TTTCA
* *
71990028 GTAATTTTACAAGTTGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
71990055 GTAATTT
1 GTAATTT
71990062 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.04
27 87 0.92
28 4 0.04
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:71990051 original size:81 final size:81
Alignment explanation
Indices: 71989911--71990061 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
71989901 AGGGTAAAAC
* * *
71989911 GATAATTGGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGATGGTATTTCTGT
1 GATAATTGGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCAGT
71989976 AATTTTACAAATCGAG
66 AATTTTACAAATCGAG
* * * * **
71989992 GATATTTGGGTAATTTTATAAATCGGGGGTACTTT-GGTAATTTTACAAGTTGAGGGTATTTCAG
1 GATAATTGGGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAAACTGAGGGTATTTCAG
71990056 TAATTT
65 TAATTT
71990062 GGTAAACTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 57 0.95
82 3 0.05
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (81 bp):
GATAATTGGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGAGGGTATTTCAGT
AATTTTACAAATCGAG
Found at i:71992355 original size:28 final size:28
Alignment explanation
Indices: 71992275--71992355 Score: 85
Period size: 28 Copynumber: 2.9 Consensus size: 28
71992265 TGTGAATCTT
* *
71992275 GCACTAAGTGTGCGAATGTGGT-TATTGA
1 GCACTAAGTGTGCGAAT-TGTTATATTAA
* *
71992303 GCACTAAGTGTGCGAGTT-TAAATATTAA
1 GCACTAAGTGTGCGAATTGT-TATATTAA
*
71992331 GCACTAAGTGTGCAAATTGTTATAT
1 GCACTAAGTGTGCGAATTGTTATAT
71992356 ATTTTCCGAG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.02
28 41 0.95
29 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAATTGTTATATTAA
Found at i:72005556 original size:20 final size:20
Alignment explanation
Indices: 72005526--72005570 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
72005516 CTGTTTTATT
72005526 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
72005545 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
72005565 ATGGGC
1 ATGGGC
72005571 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:72005723 original size:62 final size:61
Alignment explanation
Indices: 72005591--72005735 Score: 154
Period size: 61 Copynumber: 2.4 Consensus size: 61
72005581 ATATCTCGAC
* * * * *
72005591 TTGTAATAGGGC-TACGGCCTAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTTA-GGCCCAGATTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
*
72005652 TTGTAATAGGG-TTATGGCCCAGATTAATACTGATGTGGGCTAAGGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTTA-GGCCCAGATTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATA
*
72005713 TTCTGAATAGGGCTTAGGCCCAG
1 TTGT-AATAGGGCTTAGGCCCAG
72005736 TAAAGCTTGA
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
61 39 0.55
62 29 0.41
63 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (61 bp):
TTGTAATAGGGCTTAGGCCCAGATTAATACTGATATGGGCTAGGCCCAGTATACACTGATA
Found at i:72011513 original size:29 final size:29
Alignment explanation
Indices: 72011474--72011552 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72011464 CTTAATAATC
*
72011474 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72011504 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72011533 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72011553 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72014869 original size:40 final size:40
Alignment explanation
Indices: 72014775--72014919 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
72014765 TACTCGAATG
*
72014775 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
72014816 ACATCCAGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
72014856 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
72014896 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
72014920 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:72017169 original size:47 final size:47
Alignment explanation
Indices: 72017084--72017204 Score: 152
Period size: 47 Copynumber: 2.6 Consensus size: 47
72017074 CTTCGGGACT
* * * * *
72017084 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * * *
72017131 TGTTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
*
72017178 TATCACATATATACACTTTCACTTTCA
1 TATCACATATATACACTTTCACATTCA
72017205 ATTTCTAATT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:72018040 original size:42 final size:42
Alignment explanation
Indices: 72017884--72018041 Score: 135
Period size: 42 Copynumber: 3.7 Consensus size: 42
72017874 TATGAGTTTT
* * *
72017884 CGTGTAAGACCATGTCTGAGACGTTGGCATCGATTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATAT-TGA-TTA
* * * * *
72017928 CGTGTAAGACTATGTTTGGGACATCGGCATC-ATATTTGATCT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATA-TTGAT-TA
*
72017970 CGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATTA
* *
72018012 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
72018042 TGTACAAGCT
Statistics
Matches: 91, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.02
42 52 0.57
43 10 0.11
44 27 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTA
Found at i:72031146 original size:16 final size:17
Alignment explanation
Indices: 72031115--72031147 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
72031105 TTAATAAGTA
72031115 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
72031132 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
72031148 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:72031494 original size:46 final size:46
Alignment explanation
Indices: 72031442--72031927 Score: 810
Period size: 46 Copynumber: 10.6 Consensus size: 46
72031432 TGTCATAGTG
* * * * *
72031442 TCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
*
72031488 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
*
72031534 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
* *
72031580 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGTTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
* *
72031626 TCTTTGAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
*
72031672 TCTTTCAACCATGGTCTTACACATTTTATATCTTGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
* * *
72031718 TCTTTCAACCATGATCTTACACATTTCATATCATGTTTCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
*
72031764 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
* *
72031810 TCTTTCAACCAAGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
72031856 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
72031902 TCTTTCAACCATGGTCTTACACATTT
1 TCTTTCAACCATGGTCTTACACATTT
72031928 CATTTCAAAA
Statistics
Matches: 409, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 409 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTA
Found at i:72033710 original size:46 final size:47
Alignment explanation
Indices: 72033606--72033725 Score: 134
Period size: 46 Copynumber: 2.5 Consensus size: 47
72033596 TCTTTGACAA
** * *
72033606 GGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAACAT
1 GGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAACAT
* * *
72033656 GGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGATAT
1 GGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAACAT
*
72033702 GGACTTACATGGCTCATTTCTGTC
1 GGACTTACATGGCTCATTCCTGTC
72033726 ATGTCCTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
46 33 0.54
50 28 0.46
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (47 bp):
GGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAACAT
Found at i:72038064 original size:46 final size:47
Alignment explanation
Indices: 72037958--72038080 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 47
72037948 TGTCTTCGAC
** * *
72037958 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
72038008 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
72038054 ATGGACTTACATGGCTCATTTCTGTCT
1 ATGGACTTACATGGCTCATTCCTGTCT
72038081 GTCCTGTCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
46 35 0.54
50 30 0.46
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:72047200 original size:46 final size:46
Alignment explanation
Indices: 72047095--72047261 Score: 201
Period size: 46 Copynumber: 3.5 Consensus size: 46
72047085 TTTGACATGA
* * * *
72047095 TGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA----TTC-TTTTCATGTCAAGT
* * *
72047145 TGCCATGGTATCTTGCAACCATGGTCTTATTCTTTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAAGT
* *
72047191 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAAGT
72047237 TGCCATGGTATCTTTCAACCATGGT
1 TGCCATGGTATCTTTCAACCATGGT
72047262 GTTACACATT
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
45 5 0.05
46 75 0.71
50 25 0.24
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAAGT
Found at i:72047272 original size:46 final size:46
Alignment explanation
Indices: 72047143--72047279 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
72047133 TTTCTGTCAT
* * * *
72047143 GTTGCCATGGTATCTTGCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
*
72047189 GCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
* **
72047235 GTTGCCATGGTATCTTTCAACCATGGTGTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
72047280 GAGAGCACAC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAA
Found at i:72049309 original size:21 final size:22
Alignment explanation
Indices: 72049285--72049334 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
72049275 AAATCCCAAT
72049285 TTTTCCCTTT-TTCCTTCTTTC
1 TTTTCCCTTTCTTCCTTCTTTC
*
72049306 TTTT--TTTTCCTTCCTTCTTTC
1 TTTTCCCTTT-CTTCCTTCTTTC
*
72049327 TTTCCCCT
1 TTTTCCCT
72049335 GCTCTCTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
19 3 0.14
21 18 0.82
23 1 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTCCCTTTCTTCCTTCTTTC
Found at i:72049314 original size:17 final size:17
Alignment explanation
Indices: 72049292--72049325 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
72049282 AATTTTTCCC
*
72049292 TTTTTCCTTCTTTCTTT
1 TTTTTCCTTCCTTCTTT
72049309 TTTTTCCTTCCTTCTTT
1 TTTTTCCTTCCTTCTTT
72049326 CTTTCCCCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCCTTCCTTCTTT
Found at i:72049391 original size:16 final size:17
Alignment explanation
Indices: 72049360--72049405 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
72049350 TCATCCTTTC
*
72049360 TTTCTTTTTCTATTCTT
1 TTTCTTTTTATATTCTT
72049377 TTTCTTTTTAT-TTCTT
1 TTTCTTTTTATATTCTT
* *
72049393 TTACTTTATATAT
1 TTTCTTTTTATAT
72049406 ATTATAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTCTTTTTATATTCTT
Found at i:72049394 original size:10 final size:10
Alignment explanation
Indices: 72049356--72049393 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
72049346 CATTTCATCC
72049356 TTTCTTTCTT
1 TTTCTTTCTT
72049366 TTTCTATTCTT
1 TTTCT-TTCTT
72049377 TTTCTTT-TT
1 TTTCTTTCTT
72049386 ATTTCTTT
1 -TTTCTTT
72049394 TACTTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:72053748 original size:44 final size:46
Alignment explanation
Indices: 72053675--72053765 Score: 125
Period size: 44 Copynumber: 2.0 Consensus size: 46
72053665 TAAGATCCGA
*
72053675 TATGTGTTTTCGTGTAAGACCACGTCTGGGACA-CTGGCATCG-ATT
1 TATGTGTTTACGTGTAAGACCACGTCTGGGACATC-GGCATCGTATT
**
72053720 TATG-GTTTACGTGTAAGACCATTTCTGGGACATCGGCATCGTATT
1 TATGTGTTTACGTGTAAGACCACGTCTGGGACATCGGCATCGTATT
72053765 T
1 T
72053766 GATCTCGTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
44 32 0.78
45 9 0.22
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (46 bp):
TATGTGTTTACGTGTAAGACCACGTCTGGGACATCGGCATCGTATT
Found at i:72053810 original size:42 final size:42
Alignment explanation
Indices: 72053726--72053824 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 42
72053716 GATTTATGGT
* *
72053726 TTACGTGTAAGACCATTTCTGGGACATCGGCATCGTATTTGA
1 TTACGTGTAAGACCATATCTGGGACATCAGCATCGTATTTGA
* *
72053768 TCT-CGTGTAAGACCCTATCTGGGACAGT-AGCATTG-ATATTGA
1 T-TACGTGTAAGACCATATCTGGGACA-TCAGCATCGTAT-TTGA
*
72053810 TTACATGTAAGACCA
1 TTACGTGTAAGACCA
72053825 CGTTTGGGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
41 3 0.06
42 42 0.89
43 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATATCTGGGACATCAGCATCGTATTTGA
Found at i:72055933 original size:24 final size:24
Alignment explanation
Indices: 72055901--72055951 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
72055891 GTAGATCGGC
*
72055901 AAATCCCGAAATGCTAAAAAGCCA
1 AAATCCCGAAAAGCTAAAAAGCCA
* * *
72055925 AAATGCCGAAAAGCTGAAATGCCA
1 AAATCCCGAAAAGCTAAAAAGCCA
72055949 AAA
1 AAA
72055952 AGTTGAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.22, G:0.16, T:0.12
Consensus pattern (24 bp):
AAATCCCGAAAAGCTAAAAAGCCA
Found at i:72055958 original size:16 final size:16
Alignment explanation
Indices: 72055908--72055959 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
72055898 GGCAAATCCC
* *
72055908 GAAATGCTAAAAAGCC
1 GAAATGCCAAAAAGCT
* *
72055924 AAAATGCCGAAAAGCT
1 GAAATGCCAAAAAGCT
*
72055940 GAAATGCCAAAAAGTT
1 GAAATGCCAAAAAGCT
72055956 GAAA
1 GAAA
72055960 GTTTAGCTAC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.52, C:0.15, G:0.19, T:0.13
Consensus pattern (16 bp):
GAAATGCCAAAAAGCT
Found at i:72056213 original size:29 final size:29
Alignment explanation
Indices: 72056171--72056295 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
72056161 GAAAGCATGA
72056171 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72056200 ATATGAACGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
72056229 ATACGAATGTGATTTGGGCCTAATGCGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* **
72056258 ATATGAATGAGA-TTGGGCCTAGCGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72056286 ATATGCATGT
1 ATATGAATGT
72056296 TTGTAGACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.24
29 63 0.76
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:72059028 original size:33 final size:33
Alignment explanation
Indices: 72058986--72059060 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
72058976 AAAATACCTA
72058986 ATGTTCATAAGTACATGTTAGAGTGTGAATTTG
1 ATGTTCATAAGTACATGTTAGAGTGTGAATTTG
72059019 ATGTTCATAAGTACATGTTAGAGTGTGAATTTG
1 ATGTTCATAAGTACATGTTAGAGTGTGAATTTG
72059052 ATG-TCATAA
1 ATGTTCATAA
72059061 AACCTAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 6 0.14
33 36 0.86
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.39
Consensus pattern (33 bp):
ATGTTCATAAGTACATGTTAGAGTGTGAATTTG
Found at i:72059918 original size:50 final size:49
Alignment explanation
Indices: 72059748--72059979 Score: 248
Period size: 49 Copynumber: 4.7 Consensus size: 49
72059738 TCTATTGTGA
*
72059748 GGTCACGTGTGTAGTACTAAGTGCAGGCAACTACATGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
* * * *** *
72059797 GGTCGCATGTGTAGTACTAAGTCCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAA-TT
* * * *** **
72059847 CGATCACGTGTGTAGTGCTAAGTGTAGGCTACTACATGTATTAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
* *
72059897 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
* * *
72059947 GGTCGCATGTGTAATACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
72059980 GACGTACCAG
Statistics
Matches: 148, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
49 68 0.46
50 47 0.32
51 33 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
Found at i:72065307 original size:27 final size:27
Alignment explanation
Indices: 72065272--72065325 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72065262 TGTCATATGA
*
72065272 AATTGAATGGAAAATTATTATCACATG
1 AATTGAATGGAAAATTACTATCACATG
** *
72065299 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATCACATG
72065326 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATCACATG
Found at i:72069127 original size:17 final size:17
Alignment explanation
Indices: 72069105--72069140 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
72069095 GATCACTCTG
72069105 TCCCTCACTTCTTCTAA
1 TCCCTCACTTCTTCTAA
72069122 TCCCTCACTTCTTCTAA
1 TCCCTCACTTCTTCTAA
72069139 TC
1 TC
72069141 AGTTTTGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.42, G:0.00, T:0.42
Consensus pattern (17 bp):
TCCCTCACTTCTTCTAA
Found at i:72069532 original size:8 final size:8
Alignment explanation
Indices: 72069516--72069558 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
72069506 GTAGATTGGC
*
72069516 AAATCCCG
1 AAATGCCG
72069524 AAATGCCG
1 AAATGCCG
72069532 AAATGCCG
1 AAATGCCG
*
72069540 AAATGCCA
1 AAATGCCG
*
72069548 AAAAGCCG
1 AAATGCCG
72069556 AAA
1 AAA
72069559 GTTTGGCTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.47, C:0.26, G:0.19, T:0.09
Consensus pattern (8 bp):
AAATGCCG
Found at i:72077290 original size:55 final size:53
Alignment explanation
Indices: 72077195--72077349 Score: 147
Period size: 55 Copynumber: 2.9 Consensus size: 53
72077185 CGTGGTATCA
* ** * *
72077195 TTGCCTTAT-GAACTCACCAACACCATGCCTTGGCAAGGTCTTACATTGGACC
1 TTGCCTTATAGAACTCATCAATGCCATGCCTTGACATGGTCTTACATTGGACC
* *
72077247 TTTACCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACA-T-GATTTCC
1 -TTGCCTTATAG-AACTCATCAATGCCATGCCTTGACATGGTCTTACATTGGA---CC
* *
72077303 TTGCCTTGTAGAACTTATCAATGCCATGCCTT-AGCATGGTCTTACAT
1 TTGCCTTATAGAACTCATCAATGCCATGCCTTGA-CATGGTCTTACAT
72077350 GATATCCTTA
Statistics
Matches: 84, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
53 11 0.13
54 33 0.39
55 38 0.45
56 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (53 bp):
TTGCCTTATAGAACTCATCAATGCCATGCCTTGACATGGTCTTACATTGGACC
Found at i:72077341 original size:54 final size:55
Alignment explanation
Indices: 72077165--72077358 Score: 175
Period size: 54 Copynumber: 3.6 Consensus size: 55
72077155 TTACCATTGG
* * * * * * **
72077165 CATGTCTTGACATTGTCTTACGTGGTATCATTGCCTTAT-G-AACTCACCAACAC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGTAACTCATCAATGC
* * * *
72077218 CATGCCTTGGCAAGGTCTTACATTG-GA-CCTTTACCTTATAGTAACTCATCAATGC
1 CATGCCTTGACATGGTCTTACA-TGATATCC-TTGCCTTATAGTAACTCATCAATGC
* * * *
72077273 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG-AACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGTAACTCATCAATGC
72077327 CATGCCTT-AGCATGGTCTTACATGATATCCTT
1 CATGCCTTGA-CATGGTCTTACATGATATCCTT
72077359 ATCTTACCAA
Statistics
Matches: 113, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
52 1 0.01
53 27 0.24
54 45 0.40
55 38 0.34
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.36
Consensus pattern (55 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGTAACTCATCAATGC
Found at i:72089822 original size:27 final size:27
Alignment explanation
Indices: 72089792--72089950 Score: 165
Period size: 27 Copynumber: 5.9 Consensus size: 27
72089782 ATTACCAAAG
* *
72089792 TACCCCCGATTTACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
72089819 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
72089846 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
72089873 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCATTT
* ***
72089900 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCATTT
* *
72089927 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTACCA
72089951 AAATACCCTC
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:72089836 original size:54 final size:54
Alignment explanation
Indices: 72089779--72089960 Score: 175
Period size: 54 Copynumber: 3.4 Consensus size: 54
72089769 CTCAACTTGT
* * * * * *
72089779 AAAATTACCAAAGTACCCCCGATTTACATAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
* *** * *
72089833 AAAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
* * ** *** *
72089887 AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAATTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
*
72089941 AAAATTACCAAAATACCCTC
1 AAAATTACCAAATTACCCTC
72089961 AATCAGTAAA
Statistics
Matches: 102, Mismatches: 26, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.36
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
Found at i:72089953 original size:27 final size:27
Alignment explanation
Indices: 72089900--72090232 Score: 192
Period size: 27 Copynumber: 12.3 Consensus size: 27
72089890 ATTACTATTT
* * * *
72089900 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
72089927 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*** *
72089954 TACCC-TCAATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * * *
72089981 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
72090007 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
72090034 TACCCCTAGTTTGTAAAATTACCAACA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
72090061 TACCAC-TGGTTTGTGAAATTATCGAAA
1 TACC-CTTGGTTTATAAAATTACCAAAA
** * *
72090088 TACCCTTAATTTGTAAAATTACAAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
72090115 TA-CCTCTGATTTACAAAATTA-TAGAAA
1 TACCCT-TGGTTTATAAAATTACCA-AAA
* * *
72090142 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * **
72090171 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
72090198 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
72090225 CACCCTTG
1 TACCCTTG
72090233 TAGGGTGAAA
Statistics
Matches: 244, Mismatches: 52, Indels: 20
0.77 0.16 0.06
Matches are distributed among these distances:
26 25 0.10
27 188 0.77
28 11 0.05
29 20 0.08
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:72089958 original size:81 final size:81
Alignment explanation
Indices: 72089754--72089960 Score: 193
Period size: 81 Copynumber: 2.6 Consensus size: 81
72089744 TTAGTTTACC
* * * ** * * *
72089754 AATTATTGTAATACCCTCAACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCATTT
1 AATTATCGTAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTT
*
72089819 TACCCTCGATTTATAA
66 TACCCTCGATTTACAA
** * * * *** * *
72089835 AATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 AATTATCGTAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTT
72089900 TACCCTCGATTTACAA
66 TACCCTCGATTTACAA
* *
72089916 AATTA-C-TAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTC
1 AATTATCGT--AATACCCTCGATTTACAAAATTACCAAAATACCCTC
72089961 AATCAGTAAA
Statistics
Matches: 97, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 95 0.98
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.37
Consensus pattern (81 bp):
AATTATCGTAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTT
TACCCTCGATTTACAA
Found at i:72090025 original size:80 final size:80
Alignment explanation
Indices: 72089914--72090118 Score: 234
Period size: 80 Copynumber: 2.5 Consensus size: 80
72089904 CTCGATTTAC
**
72089914 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCAATCAGTAAAATTACCA
1 AAAATT-CTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-AATCAGTAAAATTACCA
72089978 AAATACC-CTGGTCTGT
64 AAATACCACTGGTCTGT
* * **
72089994 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATT-CTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAA
* *
72090059 CATACCACTGGTTTGT
65 AATACCACTGGTCTGT
* * * ** *
72090075 GAAATTATCGAAATACCCTTAATTTGTAAAATTACAAAAATACC
1 AAAATTCT-AAAATACCCTTGGTTTGTAAAATTACCAAAATACC
72090119 TCTGATTTAC
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
80 59 0.56
81 47 0.44
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAAA
ATACCACTGGTCTGT
Found at i:72090184 original size:56 final size:54
Alignment explanation
Indices: 72090076--72090205 Score: 156
Period size: 56 Copynumber: 2.4 Consensus size: 54
72090066 CTGGTTTGTG
*
72090076 AAATTATCGAAATACCCTT-AATTTGTAAAATTACAAAAATACCTCTGATTTACA
1 AAATTAT-GAAATACCCTTGAATTTCTAAAATTACAAAAATACCTCTGATTTACA
* * * *
72090130 AAATTATAGAAATACCCTTGACTTTCTAAAAATTATAGAAATACCAT-TGGTTTACA
1 AAATTAT-GAAATACCCTTGAATTTCT-AAAATTACAAAAATACC-TCTGATTTACA
72090186 AAATTACTGAAATACCCTTG
1 AAATTA-TGAAATACCCTTG
72090206 GTTTGTAGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
54 18 0.27
55 5 0.08
56 41 0.62
57 2 0.03
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (54 bp):
AAATTATGAAATACCCTTGAATTTCTAAAATTACAAAAATACCTCTGATTTACA
Found at i:72090293 original size:27 final size:27
Alignment explanation
Indices: 72090263--72090354 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
72090253 ACCCCTATTA
* *
72090263 GGTAAAAAGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
72090290 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
72090317 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
72090344 GGTAAAATGAC
1 GGTAAAATGAC
72090355 GAATATACCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:72090362 original size:27 final size:27
Alignment explanation
Indices: 72090226--72090364 Score: 97
Period size: 27 Copynumber: 5.1 Consensus size: 27
72090216 TTACCAAAAC
* * **
72090226 ACCCTTGTAGGGTGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACCGAAAT
* * *
72090253 ACCCCTATTA-GGTAAAAAGATCGTAAA-
1 ACCCCT-GTAGGGTAAAATGACCG-AAAT
* *
72090280 GCCCCTGTAGGGTAAAGTGACCGTAAA-
1 ACCCCTGTAGGGTAAAATGACCG-AAAT
* * *
72090307 GCCCCTGTAGGGTAAAGTGACCGTAAT
1 ACCCCTGTAGGGTAAAATGACCGAAAT
*
72090334 ACCCCTGTATGGTAAAATGA-CGAATAT
1 ACCCCTGTAGGGTAAAATGACCGAA-AT
72090361 ACCC
1 ACCC
72090365 TTATGTTCCG
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
26 7 0.08
27 78 0.87
28 5 0.06
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACCGAAAT
Found at i:72091190 original size:25 final size:24
Alignment explanation
Indices: 72091146--72091214 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 24
72091136 AGGAAGTGCT
* *
72091146 AAAAGGGCTATCCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* *
72091170 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
72091195 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
72091215 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:72091221 original size:23 final size:24
Alignment explanation
Indices: 72091146--72091227 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
72091136 AGGAAGTGCT
* * *
72091146 AAAAGGGCTATCCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
72091170 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
72091195 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
72091218 AAAAGAGGCT
1 AAAAG-GGCT
72091228 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
23 9 0.18
24 21 0.42
25 20 0.40
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:72091469 original size:31 final size:31
Alignment explanation
Indices: 72091433--72091604 Score: 272
Period size: 31 Copynumber: 5.5 Consensus size: 31
72091423 CGTTTACAGT
*
72091433 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72091464 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72091495 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
72091526 TAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
72091557 TAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72091588 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
72091605 AACCGTTAAA
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 131 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:72094399 original size:50 final size:50
Alignment explanation
Indices: 72094285--72094618 Score: 360
Period size: 50 Copynumber: 6.8 Consensus size: 50
72094275 GGTTATATAC
* * * ** ** *
72094285 GAGCTAGTGCAAGACCATGTTTGTAACATGGCATCGGCATTG-T-TATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
* * *
72094333 GAGCCAATGTAAGACCAAGTCTGGGACATGGCATTGGCACCGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
* * **
72094383 GAGCCAGTGTAGGACCATGTCTGGGACATGACATCAACACCGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
* * * *
72094433 GAGCTAGTGTAAGACCATGTCTGGGAACATGGCATCAGC-CTC-A-ATATGC
1 GAGCCAGTGTAAGACCATGTCTGGG-ACATGGCATCGGCAC-CGATGTATGA
* * * ** *
72094482 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTG-T-TATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
72094530 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
72094580 GAGCCAGTGTAAGACCATGTCAT-GGACATGGCATCGGCA
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCATCGGCA
72094619 TTTTTCCCTT
Statistics
Matches: 238, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
48 84 0.35
49 28 0.12
50 113 0.47
51 13 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGA
Found at i:72106135 original size:46 final size:46
Alignment explanation
Indices: 72106085--72106260 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
72106075 TGGTTGAGCA
*
72106085 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72106131 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
72106176 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
72106224 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72106261 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.58
47 27 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72108955 original size:13 final size:13
Alignment explanation
Indices: 72108937--72108965 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72108927 GGTTGTTTAT
72108937 TAAACTAATTAAC
1 TAAACTAATTAAC
72108950 TAAACTAATTAAC
1 TAAACTAATTAAC
72108963 TAA
1 TAA
72108966 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:72111894 original size:6 final size:6
Alignment explanation
Indices: 72111885--72111931 Score: 69
Period size: 6 Copynumber: 8.0 Consensus size: 6
72111875 AATAAAATTG
* *
72111885 AAATGA AAATAG AAATAA AAATAA AAATAA AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
72111932 GATAACAGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
5 5 0.14
6 32 0.86
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:72111899 original size:12 final size:12
Alignment explanation
Indices: 72111878--72111930 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
72111868 CAAAAATAAT
* *
72111878 AAAATTGAAATG
1 AAAATAGAAATA
72111890 AAAATAGAAATA
1 AAAATAGAAATA
*
72111902 AAAATAAAAATA
1 AAAATAGAAATA
72111914 AAAATA-AAATA
1 AAAATAGAAATA
72111925 AAAATA
1 AAAATA
72111931 AGATAACAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
11 11 0.29
12 27 0.71
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (12 bp):
AAAATAGAAATA
Found at i:72111916 original size:11 final size:11
Alignment explanation
Indices: 72111875--72111936 Score: 70
Period size: 11 Copynumber: 5.5 Consensus size: 11
72111865 TTTCAAAAAT
* *
72111875 AATAAAATTGA
1 AATAAAAATAA
*
72111886 AATGAAAATAGA
1 AATAAAAATA-A
72111898 AATAAAAATAAA
1 AATAAAAAT-AA
72111910 AATAAAAATAA
1 AATAAAAATAA
72111921 AATAAAAATAA
1 AATAAAAATAA
*
72111932 GATAA
1 AATAA
72111937 CAGGATTCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
11 24 0.55
12 19 0.43
13 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:72121995 original size:30 final size:30
Alignment explanation
Indices: 72121936--72122019 Score: 161
Period size: 30 Copynumber: 2.8 Consensus size: 30
72121926 CTGAATCTAA
72121936 ATCACCATACATCCAAGATACAT-TGCATT
1 ATCACCATACATCCAAGATACATATGCATT
72121965 ATCACCATACATCCAAGATACATATGCATT
1 ATCACCATACATCCAAGATACATATGCATT
72121995 ATCACCATACATCCAAGATACATAT
1 ATCACCATACATCCAAGATACATAT
72122020 ACAATGCAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 23 0.43
30 31 0.57
ACGTcount: A:0.40, C:0.27, G:0.06, T:0.26
Consensus pattern (30 bp):
ATCACCATACATCCAAGATACATATGCATT
Found at i:72128678 original size:5 final size:5
Alignment explanation
Indices: 72128668--72128700 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
72128658 CACTTAAAAA
72128668 TATTT TATTT T-TTT TATTT TATTT T-TTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT
72128701 AATAATAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (5 bp):
TATTT
Found at i:72128684 original size:9 final size:10
Alignment explanation
Indices: 72128668--72128700 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
72128658 CACTTAAAAA
72128668 TATTTTATTT
1 TATTTTATTT
72128678 T-TTTTATTT
1 TATTTTATTT
72128687 TATTTT-TTT
1 TATTTTATTT
72128696 TATTT
1 TATTT
72128701 AATAATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 17 0.77
10 5 0.23
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TATTTTATTT
Found at i:72128687 original size:14 final size:14
Alignment explanation
Indices: 72128668--72128700 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
72128658 CACTTAAAAA
72128668 TATTTTATTTTTTT
1 TATTTTATTTTTTT
72128682 TATTTTATTTTTTT
1 TATTTTATTTTTTT
72128696 TATTT
1 TATTT
72128701 AATAATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
TATTTTATTTTTTT
Found at i:72128758 original size:422 final size:422
Alignment explanation
Indices: 72127974--72128771 Score: 1560
Period size: 422 Copynumber: 1.9 Consensus size: 422
72127964 TTATTACGAG
72127974 ATAATAACAAAAGTAATCTAATCATGATGATCATAGACATTATGTATATTATTAATTATTATATA
1 ATAATAACAAAAGTAATCTAATCATGATGATCATAGACATTATGTATATTATTAATTATTATATA
72128039 ATAATAACAAGTGTAATCTAATCATGTATACAGTTCATTACAATTTTTATCACTTAATTAGTGTT
66 ATAATAACAAGTGTAATCTAATCATGTATACAGTTCATTACAATTTTTATCACTTAATTAGTGTT
72128104 ACAATTATACAAAATAAACTAGGATTTAGCACTATAAATAACTGCATTAGCAAAGCATTTTCATT
131 ACAATTATACAAAATAAACTAGGATTTAGCACTATAAATAACTGCATTAGCAAAGCATTTTCATT
72128169 CAAGTAACCTTTATAAAATCACTGGAAAAATATGTTTTTAGGATTATTAAATAGGTTCTGTTTTC
196 CAAGTAACCTTTATAAAATCACTGGAAAAATATGTTTTTAGGATTATTAAATAGGTTCTGTTTTC
*
72128234 ATCACTTAAAAATATTTTACTTTTTTTATTTTATTATTTGTATTTAATAATAAAGTTAATATCGC
261 ATCACTTAAAAATATTTTACTTTTTTTATTTTATTATTTGTATTTAATAATAAAGTTAATATCAC
72128299 CAAACATCTCCAAACTATGACCCTCATTCTAAATTAGTCCATAAGCTTCAAATCATTCTAATTGT
326 CAAACATCTCCAAACTATGACCCTCATTCTAAATTAGTCCATAAGCTTCAAATCATTCTAATTGT
72128364 ATCAAGGTTATATCAATTAGGTCCTTTTGTTA
391 ATCAAGGTTATATCAATTAGGTCCTTTTGTTA
72128396 ATAATAACAAAAGTAATCTAATCATGATGATCATAGACATTATGTATATTATTAATTATTATATA
1 ATAATAACAAAAGTAATCTAATCATGATGATCATAGACATTATGTATATTATTAATTATTATATA
72128461 ATAATAACAAGTGTAATCTAATCATGTATACAGTTCATTACAATTTTTATCACTTAATTAGTGTT
66 ATAATAACAAGTGTAATCTAATCATGTATACAGTTCATTACAATTTTTATCACTTAATTAGTGTT
72128526 ACAATTATACAAAATAAACTAGGATTTAGCACTATAAATAACTGCATTAGCAAAGCATTTTCATT
131 ACAATTATACAAAATAAACTAGGATTTAGCACTATAAATAACTGCATTAGCAAAGCATTTTCATT
72128591 CAAGTAACCTTTATAAAATCACTGGAAAAATATGTTTTTAGGATTATTAAATAGGTTCTGTTTTC
196 CAAGTAACCTTTATAAAATCACTGGAAAAATATGTTTTTAGGATTATTAAATAGGTTCTGTTTTC
* * *
72128656 ATCACTTAAAAATATTTTATTTTTTTTATTTTATTTTTTTTATTTAATAATAAAGTTAATATCAC
261 ATCACTTAAAAATATTTTACTTTTTTTATTTTATTATTTGTATTTAATAATAAAGTTAATATCAC
72128721 CAAACATCTCCAAACTATGACCCTCATTCTAAATTAGTCCATAAGCTTCAA
326 CAAACATCTCCAAACTATGACCCTCATTCTAAATTAGTCCATAAGCTTCAA
72128772 TTATATCAAT
Statistics
Matches: 372, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
422 372 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.40
Consensus pattern (422 bp):
ATAATAACAAAAGTAATCTAATCATGATGATCATAGACATTATGTATATTATTAATTATTATATA
ATAATAACAAGTGTAATCTAATCATGTATACAGTTCATTACAATTTTTATCACTTAATTAGTGTT
ACAATTATACAAAATAAACTAGGATTTAGCACTATAAATAACTGCATTAGCAAAGCATTTTCATT
CAAGTAACCTTTATAAAATCACTGGAAAAATATGTTTTTAGGATTATTAAATAGGTTCTGTTTTC
ATCACTTAAAAATATTTTACTTTTTTTATTTTATTATTTGTATTTAATAATAAAGTTAATATCAC
CAAACATCTCCAAACTATGACCCTCATTCTAAATTAGTCCATAAGCTTCAAATCATTCTAATTGT
ATCAAGGTTATATCAATTAGGTCCTTTTGTTA
Found at i:72130500 original size:17 final size:18
Alignment explanation
Indices: 72130473--72130506 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
72130463 TAATTATTTT
72130473 ATTAATAATATTAATGAA
1 ATTAATAATATTAATGAA
72130491 ATTAAT-ATATTAATGA
1 ATTAATAATATTAATGA
72130507 TTACTACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (18 bp):
ATTAATAATATTAATGAA
Found at i:72130509 original size:15 final size:16
Alignment explanation
Indices: 72130473--72130519 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
72130463 TAATTATTTT
72130473 ATTAATAATATTAATGAA
1 ATTAAT-ATATTAATG-A
72130491 ATTAATATATTAATG-
1 ATTAATATATTAATGA
* *
72130506 ATTACTACATTAAT
1 ATTAATATATTAAT
72130520 TATATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 12 0.44
17 9 0.33
18 6 0.22
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (16 bp):
ATTAATATATTAATGA
Done.