Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 223 of 332
Found at i:74010895 original size:42 final size:42
Alignment explanation
Indices: 74010836--74010927 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
74010826 TAGTCTCCCC
* ** *
74010836 AAATGGGCTTGCGTACAT-TCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATGTGATATTG
74010878 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
74010920 AAATGGGC
1 AAATGGGC
74010928 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
Found at i:74010986 original size:31 final size:31
Alignment explanation
Indices: 74010951--74011029 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
74010941 CGTTTACAGT
74010951 AAAGGCTTAGGCCCAGTGATATGATTTATGA
1 AAAGGCTTAGGCCCAGTGATATGATTTATGA
* *
74010982 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTAGGCCCAGTGATATGATTTATGA
*
74011013 AAAGGCTTTGGCCCAGT
1 AAAGGCTTAGGCCCAGT
74011030 AACTGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTAGGCCCAGTGATATGATTTATGA
Found at i:74013174 original size:33 final size:33
Alignment explanation
Indices: 74013127--74013205 Score: 151
Period size: 33 Copynumber: 2.4 Consensus size: 33
74013117 AATGTAATGT
74013127 ATGTG-TTTGAATTATATATTTATATACCTTGA
1 ATGTGATTTGAATTATATATTTATATACCTTGA
74013159 ATGTGATTTGAATTATATATTTATATACCTTGA
1 ATGTGATTTGAATTATATATTTATATACCTTGA
74013192 ATGTGATTTGAATT
1 ATGTGATTTGAATT
74013206 GTATGTGAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 5 0.11
33 41 0.89
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (33 bp):
ATGTGATTTGAATTATATATTTATATACCTTGA
Found at i:74014894 original size:18 final size:19
Alignment explanation
Indices: 74014871--74014911 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
74014861 ATGGGCCCAC
*
74014871 AGCCCA-TTGGGCCCATTT
1 AGCCCATTTCGGCCCATTT
*
74014889 AGCCCATTTCGGCCCGTTT
1 AGCCCATTTCGGCCCATTT
74014908 AGCC
1 AGCC
74014912 AATTCACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.15, C:0.37, G:0.22, T:0.27
Consensus pattern (19 bp):
AGCCCATTTCGGCCCATTT
Found at i:74014908 original size:19 final size:18
Alignment explanation
Indices: 74014871--74014916 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
74014861 ATGGGCCCAC
*
74014871 AGCCCATTGGGCCCATTT
1 AGCCCATTCGGCCCATTT
*
74014889 AGCCCATTTCGGCCCGTTT
1 AGCCCA-TTCGGCCCATTT
*
74014908 AGCCAATTC
1 AGCCCATTC
74014917 ACAACCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.17, C:0.35, G:0.20, T:0.28
Consensus pattern (18 bp):
AGCCCATTCGGCCCATTT
Found at i:74019333 original size:28 final size:26
Alignment explanation
Indices: 74019268--74019342 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 26
74019258 CCCAATCTCT
*
74019268 TTCATATGGCCCATTAGGTCCTTTCACA
1 TTCATATGG-CCATTAGG-CCTTTCAAA
* * *
74019296 TTTATGTGGCCATTAGGCCTTAATTAAA
1 TTCATATGGCCATTAGGCCTT--TCAAA
74019324 TTCATATGGCCATTAGGCC
1 TTCATATGGCCATTAGGCC
74019343 CAATCACATT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 4 0.10
27 8 0.21
28 27 0.69
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (26 bp):
TTCATATGGCCATTAGGCCTTTCAAA
Found at i:74021578 original size:11 final size:11
Alignment explanation
Indices: 74021553--74021594 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
74021543 CAACAAAACA
*
74021553 TAAAGAAA-CC
1 TAAAGAAATTC
*
74021563 TAAAGAACTTC
1 TAAAGAAATTC
74021574 TAAAGAAATTC
1 TAAAGAAATTC
74021585 TAAAGAAATT
1 TAAAGAAATT
74021595 GAGTGGAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 7 0.25
11 21 0.75
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.24
Consensus pattern (11 bp):
TAAAGAAATTC
Found at i:74021924 original size:30 final size:30
Alignment explanation
Indices: 74021868--74021925 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74021858 CACGGCCATG
* * *
74021868 ACACACGAGTGTGTGGCCTGCTCGTGTGTC
1 ACACACGAGCGTGTGGACTGCCCGTGTGTC
*
74021898 ACACACGAGCGTGTGGATTGCCCGTGTG
1 ACACACGAGCGTGTGGACTGCCCGTGTG
74021926 GTAGTGCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (30 bp):
ACACACGAGCGTGTGGACTGCCCGTGTGTC
Found at i:74036074 original size:130 final size:130
Alignment explanation
Indices: 74035841--74036101 Score: 522
Period size: 130 Copynumber: 2.0 Consensus size: 130
74035831 AATTTTGAGA
74035841 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
1 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
74035906 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
66 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
74035971 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
1 TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
74036036 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
66 TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
74036101 T
1 T
74036102 ATAATTGAAC
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (130 bp):
TGTGATTGGGAGTGAATTTGACATGAGCATATTTTGCTAATGACATATTGATAAATGTTGAGTTA
TGATACCATGATATTAACTTAATTATCAAGTTGCCGAATGTGCTTATAAGTAAGTGAAGTTATGT
Found at i:74037174 original size:39 final size:39
Alignment explanation
Indices: 74037015--74037166 Score: 268
Period size: 39 Copynumber: 3.9 Consensus size: 39
74037005 ATTCAAGACA
*
74037015 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
74037054 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
74037093 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
74037132 TTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
74037167 TGTGTTGGTA
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:74039901 original size:43 final size:43
Alignment explanation
Indices: 74039741--74039912 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
74039731 CATAGGATTC
* * *
74039741 CGATATGTGATTTCGTGTAAGACCACGTCTAGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * * *
74039784 CGAT-TTGTGATTTACGTGTAAGACTATGTCTGGGACATCGACAT
1 CGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
** **
74039828 CG-TATTTGATTTTGTGTAAGACCTTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGAC-GTTGGCAT
* *
74039870 CGATATTTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
74039913 TATATGAGCT
Statistics
Matches: 102, Mismatches: 21, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
42 29 0.28
43 43 0.42
44 30 0.29
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:74054341 original size:80 final size:79
Alignment explanation
Indices: 74054204--74054428 Score: 256
Period size: 80 Copynumber: 2.8 Consensus size: 79
74054194 TTGAATGCTG
* * * * * *
74054204 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
74054268 TGTGCGAGATA-CAAA
64 TGTGCGAGATATCAAA
* *
74054283 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATT
* * *
74054348 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * * * *
74054364 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
74054429 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
79 39 0.32
80 70 0.57
81 14 0.11
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:74054408 original size:39 final size:39
Alignment explanation
Indices: 74054204--74054426 Score: 225
Period size: 40 Copynumber: 5.6 Consensus size: 39
74054194 TTGAATGCTG
* * * * * *
74054204 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** *
74054244 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * *
74054283 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
74054324 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
74054364 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
74054403 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
74054427 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 39 0.25
40 105 0.68
41 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:74054446 original size:79 final size:80
Alignment explanation
Indices: 74054284--74054461 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
74054274 AGATACAAAT
* * * *
74054284 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
74054349 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
74054364 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
74054428 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
74054443 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
74054462 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:74062268 original size:78 final size:76
Alignment explanation
Indices: 74062121--74062337 Score: 192
Period size: 78 Copynumber: 2.8 Consensus size: 76
74062111 TTGAATGCTG
* * * * *
74062121 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCC-GGATAAGAT-CCGAAGGCATT
1 TCCGGGTTAAG-CCCGAAGGCTTT-TGC-GAGTTAATAAATCCGGGTTAAG-TCCCGAAGGCATT
*
74062184 GTGCGAGATA-CAAA
62 GAGCGAGATATCAAA
*
74062198 TTCCGGGTTAAGCCCCGAAGGCTTTTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 -TCCGGGTTAAG-CCCGAAGGCTTTTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATT-G
* *
74062263 AGCGAGTTATTAAA
63 AGCGAGATATCAAA
* * * * *
74062277 TCCGGGTTAAGTCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTT--GTCCCGAAGGCATT
1 TCCGGGTTAAGCCCGAAGGC-TTTTGCGAGTTAATAAATCCGGG-TTAAGTCCCGAAGGCATT
74062338 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
76 11 0.09
77 42 0.36
78 60 0.51
79 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (76 bp):
TCCGGGTTAAGCCCGAAGGCTTTTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCATTGAGC
GAGATATCAAA
Found at i:74062320 original size:38 final size:38
Alignment explanation
Indices: 74062121--74062337 Score: 183
Period size: 38 Copynumber: 5.6 Consensus size: 38
74062111 TTGAATGCTG
* * * * * *
74062121 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGT-CCGAAGGCATTGTGC-GAGTTACTAAA
* *
74062161 TCC-GGATAAGATCCGAAGGCATTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCGAAGGCATTGTGCGAGTTACTAAA
* * *
74062198 TTCCGGGTTAAGCCCCGAAGGC-TTTTGCGAGTTATTAAA
1 -TCCGGGTTAAG-TCCGAAGGCATTGTGCGAGTTACTAAA
* *
74062237 TCCGGGTTAAGTCCCGAAGGCATTCGAGCGAGTTATTAAA
1 TCCGGGTTAAGT-CCGAAGGCATT-GTGCGAGTTACTAAA
*
74062277 TCCGGGTTAAGTCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTACTAAA
*
74062315 ACCGGGCTT--GTCCCGAAGGCATT
1 TCCGGG-TTAAGT-CCGAAGGCATT
74062338 TGAACGAGGA
Statistics
Matches: 148, Mismatches: 20, Indels: 20
0.79 0.11 0.11
Matches are distributed among these distances:
37 4 0.03
38 63 0.43
39 52 0.35
40 29 0.20
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (38 bp):
TCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:74062357 original size:77 final size:76
Alignment explanation
Indices: 74062199--74062372 Score: 174
Period size: 77 Copynumber: 2.2 Consensus size: 76
74062189 AGATACAAAT
* * * *
74062199 TCCGGGTTAAGCCCCGAAGGCTTTTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGA
1 TCCGGGTTAAG-TCCGAAGGCTTGTGCGAGTTACTAAAACCGGGTT-AGTCCCGAAGGCATTCGA
* * *
74062264 GCGAGTTATTAAA
64 ACGAGTGACTAAA
* *
74062277 TCCGGGTTAAGTCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTT-GTCCCGAAGGCATTTGA
1 TCCGGGTTAAGTCCGAAGGC-TTGTGCGAGTTACTAAAACCGGG-TTAGTCCCGAAGGCATTCGA
*
74062341 ACGAG-GAGCTATA
64 ACGAGTGA-CTAAA
*
74062354 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGT-CCGAAGG
74062373 TACGTGATTT
Statistics
Matches: 81, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
76 8 0.10
77 41 0.51
78 30 0.37
79 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (76 bp):
TCCGGGTTAAGTCCGAAGGCTTGTGCGAGTTACTAAAACCGGGTTAGTCCCGAAGGCATTCGAAC
GAGTGACTAAA
Found at i:74066626 original size:54 final size:53
Alignment explanation
Indices: 74066530--74066710 Score: 181
Period size: 54 Copynumber: 3.3 Consensus size: 53
74066520 TGTTAGAATA
* * *
74066530 TACCACTTTACCCTCCGAGTTTATAGAATTACCGTTTACCCTCAATTTACAAAAT
1 TACCATTTTACCCT-CGA-TTTATAGAATTACCATGTACCCTCAATTTACAAAAT
*
74066585 TACCATTTTACCCTCGATTCTATAGAACTTA-CATGTACCCTCGATTTACAAAAT
1 TACCATTTTACCCTCGATT-TATAGAA-TTACCATGTACCCTCAATTTACAAAAT
* * * *
74066639 TACCATTTTACCCT-GATTTGACAAAAATTACCATTTTGACCTTCAATTTACAAAAT
1 TACCATTTTACCCTCGATTT-A-TAGAATTACCA-TGT-ACCCTCAATTTACAAAAT
*
74066695 TATC--TTTACCCTCGAT
1 TACCATTTTACCCTCGAT
74066711 GTGAAATTAC
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
52 1 0.01
53 10 0.09
54 57 0.53
55 21 0.19
56 19 0.18
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (53 bp):
TACCATTTTACCCTCGATTTATAGAATTACCATGTACCCTCAATTTACAAAAT
Found at i:74066693 original size:28 final size:27
Alignment explanation
Indices: 74066530--74066710 Score: 158
Period size: 27 Copynumber: 6.7 Consensus size: 27
74066520 TGTTAGAATA
* * *
74066530 TACCACTTTACCCTCCGAGTTTATAGAAT
1 TACCATTTTACCCT-CGA-TTTACAAAAT
* *
74066559 TACC-GTTTACCCTCAATTTACAAAAT
1 TACCATTTTACCCTCGATTTACAAAAT
* *
74066585 TACCATTTTACCCTCGATTCTATAGAACT
1 TACCATTTTACCCTCGATT-TACA-AAAT
*
74066614 TA-CA-TGTACCCTCGATTTACAAAAT
1 TACCATTTTACCCTCGATTTACAAAAT
74066639 TACCATTTTACCCT-GATTTGACAAAAAT
1 TACCATTTTACCCTCGATTT-AC-AAAAT
* *
74066667 TACCATTTTGACCTTCAATTTACAAAAT
1 TACCATTTT-ACCCTCGATTTACAAAAT
*
74066695 TATC--TTTACCCTCGAT
1 TACCATTTTACCCTCGAT
74066711 GTGAAATTAC
Statistics
Matches: 126, Mismatches: 17, Indels: 22
0.76 0.10 0.13
Matches are distributed among these distances:
25 12 0.10
26 25 0.20
27 35 0.28
28 35 0.28
29 15 0.12
30 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (27 bp):
TACCATTTTACCCTCGATTTACAAAAT
Found at i:74066847 original size:53 final size:53
Alignment explanation
Indices: 74066740--74066942 Score: 196
Period size: 53 Copynumber: 3.8 Consensus size: 53
74066730 ATGTAGGAAG
** * * *
74066740 AATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGTTGTAA
1 AATTACCAAAATACCACTAGTTTACAAAATTA-CGAAATACCCTCAATTTGTAA
* **
74066792 AATTACCAAAATACCACTGGTTTATGAAATTACGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTAGTTTACAAAATTACGAAATACCCTCAATTTGTAA
* * * * *
74066845 AATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCACTAGTTTACAAAATTAC-GAAATACCC-TCAATTTGT-AA
* * * *
74066901 AATTA-TAAAATACCATTGGTTTACAAAATTATGAAATACCCT
1 AATTACCAAAATACCACTAGTTTACAAAATTACGAAATACCCT
74066943 TGTTTGTAGA
Statistics
Matches: 126, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 24 0.19
53 50 0.40
54 18 0.14
55 27 0.21
56 7 0.06
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (53 bp):
AATTACCAAAATACCACTAGTTTACAAAATTACGAAATACCCTCAATTTGTAA
Found at i:74066859 original size:27 final size:27
Alignment explanation
Indices: 74066740--74066888 Score: 139
Period size: 26 Copynumber: 5.6 Consensus size: 27
74066730 ATGTAGGAAG
*
74066740 AATTACCAAAATACCCT-AGTTTGTAA
1 AATTACCAAAATACCCTCAATTTGTAA
* *
74066766 AATTACCAAAATACCC-CTAGTTGTAA
1 AATTACCAAAATACCCTCAATTTGTAA
** * *
74066792 AATTACCAAAATACCACT-GGTTTATGA
1 AATTACCAAAATACC-CTCAATTTGTAA
*
74066819 AATTA-CGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTCAATTTGTAA
**
74066845 AATTACCAAAATACCC-CTAATTTACAA
1 AATTACCAAAATACCCTC-AATTTGTAA
74066872 AATTA-CAGAAATACCCT
1 AATTACCA-AAATACCCT
74066889 TGACTTTCTA
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
25 2 0.02
26 58 0.59
27 39 0.39
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTGTAA
Found at i:74066911 original size:28 final size:26
Alignment explanation
Indices: 74066865--74066944 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
74066855 ATACCCCTAA
* *
74066865 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTATA-AAATACCCTTG-G
*
74066893 TTT-CTAAAAATTATAAAATACCATTGG
1 TTTAC--AAAATTATAAAATACCCTTGG
*
74066920 TTTACAAAATTATGAAATACCCTTG
1 TTTACAAAATTATAAAATACCCTTG
74066945 TTTGTAGATT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 18 0.41
27 4 0.09
28 14 0.32
29 8 0.18
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (26 bp):
TTTACAAAATTATAAAATACCCTTGG
Found at i:74067867 original size:48 final size:50
Alignment explanation
Indices: 74067811--74067974 Score: 202
Period size: 48 Copynumber: 3.4 Consensus size: 50
74067801 TGAGAAGTGC
74067811 AAAAGGCTTATGCCCCA-TTT-TTGAAAAGGCTTATGCCCCAGTTACCGA
1 AAAAGGCTTATGCCCCAGTTTATTGAAAAGGCTTATGCCCCAGTTACCGA
74067859 AAAAGGCTTATGCCCCAGTTTATTGAAAAAGGCTTATGCCCCAGTTA-CG-
1 AAAAGGCTTATGCCCCAGTTTATTG-AAAAGGCTTATGCCCCAGTTACCGA
* * *
74067908 -AAAGGCTTAAGCCCTAGTTTATTGAAAAGGGC-T-TGCCCTAGTTACC-A
1 AAAAGGCTTATGCCCCAGTTTATTGAAAA-GGCTTATGCCCCAGTTACCGA
*
74067955 AAAAGAGCTT-TGCCGCAGTT
1 AAAAG-GCTTATGCCCCAGTT
74067975 ATTAATAGGC
Statistics
Matches: 102, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
46 10 0.10
47 6 0.06
48 53 0.52
49 7 0.07
50 5 0.05
51 21 0.21
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (50 bp):
AAAAGGCTTATGCCCCAGTTTATTGAAAAGGCTTATGCCCCAGTTACCGA
Found at i:74067893 original size:26 final size:26
Alignment explanation
Indices: 74067811--74067941 Score: 152
Period size: 26 Copynumber: 5.3 Consensus size: 26
74067801 TGAGAAGTGC
74067811 AAAAGGCTTATGCCCCA-TTT-TTG-
1 AAAAGGCTTATGCCCCAGTTTATTGA
**
74067834 AAAAGGCTTATGCCCCAG-TTACCGA
1 AAAAGGCTTATGCCCCAGTTTATTGA
74067859 AAAAGGCTTATGCCCCAGTTTATTGA
1 AAAAGGCTTATGCCCCAGTTTATTGA
*
74067885 AAAAGGCTTATGCCCCAG-TTA-CG-
1 AAAAGGCTTATGCCCCAGTTTATTGA
* *
74067908 -AAAGGCTTAAGCCCTAGTTTATTGA
1 AAAAGGCTTATGCCCCAGTTTATTGA
*
74067933 AAAGGGCTT
1 AAAAGGCTT
74067942 GCCCTAGTTA
Statistics
Matches: 91, Mismatches: 9, Indels: 13
0.81 0.08 0.12
Matches are distributed among these distances:
22 15 0.16
23 22 0.24
24 3 0.03
25 21 0.23
26 30 0.33
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGCTTATGCCCCAGTTTATTGA
Found at i:74068260 original size:29 final size:32
Alignment explanation
Indices: 74068224--74068298 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 32
74068214 CGTTTACAGT
74068224 AAAA-GCTTCGGCCCAATGA-TATGA-TTATG
1 AAAAGGCTTCGGCCCAATGATTATGATTTATG
* *
74068253 -AAAGGCTTC-GCCTAGTGATTATGATTTATG
1 AAAAGGCTTCGGCCCAATGATTATGATTTATG
*
74068283 AAAAGGCTTTGGCCCA
1 AAAAGGCTTCGGCCCA
74068299 GTAACCGTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
28 10 0.27
29 10 0.27
30 5 0.14
31 8 0.22
32 4 0.11
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (32 bp):
AAAAGGCTTCGGCCCAATGATTATGATTTATG
Found at i:74070473 original size:39 final size:39
Alignment explanation
Indices: 74070400--74070560 Score: 218
Period size: 39 Copynumber: 4.1 Consensus size: 39
74070390 TGATAACCGA
* *
74070400 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
* * * *
74070440 CTATGTCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
*
74070479 CTAAGACCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
74070518 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
74070557 CTAA
1 CTAA
74070561 ATCCCGAAGT
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
38 2 0.02
39 69 0.65
40 35 0.33
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CTAAGACCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:74070559 original size:78 final size:79
Alignment explanation
Indices: 74070400--74070569 Score: 240
Period size: 78 Copynumber: 2.2 Consensus size: 79
74070390 TGATAACCGA
* * *
74070400 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCGAAGGCATTTATGCTAG
1 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGCCCGAAGGCATTTATGCGAG
74070465 TGATTATATCCGGG
66 TGATTATATCCGGG
* *
74070479 CTAAGA-CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA
1 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAG-CCCGAAGGCATTTATGCGA
74070543 GTTG-TTATATCC-GG
65 G-TGATTATATCCGGG
74070557 CTAA-ATCCCGAAG
1 CTAAGAT-CCGAAG
74070570 TACTTGGGTT
Statistics
Matches: 82, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
77 1 0.01
78 42 0.51
79 37 0.45
80 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGCCCGAAGGCATTTATGCGAG
TGATTATATCCGGG
Found at i:74070836 original size:22 final size:22
Alignment explanation
Indices: 74070796--74070837 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
74070786 GAATGTGCAT
*
74070796 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
74070818 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
74070838 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:74078462 original size:40 final size:40
Alignment explanation
Indices: 74078383--74078559 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
74078373 CGGATGATAA
* * * *
74078383 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
74078423 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* * *
74078463 CCGGGCTAAGACCTGAAGGTATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
74078503 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74078543 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
74078560 ATACTTGGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 97 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:74078827 original size:22 final size:22
Alignment explanation
Indices: 74078787--74078828 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
74078777 GAATGTGCAT
*
74078787 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
74078809 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
74078829 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:74091266 original size:27 final size:28
Alignment explanation
Indices: 74091182--74091279 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
74091172 CCTGAGATTG
* * * *
74091182 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
74091211 ACACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
74091239 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
74091266 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
74091280 GACTTAAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:74091293 original size:29 final size:27
Alignment explanation
Indices: 74091212--74091293 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 27
74091202 AATTGTACAA
* * *
74091212 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGA-CTTAAATATATAG
* * *
74091240 CACTAAGTGTGCGAGTTGATTATATAG
1 CACTAAGTGTGCGACTTAAATATATAG
*
74091267 CACTGAGTGTGCGGACTTAAAATATAT
1 CACTAAGTGTGC-GACTT-AAATATAT
74091294 TTTTAAATCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 23 0.49
28 18 0.38
29 6 0.13
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
CACTAAGTGTGCGACTTAAATATATAG
Found at i:74102470 original size:40 final size:40
Alignment explanation
Indices: 74102400--74102497 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
74102390 AAACCAAGTA
* * * *
74102400 CCTTCAGGATTTAG-CCGGATATAGCTACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
74102439 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATG
74102479 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74102498 TTATCATCCA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
39 13 0.25
40 40 0.75
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
Found at i:74107380 original size:41 final size:41
Alignment explanation
Indices: 74107292--74107430 Score: 172
Period size: 41 Copynumber: 3.4 Consensus size: 41
74107282 TTGCGGCATT
* *
74107292 TATTGCTTTACCTTTTGCGGTGTGTTTATGAGAAAAACACCGT
1 TATTGCTTTACCTTTTGC-G-GTGTTTATGAGAAAAACGCCGC
* * *
74107335 TATTGCTTTACCTTTTGTGGTGTTTATGAGAAAAATGTCGC
1 TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACGCCGC
* * *
74107376 TATTGCTTTACCTTTTACGGTGTTTATG-CAAAAACGCCAC
1 TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACGCCGC
*
74107416 TAATGCTTTACCTTT
1 TATTGCTTTACCTTT
74107431 ACGGCGTTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 22 0.26
41 44 0.52
42 1 0.01
43 17 0.20
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (41 bp):
TATTGCTTTACCTTTTGCGGTGTTTATGAGAAAAACGCCGC
Found at i:74124292 original size:47 final size:46
Alignment explanation
Indices: 74124222--74124352 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 46
74124212 ATTCGTGTGT
**
74124222 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCGCATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCGCAAGATGA
* ***
74124268 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCGCAAGATGA
* *
74124316 GGGCTAGTGTAAGACATGTCTGGGACATGTATCGGCC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
74124353 TCGAGACATA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 20 0.27
47 28 0.38
48 25 0.34
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCGCAAGATGA
Found at i:74127089 original size:30 final size:30
Alignment explanation
Indices: 74127055--74127115 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74127045 TCCTTAACTC
74127055 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74127085 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74127115 A
1 A
74127116 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74129394 original size:30 final size:30
Alignment explanation
Indices: 74129360--74129420 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74129350 TCCTTAACTC
74129360 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74129390 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74129420 A
1 A
74129421 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74132623 original size:47 final size:48
Alignment explanation
Indices: 74132543--74132662 Score: 133
Period size: 47 Copynumber: 2.6 Consensus size: 48
74132533 ACAGCCAAAA
* * * * *
74132543 TAAGA-CATGTCTGGGACAT-GCATTGGCTGTGAGAT-GGTAGTCAGTG
1 TAAGACCATGTCTGAGACATGGCATCGACTGTGAGATATG-AGCCAGTG
74132589 TAAGACCATGTCTGAGACATGGCATCGACT-TGAGATATGAGCCAGTG
1 TAAGACCATGTCTGAGACATGGCATCGACTGTGAGATATGAGCCAGTG
*
74132636 TAAGACCGTGTCT-AGGACATGGCATCG
1 TAAGACCATGTCTGA-GACATGGCATCG
74132663 GCACCTTACC
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
46 6 0.09
47 50 0.78
48 8 0.12
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGAGACATGGCATCGACTGTGAGATATGAGCCAGTG
Found at i:74146261 original size:37 final size:37
Alignment explanation
Indices: 74146207--74146346 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
74146197 CGAATAGTCC
* *
74146207 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
74146244 CCATACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
74146281 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
74146318 CCACACGTAGTCATTGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
74146347 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:74146545 original size:48 final size:48
Alignment explanation
Indices: 74146487--74147343 Score: 1507
Period size: 48 Copynumber: 17.9 Consensus size: 48
74146477 ATATACACAC
* *
74146487 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74146535 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74146583 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
74146631 ATCTCATTCATATTTCACACTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74146679 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74146727 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74146775 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACGACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74146823 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74146871 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74146919 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74146967 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
74147015 ATCTCATACATATTTCACCCTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74147063 ATCTCATATATATTTCACATTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74147111 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74147159 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74147207 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * * *
74147255 ATCTCATTCATATTTCACACTAGTCATTCGGTTTTACCACATGTACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74147303 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
74147344 CACATATATA
Statistics
Matches: 777, Mismatches: 32, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 777 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:74156013 original size:16 final size:16
Alignment explanation
Indices: 74155989--74156027 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
74155979 ACGTAGTGTC
*
74155989 ATGCAATAGATGAAAG
1 ATGCTATAGATGAAAG
74156005 ATGCTATAGATGAAAG
1 ATGCTATAGATGAAAG
74156021 ATGCTAT
1 ATGCTAT
74156028 GGTAGCATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (16 bp):
ATGCTATAGATGAAAG
Found at i:74159697 original size:34 final size:34
Alignment explanation
Indices: 74159638--74159711 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 34
74159628 AGTGCCACGA
* * *
74159638 TTCACAACTTAGTATGGAAACACCATACCTACAT
1 TTCACAACTCAGTATAGAAACACCATACCCACAT
* * *
74159672 TTCACAACTCGGTATAGAAATACCATACCCACGT
1 TTCACAACTCAGTATAGAAACACCATACCCACAT
74159706 TTCACA
1 TTCACA
74159712 CTTTTCCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.26
Consensus pattern (34 bp):
TTCACAACTCAGTATAGAAACACCATACCCACAT
Found at i:74159809 original size:27 final size:27
Alignment explanation
Indices: 74159769--74159830 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
74159759 CACTGAACAG
* * *
74159769 TTTGCTATGTTTGGCACAGTATATCAC
1 TTTGCCATGATTGGCACACTATATCAC
*
74159796 TTTGCCATGATTGGCACACTTTATCAC
1 TTTGCCATGATTGGCACACTATATCAC
74159823 TTTGCCAT
1 TTTGCCAT
74159831 AGTTCAACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (27 bp):
TTTGCCATGATTGGCACACTATATCAC
Found at i:74159963 original size:31 final size:31
Alignment explanation
Indices: 74159920--74160067 Score: 206
Period size: 31 Copynumber: 4.8 Consensus size: 31
74159910 CTTATCACTT
* * *
74159920 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
* *
74159951 GTAGCTGGAGCTACCACTTTTCATTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
* *
74159982 GTAGCCGAAGCTACTACTTTTCACTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
* *
74160013 GTAGCTGAAGCTACCACTTTTCATTAATCAA
1 GTAGCTGAAGCTACCACTTTTCACTAATCAG
*
74160044 GTAGCTAAAGCTACCACTTTTCAC
1 GTAGCTGAAGCTACCACTTTTCAC
74160068 ATTGTACACA
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTAATCAG
Found at i:74159992 original size:62 final size:62
Alignment explanation
Indices: 74159920--74160067 Score: 233
Period size: 62 Copynumber: 2.4 Consensus size: 62
74159910 CTTATCACTT
* * * *
74159920 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCTGGAGCTACCACTTTTCATTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
*
74159982 GTAGCCGAAGCTACTACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
1 GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
**
74160044 GTAGCTAAAGCTACCACTTTTCAC
1 GTAGCCGAAGCTACCACTTTTCAC
74160068 ATTGTACACA
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 78 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTAATCAGGTAGCTGAAGCTACCACTTTTCATTAATCAA
Found at i:74160158 original size:33 final size:32
Alignment explanation
Indices: 74160060--74160163 Score: 109
Period size: 33 Copynumber: 3.2 Consensus size: 32
74160050 AAAGCTACCA
* * *
74160060 CTTTTCACATTGTACACACAAGGCGTACATTTC
1 CTTTTCA-AGTGTACACACAAAGTGTACATTTC
* *
74160093 CTTTTCAAGTGTACACACAAAGTGCACGTTTC
1 CTTTTCAAGTGTACACACAAAGTGTACATTTC
* * * *
74160125 CTTTTTAAGTTGTACATACACAGTTTACATTTC
1 CTTTTCAAG-TGTACACACAAAGTGTACATTTC
74160158 CTTTTC
1 CTTTTC
74160164 CCGTGTACCT
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
32 28 0.48
33 30 0.52
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (32 bp):
CTTTTCAAGTGTACACACAAAGTGTACATTTC
Found at i:74162008 original size:49 final size:49
Alignment explanation
Indices: 74161951--74162051 Score: 175
Period size: 49 Copynumber: 2.1 Consensus size: 49
74161941 AATCATTACA
74161951 TTCTAGAATTCTCTCTCTTACTAATTGACCATTTTGACCTTAAAATATT
1 TTCTAGAATTCTCTCTCTTACTAATTGACCATTTTGACCTTAAAATATT
* **
74162000 TTCTAGAATTCTCTCTCTTACTAATTGACTATTTTTCCCTTAAAATATT
1 TTCTAGAATTCTCTCTCTTACTAATTGACCATTTTGACCTTAAAATATT
74162049 TTC
1 TTC
74162052 ACTGTTGGTC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.48
Consensus pattern (49 bp):
TTCTAGAATTCTCTCTCTTACTAATTGACCATTTTGACCTTAAAATATT
Found at i:74164495 original size:48 final size:48
Alignment explanation
Indices: 74164341--74164488 Score: 201
Period size: 48 Copynumber: 3.1 Consensus size: 48
74164331 ATATATACAC
* **
74164341 ATCTCATACATATTTCACATTAGCCATT-TGGCTTTACTACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCT-GCTTTACCACATATATAT
** *
74164389 GGCTCATACATATTTCACATTAGCCTTTC-GACTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCTG-CTTTACCACATATATAT
*
74164437 ATCTCATACATATTTTACATTAGCCATTCTGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCTGCTTTACCACATATATAT
74164485 ATCT
1 ATCT
74164489 TGTACATCAA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
47 1 0.01
48 85 0.98
49 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.40
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCTGCTTTACCACATATATAT
Found at i:74165802 original size:26 final size:27
Alignment explanation
Indices: 74165757--74165809 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74165747 TTAAATTCTG
* *
74165757 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
74165784 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
74165810 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:74168379 original size:27 final size:27
Alignment explanation
Indices: 74168332--74168383 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
74168322 TTTGCTATGT
*
74168332 TTGGCACACTATATCACTTTGCCATCA
1 TTGGCACACTATATCAATTTGCCATCA
* *
74168359 TTGGCACACTTTATTAATTTGCCAT
1 TTGGCACACTATATCAATTTGCCAT
74168384 AGTTCAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (27 bp):
TTGGCACACTATATCAATTTGCCATCA
Found at i:74168516 original size:31 final size:31
Alignment explanation
Indices: 74168480--74168588 Score: 148
Period size: 31 Copynumber: 3.5 Consensus size: 31
74168470 CTTGTAGCTA
* *
74168480 AAGCTACCACTATTCACTAATCAGGTAGCTG
1 AAGCTACCACTTTTCACTAATCAGGTAGCCG
* *
74168511 GAGCTACCACTTTTCACTAATCAGGTAGCCA
1 AAGCTACCACTTTTCACTAATCAGGTAGCCG
* * *
74168542 AAGCTACTAC-TTTCAATGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTAATCAGGTAGCCG
74168572 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
74168589 ATTGTACACA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
30 26 0.39
31 40 0.61
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTAATCAGGTAGCCG
Found at i:74168577 original size:61 final size:62
Alignment explanation
Indices: 74168473--74168588 Score: 171
Period size: 61 Copynumber: 1.9 Consensus size: 62
74168463 CTTATCACTT
* * * *
74168473 GTAGCTAAAGCTACCACTATTCACTAATCAGGTAGCTGGAGCTACCACTTTTCACTAATCAG
1 GTAGCCAAAGCTACCACTATTCAATAATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAG
* *
74168535 GTAGCCAAAGCTACTACT-TTCAATGATCAGGTAGCCGAAGCTACCACTTTTCAC
1 GTAGCCAAAGCTACCACTATTCAATAATCAGGTAGCCGAAGCTACCACTTTTCAC
74168589 ATTGTACACA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
61 32 0.67
62 16 0.33
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (62 bp):
GTAGCCAAAGCTACCACTATTCAATAATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAG
Found at i:74168664 original size:33 final size:33
Alignment explanation
Indices: 74168581--74168693 Score: 149
Period size: 33 Copynumber: 3.5 Consensus size: 33
74168571 GAAGCTACCA
* *
74168581 CTTTTCACA-TTGTACACACAAGGCGTACATTTC
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
74168614 CTTTTCAA-TTGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
74168646 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
74168679 CTTTTCCAGTTGTAC
1 CTTTTCAAGTTGTAC
74168694 CTTTTAGGTA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 29 0.41
33 42 0.59
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:74171090 original size:30 final size:30
Alignment explanation
Indices: 74171054--74171111 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
74171044 ACACAGGTAG
74171054 GGACACGGTCGTGTGCCTCAGCCGTGTGGA
1 GGACACGGTCGTGTGCCTCAGCCGTGTGGA
74171084 GGACACGGTCGTGTGCCTCAGCCGTGTG
1 GGACACGGTCGTGTGCCTCAGCCGTGTG
74171112 CCACGACTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.12, C:0.28, G:0.40, T:0.21
Consensus pattern (30 bp):
GGACACGGTCGTGTGCCTCAGCCGTGTGGA
Found at i:74177799 original size:94 final size:94
Alignment explanation
Indices: 74177634--74177806 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
74177624 ACTTGTGTGA
* * ** *
74177634 GCTAGTGTATGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCATGTA
*
74177699 TTGGACATGGCATCAGCATTGAGACAAGT
66 TAGGACATGGCATCAGCATTGAGACAAGT
* * *
74177728 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCTCA-AAGATGATAGCCAGTGTGAGATCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CACAAGATGAGAGCCAGTGTAAGACCATGT
*
74177792 CTAGGACATGGCATC
65 ATAGGACATGGCATC
74177807 GGCACCTCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
94 66 0.97
95 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCATGTA
TAGGACATGGCATCAGCATTGAGACAAGT
Found at i:74180080 original size:39 final size:39
Alignment explanation
Indices: 74180053--74180211 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
74180043 TGTCCAGCAC
*
74180053 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* *
74180092 ATAGCCTGTGGAAATAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* *
74180131 ATAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
* * *
74180170 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
74180209 ATA
1 ATA
74180212 TATATTCACA
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (39 bp):
ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
Found at i:74189185 original size:35 final size:34
Alignment explanation
Indices: 74189111--74189191 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 34
74189101 TGTGAAGTTC
**
74189111 TATTGAACTTGTATATTCGATTTCATATGAGGTTA
1 TATTGAACTTGTATATTCGA-GCCATATGAGGTTA
* *
74189146 TATTGAATTTGTATATTCG-GCCATATGAGATGTTT
1 TATTGAACTTGTATATTCGAGCCATATGAG--GTTA
74189181 TATTGAACTTG
1 TATTGAACTTG
74189192 AACATTAGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
33 8 0.21
35 31 0.79
ACGTcount: A:0.27, C:0.09, G:0.19, T:0.46
Consensus pattern (34 bp):
TATTGAACTTGTATATTCGAGCCATATGAGGTTA
Found at i:74189302 original size:50 final size:52
Alignment explanation
Indices: 74189243--74189343 Score: 116
Period size: 50 Copynumber: 2.0 Consensus size: 52
74189233 TGGCCATATG
* * *
74189243 AGATAATATAATGAACCTTGTATA-TTT-GGCTATATAGGTAAGTTTTTATA
1 AGATAATATAATGAACCTTATATATTTTCGGCTATATAAGTAAGTATTTATA
* * * * *
74189293 AGATGATATATTGTATCTTATATATTTTCGGTTATATAAGTAAGTATTTAT
1 AGATAATATAATGAACCTTATATATTTTCGGCTATATAAGTAAGTATTTAT
74189344 GTGGTGTTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
50 19 0.46
51 3 0.07
52 19 0.46
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.46
Consensus pattern (52 bp):
AGATAATATAATGAACCTTATATATTTTCGGCTATATAAGTAAGTATTTATA
Found at i:74189505 original size:13 final size:13
Alignment explanation
Indices: 74189487--74189514 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74189477 ACTAAGCTAA
74189487 GTTGGCTTACTCT
1 GTTGGCTTACTCT
74189500 GTTGGCTTACTCT
1 GTTGGCTTACTCT
74189513 GT
1 GT
74189515 GTGCATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.21, G:0.25, T:0.46
Consensus pattern (13 bp):
GTTGGCTTACTCT
Found at i:74196884 original size:35 final size:35
Alignment explanation
Indices: 74196836--74196934 Score: 103
Period size: 35 Copynumber: 2.9 Consensus size: 35
74196826 ATTTGAGGTC
* * * *
74196836 ATATTGAGTTTGTACATTCGGCTGCTTGTGAAGTT
1 ATATTGAATTTGTATATTCGGCTGCATATGAAGTT
* ** * *
74196871 ATATTGAACTTGTATATTCGATTTCATATGAGGTT
1 ATATTGAATTTGTATATTCGGCTGCATATGAAGTT
74196906 ATATTGAATTTGTATATTCGGC--CATATGA
1 ATATTGAATTTGTATATTCGGCTGCATATGA
74196935 GATATTTTAT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
33 7 0.13
35 45 0.87
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.43
Consensus pattern (35 bp):
ATATTGAATTTGTATATTCGGCTGCATATGAAGTT
Found at i:74196946 original size:35 final size:35
Alignment explanation
Indices: 74196869--74197038 Score: 121
Period size: 35 Copynumber: 4.8 Consensus size: 35
74196859 GCTTGTGAAG
** *
74196869 TTATATTGAACTTGTATATTCGATTTCATATGAG--G
1 TTATATTGAACTTGTATATTCG--GCCATATGAGATA
*
74196904 TTATATTGAATTTGTATATTCGGCCATATGAGATA
1 TTATATTGAACTTGTATATTCGGCCATATGAGATA
* * * * ** * *
74196939 TTTTATTGAACTTGAACATTAGGTTACATGTGATGA
1 TTATATTGAACTTGTATATTCGGCCATATGAGAT-A
* *
74196975 TAAT-TTGAACTTATATATTCGGCCATATGAGATA
1 TTATATTGAACTTGTATATTCGGCCATATGAGATA
* * * *
74197009 TTATAATGAACCTTGTGTATTTGGCTATAT
1 TTATATTGAA-CTTGTATATTCGGCCATAT
74197039 AGGTAAGTTT
Statistics
Matches: 101, Mismatches: 29, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
33 8 0.08
34 4 0.04
35 71 0.70
36 18 0.18
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (35 bp):
TTATATTGAACTTGTATATTCGGCCATATGAGATA
Found at i:74196946 original size:70 final size:70
Alignment explanation
Indices: 74196869--74197029 Score: 180
Period size: 70 Copynumber: 2.3 Consensus size: 70
74196859 GCTTGTGAAG
* * * * *
74196869 TTATATTGAACTTGTATATTCGATTTCATATGAGG-TTATATTGAATTTGTATATTCGGCCATAT
1 TTATATTGAACTTGTATATTAGATTACATATGAGGATAAT-TTGAACTTATATATTCGGCCATAT
74196933 GAGATA
65 GAGATA
* * * * * *
74196939 TTTTATTGAACTTGAACATTAGGTTACATGTGATGATAATTTGAACTTATATATTCGGCCATATG
1 TTATATTGAACTTGTATATTAGATTACATATGAGGATAATTTGAACTTATATATTCGGCCATATG
74197004 AGATA
66 AGATA
* *
74197009 TTATAATGAACCTTGTGTATT
1 TTATATTGAA-CTTGTATATT
74197030 TGGCTATATA
Statistics
Matches: 73, Mismatches: 16, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
70 63 0.86
71 10 0.14
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (70 bp):
TTATATTGAACTTGTATATTAGATTACATATGAGGATAATTTGAACTTATATATTCGGCCATATG
AGATA
Found at i:74208824 original size:35 final size:35
Alignment explanation
Indices: 74208778--74208848 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
74208768 CATTGTGTAC
74208778 AAGTTTTTGATGTAAATTGATGAATACGAACAGAG
1 AAGTTTTTGATGTAAATTGATGAATACGAACAGAG
74208813 AAGTTTTTGATGTAAATTGATGAATACGAACAGAG
1 AAGTTTTTGATGTAAATTGATGAATACGAACAGAG
74208848 A
1 A
74208849 TGATGTGCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.31
Consensus pattern (35 bp):
AAGTTTTTGATGTAAATTGATGAATACGAACAGAG
Found at i:74212288 original size:28 final size:28
Alignment explanation
Indices: 74212244--74212332 Score: 135
Period size: 28 Copynumber: 3.2 Consensus size: 28
74212234 AGCATGGCTG
* *
74212244 CCAG-AACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* *
74212271 CTAGAAACAGTTATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
74212299 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
74212327 CCAGAA
1 CCAGAA
74212333 CGCTTCCTCC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
27 3 0.05
28 52 0.95
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:74212495 original size:26 final size:25
Alignment explanation
Indices: 74212439--74212497 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
74212429 ATCAACCCTA
* *
74212439 AGGGTATAATGGTCATTTTGCACCT
1 AGGGTATAATGGTAATTTTGCACAT
74212464 AGGGGTATAATGGTAATTTT-CATACAT
1 A-GGGTATAATGGTAATTTTGC--ACAT
74212491 AGGGTAT
1 AGGGTAT
74212498 TTTAGTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 23 0.79
27 4 0.14
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (25 bp):
AGGGTATAATGGTAATTTTGCACAT
Found at i:74214453 original size:22 final size:22
Alignment explanation
Indices: 74214425--74214499 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
74214415 TTCCACATCC
74214425 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
74214447 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
74214471 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
74214494 ATCACA
1 ATCACA
74214500 CATACACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:74214460 original size:47 final size:47
Alignment explanation
Indices: 74214397--74214895 Score: 736
Period size: 47 Copynumber: 10.6 Consensus size: 47
74214387 CCCTTCGGGA
* * *
74214397 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74214444 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
74214491 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
74214538 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
74214585 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
74214632 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
74214679 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
74214726 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
74214775 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
74214822 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74214869 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
74214896 TATTCAAATA
Statistics
Matches: 428, Mismatches: 20, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 380 0.89
48 1 0.00
49 46 0.11
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:74216290 original size:85 final size:85
Alignment explanation
Indices: 74216157--74216335 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
74216147 TATTTTATTG
*
74216157 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
74216222 TAGCCATAACATCTTGCCCA
66 TAGCCATAACATCTTGCCCA
*
74216242 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCTAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
74216307 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGCCCA
74216327 CCCATGCTC
1 CCCATGCTC
74216336 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGCCCA
Found at i:74217680 original size:20 final size:18
Alignment explanation
Indices: 74217641--74217691 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
74217631 GGCTATAGAG
74217641 GAAAATAAGAAGA-A-GA
1 GAAAATAAGAAGAGAGGA
74217657 GAAAATAGATGAAGAGAGGA
1 GAAAATA-A-GAAGAGAGGA
74217677 GAAAATAAGAAGAGA
1 GAAAATAAGAAGAGA
74217692 AAAGAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
16 7 0.23
17 1 0.03
18 12 0.39
19 2 0.06
20 9 0.29
ACGTcount: A:0.63, C:0.00, G:0.29, T:0.08
Consensus pattern (18 bp):
GAAAATAAGAAGAGAGGA
Found at i:74217697 original size:18 final size:18
Alignment explanation
Indices: 74217641--74217697 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
74217631 GGCTATAGAG
74217641 GAAAATAAG-A-AGAAGA
1 GAAAATAAGAAGAGAAGA
*
74217657 GAAAATAGATGAAGAGAGGA
1 GAAAATA-A-GAAGAGAAGA
*
74217677 GAAAATAAGAAGAGAAAA
1 GAAAATAAGAAGAGAAGA
74217695 GAA
1 GAA
74217698 TTTTCAGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 7 0.21
17 1 0.03
18 12 0.35
19 2 0.06
20 12 0.35
ACGTcount: A:0.65, C:0.00, G:0.28, T:0.07
Consensus pattern (18 bp):
GAAAATAAGAAGAGAAGA
Found at i:74219633 original size:26 final size:25
Alignment explanation
Indices: 74219603--74219654 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
74219593 CCCTTATAAT
* *
74219603 GTGAAAATAACCTTTTTTACCCCTAG
1 GTGAAAATAACC-ATTATACCCCTAG
*
74219629 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
74219654 G
1 G
74219655 GTTATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
GTGAAAATAACCATTATACCCCTAG
Found at i:74219741 original size:23 final size:21
Alignment explanation
Indices: 74219694--74219734 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
74219684 CTGCTTTTAT
*
74219694 ACATGATTTGCCATGATATAA
1 ACATGATATGCCATGATATAA
74219715 ACATGATATGCCATGATATA
1 ACATGATATGCCATGATATA
74219735 TTCACATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (21 bp):
ACATGATATGCCATGATATAA
Found at i:74219813 original size:25 final size:25
Alignment explanation
Indices: 74219780--74219850 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
74219770 AGGAAGTGCT
74219780 AAAAA-GGCTTTGCCCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTACC
* *
74219804 AAAAAGGGCTTTGCCCCAATTTATC
1 AAAAAGGGCTTTGCCCCAGTTTACC
74219829 AAAAAGGGCTTTGCCCCAGTTT
1 AAAAAGGGCTTTGCCCCAGTTT
74219851 TTAAAAGAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
24 5 0.12
25 38 0.88
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTACC
Found at i:74223485 original size:10 final size:10
Alignment explanation
Indices: 74223470--74223508 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
74223460 TGCTTTTGTA
74223470 CATGATATGC
1 CATGATATGC
74223480 CATGATATGC
1 CATGATATGC
74223490 ACATGATATGC
1 -CATGATATGC
*
74223501 GATGATAT
1 CATGATAT
74223509 ATTCACATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:74223494 original size:21 final size:21
Alignment explanation
Indices: 74223469--74223508 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
74223459 CTGCTTTTGT
74223469 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
*
74223490 ACATGATATGCGATGATAT
1 ACATGATATGCCATGATAT
74223509 ATTCACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:74223589 original size:25 final size:25
Alignment explanation
Indices: 74223555--74223625 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
74223545 AGGAAGTGCT
*
74223555 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
74223580 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
74223605 AAAAGGGCTTTGCCCCAGTTT
1 AAAAGGGCTTTGCCCCAGTTT
74223626 TTAAAAGAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:74224725 original size:33 final size:34
Alignment explanation
Indices: 74224652--74224722 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
74224642 CCTGATCAGA
74224652 CCCCAACTCTTTCCCCACGCGTGCAGCAAAAAAT
1 CCCCAACTCTTTCCCCACGCGTGCAGCAAAAAAT
*
74224686 CCCCAACTCTTTCCCCATGCGTGCAGCAAAAAAT
1 CCCCAACTCTTTCCCCACGCGTGCAGCAAAAAAT
74224720 CCC
1 CCC
74224723 AACCTTACGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.28, C:0.42, G:0.11, T:0.18
Consensus pattern (34 bp):
CCCCAACTCTTTCCCCACGCGTGCAGCAAAAAAT
Found at i:74233903 original size:42 final size:42
Alignment explanation
Indices: 74233844--74234415 Score: 685
Period size: 42 Copynumber: 13.6 Consensus size: 42
74233834 CTTCATATAC
* *
74233844 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
74233886 AATGCAATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
74233928 AATGCAATAAAAAGTAAATGGACGTCCATACCTGTGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
74233970 TATGCAATAAAAAGCAAATGGACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
74234012 AATGCAATGAAATGTGAATGGACCTCCACACCTAGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
74234054 AATGCAATGAAATGTGAATGGACCTCTACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
74234096 AATGCAATGAAATGTGAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
74234138 AATGCAATGAAATGTGAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
74234180 AATGCAATGAAAAGTAAATGAAGCTCAACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
74234222 AATGCAACGAAAAGTAAAAGGACCTCCACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * ****
74234264 AATACAAGGAAAAGTAAAGGGACCTCCACACCTAAATCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * * **
74234306 AATGCAATGAAAAGTGAATAGACTTCCACACTTGGATCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * ** * * *
74234348 AATGCGATGAAAAGTGAATAAACCTCCAAACTTGGGCCCCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
74234390 AATGTAATGAAAAGTAAATGGACCTC
1 AATGCAATGAAAAGTAAATGGACCTC
74234416 ATACGTAACA
Statistics
Matches: 464, Mismatches: 66, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 464 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:74240746 original size:40 final size:40
Alignment explanation
Indices: 74240566--74240742 Score: 171
Period size: 40 Copynumber: 4.5 Consensus size: 40
74240556 ACCCAAGTAT
* *** *
74240566 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * * *
74240604 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * *
74240644 CTTCGGGTCTTAGCCCGGATATAGCAATTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
74240684 CTTCGGGACTTAGCCCAGA-ATTAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
*
74240724 CTTCGAGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
74240743 ATTAATCACT
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
38 11 0.10
39 16 0.14
40 86 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:74240772 original size:40 final size:40
Alignment explanation
Indices: 74240675--74240775 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
74240665 TAGCAATTCA
* *
74240675 CACAAATGCCTTCGG-GACTTAGCCCAGAATTAGTAACTCG
1 CACAAATGCCTT-GGAGACTTAGCCCAGAATTAATAACTAG
* * * *
74240715 CACCAATGCCTTCGAGACTTAGCCCGGAATTAATCACTAG
1 CACAAATGCCTTGGAGACTTAGCCCAGAATTAATAACTAG
*
74240755 CACAAATGTCTTGGAGACTTA
1 CACAAATGCCTTGGAGACTTA
74240776 ACCCCGTTAG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.02
40 50 0.98
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
CACAAATGCCTTGGAGACTTAGCCCAGAATTAATAACTAG
Found at i:74243889 original size:20 final size:19
Alignment explanation
Indices: 74243860--74243934 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 19
74243850 CTCTTTATTT
*
74243860 TTTTTATTTTTTTGTTTTCC
1 TTTTTGTTTTTTTGTTTT-C
* *
74243880 TTTTTGTTTTGTTGTTTTGT
1 TTTTTGTTTTTTTGTTTT-C
*
74243900 TGTTTTGTTGTTTT-TTTTC
1 T-TTTTGTTTTTTTGTTTTC
*
74243919 TTTTT-TTTTTGTGTTT
1 TTTTTGTTTTTTTGTTT
74243935 GTTTTATTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
17 5 0.11
18 7 0.16
19 1 0.02
20 21 0.48
21 10 0.23
ACGTcount: A:0.01, C:0.04, G:0.13, T:0.81
Consensus pattern (19 bp):
TTTTTGTTTTTTTGTTTTC
Found at i:74243894 original size:8 final size:8
Alignment explanation
Indices: 74243883--74243913 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
74243873 GTTTTCCTTT
74243883 TTGTTTTG
1 TTGTTTTG
74243891 TTGTTTTG
1 TTGTTTTG
74243899 TTGTTTTG
1 TTGTTTTG
74243907 TTGTTTT
1 TTGTTTT
74243914 TTTTCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (8 bp):
TTGTTTTG
Found at i:74243897 original size:13 final size:12
Alignment explanation
Indices: 74243881--74243939 Score: 59
Period size: 13 Copynumber: 4.8 Consensus size: 12
74243871 TTGTTTTCCT
74243881 TTTTGTTTTGTTG
1 TTTTGTTTT-TTG
74243894 TTTTGTTGTTTTG
1 TTTTGTT-TTTTG
*
74243907 TTGTT-TTTTTTC
1 TT-TTGTTTTTTG
74243919 TTTT-TTTTTTG
1 TTTTGTTTTTTG
74243930 TGTTTGTTTT
1 T-TTTGTTTT
74243940 ATTTTGGCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
11 9 0.22
12 9 0.22
13 18 0.45
14 4 0.10
ACGTcount: A:0.00, C:0.02, G:0.17, T:0.81
Consensus pattern (12 bp):
TTTTGTTTTTTG
Found at i:74243933 original size:22 final size:23
Alignment explanation
Indices: 74243902--74243944 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
74243892 TGTTTTGTTG
* *
74243902 TTTTGTTGTTTTTTTTCTTTTTT
1 TTTTGTTGTTTGTTTTATTTTTT
74243925 TTTTG-TGTTTGTTTTATTTT
1 TTTTGTTGTTTGTTTTATTTT
74243945 GGCAAAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (23 bp):
TTTTGTTGTTTGTTTTATTTTTT
Found at i:74258728 original size:23 final size:23
Alignment explanation
Indices: 74258688--74258743 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
74258678 TTTTCTGTTT
74258688 TTAC-TTTTATTCTACTTTAAGA
1 TTACTTTTTATTCTACTTTAAGA
* * *
74258710 TTACTTTTTATTTTTCTTTAAGC
1 TTACTTTTTATTCTACTTTAAGA
74258733 TTA-TTTTTATT
1 TTACTTTTTATT
74258744 AGGTTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.21, C:0.11, G:0.04, T:0.64
Consensus pattern (23 bp):
TTACTTTTTATTCTACTTTAAGA
Found at i:74262812 original size:49 final size:48
Alignment explanation
Indices: 74262753--74262924 Score: 163
Period size: 49 Copynumber: 3.5 Consensus size: 48
74262743 GTTGTGTGTT
* *
74262753 AGTGTAAGACCTGTCTAGGACATGGCATTGATAC-CGATACATGAGAGCC
1 AGTGTAAGACCTGTCT-GGACATGGCATT-AGACTCGATACATGAAAGCC
* * **
74262802 AGTGTAAGACCTGTCTGAGACATGGCATTAGCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTG-GACATGGCATTAGACTCGATACATGAAAGCC
* * **
74262851 AGTGTAAGACCTGTCTGGAACATGGCA-TCGACTTTGAT--ATGTTAGCC
1 AGTGTAAGACCTGTCTGG-ACATGGCATTAGAC-TCGATACATGAAAGCC
74262898 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCT-GGACATGGC
74262925 GTCGGCATCT
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
47 16 0.15
48 19 0.18
49 69 0.66
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGACATGGCATTAGACTCGATACATGAAAGCC
Found at i:74269255 original size:49 final size:48
Alignment explanation
Indices: 74269202--74269308 Score: 126
Period size: 49 Copynumber: 2.2 Consensus size: 48
74269192 AAGACTTGTT
* * * *
74269202 TGGGACATGGCATCGACAC-CGATGGATGAGAGCCAGTGTAAGACCTATC
1 TGGGACATGGCATCGAC-CTCGATAGATGAAAGCCAGTGTAAAACCT-GC
* * *
74269251 TGGGACATGGCATCGGCCTCGATATATGAAAGTCAGTGTAAAACCTGC
1 TGGGACATGGCATCGACCTCGATAGATGAAAGCCAGTGTAAAACCTGC
74269299 TGGGACATGG
1 TGGGACATGG
74269309 AATTGACTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 12 0.24
49 38 0.76
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.21
Consensus pattern (48 bp):
TGGGACATGGCATCGACCTCGATAGATGAAAGCCAGTGTAAAACCTGC
Found at i:74273878 original size:48 final size:49
Alignment explanation
Indices: 74273756--74273926 Score: 147
Period size: 48 Copynumber: 3.6 Consensus size: 49
74273746 CTTATTGTGT
* *
74273756 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACACTGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
* * ** *
74273805 GCCAATGTAAGACCTGTCTTAGACATGGCATCG-C-CTCGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGAAA
** ** * **
74273853 GTCAGTGTAAGACCAATCTGGGACATAACATC-A-ACT--TTGATGTTA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
* *
74273898 GCCAGTGTAAGACATGTCTGGGACATGGC
1 GTCAGTGTAAGACCTGTCTGGGACATGGC
74273927 GTCGGCATCT
Statistics
Matches: 94, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
45 28 0.30
47 2 0.02
48 36 0.38
49 28 0.30
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
Found at i:74276433 original size:46 final size:45
Alignment explanation
Indices: 74276377--74276552 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
74276367 TGTTTGGGAA
*
74276377 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
74276423 TCTGAGCTCGTTGAGTTGTGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
74276470 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
74276516 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74276553 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:74276539 original size:93 final size:93
Alignment explanation
Indices: 74276376--74276545 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
74276366 ATGTTTGGGA
* * *
74276376 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
*
74276441 TGTCCGAGTTCGAGAGATGTAACTAGGC
66 AGTCCGAGTTCGAGAGATGTAACTAGGC
* *
74276469 ATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
74276534 AGTCCGAGTTCG
66 AGTCCGAGTTCG
74276546 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGTAACTAGGC
Found at i:74283997 original size:44 final size:44
Alignment explanation
Indices: 74283905--74284027 Score: 148
Period size: 44 Copynumber: 2.8 Consensus size: 44
74283895 ACAATGCTAA
* *
74283905 TGTCCCA-AATGTGGTCTTACATGT-AATCACATATCAATGCCAC
1 TGTCCCAGAA-GTGGTCTTACACGTAAATCACATATCGATGCCAC
*
74283948 TGTCCCAGACAG-GGTCTTACACGTAAATCACAAATCGATGCCAAC
1 TGTCCCAGA-AGTGGTCTTACACGTAAATCACATATCGATGCC-AC
*
74283993 -GTCCCAGATGTGGTCTTACACG-AAATCACATATCG
1 TGTCCCAGAAGTGGTCTTACACGTAAATCACATATCG
74284028 GAACCCTATT
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
43 31 0.44
44 36 0.51
45 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (44 bp):
TGTCCCAGAAGTGGTCTTACACGTAAATCACATATCGATGCCAC
Found at i:74290017 original size:40 final size:40
Alignment explanation
Indices: 74289973--74290197 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
74289963 AACCCAATTA
* * ** *
74289973 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * *
74290013 CCTTCGGGACTTAACCTGGAAATAGCAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
74290053 CCTTCGGGACTTAACCTGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * * *
74290093 CCTTTGGGACTCAACCCGGGAATAACAACTAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* *
74290133 CCTTCGGGACTTAACCCGAAAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
74290173 CCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAA
74290198 TCCTCAATTG
Statistics
Matches: 162, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 162 1.00
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
Found at i:74294370 original size:55 final size:55
Alignment explanation
Indices: 74294310--74294421 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
74294300 CCTATTATAC
74294310 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATAT
1 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATAT
74294365 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATAT
1 ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATAT
74294420 AT
1 AT
74294422 GCCATGTATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.42, C:0.27, G:0.04, T:0.28
Consensus pattern (55 bp):
ATCATACCTACCATTTCTCATAGCTGAATCATATAACCAAACATCACAAACATAT
Found at i:74294397 original size:27 final size:27
Alignment explanation
Indices: 74294310--74294397 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
74294300 CCTATTATAC
74294310 ATCATACCTACCATTTCTCATAGCTGA
1 ATCATACCTACCATTTCTCATAGCTGA
** * *
74294337 ATCATA--TAACCA-AACATCACAAACAT-A
1 ATCATACCT-ACCATTTC-TCA-TAGC-TGA
74294364 TATCATACCTACCATTTCTCATAGCTGA
1 -ATCATACCTACCATTTCTCATAGCTGA
74294392 ATCATA
1 ATCATA
74294398 TAACCAAACA
Statistics
Matches: 44, Mismatches: 8, Indels: 18
0.63 0.11 0.26
Matches are distributed among these distances:
25 2 0.05
26 7 0.16
27 16 0.36
28 10 0.23
29 7 0.16
30 2 0.05
ACGTcount: A:0.39, C:0.27, G:0.05, T:0.30
Consensus pattern (27 bp):
ATCATACCTACCATTTCTCATAGCTGA
Found at i:74295366 original size:44 final size:43
Alignment explanation
Indices: 74295266--74295393 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
74295256 CTCATACAAC
* ***
74295266 GCCAATGTCCCAGACGTGGTCTTACATGTAATCACATATCGAT
1 GCCACTGTCCCAGACGTGGTCTTACACAAAATCACATATCGAT
*
74295309 GCCACTGTCCCAGACAGT-GTCTTACACATAAATCACAAATCGAT
1 GCCACTGTCCCAGAC-GTGGTCTTACACA-AAATCACATATCGAT
*
74295353 GCCAAC-GTGCCAGACGTGGTCTTACACAAAATCACATATCG
1 GCC-ACTGTCCCAGACGTGGTCTTACACAAAATCACATATCG
74295394 GAACCCTATG
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
43 36 0.49
44 36 0.49
45 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
GCCACTGTCCCAGACGTGGTCTTACACAAAATCACATATCGAT
Found at i:74303538 original size:18 final size:19
Alignment explanation
Indices: 74303515--74303552 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
74303505 ATATTGGTAT
74303515 ATGAATGAAAA-TGA-TTGA
1 ATGAAT-AAAAGTGACTTGA
74303533 ATGAATAAAAGTGACTTGA
1 ATGAATAAAAGTGACTTGA
74303552 A
1 A
74303553 GGAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (19 bp):
ATGAATAAAAGTGACTTGA
Found at i:74303830 original size:4 final size:4
Alignment explanation
Indices: 74303807--74303876 Score: 59
Period size: 4 Copynumber: 17.5 Consensus size: 4
74303797 TAAATAAACA
* * * * *
74303807 AATG AGTG AATG AGTG AATG AATG GATG AATG GATG GATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
* * * *
74303855 GATA AATG AATT AATG ATTG AA
1 AATG AATG AATG AATG AATG AA
74303877 ATTGGGGCAC
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (4 bp):
AATG
Found at i:74303830 original size:12 final size:12
Alignment explanation
Indices: 74303808--74303865 Score: 73
Period size: 12 Copynumber: 4.8 Consensus size: 12
74303798 AAATAAACAA
*
74303808 ATGAGTGAAT-G
1 ATGAATGAATGG
74303819 AGTGAATGAATGG
1 A-TGAATGAATGG
*
74303832 ATGAATGGATGG
1 ATGAATGAATGG
74303844 ATGAATGAATGG
1 ATGAATGAATGG
*
74303856 ATAAATGAAT
1 ATGAATGAAT
74303866 TAATGATTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
11 1 0.02
12 38 0.93
13 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.33, T:0.26
Consensus pattern (12 bp):
ATGAATGAATGG
Found at i:74304868 original size:34 final size:34
Alignment explanation
Indices: 74304825--74304892 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
74304815 CGATGTACAC
74304825 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
1 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
74304859 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
1 ATTAATCAATTTCATCGATAAAAGAATAAACAAA
74304893 CACATTGGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.26
Consensus pattern (34 bp):
ATTAATCAATTTCATCGATAAAAGAATAAACAAA
Found at i:74305755 original size:3 final size:3
Alignment explanation
Indices: 74305747--74305778 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
74305737 ATTCGATCCT
74305747 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
74305779 TGATTTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:74307760 original size:56 final size:56
Alignment explanation
Indices: 74307693--74307803 Score: 222
Period size: 56 Copynumber: 2.0 Consensus size: 56
74307683 TAGATGGAAG
74307693 TCGAATGGTTGTTGTATGTAGATAGCATGCATGCTAATAATGTTTTTATTTTCTAT
1 TCGAATGGTTGTTGTATGTAGATAGCATGCATGCTAATAATGTTTTTATTTTCTAT
74307749 TCGAATGGTTGTTGTATGTAGATAGCATGCATGCTAATAATGTTTTTATTTTCTA
1 TCGAATGGTTGTTGTATGTAGATAGCATGCATGCTAATAATGTTTTTATTTTCTA
74307804 CTTAATATCT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.25, C:0.09, G:0.20, T:0.46
Consensus pattern (56 bp):
TCGAATGGTTGTTGTATGTAGATAGCATGCATGCTAATAATGTTTTTATTTTCTAT
Found at i:74308225 original size:69 final size:70
Alignment explanation
Indices: 74308093--74308225 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
74308083 TAGTTTATTA
* * * * *
74308093 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
74308158 CTTAG
66 CTTAG
*
74308163 CTAATTAATATGCTGTTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
74308226 GTTATGTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 35 0.61
70 22 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:74310075 original size:48 final size:48
Alignment explanation
Indices: 74310004--74310389 Score: 637
Period size: 48 Copynumber: 8.0 Consensus size: 48
74309994 CACAAGATTA
*
74310004 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
74310052 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
74310100 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
74310148 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
74310198 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
74310246 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
*
74310296 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * * *
74310344 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGGAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
74310390 GGAGGTGTGG
Statistics
Matches: 320, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
48 225 0.70
49 8 0.03
50 87 0.27
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:74310267 original size:146 final size:147
Alignment explanation
Indices: 74310004--74310389 Score: 645
Period size: 146 Copynumber: 2.6 Consensus size: 147
74309994 CACAAGATTA
74310004 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGT-AAAATATGTATGAGATATGTATATGTGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATGTATGAGATATGTATATGTGG
74310068 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
66 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
*
74310133 TGTG-AA-ATATGTATG
131 TGTGAAATATATATATG
* *
74310148 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA-ATATGTATGAGATATGTATATGTG
*
74310213 GTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTA
65 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
74310278 ATGTGAAATATATATATG
130 ATGTGAAATATATATATG
* *
74310296 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AAATATGTATGAGATACGTATATGTGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATGTATGAGATATGTATATGTGG
* * * *
74310360 TAAAGCCGAAGGGCTAGTGTGGAGTATGTA
66 TAAAGCCGAATGGCTAATGTGAAATATGTA
74310390 GGAGGTGTGG
Statistics
Matches: 226, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
144 35 0.15
145 3 0.01
146 141 0.62
147 4 0.02
148 43 0.19
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (147 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATGTATGAGATATGTATATGTGG
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
TGTGAAATATATATATG
Found at i:74310405 original size:98 final size:98
Alignment explanation
Indices: 74310004--74310380 Score: 668
Period size: 98 Copynumber: 3.9 Consensus size: 98
74309994 CACAAGATTA
*
74310004 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
74310069 AAAGCCGAATGGCTAATGTG-AA-ATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATATATATG
*
74310100 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
74310165 AAAGCCGAATGGCTAATGTGAAATATATATATG
66 AAAGCCGAATGGCTAATGTGAAATATATATATG
*
74310198 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
74310263 AAAGCCGAATGGCTAATGTGAAATATATATATG
66 AAAGCCGAATGGCTAATGTGAAATATATATATG
* *
74310296 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATACGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
74310361 AAAGCCGAAGGGCTAGTGTG
66 AAAGCCGAATGGCTAATGTG
74310381 GAGTATGTAG
Statistics
Matches: 271, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 83 0.31
97 2 0.01
98 186 0.69
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (98 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:74310575 original size:37 final size:37
Alignment explanation
Indices: 74310525--74310639 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
74310515 ACATGAAACT
74310525 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
74310562 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
* * * *
74310599 TGGAGAT-TTTATCCGGGTAAGACCCGATAACTTCGTG
1 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
74310636 TGGA
1 TGGA
74310640 GATTTCATCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 2 0.03
37 71 0.97
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:74312812 original size:27 final size:26
Alignment explanation
Indices: 74312782--74312855 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 26
74312772 CTAAATATAT
* *
74312782 ATTTTTTTTATTTTTAATCATATTTAC
1 ATTTTTTTTATTTTTAAT-ATAATCAC
*
74312809 ATTTTATTTTCAATTTTAATATAATCAC
1 ATTTT-TTTT-ATTTTTAATATAATCAC
74312837 -TTTTTATTATATTTTTAAT
1 ATTTTT-TT-TATTTTTAAT
74312856 TTGTGTATTG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
26 1 0.03
27 19 0.49
28 11 0.28
29 8 0.21
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (26 bp):
ATTTTTTTTATTTTTAATATAATCAC
Found at i:74312899 original size:41 final size:40
Alignment explanation
Indices: 74312838--74312923 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
74312828 TATAATCACT
* *
74312838 TTTTATTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
* * * * *
74312878 TTTTAGTATCATTTTTTATTTGTTTCTTATTTTAATATTTG
1 TTTTAGTAT-ATTTTTAATTTGTGTATTATTTTAAGAATTG
74312919 TTTTA
1 TTTTA
74312924 AATGTATTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.66
Consensus pattern (40 bp):
TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
Found at i:74313971 original size:56 final size:56
Alignment explanation
Indices: 74313885--74314004 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
74313875 ACAAGGGATG
74313885 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
74313941 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
74313997 ATGGGCAA
1 ATGGGCAA
74314005 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:74315275 original size:39 final size:39
Alignment explanation
Indices: 74315133--74315276 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 39
74315123 CGAATGATGT
* * *
74315133 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTA-AA
* *
74315173 CCGGACTAAGAT-CCGAAGGCATTGGTGCAAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
* *
74315212 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
*
74315253 -CGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74315277 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
39 24 0.27
40 55 0.62
41 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:74321818 original size:56 final size:56
Alignment explanation
Indices: 74321732--74321906 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
74321722 ACAAGGGATG
74321732 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
74321788 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
74321843 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
74321899 ATGGGCAA
1 ATGGGCAA
74321907 TAAACTAATA
Statistics
Matches: 117, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
55 55 0.47
56 62 0.53
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:74323165 original size:40 final size:40
Alignment explanation
Indices: 74323034--74323215 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
74323024 TCGAATGATG
* * * *
74323034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
74323074 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
74323112 TCCGGG-TGAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74323152 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74323193 -CCGGGCTATGT--CGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74323216 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 8, Indels: 18
0.83 0.05 0.12
Matches are distributed among these distances:
37 2 0.02
38 30 0.24
39 19 0.15
40 71 0.56
41 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74323169 original size:78 final size:79
Alignment explanation
Indices: 74323034--74323200 Score: 207
Period size: 78 Copynumber: 2.1 Consensus size: 79
74323024 TCGAATGATG
*
74323034 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCA-TT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
74323098 GTGCGAGTTACTAA
66 GTGCGAGTTACTAA
* * * **
74323112 TCCGGG-TGAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCT-AAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
74323174 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTA-A
*
74323192 ACCGGGCTA
1 TCCGGGCTA
74323201 TGTCGAAGGC
Statistics
Matches: 76, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
77 2 0.03
78 44 0.58
79 22 0.29
80 7 0.09
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAA
Found at i:74323222 original size:78 final size:76
Alignment explanation
Indices: 74323087--74323248 Score: 186
Period size: 78 Copynumber: 2.1 Consensus size: 76
74323077 GGACTAAGAT
* **
74323087 CCGAAGGCATTGTGCGAGTTACTAATCCGGGTGAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
1 CCGAAGGCATTGTGCGAGTTACTAAACCGGGTGAAGT-CCGAAGGCATTTGAACGAG-TAGCTAA
*
74323151 ATCCGGGTTAAGTC
64 ATCC-GGTTAAATC
*
74323165 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-ATGT-CGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCA-TTGTGCGAGTTACTA-AACCGGG-TGAAGTCCGAAGGCATTTGAACGAGTAGCTA
* *
74323228 TATCCGGTTAAATT
63 AATCCGGTTAAATC
74323242 CCGAAGG
1 CCGAAGG
74323249 TACGTGATTT
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
77 16 0.22
78 32 0.44
79 15 0.21
80 9 0.12
81 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (76 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGGTGAAGTCCGAAGGCATTTGAACGAGTAGCTAAAT
CCGGTTAAATC
Found at i:74325058 original size:32 final size:32
Alignment explanation
Indices: 74325022--74325086 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
74325012 TGTACGCATT
74325022 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74325054 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74325086 T
1 T
74325087 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:74326596 original size:26 final size:26
Alignment explanation
Indices: 74326567--74326616 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
74326557 TACAGTTTTA
74326567 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
74326593 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
74326617 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:74333104 original size:32 final size:32
Alignment explanation
Indices: 74333068--74333132 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
74333058 TGTATGCATT
*
74333068 TTAGCATTTTAGTAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74333100 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74333132 T
1 T
74333133 GGTAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:74334634 original size:25 final size:26
Alignment explanation
Indices: 74334606--74334657 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
74334596 ATTTACAGTT
74334606 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
74334631 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
74334657 T
1 T
74334658 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:74335851 original size:41 final size:40
Alignment explanation
Indices: 74335778--74335863 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
74335768 TATAATCACT
* *
74335778 TTTTATTATATTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
* * * * *
74335818 TTTTAGTATCATTTTTTATTTGTTTCTTATTTTAATATTTG
1 TTTTAGTAT-ATTTTTAATTTGTGTATTATTTTAAGAATTG
74335859 TTTTA
1 TTTTA
74335864 AATGTATTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.66
Consensus pattern (40 bp):
TTTTAGTATATTTTTAATTTGTGTATTATTTTAAGAATTG
Found at i:74337735 original size:34 final size:34
Alignment explanation
Indices: 74337692--74337756 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
74337682 GAACTACAAT
74337692 TCTATTTGACAGTGATTAGAATAAGGTTTTTTAA
1 TCTATTTGACAGTGATTAGAATAAGGTTTTTTAA
74337726 TCTATTTGACAGTGATTAGAATAAGGTTTTT
1 TCTATTTGACAGTGATTAGAATAAGGTTTTT
74337757 CAACCTCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.31, C:0.06, G:0.18, T:0.45
Consensus pattern (34 bp):
TCTATTTGACAGTGATTAGAATAAGGTTTTTTAA
Done.