Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 221 of 332
Found at i:73356890 original size:27 final size:27
Alignment explanation
Indices: 73356860--73357245 Score: 400
Period size: 27 Copynumber: 14.3 Consensus size: 27
73356850 AGGGTAAAAC
* * *
73356860 GGTAATTTTATAAATCAGGGGTACTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
**
73356887 GGTAATTTTACAAGTC-GAGGGTATTTT
1 GGTAATTTTACAAACCAG-GGGTATTTT
** *** *
73356914 AATAATTTTACAGGTC-GAGGGTATTTC
1 GGTAATTTTACAAACCAG-GGGTATTTT
* * *
73356941 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
73356968 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* *
73356995 GATAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* * *
73357022 GGTAATTTTATAAACAAAGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
73357049 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
73357076 GGTGATTTTATAAACCAAGGGTATTCT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
73357103 AGTAATTTTAC-AACCTAGGGGTATTTT
1 GGTAATTTTACAAACC-AGGGGTATTTT
** *
73357130 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* *
73357157 AGTAATTTTACAAACCAGAGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* ** *
73357184 GATAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
73357211 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
73357238 AGTAATTT
1 GGTAATTT
73357246 GGTAAACTAA
Statistics
Matches: 300, Mismatches: 55, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
26 5 0.02
27 290 0.97
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAACCAGGGGTATTTT
Found at i:73356908 original size:81 final size:80
Alignment explanation
Indices: 73356823--73357170 Score: 211
Period size: 81 Copynumber: 4.3 Consensus size: 80
73356813 CTACCTTACA
* ** * * * *
73356823 AGGGTATTTTGGTAATTTTGTAAATTGAGGGTAAAACGGTAATTTTATAAATCAGGGGTACTTTG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
*
73356888 GTAATTTTACAAGTCG
66 GTAATTTTACAA-ACG
* ** *** *
73356904 AGGGTATTTTAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTG
1 AGGGTATTTTGATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
*
73356969 GTAATTTTACAAACT
66 GTAATTTTACAAACG
* ***** * * * *
73356984 AGGGGTATTTTGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAA-CAAAGGGTATT
1 A-GGGTATTTTGATAATTTTACAAATCGA-GGGTAAAACAGTAATTTCACAAATC-AGGGGTACT
* *
73357047 TTAGTAATTTTACAAACC
63 TTGGTAATTTTACAAACG
* * * * * ** * * *
73357065 AGGGGTATTTTGGTGATTTTATAAACCAAGGGT-ATTCTAGTAATTTTAC-AACCTAGGGGTATT
1 A-GGGTATTTTGATAATTTTACAAATCGAGGGTAAAAC-AGTAATTTCACAAATC-AGGGGTACT
** *
73357128 TTGGTAATTTTGTAAACCA
63 TTGGTAATTTTACAAA-CG
73357147 AGGGTATTTT-AGTAATTTTACAAA
1 AGGGTATTTTGA-TAATTTTACAAA
73357171 CCAGAGGTAT
Statistics
Matches: 215, Mismatches: 44, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
80 9 0.04
81 202 0.94
82 4 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (80 bp):
AGGGTATTTTGATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTG
GTAATTTTACAAACG
Found at i:73357252 original size:54 final size:54
Alignment explanation
Indices: 73356860--73357245 Score: 463
Period size: 54 Copynumber: 7.1 Consensus size: 54
73356850 AGGGTAAAAC
* * * * **
73356860 GGTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTT
** * *** * * * *
73356914 AATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
* * * *
73356968 GGTAATTTTACAAACTAGGGGTATTTT-GATAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTT
*
73357022 GGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
* *
73357076 GGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTAC-AACCTAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACC-AGGGGTATTTT
* *
73357130 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAGAGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
* * *
73357184 GATAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
*
73357238 AGTAATTT
1 GGTAATTT
73357246 GGTAAACTAA
Statistics
Matches: 287, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
53 5 0.02
54 276 0.96
55 6 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
Found at i:73372448 original size:18 final size:18
Alignment explanation
Indices: 73372425--73372461 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
73372415 TCTTTAGAGA
73372425 TTAAATTGTGTGTTTTGT
1 TTAAATTGTGTGTTTTGT
73372443 TTAAATTGTGTGTTTTGT
1 TTAAATTGTGTGTTTTGT
73372461 T
1 T
73372462 ACATGTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.22, T:0.62
Consensus pattern (18 bp):
TTAAATTGTGTGTTTTGT
Found at i:73374720 original size:46 final size:45
Alignment explanation
Indices: 73374662--73374834 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
73374652 GGGTTATTGT
* *
73374662 GAGCTAGTGTAAGACATGCCTGGGACATGCATCAGCCATAATATAA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAACAT-A
* * *
73374708 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGAGAC-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-T-A-ACATA
* * * * *
73374756 GTGCTAGTGTAACACATGTCTGTGACATGCATCAGCCTTGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-A-ACATA
*
73374803 -AGCTAGTGTAAGACATGACTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
73374835 GACTACAAGA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
46 52 0.50
47 32 0.31
48 18 0.17
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAACATA
Found at i:73382928 original size:27 final size:27
Alignment explanation
Indices: 73382898--73383159 Score: 269
Period size: 27 Copynumber: 9.7 Consensus size: 27
73382888 TTAGTTTACC
73382898 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
73382925 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
73382952 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * * *
73382979 AAATTACTAAAATACCATTTGTTTATG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73383006 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73383033 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73383060 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
73383087 AAATTACTGAAATA-CCCTCGAG-CTGTA
1 AAATTACCAAAATACCCCT-G-GTTTGTA
*** **
73383114 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
73383141 AAATTACCAAAGTACCCCT
1 AAATTACCAAAATACCCCT
73383160 AATTTACAGA
Statistics
Matches: 195, Mismatches: 36, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.02
27 187 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:73383214 original size:27 final size:27
Alignment explanation
Indices: 73382898--73383211 Score: 249
Period size: 27 Copynumber: 11.6 Consensus size: 27
73382888 TTAGTTTACC
*
73382898 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * **
73382925 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
73382952 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* ** * *
73382979 AAATTACTAAAATACCATTTG-TTTATG
1 AAATTACCAAAATACC-CCTGATTTGTA
* *
73383006 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
73383033 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
73383060 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
73383087 AAATTACTGAAATA-CCCTCGAGCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
73383114 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * **
73383141 AAATTACCAAAGTACCCCTAATTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
* *** * **
73383168 GAATTACCATTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
73383195 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
73383212 TTGTAGGGTA
Statistics
Matches: 234, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
26 6 0.03
27 221 0.94
28 7 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:73383232 original size:27 final size:27
Alignment explanation
Indices: 73383199--73383446 Score: 275
Period size: 27 Copynumber: 9.2 Consensus size: 27
73383189 TTTACAAAAT
73383199 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
**
73383226 TGTCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
73383253 TACCGAAATACCCCTATAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * * *
73383280 TACCAAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** *
73383307 TACTAAAATACCCCTT-TAGGGTAGAAT
1 TACCGAAATA-CCCTTGTAGGGTAGAAA
73383334 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
73383361 TATCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * * *
73383388 TACTAAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
73383415 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
73383441 TTACCG
1 -TACCG
73383447 TTTTACCCCT
Statistics
Matches: 191, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.04
27 180 0.94
28 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:73383431 original size:81 final size:81
Alignment explanation
Indices: 73383199--73383446 Score: 331
Period size: 81 Copynumber: 3.1 Consensus size: 81
73383189 TTTACAAAAT
* * * * *
73383199 TACCGAAATACCCTTGTAGGGTAGAAATGT-C-GAAATACCCTTGTAGGGTAGAAATACCGAAAT
1 TACCGAAATACCCCTGTAGGGTAG-AAT-TACTAAAATACCCCTATAGGGTAGAATTACCGAAAT
* *
73383262 ACCCCTATAGGGTAGAAA
64 ACCCTTGTAGGGTAGAAA
* * *
73383280 TACCAAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTTTAGGGTAGAATTACCGAAATAC
1 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATAC
73383345 CCTTGTAGGGTAGAAA
66 CCTTGTAGGGTAGAAA
* *
73383361 TATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATAC
1 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATAC
*
73383426 CCTTGTGGGGTA-AAA
66 CCTTGTAGGGTAGAAA
73383441 TTACCG
1 -TACCG
73383447 TTTTACCCCT
Statistics
Matches: 148, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 7 0.05
81 140 0.95
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATAC
CCTTGTAGGGTAGAAA
Found at i:73383968 original size:6 final size:6
Alignment explanation
Indices: 73383959--73384148 Score: 120
Period size: 6 Copynumber: 30.8 Consensus size: 6
73383949 TGGCATTCAC
* *
73383959 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
73384009 ATTCTA ATTTTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * *
73384058 ATTCTG -TTACCTA ATTTTG ATTTTG ATTTTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
73384108 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
73384149 AGTTCTAATA
Statistics
Matches: 147, Mismatches: 22, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
5 10 0.07
6 118 0.80
7 11 0.07
8 8 0.05
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:73384028 original size:37 final size:37
Alignment explanation
Indices: 73383982--73384136 Score: 154
Period size: 37 Copynumber: 4.5 Consensus size: 37
73383972 TTCTATTACC
* *
73383982 TGATACTGATTCTGATTCTGTTACCTAATTCTAATTT
1 TGATTCTGATTCTGATTCTGTTACCTAATTCTGATTT
*
73384019 TGGTTCTGATTCTGATTCTGTTA-C-----CTGA---
1 TGATTCTGATTCTGATTCTGTTACCTAATTCTGATTT
*
73384047 T-A--CTGATTCTGATTCTGTTACCTAATTTTGATTT
1 TGATTCTGATTCTGATTCTGTTACCTAATTCTGATTT
* * * *
73384081 TGATTTTGATTTTGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGATTCTGATTCTGTTACCTAATTCTGATTT
73384118 TGATTCTGATTCTGATTCT
1 TGATTCTGATTCTGATTCT
73384137 CATTTTGATT
Statistics
Matches: 94, Mismatches: 12, Indels: 24
0.72 0.09 0.18
Matches are distributed among these distances:
25 18 0.19
26 1 0.01
28 1 0.01
31 6 0.06
34 1 0.01
35 1 0.01
36 1 0.01
37 65 0.69
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.50
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTTACCTAATTCTGATTT
Found at i:73384057 original size:62 final size:62
Alignment explanation
Indices: 73383959--73384148 Score: 258
Period size: 62 Copynumber: 3.1 Consensus size: 62
73383949 TGGCATTCAC
*
73383959 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTTTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTTTG
* * *
73384021 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTTTGATTTTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTTTG
* * * * * * *
73384083 ATTTTGATTTTGATTCTGTCACCTAATTCTGATTCTGATTCTGATT--CTGATTCTCATTTTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTACCTAATTCTAATTTTG
73384144 ATTCT
1 ATTCT
73384149 AGTTCTAATA
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
61 16 0.14
62 95 0.84
63 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATTTTG
Found at i:73384085 original size:25 final size:25
Alignment explanation
Indices: 73384024--73384072 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
73384014 AATTTTGGTT
*
73384024 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
73384049 CTGATTCTGATTCTGTTACCTAAT
1 CTGATTCTGATTCTGTTACCTAAT
73384073 TTTGATTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:73386337 original size:43 final size:43
Alignment explanation
Indices: 73386253--73386362 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 43
73386243 TACTTATAAG
* * *
73386253 ACCATGTCTGGGACATTGGCATTGTATTGAGATTACGTGTAAA
1 ACCATGTCTGGGACATTGGCATCGTAATGAGATTACATGTAAA
* * * *
73386296 ACCATGTCTTGGACATTGGCATCGTTAAT-CGATTTCATGTAAG
1 ACCATGTCTGGGACATTGGCATCG-TAATGAGATTACATGTAAA
* * *
73386339 ACCCTGTCCGGGACAGTGGCATCG
1 ACCATGTCTGGGACATTGGCATCG
73386363 GTATGTGATA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 52 0.95
44 3 0.05
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
ACCATGTCTGGGACATTGGCATCGTAATGAGATTACATGTAAA
Found at i:73389696 original size:43 final size:42
Alignment explanation
Indices: 73389600--73389706 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 42
73389590 TTTTATTAAG
* *
73389600 ATTACATGTAAGACCATGTCTGGGACATTGGCATCATTGGTCA
1 ATTACATGTAAGACCATATCTGGGACAGTGGCATCATTGGT-A
* * * *
73389643 ATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATTTGT-
1 ATTACATGTAAGACCATATCTGGGACAGTGGCATC-ATTGGTA
73389685 ATTAACATGTAAGACCATATCT
1 ATT-ACATGTAAGACCATATCT
73389707 AGGATATGGC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 3 0.06
43 45 0.85
44 5 0.09
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (42 bp):
ATTACATGTAAGACCATATCTGGGACAGTGGCATCATTGGTA
Found at i:73394756 original size:47 final size:47
Alignment explanation
Indices: 73394702--73395251 Score: 802
Period size: 47 Copynumber: 11.6 Consensus size: 47
73394692 TATTTGAATA
*
73394702 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
73394749 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
73394798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
73394845 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73394894 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGTCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
73394941 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73394990 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73395037 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73395084 AATGTGAACA-TGTGTATGTGTGATAAGGCCAAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73395131 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
73395178 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73395225 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73395252 TCCCGAAGGG
Statistics
Matches: 467, Mismatches: 28, Indels: 16
0.91 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 329 0.70
49 136 0.29
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:73394796 original size:22 final size:22
Alignment explanation
Indices: 73394768--73394843 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
73394758 GTGTATATAT
73394768 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** ***
73394790 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
73394814 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
73394837 ATGTGAT
1 ATGTGAT
73394844 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:73394810 original size:96 final size:96
Alignment explanation
Indices: 73394702--73395251 Score: 832
Period size: 96 Copynumber: 5.8 Consensus size: 96
73394692 TATTTGAATA
73394702 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
73394767 TATGTGATAAGGCCTAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
73394798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
73394863 TATGTGATAAGGCCTAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
73394894 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGTCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
73394959 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
73394990 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--CA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* *
73395051 TATATGAGATAAGGCCGAATGACCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
73395084 AATGTGAACA-TGTGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA-TG--CA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
73395145 TATATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73395178 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
73395242 -ATGTGATAAG
66 TATGTGATAAG
73395252 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
93 2 0.00
94 183 0.43
95 1 0.00
96 240 0.56
97 2 0.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:73395129 original size:22 final size:22
Alignment explanation
Indices: 73395102--73395223 Score: 57
Period size: 22 Copynumber: 5.3 Consensus size: 22
73395092 CATGTGTATG
73395102 TGTGATAAGGCCAAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
* ** *
73395124 TGTGATGAATGTGAACAT-GCATATA
1 TGTGAT-AAGGCCAA-ATGGC-CA-A
* *
73395149 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
* ** ***
73395171 TGTGATGAATGTGAAAGTGTATATA
1 TGTGAT-AAGGCCAAA-TGGCCA-A
*
73395196 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCAAATGGCCAA
73395218 TGTGAT
1 TGTGAT
73395224 GGATGTGGAA
Statistics
Matches: 67, Mismatches: 25, Indels: 16
0.62 0.23 0.15
Matches are distributed among these distances:
22 19 0.28
23 18 0.27
24 17 0.25
25 13 0.19
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCAAATGGCCAA
Found at i:73397681 original size:40 final size:40
Alignment explanation
Indices: 73397536--73397716 Score: 199
Period size: 40 Copynumber: 4.5 Consensus size: 40
73397526 AATGATGTCC
* * * * * *
73397536 GGGCTAAGTCCCGTAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCT
* *
73397576 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCT
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCT
*
73397616 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
* *
73397655 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCT
73397695 GGGCTAAGTCCCGAAGAGCATT
1 GGGCTAAGTCCCGAAG-GCATT
73397717 CATGCTAGTG
Statistics
Matches: 120, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.29
40 70 0.58
41 15 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
Found at i:73397737 original size:40 final size:40
Alignment explanation
Indices: 73397693--73398047 Score: 539
Period size: 40 Copynumber: 8.9 Consensus size: 40
73397683 GTTACTATAA
73397693 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
*
73397733 CCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
73397773 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
73397813 CCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
*
73397853 CCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
73397893 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
73397933 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* ** * * * *
73397973 CCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * * *
73398013 CCGAGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
73398048 CGTGTATTCG
Statistics
Matches: 289, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 289 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:73400290 original size:37 final size:37
Alignment explanation
Indices: 73400229--73400304 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
73400219 TTATTACGAA
* * * *
73400229 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
73400266 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
73400303 GT
1 GT
73400305 ATTTAGAGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:73400504 original size:47 final size:47
Alignment explanation
Indices: 73400426--73400657 Score: 383
Period size: 47 Copynumber: 4.9 Consensus size: 47
73400416 CCCTTCGGGA
* * * * * *
73400426 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73400473 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73400520 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73400567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73400614 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
73400658 CGCCATACTA
Statistics
Matches: 174, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73404097 original size:40 final size:40
Alignment explanation
Indices: 73404057--73404361 Score: 497
Period size: 40 Copynumber: 7.7 Consensus size: 40
73404047 TGATTACTCT
* * * *
73404057 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* * * *
73404097 TCGAGG-TTTAGCACGGATATATTACTAGCACGAATGCTCT
1 TCG-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
73404137 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
73404177 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
73404217 TCGGGACTTAGCCC-GATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
73404256 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
73404296 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
73404336 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
73404362 CTCAATTCTC
Statistics
Matches: 248, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
39 40 0.16
40 206 0.83
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:73404280 original size:119 final size:119
Alignment explanation
Indices: 73404057--73404361 Score: 486
Period size: 119 Copynumber: 2.5 Consensus size: 119
73404047 TGATTACTCT
* * * * * * *
73404057 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATATTA
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCG-GGACTTAGC-CCGATATATCA
*
73404121 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
64 CTAGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
73404177 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGATATATCACT
* *
73404242 AGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
66 AGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
73404296 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCC-GATATATCAC
73404361 T
65 T
73404362 CTCAATTCTC
Statistics
Matches: 173, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
119 118 0.68
120 55 0.32
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (119 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGATATATCACT
AGCACGAATGCTCCTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
Found at i:73405623 original size:37 final size:37
Alignment explanation
Indices: 73405573--73405651 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
73405563 TTATTACGAA
* * * *
73405573 GTCTTACCTGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73405610 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73405647 GTCTT
1 GTCTT
73405652 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:73405839 original size:47 final size:47
Alignment explanation
Indices: 73405768--73405952 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
73405758 CCCTTCGGGA
* * * * *
73405768 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73405815 CCTATCACATATATACACTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73405862 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73405909 CTTATCACATATATACACTTTCACATTCATCTCATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
73405953 CGCCATACTA
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73409622 original size:38 final size:39
Alignment explanation
Indices: 73409577--73409939 Score: 136
Period size: 47 Copynumber: 8.2 Consensus size: 39
73409567 ATATTTGAAT
*
73409577 AAATGTGAAAGTGTATATATGTGATAAGGGCTAATGGCC
1 AAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
73409616 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 ------A--AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
73409663 AATGTGATGAATGTGAAAGTGTATATATGTG-T---G--TGAT-G--
1 ------A--AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
73409701 -AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 AAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
73409741 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 ------A--AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
73409790 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 ------A--AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
73409837 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 ------A--AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
73409884 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCC
1 ------A--AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
73409933 -AATGTGA
1 AAATGTGA
73409940 TGAATGTGAA
Statistics
Matches: 289, Mismatches: 5, Indels: 53
0.83 0.01 0.15
Matches are distributed among these distances:
29 12 0.04
31 10 0.03
32 1 0.00
35 1 0.00
37 3 0.01
38 1 0.00
40 8 0.03
41 3 0.01
43 1 0.00
45 1 0.00
46 1 0.00
47 161 0.56
49 86 0.30
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (39 bp):
AAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:73409632 original size:47 final size:47
Alignment explanation
Indices: 73409578--73409693 Score: 223
Period size: 47 Copynumber: 2.5 Consensus size: 47
73409568 TATTTGAATA
*
73409578 AATGTGAAAGTGTATATATGTGATAAGGGCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
73409625 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
73409672 AATGTGAAAGTGTATATATGTG
1 AATGTGAAAGTGTATATATGTG
73409694 TGTGATGAAT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:73409687 original size:94 final size:94
Alignment explanation
Indices: 73409578--73410156 Score: 652
Period size: 94 Copynumber: 6.3 Consensus size: 94
73409568 TATTTGAATA
*
73409578 AATGTGAAAGTGTATATATGTGATAAGGGCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
73409643 TGTGATAAGGCCTAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
73409672 AATGTGAAAGTGTATATATGTG-T---G--TGAT-G--AATGTGA--AA-GTGTATATATATGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTG-A-A-A-GTGT-
* **
73409725 ATA-A-G-GCCTAATGGCC-AATGTGATGAATGTGA--
61 ATATATGTG-ATAA-GGCCGAATG-G-CCAATGTGATG
*
73409757 AA-GT----GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
73409817 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
*
73409846 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
73409911 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
73409942 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
73410005 TATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73410036 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
73410100 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
73410130 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73410157 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 33, Indels: 76
0.79 0.06 0.15
Matches are distributed among these distances:
80 12 0.03
81 1 0.00
82 3 0.01
83 3 0.01
84 5 0.01
85 18 0.04
86 12 0.03
87 21 0.05
88 12 0.03
89 18 0.04
90 5 0.01
91 3 0.01
92 3 0.01
93 3 0.01
94 209 0.50
96 84 0.20
97 2 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:73409722 original size:31 final size:29
Alignment explanation
Indices: 73409665--73409724 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
73409655 TAATGGCCAA
73409665 TGTGATGAATGTGAAAGTGTATATATGTG
1 TGTGATGAATGTGAAAGTGTATATATGTG
*
73409694 TGTGATGAATGTGAAAGTGTATATATATG
1 TGTGATGAATGTGAAAGTGTATATATGTG
73409723 TG
1 TG
73409725 ATAAGGCCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.30, T:0.38
Consensus pattern (29 bp):
TGTGATGAATGTGAAAGTGTATATATGTG
Found at i:73409724 original size:47 final size:46
Alignment explanation
Indices: 73409694--73410156 Score: 420
Period size: 47 Copynumber: 9.8 Consensus size: 46
73409684 TATATATGTG
73409694 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG---A
73409743 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG---A
73409792 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT-G--GA
73409839 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT-G--GA
*
73409886 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG---A
* * *
73409935 TGTGATGAATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGG---A
* * *
73409982 TGTGATGAATGTGAACA-TG--CATATATGAGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGG---A
* * *
73410029 TGTGATGAATGTGAACA-TG--CATATATGAGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGG---A
*
73410076 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG---A
* *
73410123 TGTGATGGATGTGGAAGTGTATA-A-ATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAG
73410157 TCCCGAAGGG
Statistics
Matches: 391, Mismatches: 11, Indels: 26
0.91 0.03 0.06
Matches are distributed among these distances:
46 2 0.01
47 275 0.70
48 3 0.01
49 109 0.28
50 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (46 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGA
Found at i:73409734 original size:78 final size:76
Alignment explanation
Indices: 73409618--73409773 Score: 285
Period size: 78 Copynumber: 2.0 Consensus size: 76
73409608 TAATGGCCAA
73409618 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
*
73409683 GTATATATGTG
66 GTATATATATG
73409694 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
73409759 GTGTATATATATG
64 GTGTATATATATG
73409772 TG
1 TG
73409774 ATAAGGCCTA
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
76 19 0.25
78 58 0.75
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (76 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
GTATATATATG
Found at i:73409871 original size:143 final size:143
Alignment explanation
Indices: 73409694--73410156 Score: 720
Period size: 143 Copynumber: 3.2 Consensus size: 143
73409684 TATATATGTG
73409694 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
73409759 GTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
64 GTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
73409824 AGGCCTAATGGCCGA
129 AGGCCGAATGGCCAA
*
73409839 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
* *
73409904 GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAA
66 GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAA
73409968 GGCCGAATGGCCAA
130 GGCCGAATGGCCAA
* * *
73409982 TGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-A
* *
73410046 -TG--CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
64 GTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
73410108 AGGCCGAATGGCCAA
129 AGGCCGAATGGCCAA
* * *
73410123 TGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAG
73410157 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 19, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
140 2 0.01
141 96 0.33
143 174 0.59
144 3 0.01
145 19 0.06
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (143 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT
GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCGAATGGCCAA
Found at i:73422716 original size:43 final size:42
Alignment explanation
Indices: 73422669--73422782 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
73422659 TGTGATTACA
*
73422669 TGTAAGACCATGTCTGGGACATTGGCAT-TGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATAT-TAAT-AGATTATG
* *
73422712 TGTAAGACCATGTCTGGGACATTGGCATCATTAATCGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCAT-ATTAATAGATTATG
* * *
73422755 TGTAAGACCCTGTCCGGGACAGTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
73422783 CGATATATGA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
43 59 0.94
44 3 0.05
45 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATATTAATAGATTATG
Found at i:73431109 original size:19 final size:17
Alignment explanation
Indices: 73431077--73431112 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
73431067 AATTCCAATT
73431077 CAATTTCATATTTTCAC
1 CAATTTCATATTTTCAC
73431094 CAATTTACACTATTTTCAC
1 CAATTT-CA-TATTTTCAC
73431113 TTTTGTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (17 bp):
CAATTTCATATTTTCAC
Found at i:73432708 original size:13 final size:13
Alignment explanation
Indices: 73432690--73432715 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73432680 GCTCAGCAGG
73432690 GACACGCCCGTGT
1 GACACGCCCGTGT
73432703 GACACGCCCGTGT
1 GACACGCCCGTGT
73432716 CAAGGCTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:73440652 original size:76 final size:78
Alignment explanation
Indices: 73440479--73440673 Score: 218
Period size: 76 Copynumber: 2.5 Consensus size: 78
73440469 AAACCCAAAC
* * * * * * * *
73440479 ATAACACCAGCAAGAAGCCTACGGG-ACTTTAAACTCAGATATAATACCAGCACTAGGCCTGCGG
1 ATAATACCAGCACGAAGCCTGCGGGTA-TTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGG
73440543 GATTTAACCCGGAT
65 GATTTAACCCGGAT
* *
73440557 ATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATATTACCAGCACGAAGCCTGTGGG
1 ATAATACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGG
73440620 ATTTAACCCGGAT
66 ATTTAACCCGGAT
* * * *
73440633 ATAATTCCAGCA-TATAGCCTGTGGGTCTTTAAGCCCGGATA
1 ATAATACCAGCACGA-AGCCTGCGGGTATTTAAGCCCGGATA
73440674 CACATCAAAT
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
75 1 0.01
76 59 0.58
77 10 0.10
78 31 0.31
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (78 bp):
ATAATACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCGGAT
Found at i:73440657 original size:38 final size:38
Alignment explanation
Indices: 73440479--73440644 Score: 224
Period size: 38 Copynumber: 4.3 Consensus size: 38
73440469 AAACCCAAAC
* * * * *
73440479 ATAACACCAGCAAGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* *
73440519 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
73440557 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
73440595 ATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
73440633 ATAATTCCAGCA
1 ATAATACCAGCA
73440645 TATAGCCTGT
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 89 0.79
39 3 0.03
40 21 0.19
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:73446195 original size:36 final size:37
Alignment explanation
Indices: 73446123--73446200 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
73446113 TTATTACGAA
* *
73446123 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
73446160 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
73446196 GTCTT
1 GTCTT
73446201 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:73446469 original size:47 final size:47
Alignment explanation
Indices: 73446319--73446744 Score: 701
Period size: 47 Copynumber: 9.1 Consensus size: 47
73446309 CCCTTCGGGA
* * * * * * *
73446319 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73446366 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73446412 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73446459 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73446506 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73446553 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73446600 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73446647 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73446694 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73446741 CTTA
1 CTTA
73446745 CTATCATTTC
Statistics
Matches: 362, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 40 0.11
47 322 0.89
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73449140 original size:57 final size:58
Alignment explanation
Indices: 73449063--73449171 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
73449053 GCCCACTGAT
* *
73449063 CGATCTCGCACACATAGTGCTTGGTTGAA-GAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTAC
* * * *
73449120 CGATTTCGCACACATTGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTC
73449172 TAATCATTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 25 0.56
58 20 0.44
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTAC
Found at i:73449386 original size:43 final size:43
Alignment explanation
Indices: 73449325--73449589 Score: 404
Period size: 43 Copynumber: 6.2 Consensus size: 43
73449315 CCTTGCTTGA
** * * *
73449325 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATATAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
** * * *
73449368 ATCACTAGCACGGAGCCTGCTAGGCACGAAGGCCTGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
73449411 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
73449454 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCAAATACTC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
73449497 ATCACCGGCACGAATCCTGCTAGGCAGAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
73449540 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
73449583 ATCACCG
1 ATCACCG
73449590 AGTTTCATGC
Statistics
Matches: 201, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 201 1.00
ACGTcount: A:0.32, C:0.33, G:0.23, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
Found at i:73451235 original size:38 final size:38
Alignment explanation
Indices: 73451148--73451313 Score: 215
Period size: 38 Copynumber: 4.3 Consensus size: 38
73451138 AAACCCAAAC
* * * *
73451148 ATAACACCAGCACGGAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGAT
* * *
73451188 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
73451226 ATAATACCAGCACGAAGCCTACGGAATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
* *
73451264 ATATTACCAGCACGAAGCCTACAGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
*
73451302 ATAATTCCAGCA
1 ATAATACCAGCA
73451314 TATAGCCTGT
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 86 0.78
39 3 0.03
40 21 0.19
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
Found at i:73463918 original size:47 final size:47
Alignment explanation
Indices: 73463841--73464343 Score: 819
Period size: 47 Copynumber: 10.6 Consensus size: 47
73463831 GATAATTGTG
73463841 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73463890 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73463937 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73463986 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73464033 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73464079 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73464128 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73464177 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73464224 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
73464271 ATGTGAAAGTGTACATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73464318 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
73464344 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 19, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 20 0.05
47 259 0.60
48 25 0.06
49 126 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:73463968 original size:96 final size:96
Alignment explanation
Indices: 73463841--73464343 Score: 840
Period size: 96 Copynumber: 5.3 Consensus size: 96
73463831 GATAATTGTG
73463841 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
73463906 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
73463937 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
73464002 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73464033 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
73464095 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
73464128 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
73464193 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
73464224 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
73464287 ATGTGACAGGGCCGAGTGGCCAATGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
73464318 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
73464344 TCCCGAAGGG
Statistics
Matches: 386, Mismatches: 14, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
93 20 0.05
94 119 0.31
95 48 0.12
96 154 0.40
97 25 0.06
98 20 0.05
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:73464259 original size:238 final size:238
Alignment explanation
Indices: 73463841--73464343 Score: 879
Period size: 238 Copynumber: 2.1 Consensus size: 238
73463831 GATAATTGTG
73463841 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
73463906 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAA
*
73463971 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
130 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
73464036 TGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
195 TGAAAGTGTACATATGTGACAAGGCCGAATGGCCAATGTGATGA
73464079 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
73464144 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTA
64 ATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTA
*
73464208 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
129 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
73464273 GTGAAAGTGTACATATGTGACAGGGCCGAGTGGCCAATGTGATGG
194 GTGAAAGTGTACATATGTGACAAGGCCGAATGGCCAATGTGATGA
73464318 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
73464344 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
237 10 0.04
238 175 0.69
239 23 0.09
240 46 0.18
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (238 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAAT
AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTACATATGTGACAAGGCCGAATGGCCAATGTGATGA
Found at i:73470291 original size:40 final size:40
Alignment explanation
Indices: 73470129--73470292 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
73470119 TTGAATGATG
* *
73470129 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
73470169 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
* * *
73470208 TTCCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* *
73470248 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
73470288 TCCGG
1 TCCGG
73470293 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:73470292 original size:79 final size:80
Alignment explanation
Indices: 73470129--73470276 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 80
73470119 TTGAATGATG
*
73470129 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
73470194 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * * **
73470209 TCCGGGCTAAG-CTCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
73470271 TTGTGC
64 TTGTGC
73470277 TAGTAGCTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.02
79 40 0.68
80 18 0.31
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:73478193 original size:40 final size:40
Alignment explanation
Indices: 73478149--73478351 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
73478139 TTGAATGATG
* * *
73478149 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
73478189 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
*
73478228 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
73478267 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
73478307 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
73478347 TCCGG
1 TCCGG
73478352 TTAAATTCCG
Statistics
Matches: 142, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
38 24 0.17
39 24 0.17
40 86 0.61
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:73478284 original size:78 final size:81
Alignment explanation
Indices: 73478149--73478332 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 81
73478139 TTGAATGATG
*
73478149 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73478213 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
73478228 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
73478290 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
73478307 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73478333 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 49 0.53
79 28 0.30
80 14 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:73478350 original size:80 final size:77
Alignment explanation
Indices: 73478202--73478365 Score: 213
Period size: 79 Copynumber: 2.1 Consensus size: 77
73478192 GGACTAAGAT
* **
73478202 CCGAAGGCATTTGTGCGAGATACTAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
73478267 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
73478280 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
73478344 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
73478359 CCGAAGG
1 CCGAAGG
73478366 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 24 0.32
79 26 0.35
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:73480325 original size:20 final size:20
Alignment explanation
Indices: 73480281--73480331 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
73480271 TGCAAAGGTG
*
73480281 AGAAGAGGGGA-AAAGGGAA
1 AGAAGAGGGGAGAAAAGGAA
*
73480300 AG-AGAGGGGAGAAAATGAA
1 AGAAGAGGGGAGAAAAGGAA
*
73480319 AGAAGAGTGGAGA
1 AGAAGAGGGGAGA
73480332 GTTTAGGGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 8 0.30
19 10 0.37
20 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.45, T:0.04
Consensus pattern (20 bp):
AGAAGAGGGGAGAAAAGGAA
Found at i:73484018 original size:27 final size:27
Alignment explanation
Indices: 73483985--73484447 Score: 566
Period size: 27 Copynumber: 17.2 Consensus size: 27
73483975 AAAGTACTCC
*
73483985 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73484012 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73484039 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73484066 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
73484093 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73484120 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
73484147 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73484174 C-AGTTTACAGAATTACCGTTTTACCAT
1 CGA-TTTACAGAATTACCGTTTTACCCT
73484201 CGATTTACAGAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73484227 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73484254 CGATTCACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73484281 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73484308 CGATTTACAGAATTACAGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
73484335 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73484362 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* * * *
73484389 -TAGTTTACAAAATTATCGTTTTACGCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73484416 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73484443 TGATT
1 CGATT
73484448 GTGAAATTAC
Statistics
Matches: 374, Mismatches: 45, Indels: 34
0.83 0.10 0.08
Matches are distributed among these distances:
25 1 0.00
26 29 0.08
27 336 0.90
28 8 0.02
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:73484443 original size:54 final size:54
Alignment explanation
Indices: 73483985--73484442 Score: 667
Period size: 54 Copynumber: 8.5 Consensus size: 54
73483975 AAAGTACTCC
* *
73483985 CGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
* *
73484039 CGATTTACAGAATTATCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
*
73484093 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
* *
73484147 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
*
73484201 CGATTTACAGAATTA-CGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
* *
73484254 CGATTCACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
* *
73484308 CGATTTACAGAATTACAGTTTTACCCTCGATTTGTA-A-AATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTC-AGTT-TACAGAATTACT-GTTTTACCCT
* * * * *
73484362 TGATTTACAGAATTACTAG-TTTACCCTTAGTTTACAAAATTA-TCGTTTTACGCT
1 CGATTTACAGAATTAC-CGTTTTACCCTCAGTTTACAGAATTACT-GTTTTACCCT
*
73484416 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73484443 TGATTGTGAA
Statistics
Matches: 369, Mismatches: 27, Indels: 16
0.90 0.07 0.04
Matches are distributed among these distances:
52 2 0.01
53 55 0.15
54 304 0.82
55 6 0.02
56 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCT
Found at i:73484482 original size:27 final size:27
Alignment explanation
Indices: 73484452--73484647 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
73484442 TTGATTGTGA
*
73484452 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73484479 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * **
73484506 AAATACTGAAATACCCTTATAGGACAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73484533 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73484560 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73484587 AAATACCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
73484614 AATTACAGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
73484641 AATTACC
1 AATTACC
73484648 ATTTTGCCCC
Statistics
Matches: 138, Mismatches: 31, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:73484520 original size:54 final size:54
Alignment explanation
Indices: 73484450--73484647 Score: 236
Period size: 54 Copynumber: 3.6 Consensus size: 54
73484440 CCTTGATTGT
* *
73484450 GAAATTACTGAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTA
1 GAAA-TACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTA
* ** *
73484505 GAAATACTGAAATACCCTTATAGGACAGAATTACCAAAATACCCCTATAGGGTA
1 GAAATACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTA
* * * *
73484559 GAATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCACTGTAGGGTA
1 GAAATACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTA
* * * * *
73484613 GAATTACAGAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACTGAAATACCCTTGTAGGGTAGAATTACC
73484648 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 117 0.96
55 4 0.03
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (54 bp):
GAAATACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTA
Found at i:73484639 original size:81 final size:82
Alignment explanation
Indices: 73484452--73484645 Score: 234
Period size: 81 Copynumber: 2.4 Consensus size: 82
73484442 TTGATTGTGA
* *
73484452 AATTACTGAAATACCCCTGTAGGGTAGAATT-TCCGAAATACCCCTATAGGGTAGAAATACTGAA
1 AATTACAGAAATACCCCTGTAGGGTAGAATTATCCGAAATACCCCTATAGGGTAGAAATACCGAA
73484516 ATACCCTTATAGGACAG
66 ATACCCTTATAGGACAG
* * *
73484533 AATTACCA-AAATACCCCTATAGGGTAGAATTAT-CGAAATACCCTTGTAGGGTAGAAATACCGA
1 AATTA-CAGAAATACCCCTGTAGGGTAGAATTATCCGAAATACCCCTATAGGGTAGAAATACCGA
* **
73484596 AATACCAC-TGTAGGGTAG
65 AATACC-CTTATAGGACAG
* * * *
73484614 AATTACAGAGATACCCTTGTGGGGTAAAATTA
1 AATTACAGAAATACCCCTGTAGGGTAGAATTA
73484646 CCATTTTGCC
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
80 2 0.02
81 91 0.95
82 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.25
Consensus pattern (82 bp):
AATTACAGAAATACCCCTGTAGGGTAGAATTATCCGAAATACCCCTATAGGGTAGAAATACCGAA
ATACCCTTATAGGACAG
Found at i:73484926 original size:27 final size:28
Alignment explanation
Indices: 73484847--73484927 Score: 80
Period size: 27 Copynumber: 3.0 Consensus size: 28
73484837 GGAGGAAGCG
* * *
73484847 TTCTGGTGGCTATGCCACAAATATC--TA
1 TTCTGGTGACTCTTCCAC-AATATCTGTA
*
73484874 TTCTGGTGGCTCTTCCACAATATCTGTA
1 TTCTGGTGACTCTTCCACAATATCTGTA
73484902 TT-TGGTGACTCTGT-CACAATATCTGT
1 TTCTGGTGACTCT-TCCACAATATCTGT
73484928 TGACCGATCG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 6 0.12
27 37 0.77
28 5 0.10
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCTGGTGACTCTTCCACAATATCTGTA
Found at i:73485048 original size:22 final size:22
Alignment explanation
Indices: 73485016--73485074 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
73485006 CCCGTTATTA
*
73485016 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
73485038 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
73485060 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
73485075 ATGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:73485237 original size:27 final size:25
Alignment explanation
Indices: 73485207--73485280 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
73485197 TAGGTGGGTT
*
73485207 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
73485234 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
73485261 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
73485281 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:73485407 original size:6 final size:6
Alignment explanation
Indices: 73485398--73485503 Score: 119
Period size: 6 Copynumber: 17.5 Consensus size: 6
73485388 TTGCATTCAC
* *
73485398 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
73485447 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
73485495 ATTCTG ATT
1 ATTCTG ATT
73485504 ATCATTTTGG
Statistics
Matches: 85, Mismatches: 8, Indels: 14
0.79 0.07 0.13
Matches are distributed among these distances:
5 5 0.06
6 74 0.87
7 5 0.06
8 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:73485462 original size:30 final size:30
Alignment explanation
Indices: 73485398--73485503 Score: 151
Period size: 30 Copynumber: 3.5 Consensus size: 30
73485388 TTGCATTCAC
* *
73485398 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
73485429 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
**
73485459 ATTCTGATTCTGATTCTGATT-CTGTTACTG
1 ATTCTGATTCTGATTCTG-TTACTAATACTG
73485489 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
73485504 ATCATTTTGG
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
30 47 0.67
31 23 0.33
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:73489289 original size:43 final size:41
Alignment explanation
Indices: 73489141--73489291 Score: 144
Period size: 42 Copynumber: 3.5 Consensus size: 41
73489131 TAGGATTCTG
* *
73489141 GTATGTGATTACATGTAAGACCAC-GCCTGGGACATTGGCATC
1 GTATTTGATTACATGTAAGACC-CTGTCTGGGACA-TGGCATC
* * * *
73489183 G-ATTTGAAATTTACATGTAAGACCATTTTTGGGACATCGACATC
1 GTATTTG--A-TTACATGTAAGACCCTGTCTGGGACAT-GGCATC
* *
73489227 GTATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GTATTTGATTACATGTAAGACCCTGTCTGGGACA-TGGCATC
73489269 GATATTTGATTACATGTAAGACC
1 G-TATTTGATTACATGTAAGACC
73489292 ACATCTGAGA
Statistics
Matches: 87, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
41 4 0.05
42 28 0.32
43 23 0.26
44 27 0.31
45 5 0.06
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (41 bp):
GTATTTGATTACATGTAAGACCCTGTCTGGGACATGGCATC
Found at i:73489309 original size:43 final size:42
Alignment explanation
Indices: 73489141--73489310 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 42
73489131 TAGGATTCTG
* *
73489141 GTATGTGATTACATGTAAGACCACGCCTGGGACATTGGCATC
1 GTATTTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
** * * *
73489183 G-ATTTGAAATTTACATGTAAGACCATTTTTGGGACATCGACATC
1 GTATTTG--A-TTACATGTAAGACCACGTCTGGGACATTGGCATC
* * *
73489227 GTATTTGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATC
1 GTATTTGATTACATGTAAGACCAC-GTCTGGGACATTGGCATC
* *
73489269 GATATTTGATTACATGTAAGACCACATCTGAGACATTGGCAT
1 G-TATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
73489311 TGTACTAGTT
Statistics
Matches: 101, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
41 4 0.04
42 27 0.27
43 35 0.35
44 30 0.30
45 5 0.05
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (42 bp):
GTATTTGATTACATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:73496855 original size:43 final size:42
Alignment explanation
Indices: 73496807--73496971 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 42
73496797 TTTCGATATG
* *
73496807 TGATTTCGTGTAAGACCACATCTGGGACATTGGCATCGATTT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATTT
* * * *
73496849 GAGATTTACATGTAAGATCATGTCTGGGACATTAGCATCG-TATT
1 -TGATTT-CATGTAAGACCACGTCTGGGACATTGGCATCGAT-TT
* * * *
73496893 TGATTTCGTATAAGACC-CTGTCTGGGACAATGTCATCGATATT
1 TGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TT
* * *
73496936 TGATTACATGTAAGGCCACGTCTGGGACGTTGGCAT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
73496972 TGTACGAGTT
Statistics
Matches: 96, Mismatches: 21, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
42 24 0.25
43 42 0.44
44 30 0.31
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATTT
Found at i:73496907 original size:86 final size:85
Alignment explanation
Indices: 73496807--73496963 Score: 201
Period size: 86 Copynumber: 1.8 Consensus size: 85
73496797 TTTCGATATG
* * * *
73496807 TGATTTCGTGTAAGACCAC-ATCTGGGACATTGGCATCGAT-TTGAGATTTACATGTAAGATCAT
1 TGATTTCGTATAAGACC-CTATCTGGGACAATGGCATCGATATT-AGA-TTACATGTAAGACCAC
73496870 GTCTGGGACATTAGCATCGTATT
63 GTCTGGGACATTAGCATCGTATT
* * * *
73496893 TGATTTCGTATAAGACCCTGTCTGGGACAATGTCATCGATATTTGATTACATGTAAGGCCACGTC
1 TGATTTCGTATAAGACCCTATCTGGGACAATGGCATCGATATTAGATTACATGTAAGACCACGTC
73496958 TGGGAC
66 TGGGAC
73496964 GTTGGCATTG
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
85 23 0.38
86 36 0.59
87 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (85 bp):
TGATTTCGTATAAGACCCTATCTGGGACAATGGCATCGATATTAGATTACATGTAAGACCACGTC
TGGGACATTAGCATCGTATT
Found at i:73503382 original size:12 final size:12
Alignment explanation
Indices: 73503365--73503399 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
73503355 ATACCCAGGC
*
73503365 CATTACTATGCT
1 CATTACCATGCT
73503377 CATTACCATGCT
1 CATTACCATGCT
73503389 -ATTACCATGCT
1 CATTACCATGCT
73503400 AATATCACGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.37
Consensus pattern (12 bp):
CATTACCATGCT
Found at i:73520479 original size:44 final size:43
Alignment explanation
Indices: 73520417--73520574 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
73520407 GACATTAATC
* * *
73520417 TGAGATATCGTGTAAGACCCTCTCTGGGACATAGGCCTCGATT
1 TGAGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCGATT
* *
73520460 TGAGATTTACGTGTAAGACCATGTCTGGGACATAGGCATTGTATT
1 TGAGATTT-CGTGTAAGACCCTGTCTGGGACATAGGCATCG-ATT
* * *
73520505 T--GATTTCGTGTAAGACCCTGTCTGAGACAGAGGCATCGATAC
1 TGAGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCGAT-T
* *
73520547 TGA-ATTACATGTAAGACCAC-GTCTGGGA
1 TGAGATTTCGTGTAAGACC-CTGTCTGGGA
73520575 TGTCGGCATT
Statistics
Matches: 96, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 32 0.33
44 29 0.30
45 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCGATT
Found at i:73520527 original size:42 final size:42
Alignment explanation
Indices: 73520419--73520544 Score: 155
Period size: 42 Copynumber: 3.0 Consensus size: 42
73520409 CATTAATCTG
* * *
73520419 AGATATCGTGTAAGACCCTCTCTGGGACATAGGCCTCGATTT
1 AGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCGATTT
* *
73520461 GAGATTTACGTGTAAGACCATGTCTGGGACATAGGCATTGTATTT
1 -AGATTT-CGTGTAAGACCCTGTCTGGGACATAGGCATCG-ATTT
* *
73520506 -GATTTCGTGTAAGACCCTGTCTGAGACAGAGGCATCGAT
1 AGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCGAT
73520545 ACTGAATTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.03
42 28 0.39
43 10 0.14
44 28 0.39
45 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCGATTT
Found at i:73523221 original size:70 final size:70
Alignment explanation
Indices: 73523105--73523242 Score: 267
Period size: 70 Copynumber: 2.0 Consensus size: 70
73523095 GTGGTCAAAA
*
73523105 AGCTACTAGGGATACTGTTGTTAGATCTAAGGCCAGAGCACTTGTCAAAGCCTATGCTATCTGAG
1 AGCTACTAGGGATACTGTTGTTAGATCTAAGGCCAGAGCACCTGTCAAAGCCTATGCTATCTGAG
73523170 CTTAG
66 CTTAG
73523175 AGCTACTAGGGATACTGTTGTTAGATCTAAGGCCAGAGCACCTGTCAAAGCCTATGCTATCTGAG
1 AGCTACTAGGGATACTGTTGTTAGATCTAAGGCCAGAGCACCTGTCAAAGCCTATGCTATCTGAG
73523240 CTT
66 CTT
73523243 GTGAGGAAGC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (70 bp):
AGCTACTAGGGATACTGTTGTTAGATCTAAGGCCAGAGCACCTGTCAAAGCCTATGCTATCTGAG
CTTAG
Found at i:73527574 original size:30 final size:30
Alignment explanation
Indices: 73527538--73527597 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
73527528 ACTTAGATCG
73527538 AGGGAAGTCCAAAATAGTTGAATAGTCGAC
1 AGGGAAGTCCAAAATAGTTGAATAGTCGAC
73527568 AGGGAAGTCCAAAATAGTTGAATAGTCGAC
1 AGGGAAGTCCAAAATAGTTGAATAGTCGAC
73527598 TTTTTTCCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (30 bp):
AGGGAAGTCCAAAATAGTTGAATAGTCGAC
Found at i:73528106 original size:35 final size:35
Alignment explanation
Indices: 73528060--73528130 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
73528050 ACAGGTACGT
73528060 TTGTATCGTACTAAATTTCTAAATATGAAAGACTC
1 TTGTATCGTACTAAATTTCTAAATATGAAAGACTC
73528095 TTGTATCGTACTAAATTTCTAAATATGAAAGACTC
1 TTGTATCGTACTAAATTTCTAAATATGAAAGACTC
73528130 T
1 T
73528131 GTTTCTGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TTGTATCGTACTAAATTTCTAAATATGAAAGACTC
Found at i:73528353 original size:47 final size:47
Alignment explanation
Indices: 73528284--73528426 Score: 268
Period size: 47 Copynumber: 3.0 Consensus size: 47
73528274 TGATTTAATA
* *
73528284 GTTAAACCAATTGTATTTGGCTTACTAAGCTCATTGTAGCTTACTCT
1 GTTAAATCAATTGTATTTGGCTTACTAAGCTCTTTGTAGCTTACTCT
73528331 GTTAAATCAATTGTATTTGGCTTACTAAGCTCTTTGTAGCTTACTCT
1 GTTAAATCAATTGTATTTGGCTTACTAAGCTCTTTGTAGCTTACTCT
73528378 GTTAAATCAATTGTATTTGGCTTACTAAGCTCTTTGTAGCTTACTCT
1 GTTAAATCAATTGTATTTGGCTTACTAAGCTCTTTGTAGCTTACTCT
73528425 GT
1 GT
73528427 GTGATTCCTA
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.43
Consensus pattern (47 bp):
GTTAAATCAATTGTATTTGGCTTACTAAGCTCTTTGTAGCTTACTCT
Found at i:73530100 original size:48 final size:48
Alignment explanation
Indices: 73530044--73530315 Score: 157
Period size: 48 Copynumber: 5.7 Consensus size: 48
73530034 AGGGTAAATT
* *
73530044 GCTGATGCCATGTCCCAGACATGGTCTTACACTGAC-C-CA-CATGTC
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATAATGTC
* *
73530089 GAGGCTGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAATGTC
1 ---GCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATAATGTC
* * * * * **
73530140 GTTGTTGCCATGTCCCAAACATGGTCTTACACT-AGCGCACCTAACAAT-
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCTCATAA-TGTC
*** * * ** *
73530188 GCTGATGCCATGTCCTGGACATGGTTTTACACT-AGCTCTCGTAACATT
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCTCATAATGTC
* * * * *
73530236 GCTGATTCCATGTTCCAAA-ATGGTCTTATACTGGCTCTTATATCATG--
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATA--ATGTC
* * * *
73530283 GCCGATGTCATGTCTCAGACATGGTCTTACACT
1 GCTGATGCCATGTCCCAAACATGGTCTTACACT
73530316 AGCAGACATG
Statistics
Matches: 172, Mismatches: 42, Indels: 20
0.74 0.18 0.09
Matches are distributed among these distances:
47 32 0.19
48 130 0.76
49 3 0.02
50 2 0.01
51 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATAATGTC
Found at i:73530247 original size:96 final size:95
Alignment explanation
Indices: 73530037--73530318 Score: 250
Period size: 96 Copynumber: 3.0 Consensus size: 95
73530027 ACACAAGAGG
* * ** *
73530037 GTAAATTGCTGATGCCATGTCCCAGACATGGTCTTACACTGACCCACATGTCGAGGCTGATGCCA
1 GTAAATTGCTGATTCCATGTCCCAAACATGGTCTTACACTGACCCACATAACAAGGCTGATGCCA
*
73530102 TGTCCTAAACATGGTCTTACACTGGCTCTC
66 TGTCCTAAACATGGTCTTACACTAGCTCTC
* * * * *
73530132 AT-AATGTCGTTG-TTGCCATGTCCCAAACATGGTCTTACACT-AGCGCACCTAACAATGCTGAT
1 GTAAAT-T-GCTGATT-CCATGTCCCAAACATGGTCTTACACTGA-CCCACATAACAAGGCTGAT
** *
73530194 GCCATGTCCTGGACATGGTTTTACACTAGCTCTC
62 GCCATGTCCTAAACATGGTCTTACACTAGCTCTC
* * * * ** * * * *
73530228 GTAACATTGCTGATTCCATGTTCCAAA-ATGGTCTTATACTGGCTCTTATATCATGGCCGATGTC
1 GTAA-ATTGCTGATTCCATGTCCCAAACATGGTCTTACACTGACCCACATAACAAGGCTGATGCC
*
73530292 ATGT-CTCAGACATGGTCTTACACTAGC
65 ATGTCCT-AAACATGGTCTTACACTAGC
73530319 AGACATGTCA
Statistics
Matches: 148, Mismatches: 30, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
94 5 0.03
95 51 0.34
96 86 0.58
97 4 0.03
98 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (95 bp):
GTAAATTGCTGATTCCATGTCCCAAACATGGTCTTACACTGACCCACATAACAAGGCTGATGCCA
TGTCCTAAACATGGTCTTACACTAGCTCTC
Found at i:73533168 original size:30 final size:31
Alignment explanation
Indices: 73533087--73533170 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 31
73533077 TTCAGTCTCG
73533087 ACATAT-ACTGGGCTGAAGCCTTTTCATAAA
1 ACATATCACTGGGCTGAAGCCTTTTCATAAA
*
73533117 ACATATCACTGGGCCGAAGCCTTTTCATAAA
1 ACATATCACTGGGCTGAAGCCTTTTCATAAA
*
73533148 TCATATCACT-GGCTGAAGCCTTT
1 ACATATCACTGGGCTGAAGCCTTT
73533171 ACTGTAAGCG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
30 18 0.36
31 32 0.64
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (31 bp):
ACATATCACTGGGCTGAAGCCTTTTCATAAA
Found at i:73533404 original size:24 final size:24
Alignment explanation
Indices: 73533377--73533434 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
73533367 CTGGAGGCCT
73533377 AGCCTCTTTTAATAAA-TGGGGCAA
1 AGCC-CTTTTAATAAATTGGGGCAA
*
73533401 AGCCCTTTTTGATAAATTGGGGCAA
1 AGCCC-TTTTAATAAATTGGGGCAA
73533426 AGCCCTTTT
1 AGCCCTTTT
73533435 CGGTAAACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 1 0.03
24 17 0.55
25 13 0.42
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (24 bp):
AGCCCTTTTAATAAATTGGGGCAA
Found at i:73533427 original size:25 final size:24
Alignment explanation
Indices: 73533383--73533459 Score: 91
Period size: 25 Copynumber: 3.1 Consensus size: 24
73533373 GCCTAGCCTC
*
73533383 TTTTAATAAATGGGGCAAAGCCCT
1 TTTTGATAAATGGGGCAAAGCCCT
73533407 TTTTGATAAATTGGGGCAAAGCCCT
1 TTTTGATAAA-TGGGGCAAAGCCCT
* * **
73533432 TTTCGGTAAACTGGGGCATGGCCCT
1 TTTTGATAAA-TGGGGCAAAGCCCT
73533457 TTT
1 TTT
73533460 AGCACTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 9 0.20
25 37 0.80
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (24 bp):
TTTTGATAAATGGGGCAAAGCCCT
Found at i:73533927 original size:17 final size:18
Alignment explanation
Indices: 73533905--73533951 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
73533895 TTTACCCAAA
73533905 TGGGCCCGA-AAGCCCAT
1 TGGGCCCGATAAGCCCAT
*
73533922 TGGGCCCGATTCCAGCCCAT
1 TGGGCCCGA-T-AAGCCCAT
73533942 TGGGCCCGAT
1 TGGGCCCGAT
73533952 TCCAGCCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 9 0.35
19 1 0.04
20 16 0.62
ACGTcount: A:0.17, C:0.36, G:0.30, T:0.17
Consensus pattern (18 bp):
TGGGCCCGATAAGCCCAT
Found at i:73533940 original size:20 final size:20
Alignment explanation
Indices: 73533915--73533969 Score: 101
Period size: 20 Copynumber: 2.7 Consensus size: 20
73533905 TGGGCCCGAA
73533915 AGCCCATTGGGCCCGATTCC
1 AGCCCATTGGGCCCGATTCC
73533935 AGCCCATTGGGCCCGATTCC
1 AGCCCATTGGGCCCGATTCC
73533955 AGCCCATTGAGGCCC
1 AGCCCATTG-GGCCC
73533970 AACTTACCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 29 0.85
21 5 0.15
ACGTcount: A:0.16, C:0.40, G:0.25, T:0.18
Consensus pattern (20 bp):
AGCCCATTGGGCCCGATTCC
Found at i:73534322 original size:27 final size:26
Alignment explanation
Indices: 73534288--73534365 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
73534278 GGGCATATTC
73534288 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
73534315 GTCATTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* * *
73534342 ATCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-CAGGGGTATT
73534366 TTAGTCATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
26 5 0.11
27 36 0.82
28 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:73534608 original size:81 final size:81
Alignment explanation
Indices: 73534470--73534625 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
73534460 GAAAGTCAAG
** * * * ***
73534470 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTTCAAT
73534535 AATTTCACAAACTAGT
66 AATTTCACAAACTAGT
**
73534551 GGTATTT-TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACCTTATAG-GGGTATTTCA
1 GGTATTTCT-GTAATTTTACAAACTAGGGGTATTTTGGTAATTCTA-CAAATAGAGGGTATTTCA
73534614 ATAATTTCACAA
64 ATAATTTCACAA
73534626 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.02
81 58 0.92
82 4 0.06
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAATAGAGGGTATTTCAAT
AATTTCACAAACTAGT
Found at i:73534611 original size:27 final size:27
Alignment explanation
Indices: 73534386--73534592 Score: 166
Period size: 27 Copynumber: 7.6 Consensus size: 27
73534376 CATCCTACAA
* * * * *
73534386 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* ** * *
73534413 GGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* ** * * *
73534440 TGGTATTTTTATAATTTTTAGAAAGTCAA
1 GGGTATTTTGGTAA-TTTTACAAACT-AG
** *
73534469 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
73534496 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
73534522 AGGGTATTTTGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
73534550 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
73534577 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
73534593 CTACCTTATA
Statistics
Matches: 147, Mismatches: 27, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 114 0.78
28 17 0.12
29 12 0.08
30 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:73539700 original size:48 final size:48
Alignment explanation
Indices: 73539646--73539966 Score: 283
Period size: 48 Copynumber: 6.7 Consensus size: 48
73539636 AGGGCAAATT
* * * *
73539646 GCCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
* * * * * *
73539694 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
* * * *
73539742 GCCGATGCCATGTACAAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAG
* * * * * * *
73539790 GCCGTTGTCATGTCCTAGACATGTTCTTACACTAGTGCAC-C-TAACAACG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCTCATATCGA-G
* * * *
73539839 G-CGATGCCATGTCCCGGACATGGTCTTACACTGGATCTCATAAC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGA-G
* * * * *
73539886 GCCGATGCCATGTTCCAAACATAGTCTTATACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
*
73539934 GCCGACGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
73539967 AGCACACATA
Statistics
Matches: 212, Mismatches: 52, Indels: 18
0.75 0.18 0.06
Matches are distributed among these distances:
46 2 0.01
47 5 0.02
48 197 0.93
49 5 0.02
50 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAG
Found at i:73539924 original size:144 final size:144
Alignment explanation
Indices: 73539696--73539968 Score: 377
Period size: 144 Copynumber: 1.9 Consensus size: 144
73539686 ATGTCGAGGC
* * * **
73539696 CGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTCAATGCCGATGCCATGTACAAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCATAACAATGCCGATGCCATGTACAAAA
* ** * * *
73539761 CATGGTCTTACACTGGCTCTCATAAT-GTGGCCGTTGTCATGTCCTAGACATGTTCTTACACTAG
66 CATAGTCTTACACTGGCTCTCAT-ATCGTGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
73539825 TGCACCTAACAACGG
130 TGCACCTAACAACGG
* * * * *
73539840 CGATGCCATGTCCCGGACATGGTCTTACACTGGATCTCATAACATTGCCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCATAACAATGCCGATGCCATGTACAAAA
*
73539905 CATAGTCTTATACTGGCTCTCATATCGTGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
66 CATAGTCTTACACTGGCTCTCATATCGTGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
73539969 CACACATATC
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
143 2 0.02
144 109 0.98
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (144 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCATAACAATGCCGATGCCATGTACAAAA
CATAGTCTTACACTGGCTCTCATATCGTGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGT
GCACCTAACAACGG
Found at i:73544350 original size:40 final size:40
Alignment explanation
Indices: 73544278--73544460 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
73544268 GCTACTCGTT
* * *
73544278 CAAATGCCTTCGGGACATAGCCTG-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATT-TAGTAACTCGCA
*
73544318 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
* * *
73544358 CCAATGCCTTCAGG-CTTAGCCCAGAA-TTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTTAGTAACTCGCA
* * * * * *
73544397 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGAATTTAGTAAC-TCGCA
73544438 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
73544461 GACATCATTC
Statistics
Matches: 119, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 73 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTCGCA
Found at i:73544446 original size:79 final size:80
Alignment explanation
Indices: 73544306--73544459 Score: 179
Period size: 79 Copynumber: 1.9 Consensus size: 80
73544296 AGCCTGGTTA
* * *
73544306 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCAG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACCAAAGCCTTCAG
73544371 G-CTTAGCCCAGAAT
66 GACTTAGCCCAGAAT
* ** * * *
73544385 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGAATATAGTAAC-TAGCACCAAAGCCTTC
*
73544448 GGGACTTAGCCC
64 AGGACTTAGCCC
73544460 GGACATCATT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
78 3 0.05
79 47 0.76
80 12 0.19
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACCAAAGCCTTCAG
GACTTAGCCCAGAAT
Found at i:73545943 original size:19 final size:19
Alignment explanation
Indices: 73545919--73545964 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
73545909 ATTTTATTTT
73545919 TCCTAACATACATCACTAA
1 TCCTAACATACATCACTAA
73545938 TCCTAACATACATCACTAA
1 TCCTAACATACATCACTAA
73545957 -CCTAACAT
1 TCCTAACAT
73545965 GTTTGTGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.41, C:0.33, G:0.00, T:0.26
Consensus pattern (19 bp):
TCCTAACATACATCACTAA
Found at i:73548934 original size:43 final size:43
Alignment explanation
Indices: 73548877--73548973 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
73548867 TCTTACATGT
73548877 AATCACATATCGATG-CCACTGTCCTAGACAGGGTCATACACG-
1 AATCACATATCGATGTCCA-TGTCCTAGACAGGGTCATACACGC
* * *
73548919 AATCACATATACGATGTCGATGTCCTAGACATGGTCTTACACGC
1 AATCACATAT-CGATGTCCATGTCCTAGACAGGGTCATACACGC
73548963 AATCACATATC
1 AATCACATATC
73548974 ATAAATCCTA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
42 10 0.20
43 27 0.55
44 12 0.24
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
AATCACATATCGATGTCCATGTCCTAGACAGGGTCATACACGC
Found at i:73551486 original size:27 final size:26
Alignment explanation
Indices: 73551431--73551484 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
73551421 CATTAAACCC
* **
73551431 TTAGGGGTATTTCGGTCTTTTTTCCT
1 TTAGGGGCATTTCGGTAATTTTTCCT
73551457 TTAGGGGCATTTCGGTAATTTTTCCT
1 TTAGGGGCATTTCGGTAATTTTTCCT
73551483 TT
1 TT
73551485 TATTACGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.11, C:0.15, G:0.22, T:0.52
Consensus pattern (26 bp):
TTAGGGGCATTTCGGTAATTTTTCCT
Found at i:73551825 original size:29 final size:29
Alignment explanation
Indices: 73551767--73551853 Score: 140
Period size: 29 Copynumber: 3.0 Consensus size: 29
73551757 ATACCTGTAG
*
73551767 ATGGCCCACTAGGCCC-AATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
73551795 ATGGCCCATTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* *
73551824 ATGGCCCATCAGGCCCAATTCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
73551853 A
1 A
73551854 GTCATCCTCA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 15 0.27
29 40 0.73
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:73565096 original size:24 final size:23
Alignment explanation
Indices: 73565065--73565112 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
73565055 TTTCTGAGTC
*
73565065 ATCAAATAATTCA-GACATTTTTT
1 ATCAAATAA-ACATGACATTTTTT
73565088 ATCAGAATAAACATGACATTTTTT
1 ATCA-AATAAACATGACATTTTTT
73565112 A
1 A
73565113 CCGAACAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (23 bp):
ATCAAATAAACATGACATTTTTT
Found at i:73570203 original size:43 final size:43
Alignment explanation
Indices: 73570156--73570272 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
73570146 AATGCCAACG
* *
73570156 TCCCAGGCGTGGTCTTACATGTAATCACATAT-CGATGCC-ACTA
1 TCCCAGACGTGGTCTTACATG-AATCACATATACGATACCGA-TA
* * *
73570199 TCCCAAACAG-GGTCTTACACGAATCACATATACGATACCGATG
1 TCCCAGAC-GTGGTCTTACATGAATCACATATACGATACCGATA
*
73570242 TCCCAGACATGGTCTTACATGCAATCACATA
1 TCCCAGACGTGGTCTTACATG-AATCACATA
73570273 CCGTAAATCC
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
42 10 0.16
43 40 0.66
44 11 0.18
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACATGAATCACATATACGATACCGATA
Found at i:73574174 original size:40 final size:40
Alignment explanation
Indices: 73574145--73574445 Score: 430
Period size: 40 Copynumber: 7.5 Consensus size: 40
73574135 ATGGTCGCTA
73574145 GCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTC
73574185 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
* * * * * ** *
73574225 GCAC-AAGGCCGTCGGGTCTTAGCTCGG-ATATGGTCGCTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTC
73574264 GCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTC
73574304 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
73574344 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
* * * *
73574384 GCACAAATGCATTCGGGACTTAGCCCGGAATTAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
*
73574424 GCACAAATGTCTTCGGGACTTA
1 GCACAAATGCCTTCGGGACTTA
73574446 ATCCCGTTAG
Statistics
Matches: 235, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
38 2 0.01
39 28 0.12
40 201 0.86
41 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
Found at i:73574301 original size:119 final size:119
Alignment explanation
Indices: 73574102--73574445 Score: 530
Period size: 119 Copynumber: 2.9 Consensus size: 119
73574092 GGATATAACC
73574102 ACTCGCACAAGGCCGTCGGGTCTTAGCTCGGATATGGTCGCTAGCACAAATGCCTTCGGGACTTA
1 ACTCGCACAAGGCCGTCGGGTCTTAGCTCGGATATGGTCGCTAGCACAAATGCCTTCGGGACTTA
73574167 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
73574221 ACTCGCACAAGGCCGTCGGGTCTTAGCTCGGATATGGTCGCTAGCACAAATGCCTTCGGGACTTA
1 ACTCGCACAAGGCCGTCGGGTCTTAGCTCGGATATGGTCGCTAGCACAAATGCCTTCGGGACTTA
73574286 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
66 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * * * * ** * *
73574340 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCATTCGGGACT
1 ACTCGCAC-AAGGCCGTCGGGTCTTAGCTCGGATA-TGGTCGCTAGCACAAATGCCTTCGGGACT
* * * *
73574404 TAGCCCGGA-ATTAATCACTAGCACAAATGTCTTCGGGACTTA
64 TAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTA
73574446 ATCCCGTTAG
Statistics
Matches: 209, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
119 129 0.62
120 80 0.38
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (119 bp):
ACTCGCACAAGGCCGTCGGGTCTTAGCTCGGATATGGTCGCTAGCACAAATGCCTTCGGGACTTA
GCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:73576578 original size:18 final size:18
Alignment explanation
Indices: 73576555--73576589 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
73576545 TAAAAATAGT
73576555 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
73576573 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
73576590 GGCACATCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:73581194 original size:40 final size:40
Alignment explanation
Indices: 73581085--73581220 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 40
73581075 CGATTATTTG
* * * * *
73581085 TGGCACTTAGTGTGCGGTACAACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
* * * *
73581125 TGGCACTGAGTGTGCGATTCGACAAAGCTTCGACTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
* * *
73581165 TGGCACTTAGTGTGTGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
* * *
73581205 CGACACTTTGTGTGTG
1 TGGCACTTAGTGTGTG
73581221 TGATATTGAG
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
Found at i:73600476 original size:27 final size:26
Alignment explanation
Indices: 73600456--73600520 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
73600446 ACCCTAGTTA
73600456 GGTAAAATAACCATAATACCCTTGTAG
1 GGTAAAATAACCATAATACCC-TGTAG
* ** *
73600483 GGTAAAATGACTGTAATACCCCTGTAT
1 GGTAAAATAACCATAATA-CCCTGTAG
73600510 GGTAAAATAAC
1 GGTAAAATAAC
73600521 GATTATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (26 bp):
GGTAAAATAACCATAATACCCTGTAG
Found at i:73610491 original size:50 final size:50
Alignment explanation
Indices: 73610432--73610546 Score: 151
Period size: 50 Copynumber: 2.3 Consensus size: 50
73610422 ACAAACCACA
*
73610432 CTCAGCTCGTATGAGCTTACCAATTTGCAACTCGTGAGAGCTTACCGATT
1 CTCAGCTCGTATGAGCTTACCAATTTGCAACTCGTGAGAGCATACCGATT
* *** * *
73610482 CTCAGCTCGTATAAGCTTATTGATTTGCAGCTCGTGAGAGCATACTGATT
1 CTCAGCTCGTATGAGCTTACCAATTTGCAACTCGTGAGAGCATACCGATT
73610532 CAT-AGCTCGTATGAG
1 C-TCAGCTCGTATGAG
73610547 TGTACAGGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 55 0.98
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (50 bp):
CTCAGCTCGTATGAGCTTACCAATTTGCAACTCGTGAGAGCATACCGATT
Found at i:73610530 original size:25 final size:25
Alignment explanation
Indices: 73610434--73610531 Score: 85
Period size: 25 Copynumber: 3.9 Consensus size: 25
73610424 AAACCACACT
**
73610434 CAGCTCGT-ATGAGCTTACCAATTTG
1 CAGCTCGTGA-GAGCTTACTGATTTG
* *
73610459 CAACTCGTGAGAGCTTACCGATTCT-
1 CAGCTCGTGAGAGCTTACTGATT-TG
* *
73610484 CAGCTCGT-ATAAGCTTATTGATTTG
1 CAGCTCGTGA-GAGCTTACTGATTTG
*
73610509 CAGCTCGTGAGAGCATACTGATT
1 CAGCTCGTGAGAGCTTACTGATT
73610532 CATAGCTCGT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
24 2 0.03
25 54 0.92
26 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (25 bp):
CAGCTCGTGAGAGCTTACTGATTTG
Found at i:73619197 original size:15 final size:16
Alignment explanation
Indices: 73619177--73619206 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73619167 TGGTGCCTTA
73619177 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
73619192 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
73619207 ATCATTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:73621189 original size:10 final size:10
Alignment explanation
Indices: 73621155--73621189 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
73621145 CCTCTATGTC
*
73621155 TTTTTCCTTT
1 TTTTTCTTTT
*
73621165 TTTTCCTTTT
1 TTTTTCTTTT
73621175 TTTTTCTTTT
1 TTTTTCTTTT
73621185 TTTTT
1 TTTTT
73621190 TTGGCATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:73632676 original size:43 final size:43
Alignment explanation
Indices: 73632515--73632677 Score: 120
Period size: 43 Copynumber: 3.8 Consensus size: 43
73632505 CATAGGATTC
* * * * *
73632515 CGATATGTGA-TTTCGTGTAAGACCACATCAGGGACTTTGGCA-
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGAC-ATGGCAT
* * * **
73632557 CTGATTTGTGATTTACATGTAAGACCATGTCTGGGACATCAACAT
1 C-GATATGTGAGTTACATGTAAGACCACGTCTGGGACAT-GGCAT
* * * **
73632602 CG-TTTATGAGTT-CGTGTAAGACCTTGTCTGGGACAGTGGCAT
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGACA-TGGCAT
73632644 CGATATGTGA-TTACATGTAAGACCACGTCTGGGA
1 CGATATGTGAGTTACATGTAAGACCACGTCTGGGA
73632678 TGTTGGCATT
Statistics
Matches: 94, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
42 29 0.31
43 41 0.44
44 23 0.24
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGATATGTGAGTTACATGTAAGACCACGTCTGGGACATGGCAT
Found at i:73634076 original size:37 final size:37
Alignment explanation
Indices: 73634017--73634118 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
73634007 AGCTCAGACG
* *
73634017 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73634054 AAATCTCCATACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73634091 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
73634119 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:73634411 original size:49 final size:47
Alignment explanation
Indices: 73634237--73635034 Score: 1236
Period size: 47 Copynumber: 16.6 Consensus size: 47
73634227 CCCTTCGAGA
* * * ** * *
73634237 CTTATCACATTTATACACTTTCACATCCATCACGTTAGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73634284 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73634331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73634378 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73634427 CTTATCACATATATACACTTTCACATTCATCATATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73634474 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73634521 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73634568 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73634617 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73634664 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73634713 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73634760 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73634811 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73634860 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73634909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73634956 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73635005 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
73635035 TCAAATATAC
Statistics
Matches: 701, Mismatches: 38, Indels: 24
0.92 0.05 0.03
Matches are distributed among these distances:
47 379 0.54
49 276 0.39
51 46 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73634434 original size:96 final size:96
Alignment explanation
Indices: 73634237--73635034 Score: 1316
Period size: 96 Copynumber: 8.3 Consensus size: 96
73634227 CCCTTCGAGA
* * * ** * * * *
73634237 CTTATCACATTTATACACTTTCACATCCATCACGTTAGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
73634300 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
73634331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
73634396 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
73634427 CTTATCACATATATACACTTTCACATTCATCATATCAGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
73634490 ACTTTCACATTCATCATATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
73634521 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
73634586 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
73634617 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
73634682 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
73634713 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAT
73634778 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
73634811 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
73634876 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
73634909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
73634974 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
73635005 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
73635035 TCAAATATAC
Statistics
Matches: 663, Mismatches: 33, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
94 135 0.20
96 388 0.59
98 94 0.14
100 46 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73636952 original size:56 final size:56
Alignment explanation
Indices: 73636885--73637004 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
73636875 TATTAGTTTA
73636885 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
73636941 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
73636997 TTGCCCAT
1 TTGCCCAT
73637005 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:73641141 original size:27 final size:26
Alignment explanation
Indices: 73641110--73641194 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 26
73641100 TTAGTTTACC
* *
73641110 AAATTACTAAAATACCTTCGACTTGTA
1 AAATTACCAAAATACC-TCGATTTGTA
* * *
73641137 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATA-CCTCGATTTGTA
*
73641164 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATA-CCTCGATTTGTA
73641191 AAAT
1 AAAT
73641195 CACTGAAATA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 45 0.96
28 2 0.04
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCTCGATTTGTA
Found at i:73641249 original size:27 final size:27
Alignment explanation
Indices: 73641211--73641617 Score: 239
Period size: 27 Copynumber: 14.8 Consensus size: 27
73641201 AATAAGATAG
73641211 AATTACCATTTTACCCTCGATTTATAA
1 AATTACCATTTTACCCTCGATTTATAA
** *
73641238 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
* *
73641265 AATTACCATTTTATCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
* *
73641292 AATTACTATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAA
** * *
73641319 AATTACTGTTTTATCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAA
** ** * *
73641346 AATTATTGA-AATACCCT-TAGTTTACAA
1 AATTA-CCATTTTACCCTCGA-TTTATAA
*** *
73641373 AATTACCAAAATACCCTCGA-TCAGTAA
1 AATTACCATTTTACCCTCGATTTA-TAA
*** * *
73641400 AATTACCAAAGTACCCCCGGTTTATAA
1 AATTACCATTTTACCCTCGATTTATAA
* *** *
73641427 AATTACTAAAATACCGTCGATTT-TAA
1 AATTACCATTTTACCCTCGATTTATAA
** ** * * * *
73641453 AATTATTGA-AATGCCTTCGATTTGTAG
1 AATTA-CCATTTTACCCTCGATTTATAA
*
73641480 AATTACCATTTTACCCTCAATTTATAAATTTACAA
1 AATTACCATTTTACCCTCGA-TT-T--A--T--AA
* * *
73641515 AATTACCGTTTTACCCTCAATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
* *
73641542 AATTACCATTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTATAA
* *
73641569 AATTACCATTTCACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAA
*
73641596 AATTACCGTTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
73641618 GTGAAATTAC
Statistics
Matches: 307, Mismatches: 56, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
26 25 0.08
27 250 0.81
28 5 0.02
29 2 0.01
31 1 0.00
33 2 0.01
34 2 0.01
35 20 0.07
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTATAA
Found at i:73641639 original size:27 final size:26
Alignment explanation
Indices: 73641609--73641720 Score: 91
Period size: 27 Copynumber: 4.2 Consensus size: 26
73641599 TACCGTTTTA
* **
73641609 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
73641636 CCCTG-TAGGATAGAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
* * *
73641663 CCCTGGTTTGTAAAACTACTAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
*
73641690 CCCTGACTTGTAAAATTACCGAAATAC
1 CCCTGA-TTGTAAAATTACCAAAATAC
73641717 CCCT
1 CCCT
73641721 ATAGGGTAGA
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
25 1 0.01
26 3 0.04
27 60 0.90
28 2 0.03
29 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:73641733 original size:27 final size:27
Alignment explanation
Indices: 73641622--73642013 Score: 493
Period size: 27 Copynumber: 14.6 Consensus size: 27
73641612 TCGATTGTGA
* *
73641622 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
73641649 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** ** *
73641676 AACTACTAAAATACCCCTG-ACTTGTAA
1 AATTACCGAAATACCCCTGTA-GGGTAG
*
73641703 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73641730 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73641756 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73641783 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73641810 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73641837 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73641864 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73641891 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73641918 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73641945 AAATACCGAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73641972 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73641999 AATTACCGAGATACC
1 AATTACCGAAATACC
73642014 TTGTGAGGTA
Statistics
Matches: 317, Mismatches: 43, Indels: 10
0.86 0.12 0.03
Matches are distributed among these distances:
26 24 0.08
27 290 0.91
28 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:73642471 original size:6 final size:6
Alignment explanation
Indices: 73642433--73642519 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
73642423 TTGCATTCAC
* *
73642433 ATTCTG ATTTTG ATTCTG -TTACCT- ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
73642481 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
73642520 AATATTTCTT
Statistics
Matches: 64, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
5 6 0.09
6 51 0.80
7 6 0.09
8 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:73642498 original size:31 final size:30
Alignment explanation
Indices: 73642433--73642510 Score: 120
Period size: 30 Copynumber: 2.6 Consensus size: 30
73642423 TTGCATTCAC
* *
73642433 ATTCTGATTTTGATTCTGTTACCTATACTG
1 ATTCTGATTCTGATTCTGTCACCTATACTG
*
73642463 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCT-ATACTG
73642494 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
73642511 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 22 0.50
31 22 0.50
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTATACTG
Found at i:73646978 original size:23 final size:23
Alignment explanation
Indices: 73646952--73646998 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
73646942 ATGAAGTGTA
73646952 GAAATCGTCAAATGTTTGATTGC
1 GAAATCGTCAAATGTTTGATTGC
*
73646975 GAAATTGTCAAATGTTTGATTGC
1 GAAATCGTCAAATGTTTGATTGC
73646998 G
1 G
73646999 TCTACAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (23 bp):
GAAATCGTCAAATGTTTGATTGC
Found at i:73660257 original size:26 final size:27
Alignment explanation
Indices: 73660221--73660273 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73660211 TGTCAGCTAG
* *
73660221 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
73660247 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
73660274 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:73661608 original size:48 final size:48
Alignment explanation
Indices: 73661544--73661691 Score: 215
Period size: 48 Copynumber: 3.1 Consensus size: 48
73661534 TTGATGTACA
*
73661544 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
73661592 AGATATATATATGTGGTAAAGTCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
73661640 AGCCATGCATTTGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
73661688 AGAT
1 AGAT
73661692 GTGTATATAT
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:73669178 original size:15 final size:15
Alignment explanation
Indices: 73669158--73669192 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
73669148 GCATTGATAA
73669158 TTTCTCAAAAGATTC
1 TTTCTCAAAAGATTC
* *
73669173 TTTCTCAACAGCTTC
1 TTTCTCAAAAGATTC
73669188 TTTCT
1 TTTCT
73669193 AAGTATGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.26, G:0.06, T:0.46
Consensus pattern (15 bp):
TTTCTCAAAAGATTC
Found at i:73681544 original size:31 final size:31
Alignment explanation
Indices: 73681509--73681572 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
73681499 CCTTTTCATA
73681509 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
73681540 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
73681571 TT
1 TT
73681573 ACTGCAAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:73681854 original size:27 final size:27
Alignment explanation
Indices: 73681799--73681872 Score: 132
Period size: 27 Copynumber: 2.8 Consensus size: 27
73681789 TCTTTTAAAT
73681799 AACTGGGGCATAAGCCC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCGGTA
73681825 AACTGGGGCATAAGCCCTTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCGGTA
*
73681852 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
73681873 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
26 17 0.37
27 29 0.63
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (27 bp):
AACTGGGGCATAAGCCCTTTTTCGGTA
Done.