Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 217 of 332
Found at i:72134708 original size:96 final size:97
Alignment explanation
Indices: 72134599--72134773 Score: 273
Period size: 96 Copynumber: 1.8 Consensus size: 97
72134589 AATTTTAGGG
* * ** *
72134599 TTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTACT-AATTTT
1 TTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA-TAAATTTT
72134663 -AAAAAATTAGATTATGGTTTAGTGTTTATGGT
65 AAAAAAATTAGATTATGGTTTAGTGTTTATGGT
*
72134695 TTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTA
1 TTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTTA
72134760 AAAAAATTAGATTA
66 AAAAAATTAGATTA
72134774 AGATTTTAGG
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
95 1 0.01
96 56 0.79
97 14 0.20
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.41
Consensus pattern (97 bp):
TTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTTA
AAAAAATTAGATTATGGTTTAGTGTTTATGGT
Found at i:72135110 original size:126 final size:126
Alignment explanation
Indices: 72134890--72135413 Score: 798
Period size: 126 Copynumber: 4.2 Consensus size: 126
72134880 AAAAGCTTCT
* *
72134890 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* *
72134955 ATAGTGTCAAAAACGCTTCAATCAGGATGCATTGCCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * **
72135016 ACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAACTTTGAAAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* * * *
72135081 ATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTTAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
72135142 ACGTAGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* * *
72135207 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * * *
72135268 ACGTAGATGCTCTTTTACTACAATGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* *
72135333 ATAGTGTCAAAAACGCTTCAATCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
72135394 ACGTGGACGCTCTTTTGCTA
1 ACGTGGACGCTCTTTTGCTA
72135414 TAGTGGTTTC
Statistics
Matches: 361, Mismatches: 35, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
125 2 0.01
126 357 0.99
127 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:72138601 original size:62 final size:59
Alignment explanation
Indices: 72138535--72138822 Score: 180
Period size: 54 Copynumber: 4.9 Consensus size: 59
72138525 TATAATTAAT
72138535 TTATTTAAAACAACCTTTTATATTATCACATGAAATAATATAAAAATATTCAAAATGTTGCC
1 TTATTTAAAACAACCTTTTAT-TTAT-ACATGAAATAATATAAAAATATTCAAAAT-TTGCC
* * * * *
72138597 TTATTTAAAACAA--TTTCCATTT-T--ATTAAA-AATATAAAAGTAAATT-ATAATTAT--T
1 TTATTTAAAACAACCTTT-TATTTATACATGAAATAATATAAAA--ATATTCAAAATT-TGCC
*
72138651 TTATTTAAAACAACCTTTTATCTAATTACATGAAATAATATAAAAATATTCAAAATATTGCC
1 TTATTTAAAACAACCTTTTAT-TTA-TACATGAAATAATATAAAAATATTCAAAAT-TTGCC
* * * * * *
72138713 TTATTTAAAATAA--TTTCCATTT-T--ATTAAA-AATATAAAAGTA---AAATATAATTACT
1 TTATTTAAAACAACCTTT-TATTTATACATGAAATAATATAAAAATATTCAAA-AT--TTGCC
* *
72138767 TTATTTAAAACAACCTTTTATCTAATTACATGAAATAATATAAAAAGATTCAAAAT
1 TTATTTAAAACAACCTTTTAT-TTA-TACATGAAATAATATAAAAATATTCAAAAT
72138823 GTTTGTACAA
Statistics
Matches: 172, Mismatches: 24, Indels: 59
0.67 0.09 0.23
Matches are distributed among these distances:
52 3 0.02
53 2 0.01
54 29 0.17
55 25 0.15
56 23 0.13
57 4 0.02
58 3 0.02
59 5 0.03
60 24 0.14
61 24 0.14
62 25 0.15
63 2 0.01
64 3 0.02
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39
Consensus pattern (59 bp):
TTATTTAAAACAACCTTTTATTTATACATGAAATAATATAAAAATATTCAAAATTTGCC
Found at i:72138618 original size:116 final size:116
Alignment explanation
Indices: 72138443--72138822 Score: 643
Period size: 116 Copynumber: 3.3 Consensus size: 116
72138433 TTTATATTTT
* * * *
72138443 ATTACATGAAATAATATAAAAATATTCAAAATATTTCTTTATTAAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
72138508 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
* * *
72138559 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAACAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
*
72138624 AAAATATAAAAGTAAATTATAATTATTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
72138675 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
72138740 AAAATATAAAAGTAAAATATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
*
72138791 ATTACATGAAATAATATAAAAAGATTCAAAAT
1 ATTACATGAAATAATATAAAAATATTCAAAAT
72138823 GTTTGTACAA
Statistics
Matches: 248, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 248 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTATAATTAATTTATTTAAAACAACCTTTTATCTA
Found at i:72138807 original size:61 final size:61
Alignment explanation
Indices: 72138626--72138811 Score: 194
Period size: 61 Copynumber: 3.1 Consensus size: 61
72138616 TTTTATTAAA
* *
72138626 AATATAAAAGTAAATTATAATTATTTTATTTAAAACAACCTTTTATCTAATTACATGAAAT
1 AATATAAAAGTAAAATATAATTACTTTATTTAAAACAACCTTTTATCTAATTACATGAAAT
* * * * * *
72138687 AATATAAAAATATTCAAA-AT-ATTGCCTTATTTAAAATAA--TTTCCAT-T--TT--ATTAAA-
1 AATATAAAAGTA---AAATATAATTACTTTATTTAAAACAACCTTT-TATCTAATTACATGAAAT
72138742 AATATAAAAGTAAAATATAATTACTTTATTTAAAACAACCTTTTATCTAATTACATGAAAT
1 AATATAAAAGTAAAATATAATTACTTTATTTAAAACAACCTTTTATCTAATTACATGAAAT
72138803 AATATAAAA
1 AATATAAAA
72138812 AGATTCAAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
52 3 0.03
53 2 0.02
54 16 0.16
55 13 0.13
56 9 0.09
58 4 0.04
60 9 0.09
61 22 0.23
62 15 0.15
63 2 0.02
64 2 0.02
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.39
Consensus pattern (61 bp):
AATATAAAAGTAAAATATAATTACTTTATTTAAAACAACCTTTTATCTAATTACATGAAAT
Found at i:72139236 original size:18 final size:18
Alignment explanation
Indices: 72139210--72139252 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
72139200 GACTAGAAAA
* *
72139210 AGGAAACATATAAGGGCT
1 AGGATACATAAAAGGGCT
72139228 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
72139246 AGGATAC
1 AGGATAC
72139253 GTACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:72141009 original size:15 final size:15
Alignment explanation
Indices: 72140989--72141019 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72140979 TTTTTATTTT
*
72140989 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
72141004 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
72141019 A
1 A
72141020 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:72141094 original size:11 final size:11
Alignment explanation
Indices: 72141050--72141088 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
72141040 GAGATTTTTT
* *
72141050 AGAGGAATTTA
1 AGAGAAATTTG
72141061 AGAGAAATTTG
1 AGAGAAATTTG
72141072 AGAGAAATTTG
1 AGAGAAATTTG
72141083 AGAGAA
1 AGAGAA
72141089 TATTGAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (11 bp):
AGAGAAATTTG
Found at i:72141965 original size:35 final size:34
Alignment explanation
Indices: 72141907--72142001 Score: 93
Period size: 35 Copynumber: 2.7 Consensus size: 34
72141897 ATAAATTTAG
* **
72141907 TATAAATACAATTTAATTTATATTTGATTATTTGAT
1 TATAAATATAATTTAA-AAATATTTGA-TATTTGAT
* *
72141943 T-TAAATATAATTTGTAAAATATTTTGATATTTTAT
1 TATAAATATAATTT-AAAAATA-TTTGATATTTGAT
*
72141978 TATGAATATAATTTAAAAATATTT
1 TATAAATATAATTTAAAAATATTT
72142002 AAATTTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
34 3 0.06
35 28 0.57
36 18 0.37
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (34 bp):
TATAAATATAATTTAAAAATATTTGATATTTGAT
Found at i:72141986 original size:36 final size:35
Alignment explanation
Indices: 72141929--72142001 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
72141919 TTAATTTATA
*
72141929 TTTGATTATTTGATTTAAATATAATTTGTAAAATAT
1 TTTGATTATTTGATTTAAATATAATTT-AAAAATAT
* *
72141965 TTTGA-TATTTTATTATGAATATAATTTAAAAATAT
1 TTTGATTATTTGATT-TAAATATAATTTAAAAATAT
72142000 TT
1 TT
72142002 AAATTTTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
35 17 0.52
36 16 0.48
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (35 bp):
TTTGATTATTTGATTTAAATATAATTTAAAAATAT
Found at i:72142222 original size:21 final size:21
Alignment explanation
Indices: 72142198--72142246 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
72142188 CATTGTTTCT
*
72142198 AATCTCACCGCTATAGTATCC
1 AATCTCACCGCTATAGTAACC
*
72142219 AATCTCACCGCTATAGTAACT
1 AATCTCACCGCTATAGTAACC
72142240 AATCTCA
1 AATCTCA
72142247 TCGCCACCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.31, G:0.08, T:0.29
Consensus pattern (21 bp):
AATCTCACCGCTATAGTAACC
Found at i:72143007 original size:21 final size:21
Alignment explanation
Indices: 72142962--72143016 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
72142952 ACCATTGTTT
* *
72142962 CTAATCTCACTGCTACAATAT
1 CTAATCTCACCGCTACAATAA
* *
72142983 CTAATCTCACCGCTGCAGTAA
1 CTAATCTCACCGCTACAATAA
*
72143004 CTAACCTCACCGC
1 CTAATCTCACCGC
72143017 CACCGCTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
CTAATCTCACCGCTACAATAA
Found at i:72145324 original size:91 final size:91
Alignment explanation
Indices: 72145169--72145352 Score: 350
Period size: 91 Copynumber: 2.0 Consensus size: 91
72145159 TACTAAAACT
*
72145169 TTCAATTGAGCAATTTATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
72145234 TACATAACTCTGTCACTAATATCGCA
66 TACATAACTCTGTCACTAATATCGCA
72145260 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
*
72145325 TACATAACTCTGTCACTAATATTGCA
66 TACATAACTCTGTCACTAATATCGCA
72145351 TT
1 TT
72145353 TACAGAGCAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (91 bp):
TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
TACATAACTCTGTCACTAATATCGCA
Found at i:72145877 original size:20 final size:20
Alignment explanation
Indices: 72145831--72145911 Score: 74
Period size: 20 Copynumber: 4.0 Consensus size: 20
72145821 GAAGATGTGT
* *
72145831 AACAGAGGCATCAAAATGCA
1 AACAGAGGCAACAAAGTGCA
* * *
72145851 GATAGAGG-AAGAAATGTGCA
1 AACAGAGGCAACAAA-GTGCA
*
72145871 AACAGAGGCACCAAAGTGCA
1 AACAGAGGCAACAAAGTGCA
* *
72145891 AACAGAGACACCAAAGTGCA
1 AACAGAGGCAACAAAGTGCA
72145911 A
1 A
72145912 TCCCGTACAA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
19 4 0.08
20 41 0.84
21 4 0.08
ACGTcount: A:0.48, C:0.19, G:0.25, T:0.09
Consensus pattern (20 bp):
AACAGAGGCAACAAAGTGCA
Found at i:72146780 original size:42 final size:41
Alignment explanation
Indices: 72146698--72146779 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
72146688 GAAGGTAAGG
72146698 GTCTTGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAA
1 GTCTTGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAA
*
72146739 GTCTTGATCTATTTTTTTTAAAAAGTCCCATGGAAGAAAAA
1 GTCTTGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAA
72146780 AAAATATCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (41 bp):
GTCTTGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAA
Found at i:72146789 original size:40 final size:41
Alignment explanation
Indices: 72146702--72146790 Score: 126
Period size: 41 Copynumber: 2.2 Consensus size: 41
72146692 GTAAGGGTCT
****
72146702 TGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAAGTCT
1 TGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAAAAAA
*
72146743 TGATCTATTTTTTTTAAAAAGTCCCATGGAAGAAAAAAAAA
1 TGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAAAAAA
72146784 T-ATCTAT
1 TGATCTAT
72146791 GTTCATTAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 6 0.14
41 37 0.86
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (41 bp):
TGATCTATTTTTTTTAAAAAGTCCCATGAAAGAAAAAAAAA
Found at i:72148274 original size:48 final size:48
Alignment explanation
Indices: 72148217--72148489 Score: 201
Period size: 48 Copynumber: 5.9 Consensus size: 48
72148207 TAGGGTTATG
*
72148217 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCGATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATC
** * * *
72148265 TGTGATCCCATGTAAGACCATACCTGGGATATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATC
* **** * * *
72148313 TATGATTTTGTATAAGACCATGTCTGGGACATGGCA-TCG-AT--ATG
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATC
* ** * * * *
72148357 AGCCAT--CGTGTAAGACCATAG-CTAGG-C-T---ATCGGCTTCGATC
1 TGTGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATC
* *
72148398 TATGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATC
* * * * *
72148446 TGGGATCCCATGTAAGACCATATTTGGAATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
72148490 TTACTATATG
Statistics
Matches: 169, Mismatches: 43, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 5 0.03
42 16 0.09
43 17 0.10
44 5 0.03
45 1 0.01
46 2 0.01
47 2 0.01
48 117 0.69
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATC
Found at i:72148371 original size:42 final size:41
Alignment explanation
Indices: 72148325--72148434 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 41
72148315 TGATTTTGTA
*
72148325 TAAGACCATGTCTGGGACATGGCATCGA-TATGAGCCATCGTG
1 TAAGACCATGTCTGGGACATGGCATCGACTATGAGCC--CATG
* * *
72148367 TAAGACCATAG-CTAGG-CTATCGGCTTCGATCTATGATCCCATG
1 TAAGACCAT-GTCTGGGAC-AT-GGCATCGA-CTATGAGCCCATG
72148410 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
72148435 TGGCATCGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
41 1 0.02
42 20 0.36
43 26 0.47
44 1 0.02
45 7 0.13
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (41 bp):
TAAGACCATGTCTGGGACATGGCATCGACTATGAGCCCATG
Found at i:72149565 original size:40 final size:41
Alignment explanation
Indices: 72149521--72149615 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
72149511 GGCGTTTTTT
* *
72149521 AAACGCCGCGAAAAA-TAGAGAATTAGCAGCGCTTTTGGCA
1 AAACGCCGCCAAAAACCAGAGAATTAGCAGCGCTTTTGGCA
* *
72149561 AAACGCCGCCAAAAACCAGAGCATTAGCGGCGCTTTTGGCA
1 AAACGCCGCCAAAAACCAGAGAATTAGCAGCGCTTTTGGCA
*
72149602 AAACGCCGCTAAAA
1 AAACGCCGCCAAAA
72149616 GTCATATAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 14 0.29
41 35 0.71
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.15
Consensus pattern (41 bp):
AAACGCCGCCAAAAACCAGAGAATTAGCAGCGCTTTTGGCA
Found at i:72149808 original size:21 final size:21
Alignment explanation
Indices: 72149784--72149864 Score: 90
Period size: 21 Copynumber: 3.7 Consensus size: 21
72149774 ATAGTTTATG
*
72149784 GTTTATGGTTTAAGATATATA
1 GTTTAGGGTTTAAGATATATA
*
72149805 GTTTAGGGTTTAAGATTTATTA
1 GTTTAGGGTTTAAGATATA-TA
* *
72149827 GTTAACTATGGTTTAAGATATATG
1 GTT---TAGGGTTTAAGATATATA
72149851 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
72149865 GTTTAGAAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
21 27 0.54
22 5 0.10
24 4 0.08
25 14 0.28
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.46
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATA
Found at i:72149837 original size:46 final size:46
Alignment explanation
Indices: 72149787--72149880 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
72149777 GTTTATGGTT
**
72149787 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTATTAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGAAGTTAAC
* *
72149833 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGAAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGAAGTTAAC
72149879 TA
1 TA
72149881 GTATTTGAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.44
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGAAGTTAAC
Found at i:72149936 original size:7 final size:7
Alignment explanation
Indices: 72149924--72149998 Score: 55
Period size: 7 Copynumber: 10.7 Consensus size: 7
72149914 GGGATTATAA
72149924 TTTAGGG
1 TTTAGGG
72149931 TTTAGGG
1 TTTAGGG
*
72149938 GTTAGGG
1 TTTAGGG
72149945 -TT-GGAG
1 TTTAGG-G
*
72149951 TTTAAGG
1 TTTAGGG
*
72149958 TGTAAGGG
1 T-TTAGGG
*
72149966 TTTGGGG
1 TTTAGGG
*
72149973 TTAAGGG
1 TTTAGGG
*
72149980 TTAAGGG
1 TTTAGGG
*
72149987 TTTAGAG
1 TTTAGGG
72149994 TTTAG
1 TTTAG
72149999 AAAAATAATA
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 2 0.04
6 3 0.06
7 43 0.80
8 6 0.11
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (7 bp):
TTTAGGG
Found at i:72149966 original size:21 final size:22
Alignment explanation
Indices: 72149930--72149997 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 22
72149920 ATAATTTAGG
*
72149930 GTTTAGGGGTT-AGGG-TTGGA
1 GTTTAAGGGTTAAGGGTTTGGA
72149950 GTTTAA-GGTGTAAGGGTTTGG-
1 GTTTAAGGGT-TAAGGGTTTGGA
* *
72149971 GGTTAAGGGTTAAGGGTTTAGA
1 GTTTAAGGGTTAAGGGTTTGGA
72149993 GTTTA
1 GTTTA
72149998 GAAAAATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 3 0.08
20 6 0.15
21 19 0.49
22 11 0.28
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.37
Consensus pattern (22 bp):
GTTTAAGGGTTAAGGGTTTGGA
Found at i:72150515 original size:23 final size:23
Alignment explanation
Indices: 72150454--72150516 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
72150444 TAATATCCTA
*
72150454 TATATGTAATTGTATTTAAATTT
1 TATATGTAATTGTATTAAAATTT
* *
72150477 T-TAATTTATACT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
72150500 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
72150517 GCATTTTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
22 3 0.10
23 25 0.81
24 3 0.10
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:72156299 original size:31 final size:31
Alignment explanation
Indices: 72156256--72156332 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
72156246 GTGTCCCAAG
*
72156256 CCACACGGGCGTGTGTGATCACACGGCCTAC
1 CCACACGAGCGTGTGTGATCACACGGCCTAC
*
72156287 CCACACGAGCGTGTGTGATCACACGGCCTAG
1 CCACACGAGCGTGTGTGATCACACGGCCTAC
72156318 CCACACGAGCGTGTG
1 CCACACGAGCGTGTG
72156333 ACCCTCCAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.16
Consensus pattern (31 bp):
CCACACGAGCGTGTGTGATCACACGGCCTAC
Found at i:72159288 original size:3 final size:3
Alignment explanation
Indices: 72159280--72159306 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
72159270 TAGCTCCATA
72159280 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
72159307 TATGAGCTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:72165963 original size:79 final size:80
Alignment explanation
Indices: 72165864--72166031 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
72165854 CTCGTTCAAG
* * ** * *
72165864 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCAGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGA-A
*
72165927 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
72165943 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGAATT
72166008 AATAACTCGCACAAA
66 AATAACTCGCACAAA
*
72166023 TACCTTCGG
1 TGCCTTCGG
72166032 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
79 32 0.43
80 42 0.57
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:72166015 original size:80 final size:80
Alignment explanation
Indices: 72165904--72166084 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
72165894 CTCATTCAAT
* * * *
72165904 GCCTTCAGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
72165967 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
72165983 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
72166047 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
72166064 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
72166085 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:72166044 original size:40 final size:40
Alignment explanation
Indices: 72165901--72166084 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
72165891 TAACTCATTC
* * *
72165901 AATGCCTTCAGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
72165941 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
72165981 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
72166021 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
72166062 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72166085 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 102 0.84
41 11 0.09
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:72184894 original size:6 final size:6
Alignment explanation
Indices: 72184883--72185069 Score: 145
Period size: 6 Copynumber: 30.8 Consensus size: 6
72184873 AACCAAAATG
*
72184883 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * *
72184931 AGTAA-C AGAATC AGAATC AGAATC AAAATT AG-GTGAC AGAATC AGAACC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
72184980 AGAATC AATAAT- AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC -AGAATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
72185028 AGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
72185070 GTGAATGCAA
Statistics
Matches: 143, Mismatches: 22, Indels: 32
0.73 0.11 0.16
Matches are distributed among these distances:
5 13 0.09
6 115 0.80
7 12 0.08
8 3 0.02
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:72184898 original size:30 final size:29
Alignment explanation
Indices: 72184862--72185069 Score: 194
Period size: 30 Copynumber: 7.1 Consensus size: 29
72184852 AAGAAACATT
* * *
72184862 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
72184892 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
72184922 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* * *
72184952 ATCAAAATTAGGTGACAGAATCAGAACCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
*
72184983 ATC--AA---TAATAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
* *
72185007 ATCAGTATTAGTAACAGAATCAGAATCAAA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
72185037 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
72185068 AT
1 AT
72185070 GTGAATGCAA
Statistics
Matches: 148, Mismatches: 18, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
24 19 0.13
26 1 0.01
29 3 0.02
30 80 0.54
31 45 0.30
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:72184983 original size:85 final size:85
Alignment explanation
Indices: 72184883--72185069 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
72184873 AACCAAAATG
*
72184883 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
72184948 CAGAATCAAAATTAGGTGAC
66 CAAAATCAAAATTAGGTGAC
* * *
72184968 AGAATCAGAACCAGAATCAATAATAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
72185033 CAAAATCAGAATTAGGTGAC
66 CAAAATCAAAATTAGGTGAC
72185053 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
72185070 GTGAATGCAA
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 95 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAAAATCAAAATTAGGTGAC
Found at i:72185250 original size:27 final size:27
Alignment explanation
Indices: 72185205--72185260 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
72185195 GATGTCGTGA
* *
72185205 CAGAGTCACCAGATACAGACATTGTGG
1 CAGAGCCACCAGATACAGACAATGTGG
*
72185232 CAGAGCCACCAGA-ATCAGATAATGTGG
1 CAGAGCCACCAGATA-CAGACAATGTGG
72185259 CA
1 CA
72185261 AACCCACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGACAATGTGG
Found at i:72185473 original size:22 final size:22
Alignment explanation
Indices: 72185425--72185483 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
72185415 GTAAATACGT
*
72185425 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
72185447 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
72185469 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
72185484 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:72185650 original size:27 final size:26
Alignment explanation
Indices: 72185571--72185653 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72185561 TCGATCGATC
* * *
72185571 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72185597 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72185624 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72185651 AAC
1 AAC
72185654 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72185882 original size:27 final size:27
Alignment explanation
Indices: 72185852--72186046 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
72185842 GGGGCAAAAT
* * *
72185852 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72185879 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72185906 GGTATTTCTACCCTACAA-GGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72185932 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72185959 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72185986 AGTAATTCTACCCTA-TAGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * *
72186013 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72186040 AGTAATT
1 GGTAATT
72186047 TCACAATCGA
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
26 25 0.17
27 115 0.80
28 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72185995 original size:80 final size:82
Alignment explanation
Indices: 72185854--72186046 Score: 257
Period size: 80 Copynumber: 2.4 Consensus size: 82
72185844 GGCAAAATGG
* * * * ** *
72185854 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
72185919 TACAAGG-TATTTC-GA
66 TACAAGGATATTTCAGA
* *
72185934 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTATCCTATAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
* *
72185999 TATAGGGATATTTCAGA
66 TACAAGGATATTTCAGA
*
72186016 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
72186047 TCACAATCGA
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
80 61 0.62
81 36 0.36
82 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (82 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
TACAAGGATATTTCAGA
Found at i:72186011 original size:54 final size:54
Alignment explanation
Indices: 72185852--72186046 Score: 241
Period size: 54 Copynumber: 3.6 Consensus size: 54
72185842 GGGGCAAAAT
* * * * * *
72185852 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
72185906 GGTATTTCTACCCTACA-AGGTATTTC-GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * * *
72185959 GGTAATTCTATCCTATAGGGGTATTTCAGTAATTCTACCCTATAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
72186013 AGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATT
72186047 TCACAATCGA
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.01
53 45 0.37
54 75 0.61
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:72186081 original size:27 final size:27
Alignment explanation
Indices: 72186051--72186405 Score: 377
Period size: 27 Copynumber: 13.2 Consensus size: 27
72186041 GTAATTTCAC
*
72186051 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
72186078 AATCGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
72186105 AA-CTGAGGGT-AAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGA-TAATTCTGTA
* * **
72186132 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
72186159 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
72186186 AATCGAGGGTAAAA-TAGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
* *
72186213 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
* **
72186240 AATCGAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
72186267 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
72186294 AATCGAGGG-AAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
*
72186320 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
*
72186347 AATCGAGGGTAAAAC-AGTAATTCTATA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
*
72186374 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
72186401 AATCG
1 AATCG
72186406 GGAGTACTTT
Statistics
Matches: 279, Mismatches: 32, Indels: 34
0.81 0.09 0.10
Matches are distributed among these distances:
25 1 0.00
26 29 0.10
27 241 0.86
28 8 0.03
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:72186438 original size:54 final size:54
Alignment explanation
Indices: 72186055--72186405 Score: 480
Period size: 54 Copynumber: 6.5 Consensus size: 54
72186045 TTTCACAATC
* * * *
72186055 GAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAATAATTTTGTAAACT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT
* * * * *
72186109 GAGGGTAAACCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATT-T-TACAAAT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA-AACT
*
72186162 CGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT
1 -GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT
* *
72186217 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATT-T-TACAAAT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTA-AACT
* *
72186270 CAAGGGTAAAACGGTAATTCTATAAATCGAGGG-AAAACAGTAATTCTGTAAACT
1 -GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT
*
72186324 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACT
1 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT
72186378 GAGGGTAAAACGGTAATTCTGTAAATCG
1 GAGGGTAAAACGGTAATTCTGTAAATCG
72186406 GGAGTACTTT
Statistics
Matches: 262, Mismatches: 24, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
52 4 0.02
53 49 0.19
54 201 0.77
55 6 0.02
56 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (54 bp):
GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT
Found at i:72186438 original size:81 final size:81
Alignment explanation
Indices: 72186051--72186405 Score: 450
Period size: 81 Copynumber: 4.4 Consensus size: 81
72186041 GTAATTTCAC
* * ** *
72186051 AATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAATAATTTTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGT
* * *
72186115 AAACCAGTAATTTTGTA
65 AAAACAGTAATTCTATA
* **
72186132 AATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
* *
72186197 AAATAGTAATTCTGTA
66 AAACAGTAATTCTATA
* * * ** *
72186213 AA-CTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTACAAATCAAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
*
72186277 AAAACGGTAATTCTATA
65 AAAACAGTAATTCTATA
*
72186294 AATCGAGGG-AAAACAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
72186357 AAAACAGTAATTCTATA
65 AAAACAGTAATTCTATA
72186374 AA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 AATC-GAGGGTAAAACGGTAATTCTGTAAATCG
72186406 GGAGTACTTT
Statistics
Matches: 237, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
79 2 0.01
80 69 0.29
81 163 0.69
82 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
AAACAGTAATTCTATA
Found at i:72187972 original size:27 final size:27
Alignment explanation
Indices: 72187926--72188108 Score: 178
Period size: 27 Copynumber: 6.8 Consensus size: 27
72187916 TAAGACCTTA
* ** *
72187926 ATTTTTAAAATTACCAAAATACCCCCA
1 ATTTGTAAAATTACTGAAATACCCCCG
*
72187953 ACTTGTAAAATTACTGAAATACCCCCGG
1 ATTTGTAAAATTACTGAAATACCCCC-G
*
72187981 A-TTGTAAAATTACTAAAATA-CCCCG
1 ATTTGTAAAATTACTGAAATACCCCCG
*
72188006 ATTTGTAAAATTA-TCGAAATA-CCCCT
1 ATTTGTAAAATTACT-GAAATACCCCCG
* * *
72188032 AGTTTGTAAAATTAATGAAATACTCTCG
1 A-TTTGTAAAATTACTGAAATACCCCCG
* * *
72188060 GTTTGTAAAATTACTAAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCCCG
72188087 ATTTGTAAAATTA-TCGAAATAC
1 ATTTGTAAAATTACT-GAAATAC
72188109 TCTTGTAGTG
Statistics
Matches: 132, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
25 3 0.02
26 26 0.20
27 99 0.75
28 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCCCG
Found at i:72188066 original size:80 final size:81
Alignment explanation
Indices: 72187926--72188108 Score: 269
Period size: 80 Copynumber: 2.3 Consensus size: 81
72187916 TAAGACCTTA
* * * *
72187926 ATTTTTAAAATTACCAAAATACCCCCAACTTGTAAAATTACTGAAATACCCCCGGATTGTAAAAT
1 ATTTGTAAAATTATCGAAATACCCCCAACTTGTAAAATTAATGAAATACCCCCGGATTGTAAAAT
72187991 TACTAAAATACCC-CG
66 TACTAAAATACCCTCG
* ** * * *
72188006 ATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTAATGAAATACTCTCGGTTTGTAAAAT
1 ATTTGTAAAATTATCGAAATACCCCCAACTTGTAAAATTAATGAAATACCCCCGGATTGTAAAAT
72188071 TACTAAAATACCCTCG
66 TACTAAAATACCCTCG
72188087 ATTTGTAAAATTATCGAAATAC
1 ATTTGTAAAATTATCGAAATAC
72188109 TCTTGTAGTG
Statistics
Matches: 92, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 68 0.74
81 24 0.26
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
ATTTGTAAAATTATCGAAATACCCCCAACTTGTAAAATTAATGAAATACCCCCGGATTGTAAAAT
TACTAAAATACCCTCG
Found at i:72188120 original size:27 final size:27
Alignment explanation
Indices: 72188009--72188286 Score: 305
Period size: 27 Copynumber: 10.3 Consensus size: 27
72187999 TACCCCGATT
* *
72188009 TGTAAAATTATCGAAATACCCCTAGT-T
1 TGTAAAATTATCGAAATA-CCCTTGTAG
* * *
72188036 TGTAAAATTAAT-GAAATACTCTCGGT-T
1 TGTAAAATT-ATCGAAATACCCT-TGTAG
* * *
72188063 TGTAAAATTA-CTAAAATACCCTCG-ATT
1 TGTAAAATTATC-GAAATACCCTTGTA-G
*
72188090 TGTAAAATTATCGAAATACTCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
72188117 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* *
72188144 AGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72188171 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72188198 TGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
72188225 TGTAAAATTACCAAAATACCCTTTTAA
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72188252 TGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72188279 AGTAAAAT
1 TGTAAAAT
72188287 GACTGTTTTG
Statistics
Matches: 215, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.02
27 206 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:72188125 original size:81 final size:82
Alignment explanation
Indices: 72187956--72188286 Score: 351
Period size: 81 Copynumber: 4.1 Consensus size: 82
72187946 ACCCCCAACT
* * *
72187956 TGTAAAATTA-CTGAAATACCCCCGG-ATTGTAAAATTACTAAAATACCC-CGATTTGTAAAATT
1 TGTAAAATTATC-GAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATTTGTAAAATT
* *
72188018 ATCGAAATACCCCTAGT-T
65 ATCGAAATA-CCCTTGTAG
* * *
72188036 TGTAAAATTAAT-GAAATACTCTCGGT-TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
1 TGTAAAATT-ATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATTTGTAAAATT
*
72188099 ATCGAAATACTCTTGTAG
65 ATCGAAATACCCTTGTAG
* * * * *
72188117 TGTAAAATTATCGAAATACCCT-TGTAGAGTAAAATTACCGAAATACCCTTG-TAGTGTAAAATT
1 TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGAT-TTGTAAAATT
*
72188180 ATTGAAATACCCTTGTAG
65 ATCGAAATACCCTTGTAG
* * *
72188198 TGTAAAATTATCGAAATATCCT-TGTAGTGTAAAATTACCAAAATACCCT--TTTAATGTAAAAT
1 TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATT--TGTAAAAT
*
72188260 TATCGAAATACCCCTGTAG
64 TATCGAAATACCCTTGTAG
*
72188279 AGTAAAAT
1 TGTAAAAT
72188287 GACTGTTTTG
Statistics
Matches: 218, Mismatches: 22, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
80 53 0.24
81 165 0.76
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (82 bp):
TGTAAAATTATCGAAATACCCTCGGTAGTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTA
TCGAAATACCCTTGTAG
Found at i:72188301 original size:54 final size:54
Alignment explanation
Indices: 72187956--72188291 Score: 287
Period size: 54 Copynumber: 6.2 Consensus size: 54
72187946 ACCCCCAACT
** * * * * *
72187956 TGTAAAATTACTGAAATACCCCCGGATTGTAAAATTA-CTAAAATACCC-CG-ATT
1 TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATC-GAAATACCCTTGTA-G
* * * * *
72188009 TGTAAAATTA-TCGAAATACCCCTAGT-TTGTAAAATTAAT-GAAATACTCTCGGT-T
1 TGTAAAATTACT-GAAATA-CCCTTGTAATGTAAAATT-ATCGAAATACCCT-TGTAG
* * * *
72188063 TGTAAAATTACTAAAATACCCTCG-ATTTGTAAAATTATCGAAATACTCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTA-ATGTAAAATTATCGAAATACCCTTGTAG
*
72188117 TGTAAAATTA-TCGAAATACCCTTGTAGA-GTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACT-GAAATACCCTTGTA-ATGTAAAATTATCGAAATACCCTTGTAG
* * *
72188171 TGTAAAATTATTGAAATACCCTTGTAGTGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATCGAAATACCCTTGTAG
** * *
72188225 TGTAAAATTACCAAAATACCCTTTTAATGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATCGAAATACCCTTGTAG
* *
72188279 AGTAAAATGACTG
1 TGTAAAATTACTG
72188292 TTTTGCCCTT
Statistics
Matches: 237, Mismatches: 30, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
52 1 0.00
53 43 0.18
54 189 0.80
55 4 0.02
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (54 bp):
TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATCGAAATACCCTTGTAG
Found at i:72188389 original size:34 final size:34
Alignment explanation
Indices: 72188336--72188428 Score: 141
Period size: 34 Copynumber: 2.7 Consensus size: 34
72188326 ATGAATTTGG
* *
72188336 CTGATTTGACTGTGGTTGTATGACTGTGTTTTAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTGAA
*
72188370 CTGAATTGACTGTGATTGTATGACTGTGTTTGAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTGAA
* *
72188404 CTGACTTGACTGTGGTTATATGACT
1 CTGAATTGACTGTGGTTGTATGACT
72188429 AACATGCTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.20, C:0.11, G:0.26, T:0.43
Consensus pattern (34 bp):
CTGAATTGACTGTGGTTGTATGACTGTGTTTGAA
Found at i:72190258 original size:27 final size:25
Alignment explanation
Indices: 72190223--72190333 Score: 105
Period size: 27 Copynumber: 4.2 Consensus size: 25
72190213 AGCATGGCTG
*
72190223 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTG-CAGAGCCA
*
72190249 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GT-GCAGAGCCA
**
72190277 CCAGAACAGATATATGTGGTGAGCCA
1 CCAGAACAGATA-ATGTGCAGAGCCA
* *
72190303 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGT-GCAGAGCCA
72190330 CCAG
1 CCAG
72190334 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.01
26 25 0.36
27 28 0.40
28 15 0.21
29 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (25 bp):
CCAGAACAGATAATGTGCAGAGCCA
Found at i:72190287 original size:54 final size:53
Alignment explanation
Indices: 72190223--72190333 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
72190213 AGCATGGCTG
*
72190223 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTG-CAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
** * * *
72190277 CCAGAACAGATATATGTGGTGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGCAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
72190330 CCAG
1 CCAG
72190334 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 22 0.44
54 23 0.46
55 5 0.10
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATATATGTGCAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:72190771 original size:16 final size:15
Alignment explanation
Indices: 72190750--72190779 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
72190740 AAAATACCAA
72190750 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
72190766 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
72190780 CCGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:72191771 original size:24 final size:24
Alignment explanation
Indices: 72191744--72191794 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
72191734 CTAGATTTCC
**
72191744 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
72191768 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
72191792 TCC
1 TCC
72191795 TGACAGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:72198086 original size:27 final size:26
Alignment explanation
Indices: 72198051--72198162 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
72198041 AGCATGACTG
* *
72198051 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
72198077 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
72198105 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
72198132 CCAGATCAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
72198159 CCAG
1 CCAG
72198163 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:72198115 original size:54 final size:54
Alignment explanation
Indices: 72198051--72198162 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
72198041 AGCATGACTG
*
72198051 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAA-CCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCA-AAGCCA
* *
72198105 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAGCCA
72198159 CCAG
1 CCAG
72198163 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
53 2 0.04
54 33 0.62
55 18 0.34
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAGCCA
Found at i:72198986 original size:46 final size:46
Alignment explanation
Indices: 72198936--72199111 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72198926 TGGTTGAGCA
72198936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72198982 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72199027 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72199075 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72199112 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72199092 original size:93 final size:93
Alignment explanation
Indices: 72198933--72199104 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72198923 GGATGGTTGA
* *
72198933 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72198998 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72199026 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72199091 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72199105 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72201701 original size:24 final size:24
Alignment explanation
Indices: 72201674--72201724 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
72201664 CTAGATTTCC
**
72201674 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
72201698 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
72201722 TCC
1 TCC
72201725 TGACAGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:72203189 original size:22 final size:21
Alignment explanation
Indices: 72203164--72203208 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
72203154 CGGGCTGTCT
*
72203164 ACACAGCCGTGTGCCTCCTCTC
1 ACACAGCCATGTGCCTCCT-TC
* *
72203186 ACACGGGCATGTGCCTCCTTC
1 ACACAGCCATGTGCCTCCTTC
72203207 AC
1 AC
72203209 TTGGGCATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.16, C:0.42, G:0.20, T:0.22
Consensus pattern (21 bp):
ACACAGCCATGTGCCTCCTTC
Found at i:72203214 original size:21 final size:22
Alignment explanation
Indices: 72203173--72203218 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
72203163 TACACAGCCG
72203173 TGTGCCTCCTCTCACACGGGCA
1 TGTGCCTCCTCTCACACGGGCA
**
72203195 TGTGCCTCCT-TCACTTGGGCA
1 TGTGCCTCCTCTCACACGGGCA
72203216 TGT
1 TGT
72203219 TTCGGAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.11, C:0.35, G:0.24, T:0.30
Consensus pattern (22 bp):
TGTGCCTCCTCTCACACGGGCA
Found at i:72205331 original size:53 final size:52
Alignment explanation
Indices: 72205184--72205343 Score: 180
Period size: 52 Copynumber: 3.1 Consensus size: 52
72205174 TGACGGAAAA
* * * * *
72205184 GATGTGATATATGATTCGGTATAAGACCATAGCCGGGCTATGGCATCGGTAC
1 GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTAT
* * * *
72205236 AATGTGAT-TCGTG-TTCCCGTATAAGACCATAGCTAGGTTATGGCATCGGTGT
1 GATGTGATAT-GTGATT-CCGTATAAGACCATAGCTGGGATATGGCATCGGTAT
**
72205288 GATGTGATAATGTGATTCCGTATAAGACCATATTTGGGATATGGCATCGGTAT
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTAT
72205341 GAT
1 GAT
72205344 ATGTGATCCG
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
51 3 0.03
52 46 0.52
53 37 0.42
54 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (52 bp):
GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTAT
Found at i:72213519 original size:20 final size:20
Alignment explanation
Indices: 72213494--72213546 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
72213484 TGCACATGGG
72213494 CAGGCCACACGGGCATGTTC
1 CAGGCCACACGGGCATGTTC
* *
72213514 CAGGCCACACGGACGTGTTC
1 CAGGCCACACGGGCATGTTC
72213534 CAGGCCACACGGG
1 CAGGCCACACGGG
72213547 TGTAATATCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.36, G:0.32, T:0.11
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTTC
Found at i:72214526 original size:93 final size:93
Alignment explanation
Indices: 72214367--72214536 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
72214357 GGATGGTTGA
* * **
72214367 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATTTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
72214432 TGAGTCCGAGTTTGTGAAATGTAACTAG
66 TGAGTCCGAGTTTGTGAAATGTAACTAG
* *
72214460 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
72214525 TGAGTCCGAGTT
66 TGAGTCCGAGTT
72214537 CACTTAGGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGATCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAAATGTAACTAG
Found at i:72214541 original size:46 final size:45
Alignment explanation
Indices: 72214371--72214542 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
72214361 GGTTGAGCAT
* **
72214371 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATTT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
* * *
72214417 CCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAA-T--GC
*
72214462 ATCCGAACTCGTTGAGTTGAGTCCGAGATCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
*
72214510 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72214543 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
45 1 0.01
46 56 0.54
47 25 0.24
48 3 0.03
50 4 0.04
51 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGC
Found at i:72223308 original size:40 final size:40
Alignment explanation
Indices: 72223271--72223492 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
72223261 GCTACTCGTT
* *
72223271 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
72223311 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
72223351 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
72223391 CAAATGCCTTC-GG-CTTAGCCC--AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
72223427 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
72223468 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
72223493 CATCATTCAA
Statistics
Matches: 162, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
36 26 0.16
38 14 0.09
39 2 0.01
40 107 0.66
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:72233945 original size:42 final size:40
Alignment explanation
Indices: 72233771--72233992 Score: 219
Period size: 38 Copynumber: 5.7 Consensus size: 40
72233761 TGAAATGATG
* * * *
72233771 TCCGGGCTAAGTCCCGAA-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
72233810 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
***
72233849 TTTTGGCTAAG-CCCGAA-GCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72233887 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-TACTAAA
*
72233928 TCCGGGGTTAAGTCCCGAAGGCATTTGTGC-AGTTACTATAA
1 TCC-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72233969 -CC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72233993 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 17, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
37 17 0.11
38 34 0.22
39 29 0.19
40 28 0.18
41 22 0.14
42 26 0.17
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72242817 original size:94 final size:94
Alignment explanation
Indices: 72242701--72242872 Score: 267
Period size: 94 Copynumber: 1.8 Consensus size: 94
72242691 CCCCTAAGTG
** * *
72242701 AACTCGGGACTCAACTCAACGAGCTCGGGGCATTCGCATCCATA-AGTGATCTCGGACTCAACTC
1 AACTCGGGACTCAACTCAACGAGCTC-GGAAATTCACATCCATAGAGTGAACTCGGACTCAACTC
72242765 AACGAGTTCGGATGCCTAGTTACATTTCACA
65 AACGA-TTCGGATGCCTAGTTACATTTCACA
*
72242796 AACTC-GGACTCAACTCAACGAGTTCGGAAATTCACATCCATAGAGTGAACTCGGACTCAACTCA
1 AACTCGGGACTCAACTCAACGAGCTCGGAAATTCACATCCATAGAGTGAACTCGGACTCAACTCA
72242860 ACGATTCGGATGC
66 ACGATTCGGATGC
72242873 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
93 23 0.32
94 43 0.61
95 5 0.07
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (94 bp):
AACTCGGGACTCAACTCAACGAGCTCGGAAATTCACATCCATAGAGTGAACTCGGACTCAACTCA
ACGATTCGGATGCCTAGTTACATTTCACA
Found at i:72242847 original size:47 final size:44
Alignment explanation
Indices: 72242695--72242869 Score: 149
Period size: 47 Copynumber: 3.8 Consensus size: 44
72242685 AACCCGCCCC
* *
72242695 TAAGTGAACTCGGGACTCAACTCAACGAGCTCGGGGCATTCGCATCCA
1 TAAGTGAACTC-GGACTCAACTCAACGAGTTC--GGAATTC-CATCCA
* * *
72242743 TAAGTGATCTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCC-A--TCCA
* **
72242789 TTTCA-CAAACTCGGACTCAACTCAACGAGTTCGGAAATTCACATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-AATTC-CATCCA
72242836 TAGAGTGAACTCGGACTCAACTCAACGA-TTCGGA
1 TA-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
72242870 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 23
0.74 0.09 0.16
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 4 0.04
46 9 0.09
47 69 0.66
48 12 0.12
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCCATCCA
Found at i:72243735 original size:20 final size:21
Alignment explanation
Indices: 72243703--72243757 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
72243693 GATATGTACA
72243703 CCCGTGTTGGCCTGGAACA-CG
1 CCCGTG-TGGCCTGGAACATCG
* *
72243724 TCCGTGTGGCCTGGAACATTG
1 CCCGTGTGGCCTGGAACATCG
72243745 CCCGTGTGGCCTG
1 CCCGTGTGGCCTG
72243758 CCCATGTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.11, C:0.31, G:0.35, T:0.24
Consensus pattern (21 bp):
CCCGTGTGGCCTGGAACATCG
Found at i:72258356 original size:79 final size:81
Alignment explanation
Indices: 72258232--72258415 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
72258222 GCTACTCGTT
* *
72258232 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
72258295 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
72258311 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
72258374 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
72258391 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72258416 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:72258415 original size:40 final size:40
Alignment explanation
Indices: 72258213--72258415 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
72258203 CGGAATTTAA
** *
72258213 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72258253 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72258292 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72258331 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72258371 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72258411 CCGGA
1 CCGGA
72258416 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72264758 original size:20 final size:19
Alignment explanation
Indices: 72264735--72264777 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
72264725 TTTTTTAAAG
*
72264735 TTTTGTTGCTTTTATTTTTA
1 TTTTGTTGATTTTA-TTTTA
*
72264755 TTTTGTTTATTTTATTTTA
1 TTTTGTTGATTTTATTTTA
72264774 TTTT
1 TTTT
72264778 CATTGTGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (19 bp):
TTTTGTTGATTTTATTTTA
Found at i:72269311 original size:26 final size:26
Alignment explanation
Indices: 72269281--72269331 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
72269271 CACCAATGAA
*
72269281 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
72269307 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
72269332 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:72269342 original size:102 final size:102
Alignment explanation
Indices: 72269147--72269409 Score: 415
Period size: 102 Copynumber: 2.6 Consensus size: 102
72269137 TAACCGTTAT
* *
72269147 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
72269212 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
72269249 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
72269312 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTT--CATTTCAAAGATA
* * * **
72269351 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
72269410 TTTATATACA
Statistics
Matches: 150, Mismatches: 7, Indels: 7
0.91 0.04 0.04
Matches are distributed among these distances:
100 28 0.19
101 27 0.18
102 70 0.47
103 25 0.17
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (102 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
Found at i:72269768 original size:29 final size:29
Alignment explanation
Indices: 72269735--72269798 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
72269725 TAATCCACCA
72269735 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
72269764 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
72269794 CCCAA
1 CCCAA
72269799 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:72269772 original size:30 final size:30
Alignment explanation
Indices: 72269742--72269798 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
72269732 CCACCCAACT
72269742 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
72269771 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
72269799 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:72276798 original size:101 final size:103
Alignment explanation
Indices: 72276622--72276885 Score: 426
Period size: 101 Copynumber: 2.6 Consensus size: 103
72276612 TAACCGTTAT
* *
72276622 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
72276687 AATCAGCACATAGCAACCCCCTTT-CATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTACATTTCAAAGATA
72276724 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
72276788 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATA
* * * **
72276827 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
72276886 TTTATATACA
Statistics
Matches: 151, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
101 56 0.37
102 30 0.20
103 40 0.26
104 25 0.17
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTACATTTCAAAGATA
Found at i:72277245 original size:29 final size:29
Alignment explanation
Indices: 72277212--72277275 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
72277202 TAATCCACCA
72277212 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
72277241 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
72277271 CCCAA
1 CCCAA
72277276 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:72277249 original size:30 final size:30
Alignment explanation
Indices: 72277219--72277275 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
72277209 CCACCCAACT
72277219 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
72277248 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
72277276 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:72278554 original size:32 final size:32
Alignment explanation
Indices: 72278513--72278574 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
72278503 AGCATTACCG
*
72278513 AACTTACAACATAATTATACACACTTTTAGAA
1 AACTTACAACACAATTATACACACTTTTAGAA
*
72278545 AACTTACAACACAATTATACATACTTTTAG
1 AACTTACAACACAATTATACACACTTTTAG
72278575 CATACATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (32 bp):
AACTTACAACACAATTATACACACTTTTAGAA
Found at i:72278872 original size:12 final size:12
Alignment explanation
Indices: 72278855--72278885 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
72278845 ACACACACAC
72278855 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
72278867 CCGTGTGCTAGG
1 CCGTGTGCCAGG
72278879 CCGTGTG
1 CCGTGTG
72278886 ACCGAAGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.42, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:72279461 original size:30 final size:30
Alignment explanation
Indices: 72279425--72279485 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
72279415 TAAATAATTA
72279425 TAACATAAAATGGTATTCATTTTTTACCAT
1 TAACATAAAATGGTATTCATTTTTTACCAT
*
72279455 TAACATAAAATGTTATTCATTTTTTACCAT
1 TAACATAAAATGGTATTCATTTTTTACCAT
72279485 T
1 T
72279486 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (30 bp):
TAACATAAAATGGTATTCATTTTTTACCAT
Found at i:72289866 original size:41 final size:41
Alignment explanation
Indices: 72289819--72289963 Score: 184
Period size: 41 Copynumber: 3.5 Consensus size: 41
72289809 CAAATCACAT
72289819 ACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCGCAC
* * *
72289860 ACTAAGTGCCATATATAGCTGAATCTATCTCGATCTTGCAC
1 ACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCGCAC
* * *
72289901 ACTAAGTGCCATATATATTTAGCCGAAGCTATGTCAAAC-CGCAC
1 ACTAAGTGCC--ATATA--TAGCCGAAGCTATCTCGATCTCGCAC
*
72289945 ACTAAGTGCCACATATAGC
1 ACTAAGTGCCATATATAGC
72289964 TGATTTATCG
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
40 4 0.04
41 48 0.53
42 4 0.04
43 5 0.06
44 14 0.16
45 15 0.17
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (41 bp):
ACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCGCAC
Found at i:72295385 original size:46 final size:46
Alignment explanation
Indices: 72295107--72295385 Score: 362
Period size: 46 Copynumber: 6.0 Consensus size: 46
72295097 CTTTGACATC
* * * * *
72295107 TTGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCAATTTC-TGTCATG
1 TTGCCATGGTATCTTTCAACCATGGTCTTA--CA--C-ATTTCATATCAGG
* * ** * * *
72295157 TTGCCATGGTATCTTTCAACCGTGGTATTATTCTTTTCATGTCACG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
** *
72295203 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
72295249 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
*
72295295 TTGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
72295341 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
72295386 AGAGCACACT
Statistics
Matches: 210, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
45 4 0.02
46 181 0.86
50 25 0.12
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
Found at i:72297410 original size:18 final size:18
Alignment explanation
Indices: 72297378--72297412 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72297368 AATTTTTCCC
**
72297378 TTTTTCCTTGTTTCTTTT
1 TTTTTCCTTCCTTCTTTT
72297396 TTTTTCCTTCCTTCTTT
1 TTTTTCCTTCCTTCTTT
72297413 CTTTCTCCTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTTCCTTCCTTCTTTT
Found at i:72300888 original size:25 final size:25
Alignment explanation
Indices: 72300859--72300906 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72300849 TTATAATACG
** *
72300859 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
72300884 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
72300907 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:72300996 original size:18 final size:19
Alignment explanation
Indices: 72300959--72300996 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
72300949 GATTTGATAC
*
72300959 GATATGCACATGATATGTAT
1 GATATACACATGA-ATGTAT
72300979 GATATACACATG-ATGTAT
1 GATATACACATGAATGTAT
72300997 TCATTTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (19 bp):
GATATACACATGAATGTAT
Found at i:72301066 original size:24 final size:25
Alignment explanation
Indices: 72301039--72301122 Score: 107
Period size: 24 Copynumber: 3.4 Consensus size: 25
72301029 GAGGAAGTGC
72301039 AAAAGGGCTATGCCCTAGTTT-CCG
1 AAAAGGGCTATGCCCTAGTTTACCG
*
72301063 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCTAGTTTACCG
* * * *
72301088 AAAATGGCTTCTGCCCTAGTTTATCA
1 AAAAGGGC-TATGCCCTAGTTTACCG
72301114 AAAAGGGCT
1 AAAAGGGCT
72301123 TTTGCCCCAG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 20 0.39
25 11 0.22
26 20 0.39
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTATGCCCTAGTTTACCG
Found at i:72301109 original size:26 final size:26
Alignment explanation
Indices: 72301039--72301134 Score: 108
Period size: 26 Copynumber: 3.8 Consensus size: 26
72301029 GAGGAAGTGC
*
72301039 AAAAGGGC-TATGCCCTAGTTT-CCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
72301063 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * * * *
72301088 AAAATGGCTTCTGCCCTAGTTTATCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
72301114 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
72301135 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
24 20 0.33
25 10 0.16
26 31 0.51
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:72305348 original size:46 final size:46
Alignment explanation
Indices: 72305298--72305473 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
72305288 TGGTTGAGCA
72305298 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
72305344 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
72305389 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72305437 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72305474 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 6, Indels: 22
0.80 0.04 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 1 0.01
46 65 0.58
47 29 0.26
48 1 0.01
50 5 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72305454 original size:93 final size:93
Alignment explanation
Indices: 72305295--72305466 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
72305285 GGATGGTTGA
* * *
72305295 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
72305360 TGAGTCCGAGTTCAAGAGATGTAACTAG
66 TGAGTCCGAGTTCAAGAGATGTAACTAG
* *
72305388 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
72305453 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
72305467 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCAAGAGATGTAACTAG
Found at i:72311688 original size:20 final size:21
Alignment explanation
Indices: 72311649--72311696 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
72311639 TTTGATATAT
*
72311649 ATATGATTTGATACGATATGC
1 ATATGATATGATACGATATGC
*
72311670 ATATGATATG-TATGATATGC
1 ATATGATATGATACGATATGC
*
72311690 ACATGAT
1 ATATGAT
72311697 GTATTCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (21 bp):
ATATGATATGATACGATATGC
Found at i:72311847 original size:51 final size:50
Alignment explanation
Indices: 72311743--72311863 Score: 181
Period size: 51 Copynumber: 2.4 Consensus size: 50
72311733 GAGGAAGTGC
* * *
72311743 AAAAGGGCTATGCTCTAG-TTACCGAAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCTAGTTTACCA
*
72311792 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGC-TTTGCCCTAGTTTACCA
72311843 AAAAGGGCTTTTGCCCTAGTT
1 AAAAGGGC-TTTGCCCTAGTT
72311864 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
49 16 0.25
50 14 0.22
51 23 0.35
52 12 0.18
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCTAGTTTACCA
Found at i:72311865 original size:25 final size:25
Alignment explanation
Indices: 72311743--72311863 Score: 181
Period size: 25 Copynumber: 4.8 Consensus size: 25
72311733 GAGGAAGTGC
* *
72311743 AAAAGGGCTATGCTCTAG-TTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCG
72311767 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCG
72311792 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCG
* *
72311817 AAAAGGGCTTTTGCCCTAGTTTATCA
1 AAAAGGGC-TTTGCCCTAGTTTACCG
72311843 AAAAGGGCTTTTGCCCTAGTT
1 AAAAGGGC-TTTGCCCTAGTT
72311864 ATTAAAAGAG
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
24 16 0.18
25 39 0.43
26 36 0.40
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCG
Found at i:72313784 original size:40 final size:40
Alignment explanation
Indices: 72313684--72313901 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
72313674 TGGATGATAA
*
72313684 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
72313725 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72313765 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72313805 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72313845 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
72313884 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72313902 TACTTGGCTT
Statistics
Matches: 154, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 15 0.10
39 13 0.08
40 98 0.64
41 24 0.16
42 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72315453 original size:31 final size:31
Alignment explanation
Indices: 72315415--72315498 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
72315405 TTGTTACAGT
72315415 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
72315446 AAAGGCTTCAGCCCAGTGATATGAGTAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
72315477 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
72315499 TTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:72321551 original size:29 final size:29
Alignment explanation
Indices: 72321508--72321609 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
72321498 TGAATATGGC
*
72321508 TGGGCCTAACGGGCCATATAAATATGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* * **
72321537 TGGGCCTAATAGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
72321566 TGGGCCTAATGGGTCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
72321594 TAGGCCTAATGAGCCA
1 TGGGCCTAATGGGCCA
72321610 GATACGGGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 14 0.24
29 45 0.76
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:72325447 original size:51 final size:50
Alignment explanation
Indices: 72325374--72325509 Score: 141
Period size: 49 Copynumber: 2.7 Consensus size: 50
72325364 TGTGAGGTCG
* *
72325374 CATGTGTAATACTAAGTACAGGCTACTATGCGTACCCGAAAACTG-TGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCC--AAACTGTTGATCA
* * * * * **
72325425 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGACTGTTGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAACTGTTGATCA
* *
72325474 CATTTGTAGTACTAAATGCAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
72325510 AGATAGCTTC
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
48 5 0.07
49 32 0.46
50 3 0.04
51 29 0.42
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAACTGTTGATCA
Found at i:72330298 original size:13 final size:13
Alignment explanation
Indices: 72330280--72330307 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72330270 ATATCGGGTT
72330280 GTAAGACAGATTG
1 GTAAGACAGATTG
72330293 GTAAGACAGATTG
1 GTAAGACAGATTG
72330306 GT
1 GT
72330308 CCAGTCGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.32, T:0.25
Consensus pattern (13 bp):
GTAAGACAGATTG
Found at i:72332224 original size:29 final size:28
Alignment explanation
Indices: 72332168--72332282 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
72332158 GTGAGCATGA
* **
72332168 ATATAAATGTGACTGGGCCTAACAGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
72332196 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
72332225 ATATACAGGTGATTTTGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
72332254 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
72332282 A
1 A
72332283 GATATAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 27 0.36
29 47 0.64
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:72332279 original size:57 final size:58
Alignment explanation
Indices: 72332183--72332291 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 58
72332173 AATGTGACTG
* *
72332183 GGCCTAACAGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTT
1 GGCCTAACAGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATTTT
** * * *
72332241 GGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATATAGGT
1 GGCCTAACAGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
72332292 ATGTGAATTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.52
58 21 0.48
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (58 bp):
GGCCTAACAGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATTTT
Found at i:72332599 original size:25 final size:26
Alignment explanation
Indices: 72332565--72332618 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
72332555 AAACCATAAT
* *
72332565 TAAGGG-AAAATTACCATAATACCCC
1 TAAGGGAAAAATGACCAAAATACCCC
72332590 TAAGGGAAAAAATGACCAAAATACCCC
1 TAAGGG-AAAAATGACCAAAATACCCC
72332617 TA
1 TA
72332619 GTTGTTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
27 19 0.76
ACGTcount: A:0.48, C:0.22, G:0.13, T:0.17
Consensus pattern (26 bp):
TAAGGGAAAAATGACCAAAATACCCC
Found at i:72335157 original size:47 final size:47
Alignment explanation
Indices: 72335085--72335780 Score: 904
Period size: 47 Copynumber: 14.6 Consensus size: 47
72335075 CCCTTCGGGA
* * * *
72335085 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72335132 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72335179 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72335226 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72335273 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
72335320 CTTATCTCATATATGCATGTTCACATTCATCACA-TCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--A----CAC-TT--TCACATTCATCACATTGGCCATTCGGC
* * *
72335375 CTTATCACACATACACA-TGTTCACATTCATCAGATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72335422 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72335469 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72335516 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72335563 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72335610 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72335657 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
72335706 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72335755 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
72335781 CACAATTATC
Statistics
Matches: 599, Mismatches: 34, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
46 6 0.01
47 452 0.75
48 2 0.00
49 97 0.16
53 3 0.01
54 1 0.00
55 33 0.06
56 5 0.01
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:72338473 original size:24 final size:24
Alignment explanation
Indices: 72338446--72338491 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
72338436 GGATTTGTAA
72338446 AATAGTAATAATTTTGACAATTAC
1 AATAGTAATAATTTTGACAATTAC
*
72338470 AATAGTAGTAATTTTGACAATT
1 AATAGTAATAATTTTGACAATT
72338492 GGTTGGAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (24 bp):
AATAGTAATAATTTTGACAATTAC
Found at i:72339599 original size:27 final size:28
Alignment explanation
Indices: 72339569--72339626 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
72339559 CTCTATGGTA
* * *
72339569 ACAG-AATAGTCTGGGCTTTAGCCCTAT
1 ACAGTAATAGTCTGGGCCTAAGCCCAAT
*
72339596 ACAGTAATAGTGTGGGCCTAAGCCCAAT
1 ACAGTAATAGTCTGGGCCTAAGCCCAAT
72339624 ACA
1 ACA
72339627 ATATCATTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (28 bp):
ACAGTAATAGTCTGGGCCTAAGCCCAAT
Found at i:72339848 original size:27 final size:26
Alignment explanation
Indices: 72339776--72339870 Score: 75
Period size: 27 Copynumber: 3.6 Consensus size: 26
72339766 TAATAATGCA
* * *
72339776 GCATAGCTACCAGAAATAGTAAATGTG
1 GCATAGCCACCAGTAACAGT-AATGTG
** * *
72339803 GCA-AGCCACTGGTATCAGTAATTATG
1 GCATAGCCACCAGTAACAGTAA-TGTG
72339829 GCATAGCCACCAGTAACAGTGAATGTG
1 GCATAGCCACCAGTAACAGT-AATGTG
* *
72339856 ACATAGTCACCAGTA
1 GCATAGCCACCAGTA
72339871 CAATACTTCC
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
25 2 0.04
26 16 0.31
27 32 0.62
28 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
GCATAGCCACCAGTAACAGTAATGTG
Found at i:72340041 original size:27 final size:27
Alignment explanation
Indices: 72340011--72340182 Score: 245
Period size: 27 Copynumber: 6.4 Consensus size: 27
72340001 GGTCATAATC
* *
72340011 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
72340038 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
72340065 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
72340092 GTCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
72340119 GTCATTTTACCCTACAGGAGCATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
72340146 GTCATTTTACCCTACATGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
72340173 ATTATTTTAC
1 GTCATTTTAC
72340183 AAATTGGGGG
Statistics
Matches: 128, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:72340206 original size:27 final size:27
Alignment explanation
Indices: 72340176--72340406 Score: 177
Period size: 27 Copynumber: 8.6 Consensus size: 27
72340166 TATTACGATT
** *
72340176 ATTTTACAAATTGGGGGTATTTTAGTA
1 ATTTTACAAATCAGGGGTATTTCAGTA
*
72340203 ATTTTACAAATC-GGGGATATTTCAATA
1 ATTTTACAAATCAGGGG-TATTTCAGTA
* * ** *
72340230 A-TTCATAAATCAGGACTATTT-TGATA
1 ATTTTACAAATCAGGGGTATTTCAG-TA
* ** *
72340256 ATTTTACCACCCAAGGGTATTTCAGTA
1 ATTTTACAAATCAGGGGTATTTCAGTA
* *
72340283 ATTTCACAAATCAGGGGTATTTCAATA
1 ATTTTACAAATCAGGGGTATTTCAGTA
*
72340310 ATTTTAC-AACCTAGGGGTATTTCAGTA
1 ATTTTACAAATC-AGGGGTATTTCAGTA
* *
72340337 ATTTCAAAAATCAGGGGTATTTC-GATA
1 ATTTTACAAATCAGGGGTATTTCAG-TA
* * *
72340364 ATTTTACAATTC-GAAGGTATTTCGGTA
1 ATTTTACAAATCAG-GGGTATTTCAGTA
*
72340391 ATTTTACAAATTAGGG
1 ATTTTACAAATCAGGG
72340407 TCTTAACGAC
Statistics
Matches: 156, Mismatches: 37, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
26 25 0.16
27 125 0.80
28 6 0.04
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTTTACAAATCAGGGGTATTTCAGTA
Found at i:72340314 original size:54 final size:54
Alignment explanation
Indices: 72340220--72340406 Score: 216
Period size: 54 Copynumber: 3.5 Consensus size: 54
72340210 AAATCGGGGA
* * ** * *
72340220 TATTTCAATAA-TTCATAAATCAGGACTATTTTGATAATTTTACCACCCAAGGG
1 TATTTCAGTAATTTCACAAATCAGGGGTATTTCGATAATTTTACAACCCAAGGG
* * *
72340273 TATTTCAGTAATTTCACAAATCAGGGGTATTTCAATAATTTTACAACCTAGGGG
1 TATTTCAGTAATTTCACAAATCAGGGGTATTTCGATAATTTTACAACCCAAGGG
* * *
72340327 TATTTCAGTAATTTCAAAAATCAGGGGTATTTCGATAATTTTACAATTCGAA-GG
1 TATTTCAGTAATTTCACAAATCAGGGGTATTTCGATAATTTTACAA-CCCAAGGG
* * *
72340381 TATTTCGGTAATTTTACAAATTAGGG
1 TATTTCAGTAATTTCACAAATCAGGG
72340407 TCTTAACGAC
Statistics
Matches: 114, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
53 10 0.09
54 102 0.89
55 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (54 bp):
TATTTCAGTAATTTCACAAATCAGGGGTATTTCGATAATTTTACAACCCAAGGG
Found at i:72340644 original size:18 final size:18
Alignment explanation
Indices: 72340614--72340648 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
72340604 TTATCCGTGT
72340614 GGCCCCACGAGCCCATTG
1 GGCCCCACGAGCCCATTG
72340632 GGCCCACAC-AGCCCATT
1 GGCCC-CACGAGCCCATT
72340649 TCGACCCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.20, C:0.46, G:0.23, T:0.11
Consensus pattern (18 bp):
GGCCCCACGAGCCCATTG
Found at i:72341207 original size:51 final size:51
Alignment explanation
Indices: 72341124--72341224 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
72341114 TGATCGCAAG
72341124 CTTGTGTGGCACAATACGCCATATTCCTGGCTTTTCGGCATTTTGCCGATT
1 CTTGTGTGGCACAATACGCCATATTCCTGGCTTTTCGGCATTTTGCCGATT
*
72341175 CTTGTGTTGCACAATACGCCATATTACC-GGCTTTTCGGCATTTTGCCGAT
1 CTTGTGTGGCACAATACGCCATATT-CCTGGCTTTTCGGCATTTTGCCGAT
72341225 CTACAGTCAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 46 0.96
52 2 0.04
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.37
Consensus pattern (51 bp):
CTTGTGTGGCACAATACGCCATATTCCTGGCTTTTCGGCATTTTGCCGATT
Found at i:72344364 original size:33 final size:33
Alignment explanation
Indices: 72344288--72344353 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
72344278 GATTTTGGGC
* *
72344288 CAAGCCGTATGATCCACATGGACAAGGCCAATT
1 CAAGCCGTGTGATCCACACGGACAAGGCCAATT
*
72344321 CAAGCCGTGTGATCCACACGGCCAAGGCCAATT
1 CAAGCCGTGTGATCCACACGGACAAGGCCAATT
72344354 TAGACTGTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (33 bp):
CAAGCCGTGTGATCCACACGGACAAGGCCAATT
Found at i:72346964 original size:10 final size:10
Alignment explanation
Indices: 72346949--72346991 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
72346939 CAATTCACCA
72346949 ACCAAATCAT
1 ACCAAATCAT
*
72346959 ACCAAATCTAA
1 ACCAAATC-AT
72346970 ACCAAAATCAT
1 ACC-AAATCAT
*
72346981 ACCAAAGCAT
1 ACCAAATCAT
72346991 A
1 A
72346992 TGTTTCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:72348875 original size:39 final size:40
Alignment explanation
Indices: 72348830--72348997 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
72348820 CGGGGTTTAG
* * *
72348830 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
72348869 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
72348909 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
72348949 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
72348990 CCGGATAT
1 CCGGATAT
72348998 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:72348980 original size:41 final size:40
Alignment explanation
Indices: 72348853--72348997 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
72348843 CTCGCACAAG
* * * * *
72348853 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
72348893 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
72348933 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
72348974 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
72348998 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:72350239 original size:37 final size:34
Alignment explanation
Indices: 72350182--72350252 Score: 99
Period size: 33 Copynumber: 2.0 Consensus size: 34
72350172 CAAGAACTCC
72350182 TTCCTCCTTCCTTAGATCGGCC-AAAGAAATGAA
1 TTCCTCCTTCCTTAGATCGGCCAAAAGAAATGAA
72350215 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAG-A---TCGGCCAAAAGAAATGAA
72350253 AAAGGATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
33 15 0.45
34 1 0.03
37 6 0.18
38 11 0.33
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (34 bp):
TTCCTCCTTCCTTAGATCGGCCAAAAGAAATGAA
Found at i:72362722 original size:13 final size:13
Alignment explanation
Indices: 72362704--72362728 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72362694 ACAAACGATA
72362704 AAATTTTCACACG
1 AAATTTTCACACG
72362717 AAATTTTCACAC
1 AAATTTTCACAC
72362729 ATATCATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:72364660 original size:97 final size:97
Alignment explanation
Indices: 72364551--72364790 Score: 268
Period size: 97 Copynumber: 2.4 Consensus size: 97
72364541 AATTTTAGGG
* * ** * *
72364551 TTTTAAGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTACT-AATTTT
1 TTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA-TAAATTTA
*
72364615 AAAAAAATTAGATTATGATTTAGTGTTTATGGT
65 AAAAAAATTAGATTAAGATTTAGTGTTTATGGT
* *
72364648 TTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTAA
1 TTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTAA
*
72364713 AAAAAATTAGATTAAGATTTTAGGGCTTAGGGTTTTAGGGT
66 AAAAAATTAGATTAAGA-TTTA--G--T---G-TTTATGGT
* *
72364754 ATTTAAG-AAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTT
72364791 TAGGGTAACT
Statistics
Matches: 121, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
96 1 0.01
97 71 0.59
98 4 0.03
100 1 0.01
102 1 0.01
105 30 0.25
106 13 0.11
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (97 bp):
TTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTAA
AAAAAATTAGATTAAGATTTAGTGTTTATGGT
Found at i:72365080 original size:103 final size:103
Alignment explanation
Indices: 72364901--72365104 Score: 345
Period size: 103 Copynumber: 2.0 Consensus size: 103
72364891 TCTGTGAAAA
* * *
72364901 TAGTGTCAAAAACGCTTCAATCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTG
1 TAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTA
*
72364966 GATGCTCTTTTGCTACAGTAGTATCTGAAAAAATAACT
66 GACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAACT
*
72365004 TAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCCACGTA
1 TAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTA
* *
72365069 GACGCTTTTTTGCTACAGTAGTCTCTGAAAAAATAA
66 GACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAA
72365105 TTTTGAAAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 94 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (103 bp):
TAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCACGTA
GACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAACT
Found at i:72365157 original size:126 final size:126
Alignment explanation
Indices: 72365004--72365335 Score: 513
Period size: 126 Copynumber: 2.6 Consensus size: 126
72364994 AAAAATAACT
* * * *
72365004 TAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCCACGTA
1 TAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCCACGTG
*
72365069 GACGCTTTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAAA
66 GACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAAA
* * *
72365130 TAGTGGT-AAAAACACTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCCACGT
1 TAGT-GTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCCACGT
* * * * *
72365194 GGATGCTCTTTTACTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAAA
65 GGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAAA
* *
72365256 TAGTGTCAAAAATGCTTCAAGCAGGATGCATTTTCAGCAAAAGTTCTGAAAGAAGCTCCCACGTG
1 TAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCCACGTG
72365321 GACGCTCTTTTGCTA
66 GACGCTCTTTTGCTA
72365336 TAGTGGTTTC
Statistics
Matches: 185, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
125 2 0.01
126 181 0.98
127 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (126 bp):
TAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCCACGTG
GACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAAAAGACGTGTCTGCACAAA
Found at i:72369837 original size:79 final size:81
Alignment explanation
Indices: 72369701--72369883 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
72369691 TCGAATGATG
* *
72369701 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
72369765 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
72369780 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
72369842 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
72369860 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72369884 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:72369899 original size:40 final size:40
Alignment explanation
Indices: 72369702--72369885 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
72369692 CGAATGATGT
* * * *
72369702 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72369742 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
72369782 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72369820 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72369861 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72369886 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Done.