Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 218 of 332
Found at i:72369907 original size:79 final size:79
Alignment explanation
Indices: 72369754--72369918 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
72369744 GGACTAAGAT
* **
72369754 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
72369819 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
72369833 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
72369896 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72369912 CCGAAGG
1 CCGAAGG
72369919 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72371738 original size:54 final size:54
Alignment explanation
Indices: 72371671--72371968 Score: 239
Period size: 54 Copynumber: 5.2 Consensus size: 54
72371661 CAAAACATTT
*
72371671 CTTTATTTAAAATAATTTTCATTTTATTAAAAATATAAAAGTAAATTATAATTA
1 CTTTATTTAAAATAATTTTCATTTTATTAAAAATATAAAAGTAAATTAAAATTA
* * *
72371725 CTTTATTTAAAATAACCTTTT-ATATTATCACATGAAATAATATAAAA--ATATTCAAAATGTTG
1 CTTTATTTAAAATAA--TTTTCAT-TT-T---ATTAAA-AATATAAAAGTAAATT-AAAA--TTA
* *
72371787 CCTTATTTAAAATAATTTTCATTTTATTAAAAATATAAAAGTAAATTACAATTA
1 CTTTATTTAAAATAATTTTCATTTTATTAAAAATATAAAAGTAAATTAAAATTA
* * * *
72371841 CTTTATTTAAAACAACATTTT-ATCTAATTACATGAAATAATATAAAA--ACATTCAAAATGTTG
1 CTTTATTTAAAA-TA-ATTTTCAT-T--TT--ATTAAA-AATATAAAAGTAAATT-AAAA--TTA
* * *
72371903 CCTTATTTAAAATAATTTCCATTTTATTAAAAATATAAAAGTAAATTATAATTA
1 CTTTATTTAAAATAATTTTCATTTTATTAAAAATATAAAAGTAAATTAAAATTA
72371957 CTTTATTTAAAA
1 CTTTATTTAAAA
72371969 CAACCTTTTA
Statistics
Matches: 193, Mismatches: 23, Indels: 56
0.71 0.08 0.21
Matches are distributed among these distances:
54 41 0.21
55 23 0.12
56 28 0.15
57 9 0.05
58 4 0.02
59 9 0.05
60 27 0.14
61 23 0.12
62 29 0.15
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (54 bp):
CTTTATTTAAAATAATTTTCATTTTATTAAAAATATAAAAGTAAATTAAAATTA
Found at i:72371797 original size:62 final size:59
Alignment explanation
Indices: 72371632--72372017 Score: 208
Period size: 54 Copynumber: 6.6 Consensus size: 59
72371622 TTATTTATAT
* ** * *
72371632 TTTATTACATGAAATAATATAAAAATATTCAAAACATTTCTTTATTTAAAATAA-TTTTCA
1 TTTA-TACATGAAATAATATAAAAAAATTCAAAATGTTGCCTTATTTAAAATAACTTTT-A
* * * *
72371692 TTT-T--ATTAAA-AATATAAAAGTAAATT-ATAA--TTACTTTATTTAAAATAACCTTTTA
1 TTTATACATGAAATAATATAAAA--AAATTCAAAATGTTGCCTTATTTAAAATAA-CTTTTA
*
72371747 TATTATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAA-TTTTCA
1 T-TTAT-ACATGAAATAATATAAAAAAATTCAAAATGTTGCCTTATTTAAAATAACTTTT-A
* * * * *
72371808 TTT-T--ATTAAA-AATATAAAAGTAAATT-ACAA--TTACTTTATTTAAAACAACATTTTA
1 TTTATACATGAAATAATATAAAA--AAATTCAAAATGTTGCCTTATTTAAAATAAC-TTTTA
* * *
72371863 TCTAATTACATGAAATAATATAAAAACATTCAAAATGTTGCCTTATTTAAAATAA-TTTCCA
1 T-TTA-TACATGAAATAATATAAAAAAATTCAAAATGTTGCCTTATTTAAAATAACTTT-TA
* * * * *
72371924 TTT-T--ATTAAA-AATATAAAAGTAAATT-ATAA--TTACTTTATTTAAAACAACCTTTTA
1 TTTATACATGAAATAATATAAAA--AAATTCAAAATGTTGCCTTATTTAAAATAA-CTTTTA
* *
72371979 TCTAATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 T-TTA-TACATGAAATAATATAAAAAAATTCAAAATGTT
72372018 TGTACAAATA
Statistics
Matches: 250, Mismatches: 35, Indels: 80
0.68 0.10 0.22
Matches are distributed among these distances:
54 47 0.19
55 33 0.13
56 39 0.16
57 13 0.05
58 4 0.02
59 13 0.05
60 37 0.15
61 31 0.12
62 33 0.13
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (59 bp):
TTTATACATGAAATAATATAAAAAAATTCAAAATGTTGCCTTATTTAAAATAACTTTTA
Found at i:72371807 original size:116 final size:116
Alignment explanation
Indices: 72371635--72372017 Score: 649
Period size: 116 Copynumber: 3.3 Consensus size: 116
72371625 TTTATATTTT
** * *
72371635 ATTACATGAAATAATATAAAAATATTCAAAACATTTCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
* * *
72371700 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAATAACCTTTTATATT
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
*
72371751 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
* *
72371816 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACATTTTATCTA
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
* *
72371867 ATTACATGAAATAATATAAAAACATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
72371932 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
*
72371983 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
72372018 TGTACAAATA
Statistics
Matches: 251, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 251 1.00
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTA
AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:72373016 original size:24 final size:26
Alignment explanation
Indices: 72372987--72373048 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 26
72372977 ATTGAAACTA
*
72372987 TATAAAAATGA-TA-AATTTGAATAC
1 TATAAAAATGATTATAATTCGAATAC
72373011 TATAAAAATTTGATTATTAATTCGAATAC
1 TATAAAAA--TGATTA-TAATTCGAATAC
72373040 TATAAAAAT
1 TATAAAAAT
72373049 TTTTAAATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
24 8 0.25
26 3 0.09
27 3 0.09
29 18 0.56
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (26 bp):
TATAAAAATGATTATAATTCGAATAC
Found at i:72373021 original size:17 final size:17
Alignment explanation
Indices: 72372999--72373050 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
72372989 TAAAAATGAT
72372999 AAATTTGAATACTATAA
1 AAATTTGAATACTATAA
72373016 AAATTTG-AT--TAT--
1 AAATTTGAATACTATAA
* *
72373028 TAATTCGAATACTATAA
1 AAATTTGAATACTATAA
72373045 AAATTT
1 AAATTT
72373051 TTAAATAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 10
0.65 0.10 0.25
Matches are distributed among these distances:
12 5 0.19
13 2 0.08
14 3 0.12
15 3 0.12
16 2 0.08
17 11 0.42
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (17 bp):
AAATTTGAATACTATAA
Found at i:72374842 original size:91 final size:91
Alignment explanation
Indices: 72374687--72374870 Score: 341
Period size: 91 Copynumber: 2.0 Consensus size: 91
72374677 TACTAAAACT
*
72374687 TTCAATTGAGCAATTTATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
72374752 TACATAACTCTGTCACTAATATCGCA
66 TACATAACTCTGTCACTAATATCGCA
*
72374778 TTCAATTGAGCAATTCCTAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
1 TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
*
72374843 TACATAACTCTGTCACTAATATTGCA
66 TACATAACTCTGTCACTAATATCGCA
72374869 TT
1 TT
72374871 TACAGAGCAT
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (91 bp):
TTCAATTGAGCAATTCATAAACCATGATAGTTCAAATCAAAACAAATCACTCTTTGATATTTAAA
TACATAACTCTGTCACTAATATCGCA
Found at i:72375412 original size:20 final size:20
Alignment explanation
Indices: 72375389--72375427 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
72375379 AAGAAATGTG
*
72375389 CAAACAGAGGCACCAAAGTA
1 CAAACAGAGACACCAAAGTA
72375409 CAAACAGAGACACCAAAGT
1 CAAACAGAGACACCAAAGT
72375428 GCAATCCCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.26, G:0.18, T:0.05
Consensus pattern (20 bp):
CAAACAGAGACACCAAAGTA
Found at i:72376301 original size:43 final size:42
Alignment explanation
Indices: 72376217--72376300 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
72376207 GAAGGTAAGG
72376217 GTCTTGATCTATTTTTTTTAAAAAAGTCCCATGAAATAAAAA
1 GTCTTGATCTATTTTTTTTAAAAAAGTCCCATGAAATAAAAA
* *
72376259 GTCTTGATCTATTTGTTTTT-AAAAAGTCCCATGGAAGAAAAA
1 GTCTTGATCTATTT-TTTTTAAAAAAGTCCCATGAAATAAAAA
72376301 AAAATATCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 34 0.87
43 5 0.13
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (42 bp):
GTCTTGATCTATTTTTTTTAAAAAAGTCCCATGAAATAAAAA
Found at i:72377796 original size:48 final size:48
Alignment explanation
Indices: 72377739--72377871 Score: 167
Period size: 48 Copynumber: 2.8 Consensus size: 48
72377729 TAGGGTTATG
* * *
72377739 TGTGATCCCATGTAAGGCCATGTCTGGGACATGGCATTAGCATCGATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCAATA
* * *
72377787 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCAATA
* ** * *
72377835 TATGATTTCGTATAAGACCATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
72377872 CGATATGAGC
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCAATA
Found at i:72377893 original size:42 final size:40
Alignment explanation
Indices: 72377842--72377956 Score: 99
Period size: 43 Copynumber: 2.8 Consensus size: 40
72377832 ATATATGATT
*
72377842 TCGTATAAGACCATGTCTGGGACATGGCATCGATATGAGCCA
1 TCGTGTAAGACCATGTCTGGGACATGGCATCGATATGAG--A
* * * *
72377884 TCGTGTAAGACCATAG-CTAGG-CTATCGGCTTCGATCTGTGA
1 TCGTGTAAGACCAT-GTCTGGGAC-AT-GGCATCGATATGAGA
*
72377925 TCCCATGTAAGACCATGTCTGGGACATGGCAT
1 T--CGTGTAAGACCATGTCTGGGACATGGCAT
72377957 TGGTATCAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
41 3 0.05
42 24 0.41
43 30 0.52
44 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGA
Found at i:72379313 original size:46 final size:46
Alignment explanation
Indices: 72379263--72379434 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
72379253 TGGTTGAGCA
*
72379263 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72379309 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
72379354 CACCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72379401 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72379435 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 85 0.82
47 3 0.03
49 4 0.04
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72386857 original size:46 final size:46
Alignment explanation
Indices: 72386805--72386929 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
72386795 GGTTGAGCAT
* * *
72386805 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
72386851 CTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
72386897 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72386930 GGGGCAGGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:72389658 original size:31 final size:31
Alignment explanation
Indices: 72389623--72389691 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
72389613 AGCCACAGGG
*
72389623 GCGTGTGTGATCATACGGCCTACCCACACGA
1 GCGTGTGTGATCACACGGCCTACCCACACGA
72389654 GCGTGTGTGATCACACGGCCTACCCACACGA
1 GCGTGTGTGATCACACGGCCTACCCACACGA
72389685 GCGTGTG
1 GCGTGTG
72389692 ACCCTCCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (31 bp):
GCGTGTGTGATCACACGGCCTACCCACACGA
Found at i:72409226 original size:39 final size:39
Alignment explanation
Indices: 72409172--72409254 Score: 166
Period size: 39 Copynumber: 2.1 Consensus size: 39
72409162 CAATCTTTTC
72409172 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
1 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
72409211 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
1 AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
72409250 AATTA
1 AATTA
72409255 ATCATGATCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (39 bp):
AATTATTAAAAATTCAAAAGAAATAATGCATTACTCCAG
Found at i:72412288 original size:27 final size:27
Alignment explanation
Indices: 72412247--72412507 Score: 173
Period size: 27 Copynumber: 9.7 Consensus size: 27
72412237 CTTTAATTTT
** *
72412247 TAAAATTACCAAAATACCCCTAGCTTG
1 TAAAATTACTGAAATACCCCTAGTTTG
** *
72412274 TAAAATTACTGAAATACCCCCGGATTG
1 TAAAATTACTGAAATACCCCTAGTTTG
* *
72412301 TAAAATTACTAAAATA-CGCT-GATTTG
1 TAAAATTACTGAAATACCCCTAG-TTTG
72412327 TAAAATTA-TCGAAATACCCCTAGTTTG
1 TAAAATTACT-GAAATACCCCTAGTTTG
* *
72412354 TAAAATTAATGAAATA-CTCTCAGTTTG
1 TAAAATTACTGAAATACCCCT-AGTTTG
* *
72412381 TAAAATTACTAAAATA-CCCTCAATTTG
1 TAAAATTACTGAAATACCCCT-AGTTTG
* * *
72412408 TAAAATTA-TCGAAATA-CTCTTGTAGTG
1 TAAAATTACT-GAAATACCCCTAGT-TTG
* * **
72412435 TAAAATTATTGAAATA-CCCTTGTAGAG
1 TAAAATTACTGAAATACCCCTAGT-TTG
* *
72412462 TAAAATTA-TCGAAATA-CCCTTGTAGTG
1 TAAAATTACT-GAAATACCCCTAGT-TTG
*
72412489 TAAAATTATTGAAATACCC
1 TAAAATTACTGAAATACCC
72412508 TTGTAGTGTA
Statistics
Matches: 198, Mismatches: 24, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
25 2 0.01
26 24 0.12
27 166 0.84
28 6 0.03
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCCTAGTTTG
Found at i:72412341 original size:53 final size:54
Alignment explanation
Indices: 72412271--72412415 Score: 170
Period size: 53 Copynumber: 2.7 Consensus size: 54
72412261 TACCCCTAGC
* * *
72412271 TTGTAAAATTACTGAAATACCCCCGGATTGTAAAATTACTAAAATACGCTGA-T
1 TTGTAAAATTACTGAAATACCCCCAGATTGTAAAATTAATAAAATACGCTCAGT
* * * *
72412324 TTGTAAAATTA-TCGAAATACCCCTAGTTTGTAAAATTAATGAAATACTCTCAGT
1 TTGTAAAATTACT-GAAATACCCCCAGATTGTAAAATTAATAAAATACGCTCAGT
* *
72412378 TTGTAAAATTACTAAAATACCCTCA-ATTTGTAAAATTA
1 TTGTAAAATTACTGAAATACCCCCAGA-TTGTAAAATTA
72412416 TCGAAATACT
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 43 0.56
54 32 0.42
55 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (54 bp):
TTGTAAAATTACTGAAATACCCCCAGATTGTAAAATTAATAAAATACGCTCAGT
Found at i:72412382 original size:80 final size:81
Alignment explanation
Indices: 72412241--72412453 Score: 268
Period size: 80 Copynumber: 2.6 Consensus size: 81
72412231 GTAAGACTTT
* * * * * *
72412241 AATTTTTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACTGAAATACCCCCGGATTGTAAAA
1 AATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTAATGAAATACCCCCAGATTGTAAAA
*
72412306 TTACTAAAATACGCT-
66 TTACTAAAATACCCTC
* * * *
72412321 GATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTAATGAAATACTCTCAGTTTGTAAAA
1 AATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTAATGAAATACCCCCAGATTGTAAAA
72412386 TTACTAAAATACCCTC
66 TTACTAAAATACCCTC
* * * *
72412402 AATTTGTAAAATTATCGAAATA-CTCTTGTAGTGTAAAATTATTGAAATACCC
1 AATTTGTAAAATTATCGAAATACCCCTAGT-TTGTAAAATTAATGAAATACCC
72412454 TTGTAGAGTA
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 74 0.65
81 40 0.35
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.33
Consensus pattern (81 bp):
AATTTGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTAATGAAATACCCCCAGATTGTAAAA
TTACTAAAATACCCTC
Found at i:72412441 original size:81 final size:80
Alignment explanation
Indices: 72412272--72412602 Score: 327
Period size: 81 Copynumber: 4.1 Consensus size: 80
72412262 ACCCCTAGCT
* * * * *
72412272 TGTAAAATTACTGAAATACCC-CCGGATTGTAAAATTACTAAAATACGCTGATTTGTAAAATTAT
1 TGTAAAATTAATGAAATACCCTCTGTAGTGTAAAATTACTAAAATACCCT-ATTTGTAAAATTAT
* *
72412336 CGAAATACCCCTAGT-T
65 CGAAATA-CCCTTGTAG
* * *
72412352 TGTAAAATTAATGAAATACTCTCAGT-TTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTA
1 TGTAAAATTAATGAAATACCCTCTGTAGTGTAAAATTACTAAAATACCCT--ATTTGTAAAATTA
*
72412416 TCGAAATACTCTTGTAG
64 TCGAAATACCCTTGTAG
* * *
72412433 TGTAAAATTATTGAAATACCCT-TGTAGAGTAAAATTA-TCGAAATACCCT-TGTAGTGTAAAAT
1 TGTAAAATTAATGAAATACCCTCTGTAGTGTAAAATTACT-AAAATACCCTAT-T--TGTAAAAT
*
72412495 TATTGAAATACCCTTGTAG
62 TATCGAAATACCCTTGTAG
* * *
72412514 TGTAAAATT-ATCGAAATATCCT-TGTAGTGTAAAATTACCAAAATACCCTTTTAATGTAAAATT
1 TGTAAAATTAAT-GAAATACCCTCTGTAGTGTAAAATTACTAAAATACCCTATT--TGTAAAATT
*
72412577 ATCGAAATACCCCTGTAG
63 ATCGAAATACCCTTGTAG
*
72412595 AGTAAAAT
1 TGTAAAAT
72412603 GACTGTTTTG
Statistics
Matches: 214, Mismatches: 26, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.00
79 1 0.00
80 50 0.23
81 161 0.75
82 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (80 bp):
TGTAAAATTAATGAAATACCCTCTGTAGTGTAAAATTACTAAAATACCCTATTTGTAAAATTATC
GAAATACCCTTGTAG
Found at i:72412508 original size:27 final size:27
Alignment explanation
Indices: 72412325--72412602 Score: 296
Period size: 27 Copynumber: 10.3 Consensus size: 27
72412315 TACGCTGATT
* *
72412325 TGTAAAATTATCGAAATACCCCTAGT-T
1 TGTAAAATTATCGAAATA-CCCTTGTAG
* * *
72412352 TGTAAAATTAAT-GAAATACTCTCAGT-T
1 TGTAAAATT-ATCGAAATACCCT-TGTAG
* ** *
72412379 TGTAAAATTA-CTAAAATACCC-TCAATT
1 TGTAAAATTATC-GAAATACCCTTGTA-G
*
72412406 TGTAAAATTATCGAAATACTCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72412433 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72412460 AGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72412487 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72412514 TGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
72412541 TGTAAAATTACCAAAATACCCTTTTAA
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72412568 TGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
72412595 AGTAAAAT
1 TGTAAAAT
72412603 GACTGTTTTG
Statistics
Matches: 213, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.02
27 204 0.96
28 5 0.02
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:72412617 original size:54 final size:54
Alignment explanation
Indices: 72412272--72412607 Score: 296
Period size: 54 Copynumber: 6.2 Consensus size: 54
72412262 ACCCCTAGCT
** * * * * *
72412272 TGTAAAATTACTGAAATACCCCCGGATTGTAAAATTA-CTAAAATACGC-TG-ATT
1 TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATC-GAAATACCCTTGTA-G
* * * * *
72412325 TGTAAAATTA-TCGAAATACCCCTAGT-TTGTAAAATTAAT-GAAATACTCTCAGT-T
1 TGTAAAATTACT-GAAATA-CCCTTGTAATGTAAAATT-ATCGAAATACCCT-TGTAG
* * *
72412379 TGTAAAATTACTAAAATACCC-T-CAATTTGTAAAATTATCGAAATACTCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAA--TGTAAAATTATCGAAATACCCTTGTAG
*
72412433 TGTAAAATTATTGAAATACCCTTGTAGA-GTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTA-ATGTAAAATTATCGAAATACCCTTGTAG
* * *
72412487 TGTAAAATTATTGAAATACCCTTGTAGTGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATCGAAATACCCTTGTAG
** * *
72412541 TGTAAAATTACCAAAATACCCTTTTAATGTAAAATTATCGAAATACCCCTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATCGAAATACCCTTGTAG
* *
72412595 AGTAAAATGACTG
1 TGTAAAATTACTG
72412608 TTTTGCCCTT
Statistics
Matches: 237, Mismatches: 29, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
52 1 0.00
53 40 0.17
54 191 0.81
55 3 0.01
56 1 0.00
57 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (54 bp):
TGTAAAATTACTGAAATACCCTTGTAATGTAAAATTATCGAAATACCCTTGTAG
Found at i:72412705 original size:34 final size:34
Alignment explanation
Indices: 72412652--72412744 Score: 141
Period size: 34 Copynumber: 2.7 Consensus size: 34
72412642 ATGAATTTGG
*
72412652 CTGATTTGACTGTGGTTGTATGACTGTGTTTTAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
*
72412686 CTGAATTGACTGTGATTGTATGACTGTGTTTTAA
1 CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
** *
72412720 CTGGCTTGACTGTGGTTATATGACT
1 CTGAATTGACTGTGGTTGTATGACT
72412745 AACATGCTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.44
Consensus pattern (34 bp):
CTGAATTGACTGTGGTTGTATGACTGTGTTTTAA
Found at i:72414752 original size:22 final size:21
Alignment explanation
Indices: 72414725--72414771 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
72414715 TGTGTCATAG
*
72414725 TCACACAGCCGTGTGCCTCCT
1 TCACACAGCCATGTGCCTCCT
* *
72414746 CTCACACGGGCATGTGCCTCCT
1 -TCACACAGCCATGTGCCTCCT
72414768 TCAC
1 TCAC
72414772 TTGGGCATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.15, C:0.43, G:0.19, T:0.23
Consensus pattern (21 bp):
TCACACAGCCATGTGCCTCCT
Found at i:72414777 original size:21 final size:22
Alignment explanation
Indices: 72414736--72414781 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
72414726 CACACAGCCG
72414736 TGTGCCTCCTCTCACACGGGCA
1 TGTGCCTCCTCTCACACGGGCA
**
72414758 TGTGCCTCCT-TCACTTGGGCA
1 TGTGCCTCCTCTCACACGGGCA
72414779 TGT
1 TGT
72414782 TTCAGAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.11, C:0.35, G:0.24, T:0.30
Consensus pattern (22 bp):
TGTGCCTCCTCTCACACGGGCA
Found at i:72417094 original size:52 final size:52
Alignment explanation
Indices: 72417021--72417220 Score: 175
Period size: 52 Copynumber: 3.9 Consensus size: 52
72417011 GACGGAAAAT
* ** *
72417021 ATGTGATATATGATTTGGTATAAGACCATAGCCGGGCTATGGCATCGGTACA
1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* ***
72417073 ATGTGAT-TCGTG-TTCCCGTATAAGACCATAGCTAGGCTATGGCATCGGTGTG
1 ATGTGATAT-GTGATT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * *
72417125 ATGTGATAATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGGT---
1 ATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * *
72417175 A--TGATATGTGA-TCCGTGTAAGACCAT-GGTAGGGCTATGGCTTCGGT
1 ATGTGATATGTGATTCCGTATAAGACCATAGCT-GGGCTATGGCATCGGT
72417221 GTGTGATGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 18
0.77 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 27 0.22
47 6 0.05
48 4 0.03
50 1 0.01
51 3 0.02
52 46 0.37
53 33 0.27
54 3 0.02
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (52 bp):
ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
Found at i:72417170 original size:53 final size:52
Alignment explanation
Indices: 72417021--72417179 Score: 180
Period size: 52 Copynumber: 3.0 Consensus size: 52
72417011 GACGGAAAAT
* * **
72417021 ATGTGATATATGATT-TGGTATAAGACCATAGCCGGGCTATGGCATCGGTACA
1 ATGTGATATGTGATTCT-GTATAAGACCATAGCTGGGCTATGGCATCGGTATG
* * *
72417073 ATGTGAT-TCGTG-TTCCCGTATAAGACCATAGCTAGGCTATGGCATCGGTGTG
1 ATGTGATAT-GTGATT-CTGTATAAGACCATAGCTGGGCTATGGCATCGGTATG
* *
72417125 ATGTGATAATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGGTATG
1 ATGTGAT-ATGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTATG
72417178 AT
1 AT
72417180 ATGTGATCCG
Statistics
Matches: 89, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
51 3 0.03
52 46 0.52
53 37 0.42
54 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (52 bp):
ATGTGATATGTGATTCTGTATAAGACCATAGCTGGGCTATGGCATCGGTATG
Found at i:72430150 original size:25 final size:25
Alignment explanation
Indices: 72430116--72430166 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
72430106 ACAAGCATAG
*
72430116 ATTAAGTGAGGGGGATAAAAATGGT
1 ATTAAGTGAGGGGGATAAAAACGGT
*
72430141 ATTAAGTGAGGGGGATGAAAACGGT
1 ATTAAGTGAGGGGGATAAAAACGGT
72430166 A
1 A
72430167 AGTATGCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.37, T:0.22
Consensus pattern (25 bp):
ATTAAGTGAGGGGGATAAAAACGGT
Found at i:72434337 original size:13 final size:13
Alignment explanation
Indices: 72434319--72434343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72434309 ACAAATGATA
72434319 AAATTTTCACACG
1 AAATTTTCACACG
72434332 AAATTTTCACAC
1 AAATTTTCACAC
72434344 ATATAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:72437275 original size:17 final size:17
Alignment explanation
Indices: 72437233--72437278 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
72437223 AGTTTACCCG
72437233 TATGGGGCCCACGAGCC
1 TATGGGGCCCACGAGCC
* *
72437250 TGTGGGGCCCACGAGCT
1 TATGGGGCCCACGAGCC
*
72437267 TATGAGGCCCAC
1 TATGGGGCCCAC
72437279 ACGGTTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (17 bp):
TATGGGGCCCACGAGCC
Found at i:72439373 original size:3 final size:3
Alignment explanation
Indices: 72439365--72439390 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
72439355 TATGTAAGTA
72439365 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
72439391 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:72443133 original size:28 final size:28
Alignment explanation
Indices: 72443068--72443194 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
72443058 CATGAGATTG
* ** *
72443068 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-TGATTATATA
72443097 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72443125 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
72443153 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
72443181 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72443195 GGCTTATTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
27 1 0.01
28 73 0.80
29 17 0.19
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72445540 original size:55 final size:55
Alignment explanation
Indices: 72445405--72445541 Score: 148
Period size: 55 Copynumber: 2.5 Consensus size: 55
72445395 GTCCATGCCT
* * **
72445405 GTGTTGTTTTGGCAGGTTTGCCCACGGTTGCTCGGCACGGGTGTGTCCCACGCCC
1 GTGTTATTTTGGCAGGTTTGCCCATGGTTGCAAGGCACGGGTGTGTCCCACGCCC
* * ** * * * **
72445460 ATGTTAATTTGATAGGTTTGGCCATGGTTTCAATGCACGGGTGTGTCGTACGCCC
1 GTGTTATTTTGGCAGGTTTGCCCATGGTTGCAAGGCACGGGTGTGTCCCACGCCC
*
72445515 GTGTTATTTTGGCAGATTTGCCCATGG
1 GTGTTATTTTGGCAGGTTTGCCCATGG
72445542 CCATGTCGCA
Statistics
Matches: 63, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.13, C:0.22, G:0.31, T:0.34
Consensus pattern (55 bp):
GTGTTATTTTGGCAGGTTTGCCCATGGTTGCAAGGCACGGGTGTGTCCCACGCCC
Found at i:72465406 original size:19 final size:20
Alignment explanation
Indices: 72465384--72465422 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72465374 TTGCAATTTA
72465384 AATTTT-TATTTTAATTTCT
1 AATTTTCTATTTTAATTTCT
* *
72465403 AATTTTCTCTTTTATTTTCT
1 AATTTTCTATTTTAATTTCT
72465423 TCTGGCAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (20 bp):
AATTTTCTATTTTAATTTCT
Found at i:72475026 original size:13 final size:13
Alignment explanation
Indices: 72475008--72475032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72474998 ACAAATGATA
72475008 AAATTTTCACACG
1 AAATTTTCACACG
72475021 AAATTTTCACAC
1 AAATTTTCACAC
72475033 ATATCATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:72478392 original size:3 final size:3
Alignment explanation
Indices: 72478384--72478437 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
72478374 AGTGGCTTAA
* * * * *
72478384 ATT ATT ATT ATC ATT ATT ATT ACT ACT ATT ATT ATT ATT AATA AAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
72478430 ATT ATT AT
1 ATT ATT AT
72478438 CCTTTTTTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
3 40 0.95
4 2 0.05
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:72479668 original size:27 final size:27
Alignment explanation
Indices: 72479638--72479792 Score: 181
Period size: 27 Copynumber: 5.7 Consensus size: 27
72479628 TACTGAAATG
*
72479638 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
* * *
72479665 CCCTCAATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTATTTTA
72479692 CCCTCGATTT-CTAGAATTACTATTTTA
1 CCCTCGATTTAC-AGAATTACTATTTTA
* * *
72479719 CCATCGATTTATAGAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-ATTTTA
72479746 CCCTCGATTTACAGAATTA-TCATTTTA
1 CCCTCGATTTACAGAATTACT-ATTTTA
* *
72479773 CCATCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
72479793 CAAAATACCC
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
26 2 0.02
27 107 0.98
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTATTTTA
Found at i:72479700 original size:54 final size:55
Alignment explanation
Indices: 72479638--72479792 Score: 226
Period size: 54 Copynumber: 2.9 Consensus size: 55
72479628 TACTGAAATG
* *
72479638 CCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTACT-GTTTTA
1 CCCTCGATTTATAGAATTACTATTTTACCATCGATTTACAAAATTACTCGTTTTA
* * *
72479692 CCCTCGATTTCTAGAATTACTATTTTACCATCGATTTATAGAATTA-TCGTTTTA
1 CCCTCGATTTATAGAATTACTATTTTACCATCGATTTACAAAATTACTCGTTTTA
*
72479746 CCCTCGATTTACAGAATTA-TCATTTTACCATCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTACT-ATTTTACCATCGATTTACAAAATTAC
72479793 CAAAATACCC
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
53 2 0.02
54 87 0.98
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (55 bp):
CCCTCGATTTATAGAATTACTATTTTACCATCGATTTACAAAATTACTCGTTTTA
Found at i:72479791 original size:81 final size:81
Alignment explanation
Indices: 72479641--72479792 Score: 202
Period size: 81 Copynumber: 1.9 Consensus size: 81
72479631 TGAAATGCCC
* * *
72479641 TCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTCTAG
1 TCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTACTATTTTACCATCGATTTCTAA
72479706 AATTACTATTTTACCA
66 AATTACTATTTTACCA
* * *
72479722 TCGATTTATAGAATTA-TCGTTTTACCCTCGATTTACAGAATTA-TCATTTTACCATCGATTTAC
1 TCGATTTATAGAATTACT-ATTTTACCCTCAATTTACAAAATTACT-ATTTTACCATCGATTT-C
72479785 -AAAATTAC
63 TAAAATTAC
72479793 CAAAATACCC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
80 2 0.03
81 59 0.95
82 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (81 bp):
TCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTACTATTTTACCATCGATTTCTAA
AATTACTATTTTACCA
Found at i:72479801 original size:27 final size:26
Alignment explanation
Indices: 72479747--72479872 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 26
72479737 ATCGTTTTAC
* * ***
72479747 CCTCGATTTACAGAATTATCATTTTA
1 CCTCGATTTACAAAATTACCAAAATA
72479773 CCATCGATTTACAAAATTACCAAAATA
1 CC-TCGATTTACAAAATTACCAAAATA
*
72479800 CCCTCGA-TTAGGAAAATTACCAAAATA
1 -CCTCGATTTA-CAAAATTACCAAAATA
* * **
72479827 CCCCTGGTTTGTAAAATTACCAAAATA
1 CCTC-GATTTACAAAATTACCAAAATA
*
72479854 CCCCTGATTTACAAAATTA
1 CCTC-GATTTACAAAATTA
72479873 TAGAAATACC
Statistics
Matches: 82, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
26 8 0.10
27 70 0.85
28 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (26 bp):
CCTCGATTTACAAAATTACCAAAATA
Found at i:72479802 original size:54 final size:54
Alignment explanation
Indices: 72479625--72479808 Score: 192
Period size: 54 Copynumber: 3.4 Consensus size: 54
72479615 TTAGTTTACC
* * * * *
72479625 AATTACTGAAATGCCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAA
1 AATTACCGAAATACCCTCGATTTACAGAATTACTATTTTACCATCGATTTACAA
* *** * *
72479679 AATTACTGTTTTACCCTCGATTT-CTAGAATTACTATTTTACCATCGATTTATAG
1 AATTACCGAAATACCCTCGATTTAC-AGAATTACTATTTTACCATCGATTTACAA
* ***
72479733 AATTATCGTTTTACCCTCGATTTACAGAATTA-TCATTTTACCATCGATTTACAA
1 AATTACCGAAATACCCTCGATTTACAGAATTACT-ATTTTACCATCGATTTACAA
*
72479787 AATTACCAAAATACCCTCGATT
1 AATTACCGAAATACCCTCGATT
72479809 AGGAAAATTA
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 107 0.98
55 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.39
Consensus pattern (54 bp):
AATTACCGAAATACCCTCGATTTACAGAATTACTATTTTACCATCGATTTACAA
Found at i:72479807 original size:81 final size:81
Alignment explanation
Indices: 72479633--72479808 Score: 196
Period size: 81 Copynumber: 2.2 Consensus size: 81
72479623 CCAATTACTG
* * *
72479633 AAATGCCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTACTATTTTACCATCG
* *
72479698 ATTTCTAGAATTACTA
66 ATTTCTAAAATTACCA
*** * * * *
72479714 TTTTACCATCGATTTATAGAATTA-TCGTTTTACCCTCGATTTACAGAATTA-TCATTTTACCAT
1 AAATACCCTCGATTTATAGAATTACT-ATTTTACCCTCAATTTACAAAATTACT-ATTTTACCAT
72479777 CGATTTAC-AAAATTACCA
64 CGATTT-CTAAAATTACCA
72479795 AAATACCCTCGATT
1 AAATACCCTCGATT
72479809 AGGAAAATTA
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
80 2 0.03
81 73 0.96
82 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (81 bp):
AAATACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAAAATTACTATTTTACCATCG
ATTTCTAAAATTACCA
Found at i:72479943 original size:27 final size:27
Alignment explanation
Indices: 72479780--72479969 Score: 127
Period size: 27 Copynumber: 7.0 Consensus size: 27
72479770 TTACCATCGA
*
72479780 TTTACAAAATTACCAAAATACCC-TCG
1 TTTACAAAATTACCAAAATACCCTTGG
* * *
72479806 ATTAGGAAAATTACCAAAATACCCCTGG
1 TTTA-CAAAATTACCAAAATACCCTTGG
** * *
72479834 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACCAAAATACCCTTGG
* *
72479861 TTTACAAAATTA-TAGAAATACCCTTGAC
1 TTTACAAAATTACCA-AAATACCCTTG-G
* *
72479889 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACCA-AAATACCCTTGG
**
72479917 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** * * *
72479944 TTTGTAGATTTACCAAAACACCCTTG
1 TTTACAAAATTACCAAAATACCCTTG
72479970 TAGGATGAAA
Statistics
Matches: 133, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
26 4 0.03
27 97 0.73
28 11 0.08
29 21 0.16
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGG
Found at i:72480047 original size:27 final size:27
Alignment explanation
Indices: 72480000--72480063 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
72479990 ACCCCTAATA
72480000 GGTAAAA-GACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
72480026 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
72480053 GGTAAAATGAC
1 GGTAAAATGAC
72480064 AAATATGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:72480907 original size:25 final size:25
Alignment explanation
Indices: 72480879--72480965 Score: 131
Period size: 25 Copynumber: 3.5 Consensus size: 25
72480869 AGGAAGTGCT
72480879 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
*
72480904 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
72480929 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
72480954 AAAAGGGCTTTG
1 AAAAGGGCTTTG
72480966 TCCAAGTTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
25 55 0.96
26 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:72480980 original size:24 final size:25
Alignment explanation
Indices: 72480879--72480980 Score: 109
Period size: 25 Copynumber: 4.1 Consensus size: 25
72480869 AGGAAGTGCT
***
72480879 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTATTA
* *
72480904 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTATTA
*
72480929 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATTA
* *
72480954 AAAAGGGCTTTGTCCAAG-TTATTA
1 AAAAGGGCTTTGCCCCAGTTTATTA
72480978 AAA
1 AAA
72480981 GAGGCTAGGC
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.12
25 59 0.86
26 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTA
Found at i:72480997 original size:50 final size:50
Alignment explanation
Indices: 72480879--72480998 Score: 127
Period size: 50 Copynumber: 2.4 Consensus size: 50
72480869 AGGAAGTGCT
* * * *
72480879 AAAAGGGTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCAAGTTTACTG
** * * *
72480929 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGTCCAAG-TTA-TT
1 AAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCAAGTTTACTG
72480977 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTAGGCC-CCAGTT
72480999 ATATGATAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
48 6 0.10
49 10 0.17
50 43 0.73
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCAAGTTTACTG
Found at i:72481242 original size:31 final size:31
Alignment explanation
Indices: 72481193--72481270 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
72481183 CGCTTACAGT
72481193 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72481223 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72481254 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
72481271 CTCTGACGAG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 11 0.23
31 36 0.77
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:72494316 original size:42 final size:42
Alignment explanation
Indices: 72494246--72494379 Score: 162
Period size: 42 Copynumber: 3.2 Consensus size: 42
72494236 AAGAAAAGCA
*
72494246 TTCATTGCATTTAGAGG-CCTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAAGG-GTGGAGGTCCATTTACTT
* *
72494288 TTCATTGCATTTAGGGGCCCAAGGGTGGAGGGCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAAGGGTGGAGGTCCATTTACTT
* ** * * *
72494330 TTCATTACATTTAGAGGCCCAATCGTAGAAGTCTATTTACTTT
1 TTCATTGCATTTAGAGGCCCAAGGGTGGAGGTCCATTTAC-TT
72494373 TTCATTG
1 TTCATTG
72494380 TATATGAAGG
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
42 65 0.83
43 13 0.17
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAAGGGTGGAGGTCCATTTACTT
Found at i:72495353 original size:22 final size:20
Alignment explanation
Indices: 72495303--72495353 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
72495293 AAAAGTTTTG
72495303 ATTT-TTTTTT-AAAAGAAA
1 ATTTATTTTTTAAAAAGAAA
*
72495321 GTTTATATTTTTAAAAAGAAAA
1 ATTTAT-TTTTTAAAAAG-AAA
72495343 ATTTGATTTTT
1 ATTT-ATTTTT
72495354 AGTTAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 3 0.12
19 1 0.04
20 5 0.19
21 5 0.19
22 10 0.38
23 2 0.08
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTTATTTTTTAAAAAGAAA
Found at i:72495572 original size:32 final size:29
Alignment explanation
Indices: 72495522--72495585 Score: 83
Period size: 32 Copynumber: 2.1 Consensus size: 29
72495512 TAAAGGAAAA
* *
72495522 TTTTTAATTTTTAAAATAAAGTTTTGATCT
1 TTTTTAATTTTCAAAATAAAGGTTTGAT-T
72495552 TTTTTAACTATTTCAAAATAAAGGTTTGATT
1 TTTTTAA-T-TTTCAAAATAAAGGTTTGATT
72495583 TTT
1 TTT
72495586 AACAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 7 0.23
31 5 0.17
32 18 0.60
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.55
Consensus pattern (29 bp):
TTTTTAATTTTCAAAATAAAGGTTTGATT
Found at i:72496153 original size:11 final size:10
Alignment explanation
Indices: 72496123--72496158 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
72496113 CACTTGTATA
72496123 ATTTTTATTT
1 ATTTTTATTT
*
72496133 ATTCTTATTT
1 ATTTTTATTT
72496143 ATTGTTTATTT
1 ATT-TTTATTT
72496154 ATTTT
1 ATTTT
72496159 CATGCCTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:72503436 original size:24 final size:25
Alignment explanation
Indices: 72503404--72503451 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
72503394 GGATGCTACG
*
72503404 AAGAGCTAT-TAATGAGAAGCTCGC
1 AAGAACTATATAATGAGAAGCTCGC
*
72503428 AAGAACTATATAATGGGAAGCTCG
1 AAGAACTATATAATGAGAAGCTCG
72503452 AGAGGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.21
Consensus pattern (25 bp):
AAGAACTATATAATGAGAAGCTCGC
Found at i:72506785 original size:40 final size:40
Alignment explanation
Indices: 72506718--72506894 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
72506708 ACCCAAGTAT
* **
72506718 CTTCGGGAT-TTAG-CCGGATATAACAACTCGTGCAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
72506757 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
72506797 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
72506837 CTTCGGGACATAGACCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
72506877 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
72506895 TTATCATCCG
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 101 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:72509902 original size:27 final size:27
Alignment explanation
Indices: 72509871--72510048 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72509861 TAAATTGTAC
72509871 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72509898 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72509924 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72509952 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72509980 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72510007 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72510034 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72510049 GACTCATATG
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72509985 original size:82 final size:81
Alignment explanation
Indices: 72509872--72510027 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72509862 AAATTGTACA
* *
72509872 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72509936 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72509953 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72510018 TGCGAGTTGA
65 TGCGAATTGA
72510028 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72510039 original size:82 final size:81
Alignment explanation
Indices: 72509868--72510048 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72509858 GATTAAATTG
* *
72509868 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72509933 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72509949 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72510013 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72510031 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72510049 GACTCATATG
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72517965 original size:27 final size:27
Alignment explanation
Indices: 72517934--72518111 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
72517924 TAAATTGTAC
72517934 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
72517961 TGCACTAAGTGTGCGAAATGA--ATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72517986 GATGCACTAAGTGTGCGAATTGACCATGC
1 -A-GCACTAAGTGTGCGATTTGACTATGT
*
72518015 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72518043 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72518070 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72518097 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72518112 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.03
27 99 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72518075 original size:82 final size:81
Alignment explanation
Indices: 72517935--72518090 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
72517925 AAATTGTACA
* *
72517935 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
72518000 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
**
72518016 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCACTAAG
*
72518079 TGTGCGAGTTGA
63 TGTGCGAATTGA
72518091 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 15 0.22
82 48 0.72
83 1 0.01
84 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72518102 original size:82 final size:81
Alignment explanation
Indices: 72517931--72518111 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
72517921 GATTAAATTG
* *
72517931 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
72517996 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * **
72518012 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCAC
* **
72518075 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
72518094 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72518112 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 17 0.20
82 63 0.75
83 1 0.01
84 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72521376 original size:46 final size:46
Alignment explanation
Indices: 72521323--72521417 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
72521313 TTTTAGCTGT
*
72521323 CTAGATGCATAAGCTGTTACTTTACCTTCTTGCATCAATACACAAC
1 CTAGATGCATAAGCTATTACTTTACCTTCTTGCATCAATACACAAC
*
72521369 CTAGATGCATAAGCTATTACTTTACCTTCTTGCGTCAATACACAAC
1 CTAGATGCATAAGCTATTACTTTACCTTCTTGCATCAATACACAAC
72521415 CTA
1 CTA
72521418 AAACATTCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.33
Consensus pattern (46 bp):
CTAGATGCATAAGCTATTACTTTACCTTCTTGCATCAATACACAAC
Found at i:72528985 original size:38 final size:38
Alignment explanation
Indices: 72528937--72529136 Score: 355
Period size: 38 Copynumber: 5.3 Consensus size: 38
72528927 GGCTCAAAGG
* * *
72528937 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
72528975 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
72529013 CCCGGATATATTACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
72529051 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
72529089 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
72529127 CCCGGATATA
1 CCCGGATATA
72529137 CATCAAATAT
Statistics
Matches: 155, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 155 1.00
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:72535120 original size:46 final size:46
Alignment explanation
Indices: 72535068--72535295 Score: 316
Period size: 46 Copynumber: 5.0 Consensus size: 46
72535058 GCTTTCTGAA
* *
72535068 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
72535114 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
72535160 ATAAAATGAATAAAACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
72535206 GA-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 -ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
72535252 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
72535296 TCAAAGATAA
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 2 0.01
46 163 0.98
47 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:72536943 original size:43 final size:42
Alignment explanation
Indices: 72536895--72537014 Score: 118
Period size: 42 Copynumber: 2.8 Consensus size: 42
72536885 CTTATGTAAG
* * * *
72536895 ATCTCATTTCGATGCCAATAGCCTAGT-TATGGTCTCACATGAA
1 ATCTCATATCAATGCC-ATAGCCCA-TATATGGTCTCACACGAA
* *
72536938 ATCTCATATCAATGCCATATCCCATATATGGTCTTACACGAA
1 ATCTCATATCAATGCCATAGCCCATATATGGTCTCACACGAA
* * *
72536980 ATCTCATAAT-GATGCCATATCCCAGATATGGTCTC
1 ATCTCAT-ATCAATGCCATAGCCCATATATGGTCTC
72537015 CGTAATCCTA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
41 1 0.02
42 49 0.74
43 16 0.24
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (42 bp):
ATCTCATATCAATGCCATAGCCCATATATGGTCTCACACGAA
Found at i:72536981 original size:42 final size:42
Alignment explanation
Indices: 72536922--72537014 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
72536912 ATAGCCTAGT
* *
72536922 TATGGTCTCACATGAAATCTCAT-ATCAATGCCATATCCCATA
1 TATGGTCTCACACGAAATCTCATAAT-AATGCCATATCCCAGA
* *
72536964 TATGGTCTTACACGAAATCTCATAATGATGCCATATCCCAGA
1 TATGGTCTCACACGAAATCTCATAATAATGCCATATCCCAGA
72537006 TATGGTCTC
1 TATGGTCTC
72537015 CGTAATCCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
42 43 0.96
43 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (42 bp):
TATGGTCTCACACGAAATCTCATAATAATGCCATATCCCAGA
Found at i:72543909 original size:42 final size:42
Alignment explanation
Indices: 72543861--72543958 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
72543851 ATAGCCCAAC
* * * *
72543861 TATGGTCTCACACAAAATCTCATATTGATGCCATATCCCATA
1 TATGGTCTTACACAAAATCTCACAATGATGCCATATCCCAGA
* *
72543903 TATGGTCTTACACGAAATCTCACAATGATTCCATATCCCAGA
1 TATGGTCTTACACAAAATCTCACAATGATGCCATATCCCAGA
72543945 TATGGTCTTACACA
1 TATGGTCTTACACA
72543959 TAGTCTCGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.31
Consensus pattern (42 bp):
TATGGTCTTACACAAAATCTCACAATGATGCCATATCCCAGA
Found at i:72545309 original size:14 final size:14
Alignment explanation
Indices: 72545270--72545319 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
72545260 TAATAAATTT
*
72545270 ATTATTTAACATAA
1 ATTATTTAATATAA
72545284 ATATAAATTTAATATAA
1 AT-T--ATTTAATATAA
*
72545301 ATTATTTAATATGA
1 ATTATTTAATATAA
72545315 ATTAT
1 ATTAT
72545320 AATTAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 17 0.55
15 1 0.03
16 1 0.03
17 12 0.39
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
ATTATTTAATATAA
Found at i:72545768 original size:3 final size:3
Alignment explanation
Indices: 72545760--72545800 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
72545750 AATTCTTTCA
72545760 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
72545801 AATTTATGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:72545951 original size:20 final size:22
Alignment explanation
Indices: 72545926--72545966 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
72545916 TATATTTTTA
72545926 TTTCT-ATAAA-ATTTTGAAAT
1 TTTCTAATAAATATTTTGAAAT
72545946 TTTCTAATAAATATTTTGAAA
1 TTTCTAATAAATATTTTGAAA
72545967 ATTTGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 9 0.47
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (22 bp):
TTTCTAATAAATATTTTGAAAT
Found at i:72546067 original size:17 final size:16
Alignment explanation
Indices: 72546047--72546085 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
72546037 AATTTAAAAT
72546047 ATATTTAAATTAATTTA
1 ATATTTAAATT-ATTTA
*
72546064 ATATTCAAATTATTTA
1 ATATTTAAATTATTTA
72546080 A-ATTTA
1 ATATTTA
72546086 TTAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 4 0.20
16 6 0.30
17 10 0.50
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTTAAATTATTTA
Found at i:72547518 original size:60 final size:60
Alignment explanation
Indices: 72547424--72547553 Score: 145
Period size: 60 Copynumber: 2.2 Consensus size: 60
72547414 TAAGTTCTGC
* * * ** * * *
72547424 TATTTCCAAAATCTGATGCACCAAGCATATTATCATATGTGTAATGCCATTTTAGCCTAT
1 TATTTCCACAATCTGATGCACCAAACATACTATCATATACGTAATGCCATGTCAACCTAT
* * *
72547484 TATTTCCACAAT-TGGATGCGCCAAACATACTATCATATACGTAATGTCATGTCAACTTAT
1 TATTTCCACAATCT-GATGCACCAAACATACTATCATATACGTAATGCCATGTCAACCTAT
72547544 TATTTCCACA
1 TATTTCCACA
72547554 TATTACTTAC
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 1 0.02
60 57 0.98
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (60 bp):
TATTTCCACAATCTGATGCACCAAACATACTATCATATACGTAATGCCATGTCAACCTAT
Found at i:72548172 original size:20 final size:19
Alignment explanation
Indices: 72548122--72548170 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
72548112 AATAAGTGAT
* * *
72548122 GAAATTAATATTTTTTATG
1 GAAATTAAAATTTTTGACG
*
72548141 GAAATTTCAAATTTTTGACG
1 GAAA-TTAAAATTTTTGACG
72548161 GAAATTAAAA
1 GAAATTAAAA
72548171 ATCTTATCAC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (19 bp):
GAAATTAAAATTTTTGACG
Found at i:72552385 original size:32 final size:32
Alignment explanation
Indices: 72552340--72552402 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
72552330 TTAAACTTAA
*
72552340 ATCACTTTAATATTAAATT-AATATAATATTT
1 ATCAATTTAATATTAAATTAAATATAATATTT
* *
72552371 ATCAATTTAAATATTAGATTAAATTTAATATT
1 ATCAATTT-AATATTAAATTAAATATAATATT
72552403 AAATCTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 7 0.26
32 10 0.37
33 10 0.37
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (32 bp):
ATCAATTTAATATTAAATTAAATATAATATTT
Found at i:72554060 original size:21 final size:21
Alignment explanation
Indices: 72554026--72554069 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
72554016 AAATCTCTAC
*
72554026 AATTTCTCCCTAAAGCTCTCA
1 AATTTCTCACTAAAGCTCTCA
* **
72554047 AATTTCTCATTAAATTTCTCA
1 AATTTCTCACTAAAGCTCTCA
72554068 AA
1 AA
72554070 GCTCTTCATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCTCACTAAAGCTCTCA
Found at i:72555280 original size:14 final size:14
Alignment explanation
Indices: 72555261--72555291 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
72555251 AGTCGTTTCA
*
72555261 TATTTAGTATTTTG
1 TATTTAGTATTATG
72555275 TATTTAGTATTATG
1 TATTTAGTATTATG
72555289 TAT
1 TAT
72555292 ATAACTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (14 bp):
TATTTAGTATTATG
Found at i:72555813 original size:30 final size:30
Alignment explanation
Indices: 72555777--72555835 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
72555767 TGACGGCACG
**
72555777 GGCCCATCAACAGTGCCCACACAATCACCT
1 GGCCCATCAACAACGCCCACACAATCACCT
*
72555807 GGCCCATCAACAACGTCCACACAATCACC
1 GGCCCATCAACAACGCCCACACAATCACC
72555836 GAGCTCAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.44, G:0.12, T:0.12
Consensus pattern (30 bp):
GGCCCATCAACAACGCCCACACAATCACCT
Found at i:72558343 original size:47 final size:46
Alignment explanation
Indices: 72558274--72558543 Score: 196
Period size: 47 Copynumber: 5.7 Consensus size: 46
72558264 TTTGTGCGCT
**
72558274 AGTGTAAGACATGTCTAAGACAT-GCATCGGCCACATTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG-CACATTATGAAAGCC
* *
72558320 AGTGTAAGACCATGTTTGGGACATGGCATCGG--CATTGA-GACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCACATT-ATGA--A-AGCC
* * * * *
72558368 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCAATATGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCG-GCACATTATGAAAGCC
* * * *
72558414 AGTGTAAGATATGTCTGGGACATGGCATTGGCACGGATATGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCAC--AT-TATGAAAGCC
* * * *
72558463 AGTGTAAGACCATGTTTGGGATATGGTATC-G-AC-TTGATAGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCACATT-AT-GA-AAGCC
72558510 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
72558544 TTATACCCTA
Statistics
Matches: 178, Mismatches: 26, Indels: 37
0.74 0.11 0.15
Matches are distributed among these distances:
44 1 0.01
45 8 0.04
46 46 0.26
47 63 0.35
48 24 0.13
49 21 0.12
50 15 0.08
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCACATTATGAAAGCC
Found at i:72566290 original size:24 final size:25
Alignment explanation
Indices: 72566253--72566300 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
72566243 AATAAGTAAA
72566253 TACATACATGTATTACAAATGTATG
1 TACATACATGTATTACAAATGTATG
* *
72566278 TACA-ACATTTATTACACATGTAT
1 TACATACATGTATTACAAATGTAT
72566301 TTTATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (25 bp):
TACATACATGTATTACAAATGTATG
Found at i:72569808 original size:125 final size:125
Alignment explanation
Indices: 72569508--72569800 Score: 469
Period size: 125 Copynumber: 2.3 Consensus size: 125
72569498 GGCTAAGCAT
* *
72569508 GAACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
* *
72569573 CTGTTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTTAAAATTATTTTTTAG
66 CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACATCTTCTCAAAATTATTTTTTAG
* * * *
72569633 GAACTACTGTAGCAAAAAAACGTCCATGTGGGAGCTTTTTTCAGAAATTTTGATGATATTGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
*
72569698 CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACGTCTTCTCAAAATTATTTTTTTAG
66 CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACATCTTCTCAAAATTA-TTTTTTAG
* * *
72569759 GAACTACTGTAGCAAAAGAGCATCCACGTAGTAGCTTTTTTC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTC
72569801 TGTATTTTTG
Statistics
Matches: 152, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
125 108 0.71
126 44 0.29
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (125 bp):
GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGAAATTTTGATGACATTGCATC
CTGTTTGAAGCGTTTTTGACACTATTTATTTAGAAACATCTTCTCAAAATTATTTTTTAG
Found at i:72569889 original size:94 final size:95
Alignment explanation
Indices: 72569710--72569904 Score: 320
Period size: 94 Copynumber: 2.1 Consensus size: 95
72569700 GTTTGAAGCG
* * *
72569710 TTTTTGACACTATTTATTTAGAAACGTCTTCTCAAAATTATTTTTTTAGGAACTACTGTAGCAAA
1 TTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTAATGTAGCAAA
*
72569775 AGAGCATCCACGTAGTAGCTTTTTTCTGTA
66 AGAGCATCCACGTAGTAGCTTTTTTCTATA
*
72569805 TTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAGGAACTAATGTAGCAAA
1 TTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTAATGTAGCAAA
* *
72569869 AGATCATCCACGTGGTAGCTTTTTTCTATA
66 AGAGCATCCACGTAGTAGCTTTTTTCTATA
72569899 TTTTTG
1 TTTTTG
72569905 TTGACAGTGT
Statistics
Matches: 93, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
94 55 0.59
95 38 0.41
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.42
Consensus pattern (95 bp):
TTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAGGAACTAATGTAGCAAA
AGAGCATCCACGTAGTAGCTTTTTTCTATA
Found at i:72570096 original size:30 final size:29
Alignment explanation
Indices: 72570021--72570246 Score: 83
Period size: 30 Copynumber: 7.6 Consensus size: 29
72570011 TAACACAATA
**
72570021 CCTAATTTAATTAAT-TTTAACCCAAAAC
1 CCTAATTTAATTAATCTAAAACCCAAAAC
* * *
72570049 CCTAATGTAATTTATCTAAAACCCTAGAAC
1 CCTAATTTAATTAATCTAAAACCC-AAAAC
* **
72570079 CCTAATTTACTTAATCTATTTAAAAATCATAAAC
1 CCTAATTTAATTAATC----TAAAACCCA-AAAC
**
72570113 CCTAATTTAATT-AT-T------TTAAAC
1 CCTAATTTAATTAATCTAAAACCCAAAAC
* * *
72570134 CCTAATTTAATTTATCTAAAACCTTAGAAC
1 CCTAATTTAATTAATCTAAAACC-CAAAAC
* *
72570164 CCTAATTTACTTAATTTTAACCCAAAACCCAAAAC
1 CCTAA--T--TTAA--TTAATCTAAAACCCAAAAC
* * **
72570199 CTTAATTTAATTTATCTAAAACCCTGGAAC
1 CCTAATTTAATTAATCTAAAACCC-AAAAC
*
72570229 CCTAATTTACTTAATCTA
1 CCTAATTTAATTAATCTA
72570247 TTCAAAAACC
Statistics
Matches: 145, Mismatches: 30, Indels: 44
0.66 0.14 0.20
Matches are distributed among these distances:
21 16 0.11
22 2 0.01
23 1 0.01
28 14 0.10
29 17 0.12
30 44 0.30
31 4 0.03
32 1 0.01
33 4 0.03
34 24 0.17
35 8 0.06
36 10 0.07
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.36
Consensus pattern (29 bp):
CCTAATTTAATTAATCTAAAACCCAAAAC
Found at i:72570122 original size:21 final size:21
Alignment explanation
Indices: 72570096--72570143 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
72570086 TACTTAATCT
72570096 ATTTAAAAATCATAAACCCTA
1 ATTTAAAAATCATAAACCCTA
** **
72570117 ATTTAATTATTTTAAACCCTA
1 ATTTAAAAATCATAAACCCTA
72570138 ATTTAA
1 ATTTAA
72570144 TTTATCTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTTAAAAATCATAAACCCTA
Found at i:72570155 original size:22 final size:21
Alignment explanation
Indices: 72570109--72570156 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
72570099 TAAAAATCAT
* *
72570109 AAACCCTAATTTAATTATTTT
1 AAACCCTAATTTAATTATCTA
72570130 AAACCCTAATTTAATTTATCTA
1 AAACCCTAATTTAA-TTATCTA
72570152 AAACC
1 AAACC
72570157 TTAGAACCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (21 bp):
AAACCCTAATTTAATTATCTA
Found at i:72570223 original size:150 final size:151
Alignment explanation
Indices: 72570039--72570329 Score: 494
Period size: 150 Copynumber: 1.9 Consensus size: 151
72570029 AATTAATTTT
*
72570039 AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAA
1 AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
* *
72570104 ATCATAAACCCTAATTTAA-TTATTTTAAACCCTAATTTAATTTATCTAAAACCTTAGAACCCTA
66 ACCATAAACCCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
72570168 ATTTACTTAATTTTAACCCAA
131 ATTTACTTAATTTTAACCCAA
* * *
72570189 AACCCAAAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATTTACTTAATCTATTCAAAA
1 AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
* * *
72570254 ACCATAAACTCTAGTTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTA
66 ACCATAAACCCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
72570319 ATTTACTTAAT
131 ATTTACTTAAT
72570330 CTATTTAAAA
Statistics
Matches: 131, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
150 77 0.59
151 54 0.41
ACGTcount: A:0.41, C:0.21, G:0.02, T:0.36
Consensus pattern (151 bp):
AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
ACCATAAACCCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
ATTTACTTAATTTTAACCCAA
Found at i:72570283 original size:22 final size:22
Alignment explanation
Indices: 72570258--72570482 Score: 92
Period size: 22 Copynumber: 10.4 Consensus size: 22
72570248 TCAAAAACCA
* *
72570258 TAAACTCTAGTTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
*
72570280 TAAACCCTAATTTAATTTATCT
1 TAAACCCTAATTTAATTTATTT
* * *
72570302 AAAACCCTAGAACTCTAATTTA-CT
1 TAAACCCT--AA-TTTAATTTATTT
* ** ***
72570326 T-AA-TCT-ATTTAA-AAACCA
1 TAAACCCTAATTTAATTTATTT
*
72570344 TAAACTCTAATTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
*
72570366 TAAACCCTAATTTAATTTATCT
1 TAAACCCTAATTTAATTTATTT
* ** *
72570388 AAAACCCTAGAACCCTAATTTA-CT
1 TAAACCCT--AA-TTTAATTTATTT
* ** **
72570412 T-AA-TCT-ATTTAA-AAATCA
1 TAAACCCTAATTTAATTTATTT
*
72570430 TAAACTCTAATTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
*
72570452 TAAACCCTAATTTAATTTATCT
1 TAAACCCTAATTTAATTTATTT
*
72570474 AAAACCCTA
1 TAAACCCTA
72570483 GAACCCTAAT
Statistics
Matches: 152, Mismatches: 35, Indels: 32
0.69 0.16 0.15
Matches are distributed among these distances:
17 2 0.01
18 11 0.07
19 6 0.04
20 6 0.04
21 12 0.08
22 88 0.58
23 4 0.03
24 8 0.05
25 15 0.10
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.41
Consensus pattern (22 bp):
TAAACCCTAATTTAATTTATTT
Found at i:72570286 original size:64 final size:65
Alignment explanation
Indices: 72570129--72570288 Score: 191
Period size: 65 Copynumber: 2.5 Consensus size: 65
72570119 TTAATTATTT
* * *
72570129 TAAACCCTAATTTAATTTATCTAAAACCTTAGAACCCTAATTTACTTAATTTTAACCCAAAACCC
1 TAAA-CCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTCTAACCCAAAAACC
72570194 A
65 A
* **
72570195 -AAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATTTACTTAA-TCT-ATTCAAAAACC
1 TAAACC-TAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTCTAACCCAAAAACC
72570257 A
65 A
* * *
72570258 TAAACTCTAGTTTAATTTATTTTAAACCCTA
1 TAAAC-CTAATTTAATTTATCTAAAACCCTA
72570289 ATTTAATTTA
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
63 9 0.11
64 28 0.35
65 44 0.54
ACGTcount: A:0.40, C:0.22, G:0.03, T:0.36
Consensus pattern (65 bp):
TAAACCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTCTAACCCAAAAACCA
Found at i:72570286 original size:172 final size:169
Alignment explanation
Indices: 72570108--72570528 Score: 456
Period size: 172 Copynumber: 2.4 Consensus size: 169
72570098 TTAAAAATCA
* * * * *
72570108 TAAACCCTAATTTAA-TTATTTTAAACCCTAA-TTTAATTTATCTAAAAC-CTT-AGAACCCTAA
1 TAAACCCTAATTTAATTTATCTAAAACCCTAACTCTAATTTA-CTAAAACACTTAAAAACCATAA
* *
72570169 TTTACT-TAATTTTAACCCAAAACCCAAAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTA
65 ---ACTCTAA-TTTAA---AAAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
*
72570233 ATTTACTTAATCTATTCAAAAACCATAAACTCTAGTTTAATTTATTT
123 ATTTACTTAATCTATTCAAAAACCATAAACTCTAATTTAATTTATTT
* * *
72570280 TAAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTAATTTACTTAATCTATTTAAAAACCAT
1 TAAACCCTAATTTAATTTATCTAAAACCCT--AACTCTAATTTACTAAAAC-ACTTAAAAACCAT
*** ****
72570345 AAACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
63 AAACTCTAATTTAAAAAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
* *
72570410 CTTAATCTATTTAAAAATCATAAACTCTAATTTAATTTATTT
128 CTTAATCTATTCAAAAACCATAAACTCTAATTTAATTTATTT
* * * *
72570452 TAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCAT
1 TAAACCCTAATTTAATTTATCTAAAACCCT--AACTCTAATTTACTAAAAC-ACTTAAAAACCAT
*
72570517 AAACCCTAATTT
63 AAACTCTAATTT
72570529 GATTTATTTT
Statistics
Matches: 219, Mismatches: 22, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
172 171 0.78
173 12 0.05
175 15 0.07
176 11 0.05
177 2 0.01
178 8 0.04
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (169 bp):
TAAACCCTAATTTAATTTATCTAAAACCCTAACTCTAATTTACTAAAACACTTAAAAACCATAAA
CTCTAATTTAAAAAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTT
AATCTATTCAAAAACCATAAACTCTAATTTAATTTATTT
Found at i:72570320 original size:30 final size:29
Alignment explanation
Indices: 72570280--72570763 Score: 137
Period size: 30 Copynumber: 16.7 Consensus size: 29
72570270 TAATTTATTT
72570280 TAAACCCTAATTTAATTTATCTAAAACCC
1 TAAACCCTAATTTAATTTATCTAAAACCC
* * * *
72570309 TAGAACTCTAATTTACTTAATCTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATCT-AAAACCC
* *
72570344 TAAACTCTAATTTAATTTAT-T------T
1 TAAACCCTAATTTAATTTATCTAAAACCC
72570366 TAAACCCTAATTTAATTTATCTAAAACCC
1 TAAACCCTAATTTAATTTATCTAAAACCC
* * * *
72570395 TAGAACCCTAATTTACTTAATCTATTTAAAAATCA
1 TA-AACCCTAA--T--TTAATTTATCT-AAAACCC
* *
72570430 TAAACTCTAATTTAATTTAT-T------T
1 TAAACCCTAATTTAATTTATCTAAAACCC
72570452 TAAACCCTAATTTAATTTATCTAAAACCC
1 TAAACCCTAATTTAATTTATCTAAAACCC
* * *
72570481 TAGAACCCTAATTTACTTAATCTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATCT-AAAACCC
* *
72570516 TAAACCCTAATTTGATTTAT-T------T
1 TAAACCCTAATTTAATTTATCTAAAACCC
* * * *
72570538 TAAACTCTGATTTGATTTATCTAAAA-TC
1 TAAACCCTAATTTAATTTATCTAAAACCC
* ** *
72570566 TAAAACCCTAATTTAATTAAT-TTTAACCA
1 T-AAACCCTAATTTAATTTATCTAAAACCC
* * *
72570595 AAAACCCAAATTTAATTTATCTAAAACTC
1 TAAACCCTAATTTAATTTATCTAAAACCC
* * * * *
72570624 TAAAACCCGAATTTACTTAACTATTTAAAAATCA
1 T-AAACCCTAATTTAATT---TATCT-AAAACCC
* * *
72570658 TAAACCATAATTTATTTTAT-T------T
1 TAAACCCTAATTTAATTTATCTAAAACCC
72570680 TAAACCCTAATTTAATTTATCTAAAACCC
1 TAAACCCTAATTTAATTTATCTAAAACCC
* *
72570709 TAGAACCCTAATTTACTTAATTTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATCT-AAAACCC
*
72570744 TAAATCCTAATTTAATTTAT
1 TAAACCCTAATTTAATTTAT
72570764 TTTAAACTCT
Statistics
Matches: 338, Mismatches: 58, Indels: 117
0.66 0.11 0.23
Matches are distributed among these distances:
22 74 0.22
23 4 0.01
28 21 0.06
29 31 0.09
30 80 0.24
32 8 0.02
33 17 0.05
34 72 0.21
35 31 0.09
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (29 bp):
TAAACCCTAATTTAATTTATCTAAAACCC
Found at i:72570339 original size:34 final size:34
Alignment explanation
Indices: 72570291--72570357 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
72570281 AAACCCTAAT
* *
72570291 TTAATTTATCT-AAAACCCTAGAACTCTAATTTAC
1 TTAATCTATCTAAAAACCATA-AACTCTAATTTAC
*
72570325 TTAATCTATTTAAAAACCATAAACTCTAATTTA
1 TTAATCTATCTAAAAACCATAAACTCTAATTTA
72570358 ATTTATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 21 0.72
35 8 0.28
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.39
Consensus pattern (34 bp):
TTAATCTATCTAAAAACCATAAACTCTAATTTAC
Found at i:72570341 original size:150 final size:148
Alignment explanation
Indices: 72570039--72570374 Score: 480
Period size: 150 Copynumber: 2.2 Consensus size: 148
72570029 AATTAATTTT
* * *
72570039 AACCCAAAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAA
1 AACCCAAAACCTTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
* *
72570104 ATCATAAACCCTAATTTAATTATTTTAAACCCTAATTTAATTTATCTAAAACCTTAGAACCCTAA
66 ACCATAAACCCTAATTTAATTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAA
72570169 TTTACTTAATTTTAACCCAA
131 TTTACTTAATTTTAA--CAA
*
72570189 AACCCAAAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATTTACTTAATCTATTCAAAA
1 AACCCAAAACCTTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
* * *
72570254 ACCATAAACTCTAGTTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTA
66 ACCATAAACCCTAATTTAA-TTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTA
*
72570319 ATTTACTTAATCTATTTA-AA
130 ATTTACTTAAT-T-TTAACAA
* *
72570339 AA-CCATAAA-CTCTAATTTAATTTATTTTAAACCCTA
1 AACCCA-AAACCT-TAATTTAATTTATCTAAAACCCTA
72570375 ATTTAATTTA
Statistics
Matches: 168, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
149 5 0.03
150 105 0.62
151 54 0.32
152 1 0.01
153 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.02, T:0.37
Consensus pattern (148 bp):
AACCCAAAACCTTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTCAAAA
ACCATAAACCCTAATTTAATTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAA
TTTACTTAATTTTAACAA
Found at i:72570348 original size:64 final size:58
Alignment explanation
Indices: 72570280--72570535 Score: 144
Period size: 64 Copynumber: 4.3 Consensus size: 58
72570270 TAATTTATTT
72570280 TAAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTAATTTACTTAATCTATTTAAAAACCA
1 TAAACCCTAATTTAATTTATCTAAAACCCTA-AACTCTAA--T--TTAATCTATTT-AAAACCA
* * * * *
72570344 TAAACTCTAATTTAATTTATTTTAAACCCT-AA-TTTAATTT-ATC----TAAAACCC
1 TAAACCCTAATTTAATTTATCTAAAACCCTAAACTCTAATTTAATCTATTTAAAACCA
* * * * *
72570395 TAGAACCCTAATTTACTTAATCTATTTAAAAATCATAAACTCTAATTTAATTTATTT-------
1 TA-AACCCTAA--T--TTAATTTATCT-AAAACCCTAAACTCTAATTTAATCTATTTAAAACCA
*
72570452 TAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCA
1 TAAACCCTAATTTAATTTATCTAAAACCCTA-AACTCTAA--T--TTAATCTATTT-AAAACCA
*
72570516 TAAACCCTAATTTGATTTAT
1 TAAACCCTAATTTAATTTAT
72570536 TTTAAACTCT
Statistics
Matches: 147, Mismatches: 19, Indels: 52
0.67 0.09 0.24
Matches are distributed among these distances:
51 15 0.10
52 24 0.16
54 3 0.02
56 31 0.21
57 9 0.06
58 2 0.01
59 8 0.05
60 2 0.01
61 4 0.03
62 2 0.01
64 47 0.32
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (58 bp):
TAAACCCTAATTTAATTTATCTAAAACCCTAAACTCTAATTTAATCTATTTAAAACCA
Found at i:72570511 original size:34 final size:34
Alignment explanation
Indices: 72570463--72570528 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
72570453 AAACCCTAAT
* *
72570463 TTAATTTATCT-AAAACCCTAGAACCCTAATTTAC
1 TTAATCTATCTAAAAACCATA-AACCCTAATTTAC
*
72570497 TTAATCTATTTAAAAACCATAAACCCTAATTT
1 TTAATCTATCTAAAAACCATAAACCCTAATTT
72570529 GATTTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.41, C:0.21, G:0.02, T:0.36
Consensus pattern (34 bp):
TTAATCTATCTAAAAACCATAAACCCTAATTTAC
Found at i:72570541 original size:22 final size:22
Alignment explanation
Indices: 72570516--72570557 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
72570506 TTAAAAACCA
72570516 TAAACCCTAATTTGATTTATTT
1 TAAACCCTAATTTGATTTATTT
* *
72570538 TAAACTCTGATTTGATTTAT
1 TAAACCCTAATTTGATTTAT
72570558 CTAAAATCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.50
Consensus pattern (22 bp):
TAAACCCTAATTTGATTTATTT
Found at i:72570600 original size:86 final size:86
Alignment explanation
Indices: 72570195--72570586 Score: 651
Period size: 86 Copynumber: 4.6 Consensus size: 86
72570185 CCAAAACCCA
* * *
72570195 AAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATTTACTTAATCTATTCAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
*
72570260 AACTCTAGTTTAATTTATTTT
66 AACTCTAATTTAATTTATTTT
*
72570281 AAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTAATTTACTTAATCTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
72570346 AACTCTAATTTAATTTATTTT
66 AACTCTAATTTAATTTATTTT
*
72570367 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
72570432 AACTCTAATTTAATTTATTTT
66 AACTCTAATTTAATTTATTTT
72570453 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
* *
72570518 AACCCTAATTTGATTTATTTT
66 AACTCTAATTTAATTTATTTT
* * * * * *
72570539 AAACTCTGATTTGATTTATCTAAAA-TCTAAAACCCTAATTTAATTAAT
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAAT
72570587 TTTAACCAAA
Statistics
Matches: 290, Mismatches: 16, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
85 20 0.07
86 270 0.93
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (86 bp):
AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
AACTCTAATTTAATTTATTTT
Found at i:72570671 original size:228 final size:230
Alignment explanation
Indices: 72570367--72570815 Score: 751
Period size: 228 Copynumber: 2.0 Consensus size: 230
72570357 AATTTATTTT
* * *
72570367 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCGAATTTACTTAATCTATTTAAAAATCATA
72570432 AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
66 AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
* * *
72570497 TTAATCTATTTAAAAACCATAAACCCTAATTTGATTTATTTTAAACTCTGATTTGATTTATCTAA
131 TTAATCTATTTAAAAACCATAAACCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATCTAA
72570562 AA-TCTAAAACCCTAATTTAATTAATTTTAACCAA
196 AACTCTAAAACCCTAATTTAATTAATTTTAACCAA
*
72570596 AAACCCAAATTTAATTTATCTAAAACTCTAAAACCCGAATTTACTTAA-CTATTTAAAAATCATA
1 AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCGAATTTACTTAATCTATTTAAAAATCATA
*
72570660 AAC-CATAATTTATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
66 AACTC-TAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
* * *
72570724 CTTAATTTATTTAAAAACCATAAATCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATTTA
130 CTTAATCTATTTAAAAACCATAAACCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATCTA
* *
72570789 AAACTCTAGAACCCTAATTTACTTAAT
195 AAACTCTAAAACCCTAATTTAATTAAT
72570816 CTATTTAAAA
Statistics
Matches: 205, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
227 1 0.00
228 139 0.68
229 65 0.32
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.40
Consensus pattern (230 bp):
AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCGAATTTACTTAATCTATTTAAAAATCATA
AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
TTAATCTATTTAAAAACCATAAACCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATCTAA
AACTCTAAAACCCTAATTTAATTAATTTTAACCAA
Found at i:72570678 original size:142 final size:144
Alignment explanation
Indices: 72570453--72570731 Score: 420
Period size: 143 Copynumber: 2.0 Consensus size: 144
72570443 AATTTATTTT
* * *
72570453 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
1 AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCGAATTTACTTAATCTATTTAAAAACCATA
* * * * *
72570518 AACCCTAATTTGATTTATTTTAAACTCTGATTTGATTTATCTAAAA-TCTAAAACCCTAATTTAA
66 AACCATAATTTGATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTAA
72570582 TTAATTTTAACCAA
131 TTAATTTTAACCAA
* *
72570596 AAACCCAAATTTAATTTATCTAAAACTCTAAAACCCGAATTTACTTAA-CTATTTAAAAATCATA
1 AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCGAATTTACTTAATCTATTTAAAAACCATA
*
72570660 AACCATAATTT-ATTTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
66 AACCATAATTTGA-TTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTA
*
72570724 CTTAATTT
130 ATTAATTT
72570732 ATTTAAAAAC
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
141 1 0.01
142 55 0.45
143 66 0.54
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.38
Consensus pattern (144 bp):
AAACCCAAATTTAATTTATCTAAAACCCTAAAACCCGAATTTACTTAATCTATTTAAAAACCATA
AACCATAATTTGATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTAA
TTAATTTTAACCAA
Found at i:72570706 original size:22 final size:22
Alignment explanation
Indices: 72570659--72570710 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
72570649 TAAAAATCAT
* * * *
72570659 AAACCATAATTTATTTTATTTT
1 AAACCCTAATTTAATTTATCTA
72570681 AAACCCTAATTTAATTTATCTA
1 AAACCCTAATTTAATTTATCTA
72570703 AAACCCTA
1 AAACCCTA
72570711 GAACCCTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.42
Consensus pattern (22 bp):
AAACCCTAATTTAATTTATCTA
Found at i:72570708 original size:314 final size:320
Alignment explanation
Indices: 72570045--72570844 Score: 1099
Period size: 314 Copynumber: 2.5 Consensus size: 320
72570035 TTTTAACCCA
*
72570045 AAACCCTAATGTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
* *
72570110 AACCCTAATTTAA-TTATTTTAAACCCTAATTTAATTTATCTAAAACCTTAGAACCCTAATTTAC
66 AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
*
72570174 TTAAT-T-TTAACCCAAAACCCA-AAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATT
131 TTAATCTATTTA---AAAA-CCATAAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATT
* * **** *
72570236 TACTTAATCTATTCAAAAACCATAAACTCTAGTTTAATTTATTTTAAACCCTAATTTAATTTATC
192 TACTTAA--TAATCAAAAACCATAAACTCTAGATTAATTTACCAAAAACCCAAATTTAATTTATC
* * *
72570301 TAAAACCCTAGAACTCTAATTTACTTAATCTATTTAAAAACCATAAACTCTAATTTAATTTATTT
255 TAAAACCCTAAAACCCGAATTTACTTAATCTATTTAAAAACCATAAACTCTAATTTAATTTATTT
72570366 T
320 T
72570367 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
72570432 AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
66 AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
* * * * * ** *
72570497 TTAATCTATTTAAAAACCATAAACCCTAATTTGATTTATTTTAAACTCT-G-A-TTTGATTTA-T
131 TTAATCTATTTAAAAACCATAAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATTTACT
* * *
72570558 CTAA-AATCTAAAACCCT-AA-TTTA-ATTAATTTTAACCAAAAACCCAAATTTAATTTATCTAA
196 -TAATAATCAAAAACCATAAACTCTAGATTAA-TTT-ACCAAAAACCCAAATTTAATTTATCTAA
* * *
72570619 AACTCTAAAACCCGAATTTACTTAA-CTATTTAAAAATCATAAAC-CATAATTTATTTTATTTT
258 AACCCTAAAACCCGAATTTACTTAATCTATTTAAAAACCATAAACTC-TAATTTAATTTATTTT
* *
72570681 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
* * *
72570746 AA-TCCTAATTTAATTTATTTTAAACTCTAATTTAATTTATTTAAAACTCTAGAACCCTAATTTA
66 AACT-CTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTA
72570810 CTTAATCTATTTAAAAACCATAAACCTTAATTTAA
130 CTTAATCTATTTAAAAACCATAAACCTTAATTTAA
72570845 ATAATTTTTA
Statistics
Matches: 434, Mismatches: 35, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
313 6 0.01
314 194 0.45
315 46 0.11
316 10 0.02
318 1 0.00
319 9 0.02
320 1 0.00
321 4 0.01
322 104 0.24
323 55 0.13
324 1 0.00
325 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (320 bp):
AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATCTATTTAAAAATCATA
AACTCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTAC
TTAATCTATTTAAAAACCATAAACCTTAATTTAATTTATCTAAAACCCTGGAACCCTAATTTACT
TAATAATCAAAAACCATAAACTCTAGATTAATTTACCAAAAACCCAAATTTAATTTATCTAAAAC
CCTAAAACCCGAATTTACTTAATCTATTTAAAAACCATAAACTCTAATTTAATTTATTTT
Found at i:72570764 original size:30 final size:29
Alignment explanation
Indices: 72570680--72570844 Score: 103
Period size: 34 Copynumber: 5.5 Consensus size: 29
72570670 TATTTTATTT
* *
72570680 TAAACCCTAATTTAATTTATCTAAAACCC
1 TAAACCCTAATTTAATTTATTTAAAACCA
72570709 TAGAACCCTAATTTACTTAATTTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATTT-AAAACCA
*
72570744 TAAATCCTAATTTAATTTATTT-------
1 TAAACCCTAATTTAATTTATTTAAAACCA
*
72570766 TAAACTCTAATTTAATTTATTTAAAACTC-
1 TAAACCCTAATTTAATTTATTTAAAAC-CA
*
72570795 TAGAACCCTAATTTACTTAATCTATTTAAAAACCA
1 TA-AACCCTAA--T--TTAATTTATTT-AAAACCA
*
72570830 TAAACCTTAATTTAA
1 TAAACCCTAATTTAA
72570845 ATAATTTTTA
Statistics
Matches: 108, Mismatches: 8, Indels: 39
0.70 0.05 0.25
Matches are distributed among these distances:
22 20 0.19
29 4 0.04
30 30 0.28
32 4 0.04
34 35 0.32
35 15 0.14
ACGTcount: A:0.42, C:0.17, G:0.01, T:0.40
Consensus pattern (29 bp):
TAAACCCTAATTTAATTTATTTAAAACCA
Found at i:72570775 original size:22 final size:22
Alignment explanation
Indices: 72570750--72570796 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
72570740 ACCATAAATC
*
72570750 CTAATTTAATTTATTTTAAACT
1 CTAATTTAATTTATTTAAAACT
72570772 CTAATTTAATTTATTTAAAACT
1 CTAATTTAATTTATTTAAAACT
72570794 CTA
1 CTA
72570797 GAACCCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (22 bp):
CTAATTTAATTTATTTAAAACT
Found at i:72570852 original size:86 final size:85
Alignment explanation
Indices: 72570596--72570844 Score: 383
Period size: 86 Copynumber: 2.9 Consensus size: 85
72570586 TTTTAACCAA
* * * *
72570596 AAACCCAAATTTAATTTATCTAAAACTCTAAAACCCGAATTTACTTAA-CTATTTAAAAATCATA
1 AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
*
72570660 AACCATAATTTATTTTATTTT
66 AACC-TAATTTAATTTATTTT
* *
72570681 AAACCCTAATTTAATTTATCTAAAACCCTAGAACCCTAATTTACTTAATTTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
72570746 AATCCTAATTTAATTTATTTT
66 AA-CCTAATTTAATTTATTTT
* *
72570767 AAACTCTAATTTAATTTATTTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
1 AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
72570832 AACCTTAATTTAA
66 AACC-TAATTTAA
72570845 ATAATTTTTA
Statistics
Matches: 150, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
85 46 0.31
86 102 0.68
87 2 0.01
ACGTcount: A:0.43, C:0.17, G:0.01, T:0.39
Consensus pattern (85 bp):
AAACCCTAATTTAATTTATCTAAAACTCTAGAACCCTAATTTACTTAATCTATTTAAAAACCATA
AACCTAATTTAATTTATTTT
Found at i:72571380 original size:20 final size:20
Alignment explanation
Indices: 72571352--72571389 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72571342 TTCATGTCTC
72571352 ATTTC-TTTTATCTATATTTA
1 ATTTCTTTTTA-CTATATTTA
*
72571372 ATTTTTTTTTACTATATT
1 ATTTCTTTTTACTATATT
72571390 GAATATACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTCTTTTTACTATATTTA
Found at i:72571793 original size:29 final size:30
Alignment explanation
Indices: 72571760--72571822 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
72571750 TATTGATTTA
72571760 TAAAATAT-AAAAGACAAAAACAACCAAAT
1 TAAAATATGAAAAGACAAAAACAACCAAAT
** *
72571789 TAAAATATGAAAAGATGAAAACATCCAAAT
1 TAAAATATGAAAAGACAAAAACAACCAAAT
72571819 TAAA
1 TAAA
72571823 CCAAAGAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.65, C:0.11, G:0.06, T:0.17
Consensus pattern (30 bp):
TAAAATATGAAAAGACAAAAACAACCAAAT
Found at i:72572090 original size:8 final size:8
Alignment explanation
Indices: 72572079--72572130 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
72572069 TTAATTTTTT
72572079 AAAATTAA
1 AAAATTAA
72572087 AAAA-TATA
1 AAAATTA-A
72572095 AAAATTAA
1 AAAATTAA
**
72572103 AAAATCTTT
1 AAAAT-TAA
72572112 AAAATTAA
1 AAAATTAA
*
72572120 AAAAATAA
1 AAAATTAA
72572128 AAA
1 AAA
72572131 TATATATTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
7 2 0.06
8 26 0.72
9 8 0.22
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (8 bp):
AAAATTAA
Found at i:72572100 original size:16 final size:16
Alignment explanation
Indices: 72572079--72572131 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
72572069 TTAATTTTTT
72572079 AAAATTAAAAAATATA
1 AAAATTAAAAAATATA
* *
72572095 AAAATTAAAAAATCTTT
1 AAAATTAAAAAAT-ATA
72572112 AAAATTAAAAAA-ATA
1 AAAATTAAAAAATATA
72572127 AAAAT
1 AAAAT
72572132 ATATATTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 6 0.19
16 13 0.41
17 13 0.41
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATTAAAAAATATA
Found at i:72573582 original size:22 final size:22
Alignment explanation
Indices: 72573552--72573633 Score: 146
Period size: 22 Copynumber: 3.7 Consensus size: 22
72573542 TGAGGTTTTA
*
72573552 TTCAAGCTTAGTGCCGGTGTTG
1 TTCAGGCTTAGTGCCGGTGTTG
72573574 TTCAGGCTTAGTGCCGGTGTTG
1 TTCAGGCTTAGTGCCGGTGTTG
*
72573596 TTCAGGCTTAGTGCCGGTGTTA
1 TTCAGGCTTAGTGCCGGTGTTG
72573618 TTCAGGCTTAGTGCCG
1 TTCAGGCTTAGTGCCG
72573634 AGCAAAATCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 58 1.00
ACGTcount: A:0.12, C:0.20, G:0.33, T:0.35
Consensus pattern (22 bp):
TTCAGGCTTAGTGCCGGTGTTG
Found at i:72576616 original size:24 final size:26
Alignment explanation
Indices: 72576584--72576632 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
72576574 TATATATATA
* *
72576584 TATTCGAATA-GATGTAT-TAAATTG
1 TATTAGAATATGAGGTATATAAATTG
72576608 TATTAGAATATGAGGTATATAAATT
1 TATTAGAATATGAGGTATATAAATT
72576633 TATATTGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
25 6 0.29
26 6 0.29
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (26 bp):
TATTAGAATATGAGGTATATAAATTG
Found at i:72579233 original size:49 final size:49
Alignment explanation
Indices: 72579172--72579346 Score: 215
Period size: 49 Copynumber: 3.5 Consensus size: 49
72579162 CTGGTATGCA
* * * *
72579172 TAGTAGCTTGCACTTAGTACTACACATACGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
* * * * * *
72579221 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCAGGTACACG
* *
72579272 TAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
*
72579321 TAGTAGCCTGCACTTAATACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
72579347 CGTGACCTCA
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 63 0.61
50 2 0.02
51 39 0.38
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACG
Found at i:72579284 original size:100 final size:100
Alignment explanation
Indices: 72579164--72579351 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
72579154 GAAGCTATCT
* * *
72579164 GGTATGCATAGTAGCTTGCACTTAGTACTACACATACGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCATGCACTTAGTACTACACATACGACCAATAATCCGGTACACGTAGTAGCC
*
72579229 TGCACTTAGTACTACACACGTGATCACAGTTTTCA
66 TGCACTTAATACTACACACGTGATCACAGTTTTCA
* *
72579264 GGTACGCATAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCATGCACTTAGTACTACACATACGACCAATAATCCGGTACACGTAGTAGCC
72579329 TGCACTTAATACTACACACGTGA
66 TGCACTTAATACTACACACGTGA
72579352 CCTCACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCATGCACTTAGTACTACACATACGACCAATAATCCGGTACACGTAGTAGCC
TGCACTTAATACTACACACGTGATCACAGTTTTCA
Found at i:72584677 original size:60 final size:58
Alignment explanation
Indices: 72584590--72584703 Score: 133
Period size: 58 Copynumber: 1.9 Consensus size: 58
72584580 GAAAACAATG
* * *
72584590 TCAAATTCAAGTACCAAATTGGACAAAAAAATACTTA-GTTATCAATTTAAGAAAAAAAAA
1 TCAAATTCAAGTACCAAATT-GA-ACAAAAATACTTAGGTAAT-AAGTTAAGAAAAAAAAA
* *
72584650 TCAAGTTCATGTACCAAATT-AATCAAAAATACTTAGGTAATAAGTTAAGAAAAA
1 TCAAATTCAAGTACCAAATTGAA-CAAAAATACTTAGGTAATAAGTTAAGAAAAA
72584704 GTGTAAAGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
57 1 0.02
58 24 0.51
59 4 0.09
60 18 0.38
ACGTcount: A:0.53, C:0.11, G:0.10, T:0.26
Consensus pattern (58 bp):
TCAAATTCAAGTACCAAATTGAACAAAAATACTTAGGTAATAAGTTAAGAAAAAAAAA
Found at i:72585265 original size:18 final size:19
Alignment explanation
Indices: 72585242--72585278 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
72585232 TACAAAATTC
72585242 AAATTTTT-AAAAAATTTT
1 AAATTTTTCAAAAAATTTT
*
72585260 AAATTTTTCACAAAATTTT
1 AAATTTTTCAAAAAATTTT
72585279 TAATAGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
AAATTTTTCAAAAAATTTT
Found at i:72585274 original size:19 final size:18
Alignment explanation
Indices: 72585230--72585278 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
72585220 ATGTTCTCCA
*
72585230 TTTACAAAA-TTCAAATT
1 TTTACAAAATTTTAAATT
*
72585247 TTTAAAAAATTTTAAATT
1 TTTACAAAATTTTAAATT
72585265 TTTCACAAAATTTT
1 TTT-ACAAAATTTT
72585279 TAATAGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 8 0.30
18 10 0.37
19 9 0.33
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTACAAAATTTTAAATT
Found at i:72585809 original size:13 final size:13
Alignment explanation
Indices: 72585788--72585871 Score: 96
Period size: 13 Copynumber: 6.5 Consensus size: 13
72585778 AAATTTTTCC
72585788 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
72585801 AAAGTACTTCTCA
1 AAAGCACTTCTCA
72585814 AAAGCACTTCTCA
1 AAAGCACTTCTCA
* * *
72585827 AAAACACTTTTCC
1 AAAGCACTTCTCA
* * *
72585840 ACAGTACTTTTCA
1 AAAGCACTTCTCA
*
72585853 AAAGCACTTTTCA
1 AAAGCACTTCTCA
72585866 AAAGCA
1 AAAGCA
72585872 ATGAATAACT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 60 1.00
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.27
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:72585822 original size:26 final size:26
Alignment explanation
Indices: 72585782--72585871 Score: 108
Period size: 26 Copynumber: 3.5 Consensus size: 26
72585772 ACACTTAAAT
* *
72585782 TTTTCCAAAGCACTTCTCAAAAGTAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
* *
72585808 TTCTCAAAAGCACTTCTCAAAAACAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
* * * *
72585834 TTTTCCACAGTACTTTTCAAAAGCAC
1 TTTTCAAAAGCACTTCTCAAAAGCAC
72585860 TTTTCAAAAGCA
1 TTTTCAAAAGCA
72585872 ATGAATAACT
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAGCAC
Found at i:72585835 original size:39 final size:39
Alignment explanation
Indices: 72585792--72585868 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
72585782 TTTTCCAAAG
72585792 CACTTCTCAAAAGTACTTCTCAAAAGCACTTCTCAAAAA
1 CACTTCTCAAAAGTACTTCTCAAAAGCACTTCTCAAAAA
* * * * *
72585831 CACTTTTCCACAGTACTTTTCAAAAGCACTTTTCAAAA
1 CACTTCTCAAAAGTACTTCTCAAAAGCACTTCTCAAAA
72585869 GCAATGAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (39 bp):
CACTTCTCAAAAGTACTTCTCAAAAGCACTTCTCAAAAA
Found at i:72586205 original size:19 final size:19
Alignment explanation
Indices: 72586183--72586246 Score: 85
Period size: 20 Copynumber: 3.4 Consensus size: 19
72586173 AAATTACAAA
*
72586183 AAAAATCAAAATAATTTTT
1 AAAAATTAAAATAATTTTT
72586202 AAAAATTTAAAATAATTTTT
1 AAAAA-TTAAAATAATTTTT
* *
72586222 AAAATTTAAAAT-ATTTAT
1 AAAAATTAAAATAATTTTT
72586240 AAAAATT
1 AAAAATT
72586247 TCAAATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 11 0.28
19 12 0.30
20 17 0.43
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAATTAAAATAATTTTT
Found at i:72586213 original size:20 final size:20
Alignment explanation
Indices: 72586190--72586252 Score: 94
Period size: 19 Copynumber: 3.2 Consensus size: 20
72586180 AAAAAAAATC
72586190 AAAATAATTTTTAAAAATTT
1 AAAATAATTTTTAAAAATTT
72586210 AAAATAATTTTT-AAAATTT
1 AAAATAATTTTTAAAAATTT
*
72586229 AAAAT-ATTTATAAAAATTT
1 AAAATAATTTTTAAAAATTT
*
72586248 CAAAT
1 AAAAT
72586253 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.12
19 23 0.57
20 12 0.30
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AAAATAATTTTTAAAAATTT
Found at i:72586237 original size:9 final size:9
Alignment explanation
Indices: 72586199--72586286 Score: 60
Period size: 8 Copynumber: 9.8 Consensus size: 9
72586189 CAAAATAATT
72586199 TTTAAAA-A
1 TTTAAAATA
72586207 TTTAAAATAA
1 TTTAAAAT-A
*
72586217 TTTTTAAA-A
1 -TTTAAAATA
72586226 TTTAAAATA
1 TTTAAAATA
*
72586235 TTTATAAAAA
1 TTTA-AAATA
*
72586245 TTTCAAAT-
1 TTTAAAATA
72586253 TTTAAAAT-
1 TTTAAAATA
*
72586261 TTTAAAAAA
1 TTTAAAATA
72586270 TTCTAAAA-A
1 TT-TAAAATA
72586279 TTCTAAAA
1 TT-TAAAA
72586287 AATATATAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
8 27 0.41
9 20 0.30
10 13 0.20
11 6 0.09
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (9 bp):
TTTAAAATA
Found at i:72586247 original size:19 final size:19
Alignment explanation
Indices: 72586190--72586311 Score: 85
Period size: 19 Copynumber: 6.5 Consensus size: 19
72586180 AAAAAAAATC
*
72586190 AAAATAATTTTTAAAAATTT
1 AAAAT-ATTTATAAAAATTT
*
72586210 AAAATAATTT-TTAAAATTT
1 AAAAT-ATTTATAAAAATTT
72586229 AAAATATTTATAAAAATTT
1 AAAATATTTATAAAAATTT
* *
72586248 -CAA-ATTT-TAAAATTTT
1 AAAATATTTATAAAAATTT
* *
72586264 AAAA-AATTCTAAAAATTCT
1 AAAATATTTATAAAAATT-T
* * *
72586283 AAAAAATATATAAAAAGGTT
1 AAAATATTTATAAAAA-TTT
72586303 AAAAT-TTTA
1 AAAATATTTA
72586312 AAATTTTTCT
Statistics
Matches: 83, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
16 8 0.10
17 9 0.11
18 13 0.16
19 29 0.35
20 23 0.28
21 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAATATTTATAAAAATTT
Found at i:72597452 original size:21 final size:21
Alignment explanation
Indices: 72597426--72597466 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72597416 AGACGAGCAA
* *
72597426 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
72597447 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
72597467 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:72605716 original size:55 final size:56
Alignment explanation
Indices: 72605606--72605718 Score: 138
Period size: 56 Copynumber: 2.0 Consensus size: 56
72605596 AATGTGTAAA
** * * * * * * *
72605606 TATTTTTTATTTAATTTGATATTTGAGTTTGATATTTTTATTCTTAATTTTGTATT
1 TATTTTTTATCCAATTTGATACTTGAATTTAACACTTTTATTCTTAAATTGGTATT
72605662 TATTTTTTATCCAATTTGATACTTGAATTTAACACTTTT-TTCTTAAATTGGTATT
1 TATTTTTTATCCAATTTGATACTTGAATTTAACACTTTTATTCTTAAATTGGTATT
72605717 TA
1 TA
72605719 ACTCTTTTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
55 16 0.33
56 32 0.67
ACGTcount: A:0.26, C:0.06, G:0.08, T:0.60
Consensus pattern (56 bp):
TATTTTTTATCCAATTTGATACTTGAATTTAACACTTTTATTCTTAAATTGGTATT
Done.