Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 225 of 332
Found at i:74674802 original size:15 final size:16
Alignment explanation
Indices: 74674764--74674800 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
74674754 GAAAATTTAT
*
74674764 TAAAAAAT-AATAATG
1 TAAAAAATAAATAATA
74674779 TAAAAAATAAATAATA
1 TAAAAAATAAATAATA
74674795 TAAAAA
1 TAAAAA
74674801 TATATTTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAATAAATAATA
Found at i:74684969 original size:68 final size:68
Alignment explanation
Indices: 74684891--74685026 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
74684881 ATGACATGAT
74684891 AATAGAATACCAAAAAGAAAATGTAATATAATTACATTGATTAGCCTCTATATACTAATAGAACT
1 AATAGAATACCAAAAAGAAAATGTAATATAATTACATTGATTAGCCTCTATATACTAATAGAACT
74684956 GCA
66 GCA
74684959 AATAGAATACCAAAAAGAAAATGTAATATAATTACATTGATTAGCCTCTATATACTAATAGAACT
1 AATAGAATACCAAAAAGAAAATGTAATATAATTACATTGATTAGCCTCTATATACTAATAGAACT
74685024 GCA
66 GCA
74685027 TTGTTTTTCT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (68 bp):
AATAGAATACCAAAAAGAAAATGTAATATAATTACATTGATTAGCCTCTATATACTAATAGAACT
GCA
Found at i:74692099 original size:27 final size:25
Alignment explanation
Indices: 74692056--74692108 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
74692046 TATGCTTCGT
*
74692056 ATTTTTTTGTTTTTTTCTCAATTAA
1 ATTTTTTTGTTTTTTTCACAATTAA
* *
74692081 ATTTTATTTTTTTTGTTTCACACTTAA
1 ATTTT-TTTGTTTT-TTTCACAATTAA
74692108 A
1 A
74692109 CTTTGATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 7 0.30
27 11 0.48
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.64
Consensus pattern (25 bp):
ATTTTTTTGTTTTTTTCACAATTAA
Found at i:74694520 original size:23 final size:23
Alignment explanation
Indices: 74694469--74694520 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
74694459 ATACTAATTA
* *
74694469 GAAGAAGATCTAAGGGAGCACTC
1 GAAGAAGATCTAAGAGAACACTC
74694492 -ATAGAAGAT-TGAAGAGAACACTC
1 GA-AGAAGATCT-AAGAGAACACTC
74694515 GAAGAA
1 GAAGAA
74694521 CGCCATCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
22 2 0.08
23 21 0.88
24 1 0.04
ACGTcount: A:0.46, C:0.13, G:0.27, T:0.13
Consensus pattern (23 bp):
GAAGAAGATCTAAGAGAACACTC
Found at i:74710303 original size:15 final size:17
Alignment explanation
Indices: 74710274--74710306 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
74710264 TAGTTTTTCA
74710274 TTTTTCATTTCTCTTTT
1 TTTTTCATTTCTCTTTT
74710291 TTTTTCATTTCT-TTTT
1 TTTTTCATTTCTCTTTT
74710307 ATTGTAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCATTTCTCTTTT
Found at i:74716020 original size:16 final size:16
Alignment explanation
Indices: 74715994--74716065 Score: 81
Period size: 16 Copynumber: 4.5 Consensus size: 16
74715984 TTTGGTTCAG
*
74715994 TGTAATGGAATAGAGC
1 TGTAATAGAATAGAGC
* *
74716010 TATAATAGAATAGAAC
1 TGTAATAGAATAGAGC
* *
74716026 TGTAATGGAATAGAGT
1 TGTAATAGAATAGAGC
**
74716042 TGTAATAGAATAGAAT
1 TGTAATAGAATAGAGC
74716058 TGTAATAG
1 TGTAATAG
74716066 CAATTATAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (16 bp):
TGTAATAGAATAGAGC
Found at i:74716035 original size:32 final size:32
Alignment explanation
Indices: 74715994--74716063 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
74715984 TTTGGTTCAG
74715994 TGTAATGGAATAGAGCTATAATAGAATAGAAC
1 TGTAATGGAATAGAGCTATAATAGAATAGAAC
* * *
74716026 TGTAATGGAATAGAGTTGTAATAGAATAGAAT
1 TGTAATGGAATAGAGCTATAATAGAATAGAAC
74716058 TGTAAT
1 TGTAAT
74716064 AGCAATTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.30
Consensus pattern (32 bp):
TGTAATGGAATAGAGCTATAATAGAATAGAAC
Found at i:74716108 original size:46 final size:44
Alignment explanation
Indices: 74716049--74716137 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
74716039 AGTTGTAATA
*
74716049 GAATAGAATTGTAATAGCAATTATAAT-TGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATAG-AATTAT--TGTGTTTGGTTGAATGGAATG
* *
74716095 GAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGGAAT
1 GAATAGAACTGTAATAGAATTATTGTGTTTGGTTGAATGGAAT
74716138 AGAGTTGTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 1 0.03
44 18 0.46
45 4 0.10
46 16 0.41
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (44 bp):
GAATAGAACTGTAATAGAATTATTGTGTTTGGTTGAATGGAATG
Found at i:74716338 original size:21 final size:21
Alignment explanation
Indices: 74716308--74716395 Score: 60
Period size: 21 Copynumber: 4.3 Consensus size: 21
74716298 TTATTATTAA
*
74716308 ATATACTTTAACAATAATAAT
1 ATATAATTTAACAATAATAAT
*
74716329 ATATAATTT---AATAATATT
1 ATATAATTTAACAATAATAAT
* * *
74716347 CT-TAATATAACAATTAATAAA
1 ATATAATTTAACAA-TAATAAT
* *
74716368 ATATGAA-TTAATAAAAATAAT
1 ATAT-AATTTAACAATAATAAT
74716389 ATATAAT
1 ATATAAT
74716396 ATTACGAAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 14
0.66 0.15 0.19
Matches are distributed among these distances:
17 5 0.10
18 9 0.18
20 4 0.08
21 23 0.47
22 6 0.12
23 2 0.04
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.39
Consensus pattern (21 bp):
ATATAATTTAACAATAATAAT
Found at i:74724926 original size:43 final size:43
Alignment explanation
Indices: 74724865--74725040 Score: 280
Period size: 43 Copynumber: 4.1 Consensus size: 43
74724855 TTAAATCCCA
* *
74724865 CAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* * * *
74724908 CAGGCTTCGTGCTGGTGATGTGTATTTGGGCTTTCGTGCCTAG
1 CAGGCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
74724951 CAGGCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* *
74724994 CAGGCTTCATGCCGGTGATGTGTATTCGGGCCTTTGTGCTTAG
1 CAGGCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
74725037 CAGG
1 CAGG
74725041 TGTAGCACCC
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 125 1.00
ACGTcount: A:0.11, C:0.22, G:0.34, T:0.33
Consensus pattern (43 bp):
CAGGCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
Found at i:74726005 original size:137 final size:137
Alignment explanation
Indices: 74725759--74726045 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
74725749 CATTGGGCCT
**
74725759 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
*
74725824 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGACCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
74725889 CATATGC
131 CATATGC
*
74725896 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
*
74725961 AGCCCCTTATTCAGATAACAGTATGACCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGACCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
74726026 CATATGC
131 CATATGC
74726033 AAGCCCATTTGGG
1 AAGCCCATTTGGG
74726046 GAGTGTGACA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGACCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:74728596 original size:98 final size:96
Alignment explanation
Indices: 74728505--74729194 Score: 1103
Period size: 98 Copynumber: 7.0 Consensus size: 96
74728495 TGAACATGCG
*** *
74728505 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGG
74728570 CCGAATGGCCAATGTGATGAATGTGAACCCGTATATA
62 CCGAATGGCCAATGTGATGAATGTGAA-CC-TATATA
74728607 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
74728672 ATGGCCAATGTGATGAATGTGAACCTGTATATA
66 ATGGCCAATGTGATGAATGTGAACC--TATATA
*
74728705 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
74728770 ATGGCCAATGTGATGAATGTGAACCTGTATATA
66 ATGGCCAATGTGATGAATGTGAACC--TATATA
*
74728803 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
74728868 ATGGCCAATGTGATGAATGTGAACCCGTATATA
66 ATGGCCAATGTGATGAATGTGAA-CC-TATATA
74728901 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
74728966 ATGGCCAATGTGATGAATGTGAACCCGTATATA
66 ATGGCCAATGTGATGAATGTGAA-CC-TATATA
74728999 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
74729064 ATGGCCAATGTGATGAATGTGAACCTGTATATA
66 ATGGCCAATGTGATGAATGTGAACC--TATATA
* * * * *
74729097 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
* * *
74729162 ATGGCCAATGTGATG-ATGTCAACGTGTATA
66 ATGGCCAATGTGATGAATGTGAACCTATATA
74729192 TAT
1 TAT
74729195 ATATTGTGGC
Statistics
Matches: 571, Mismatches: 14, Indels: 13
0.95 0.02 0.02
Matches are distributed among these distances:
95 8 0.01
97 11 0.02
98 508 0.89
99 2 0.00
101 1 0.00
102 41 0.07
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (96 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACCTATATA
Found at i:74728636 original size:24 final size:24
Alignment explanation
Indices: 74728608--74728683 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
74728598 CCGTATATAT
74728608 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
74728632 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
74728655 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
74728679 ATGTG
1 ATGTG
74728684 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:74728930 original size:24 final size:24
Alignment explanation
Indices: 74728902--74728977 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
74728892 CCGTATATAT
74728902 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
74728926 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
74728949 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
74728973 ATGTG
1 ATGTG
74728978 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:74729015 original size:294 final size:294
Alignment explanation
Indices: 74728505--74729196 Score: 1224
Period size: 294 Copynumber: 2.3 Consensus size: 294
74728495 TGAACATGCG
* ** *
74728505 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGG
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGG
74728570 CCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATG
62 CCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATG
*
74728635 TGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGT
127 TGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGT
74728700 ATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAG
192 ATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAG
74728765 GCCGAATGGCCAATGTGATGAATGTGAACCTGTATATA
257 GCCGAATGGCCAATGTGATGAATGTGAACCTGTATATA
*
74728803 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
74728868 ATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGAT
66 ATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGAT
74728933 GAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATAT
131 GAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATAT
*
74728998 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
196 ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
74729063 AATGGCCAATGTGATGAATGTGAACCTGTATATA
261 AATGGCCAATGTGATGAATGTGAACCTGTATATA
* * *
74729097 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
* **
74729162 ATGGCCAATGTGATG-ATGTCAACGTGTATATATAT
66 ATGGCCAATGTGATGAATGTGAACCCGTATATATAT
74729197 ATTGTGGCCA
Statistics
Matches: 380, Mismatches: 14, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
293 17 0.04
294 322 0.85
297 1 0.00
298 40 0.11
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (294 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGAT
GAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATAT
ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACCTGTATATA
Found at i:74729028 original size:24 final size:24
Alignment explanation
Indices: 74729000--74729075 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
74728990 CCGTATATAT
74729000 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
74729024 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
74729047 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
74729071 ATGTG
1 ATGTG
74729076 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:74729474 original size:37 final size:37
Alignment explanation
Indices: 74729329--74729473 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
74729319 GGAAATATAT
*
74729329 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
74729366 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
74729403 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* **
74729440 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
74729474 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:74732091 original size:25 final size:26
Alignment explanation
Indices: 74732057--74732163 Score: 184
Period size: 25 Copynumber: 4.2 Consensus size: 26
74732047 CATGAAATTC
74732057 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
74732082 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
74732107 TTATCATGGAACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCCA
*
74732132 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
74732158 TTATCA
1 TTATCA
74732164 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
25 57 0.72
26 22 0.28
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:74732144 original size:51 final size:50
Alignment explanation
Indices: 74732057--74732163 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 50
74732047 CATGAAATTC
74732057 TTATCATGAACATTTACCTAACCCATTATCATGAACATTTACCTAACCCA
1 TTATCATGAACATTTACCTAACCCATTATCATGAACATTTACCTAACCCA
*
74732107 TTATCATGGAACATTTACCTAA-CCATTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCATTATCAT-GAACATTTACCTAACCCA
74732158 TTATCA
1 TTATCA
74732164 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
50 17 0.31
51 37 0.69
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (50 bp):
TTATCATGAACATTTACCTAACCCATTATCATGAACATTTACCTAACCCA
Found at i:74736167 original size:137 final size:137
Alignment explanation
Indices: 74735921--74736207 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
74735911 CATTGGGCCT
**
74735921 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
74735986 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
74736051 CATATGC
131 CATATGC
* *
74736058 AAGCCCATTTGGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
*
74736123 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
74736188 CATATGC
131 CATATGC
74736195 AAGCCCATTTGGG
1 AAGCCCATTTGGG
74736208 GAGACTATTC
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAAGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:74738038 original size:26 final size:26
Alignment explanation
Indices: 74738002--74738111 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
74737992 CATGAAATTC
74738002 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
74738028 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
74738054 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
74738080 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
74738106 TTATCA
1 TTATCA
74738112 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:74743304 original size:18 final size:19
Alignment explanation
Indices: 74743281--74743336 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
74743271 TCTAAACTTT
74743281 CTATTTTTAAAAAAAAT-A
1 CTATTTTTAAAAAAAATAA
**
74743299 CTATTTTTCTTAAAAAATAA
1 CTATTTTT-AAAAAAAATAA
74743319 CTATATTTTAAAAAAAAT
1 CTAT-TTTTAAAAAAAAT
74743337 CAAAGTTCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 8 0.26
19 7 0.23
20 12 0.39
21 4 0.13
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (19 bp):
CTATTTTTAAAAAAAATAA
Found at i:74743325 original size:22 final size:21
Alignment explanation
Indices: 74743287--74743336 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 21
74743277 CTTTCTATTT
74743287 TTAAAAAAAATACTATTTTTC
1 TTAAAAAAAATACTATTTTTC
* *
74743308 TTAAAAAATA-ACTA-TATT-
1 TTAAAAAAAATACTATTTTTC
74743326 TTAAAAAAAAT
1 TTAAAAAAAAT
74743337 CAAAGTTCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 9 0.36
19 3 0.12
20 4 0.16
21 9 0.36
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAAAAAAATACTATTTTTC
Found at i:74743720 original size:138 final size:138
Alignment explanation
Indices: 74743463--74743735 Score: 342
Period size: 139 Copynumber: 2.0 Consensus size: 138
74743453 TCTTTTAAAA
* **
74743463 AAATCACTATTTTTATTAAAAATCAAAGTTTTATTTCGAATAGTTGAAAAAGATGAAAACTTTTT
1 AAATAACTATTTTTATTAAAAATCAAAGTTTTATTTCGAATAGTTGAAAAAGATGAAAACAATTT
** * *
74743528 AAATTTTTTTTTTAAACTTTTCCTTTAAAATGACTAAAAATAGATCTTTATTTTTAAAAATCTAA
66 -AATTTTAATTTTAAACATTTCCTTTAAAATAACTAAAAATAGATCTTTATTTTTAAAAATCTAA
74743593 ACTTTTTTT
130 ACTTTTTTT
* *
74743602 AAATAACTATTTTTCTTAAAAATCAAA-TCTTTATTTTGAAATAGTTGAAAAAGAT-AAAA-AAT
1 AAATAACTATTTTTATTAAAAATCAAAGT-TTTATTTCG-AATAGTTGAAAAAGATGAAAACAAT
* *
74743664 TT-ATTTTAAAATTTTAAA-ATTTCCTTTTAAATAACTAAAAA-ATGATTTTTTATTTTTAAAAA
64 TTAATTTT--AATTTTAAACATTTCCTTTAAAATAACTAAAAATA-GA-TCTTTATTTTTAAAAA
74743726 TCTAAACTTT
125 TCTAAACTTT
74743736 CGTTTTTTTT
Statistics
Matches: 117, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
136 6 0.05
137 22 0.19
138 36 0.31
139 37 0.32
140 16 0.14
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (138 bp):
AAATAACTATTTTTATTAAAAATCAAAGTTTTATTTCGAATAGTTGAAAAAGATGAAAACAATTT
AATTTTAATTTTAAACATTTCCTTTAAAATAACTAAAAATAGATCTTTATTTTTAAAAATCTAAA
CTTTTTTT
Found at i:74748447 original size:16 final size:16
Alignment explanation
Indices: 74748414--74748460 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
74748404 ATGTATCGGC
* *
74748414 AAAAGCTGAAATGCTG
1 AAAAGCCGAAAAGCTG
*
74748430 AAAAGCCGAAAAGTTG
1 AAAAGCCGAAAAGCTG
74748446 AAATA-CCGAAAAGCT
1 AAA-AGCCGAAAAGCT
74748461 TGGTTACGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 25 0.96
17 1 0.04
ACGTcount: A:0.49, C:0.15, G:0.21, T:0.15
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:74748447 original size:24 final size:24
Alignment explanation
Indices: 74748414--74748459 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
74748404 ATGTATCGGC
* *
74748414 AAAAGCTGAAATGCTGAAAAGCCG
1 AAAAGCTGAAATACCGAAAAGCCG
*
74748438 AAAAGTTGAAATACCGAAAAGC
1 AAAAGCTGAAATACCGAAAAGC
74748460 TTGGTTACGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.15, G:0.22, T:0.13
Consensus pattern (24 bp):
AAAAGCTGAAATACCGAAAAGCCG
Found at i:74748764 original size:28 final size:29
Alignment explanation
Indices: 74748654--74748768 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
74748644 GTGAGCATGA
* *
74748654 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
74748682 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
74748711 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
74748740 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
74748768 A
1 A
74748769 GATACAGGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:74748776 original size:57 final size:58
Alignment explanation
Indices: 74748667--74748777 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
74748657 TGAATGTGAC
* *
74748667 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
74748725 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
74748778 ATGTGAAGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:74752373 original size:41 final size:41
Alignment explanation
Indices: 74752313--74752460 Score: 149
Period size: 41 Copynumber: 3.6 Consensus size: 41
74752303 GAGCTTGGTC
74752313 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * * * *
74752354 TCAAAGGGCTTTAGAGCCAGTG-TCATAACTGGACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * * *
74752394 CCGAAGGGCCTTCGAGCCAATGGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
74752435 TCGAAGGGCTTTTGAGCCAGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
74752461 GAATCGGGCT
Statistics
Matches: 84, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
39 4 0.05
40 32 0.38
41 45 0.54
43 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:74752472 original size:41 final size:41
Alignment explanation
Indices: 74752302--74752472 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 41
74752292 GGTCTAAATC
*
74752302 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
* * * * * *
74752343 CGAACTTAGTTTCAAAGGGCTTTAGAGCCAGTG-TCATAACT
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA-T
* * * * * * *
74752384 GGA-CTTAGT-TCCGAAGGGCCTTCGAGCCAATGGT-CTAAT
1 CGAGCTTGGTCT-CGAAGGGCTTTTGAGCCAGTGCTAATAAT
*
74752423 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAAGAAT
1 -CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
*
74752465 CGGGCTTG
1 CGAGCTTG
74752473 ATTCCGAAGG
Statistics
Matches: 101, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
39 2 0.02
40 33 0.33
41 62 0.61
42 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAAT
Found at i:74758664 original size:29 final size:29
Alignment explanation
Indices: 74758631--74758687 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
74758621 AGTACCTAAA
*
74758631 TATAATACCGGCACAAAGTACCTAATAAT
1 TATAACACCGGCACAAAGTACCTAATAAT
** *
74758660 TATAACACCGGTTCAAAGTACCTGATAA
1 TATAACACCGGCACAAAGTACCTAATAA
74758688 CTGTAATCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25
Consensus pattern (29 bp):
TATAACACCGGCACAAAGTACCTAATAAT
Found at i:74759279 original size:53 final size:53
Alignment explanation
Indices: 74759100--74759272 Score: 177
Period size: 55 Copynumber: 3.2 Consensus size: 53
74759090 CACGCCAGAA
* *
74759100 AAAAAGAAGCCTTTGTGGCGATCTACGAAAAAGAAGCCTTTGTGGTGATCTATG
1 AAAAAGAAGCCTATGTGGC-ATCTAAGAAAAAGAAGCCTTTGTGGTGATCTATG
* * * * * *
74759154 AAAAAAAAAGCCTATGTGGTAATTTATGAAAAAGAAGCCTTTGTGGCGACCTAT-
1 -AAAAAGAAGCCTATGTGG-CATCTAAGAAAAAGAAGCCTTTGTGGTGATCTATG
* * * * *
74759208 AAAAATGAAGCCTCTGTGGCATCTAAGAATAGGAAACCTTTGTGGTAATCTATG
1 AAAAA-GAAGCCTATGTGGCATCTAAGAAAAAGAAGCCTTTGTGGTGATCTATG
*
74759262 AAAATGAAGCC
1 AAAAAGAAGCC
74759273 CTTGTGGTGA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
53 36 0.38
54 15 0.16
55 45 0.47
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (53 bp):
AAAAAGAAGCCTATGTGGCATCTAAGAAAAAGAAGCCTTTGTGGTGATCTATG
Found at i:74759280 original size:27 final size:27
Alignment explanation
Indices: 74759100--74759282 Score: 181
Period size: 27 Copynumber: 6.8 Consensus size: 27
74759090 CACGCCAGAA
* *
74759100 AAAAAGAAGCCTTTGTGGCGATCTACG
1 AAAAAGAAGCCTTTGTGGTGATCTATG
74759127 AAAAAGAAGCCTTTGTGGTGATCTATG
1 AAAAAGAAGCCTTTGTGGTGATCTATG
* * * *
74759154 AAAAAAAAAGCCTATGTGGTAATTTATG
1 -AAAAAGAAGCCTTTGTGGTGATCTATG
* *
74759182 AAAAAGAAGCCTTTGTGGCGACCTAT-
1 AAAAAGAAGCCTTTGTGGTGATCTATG
* * *
74759208 AAAAATGAAGCCTCTGTGG-CATCTAAG
1 AAAAA-GAAGCCTTTGTGGTGATCTATG
* * * *
74759235 AATAGGAAACCTTTGTGGTAATCTATG
1 AAAAAGAAGCCTTTGTGGTGATCTATG
* *
74759262 AAAATGAAGCCCTTGTGGTGA
1 AAAAAGAAGCCTTTGTGGTGA
74759283 CTTTTGAGGG
Statistics
Matches: 125, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
26 20 0.16
27 82 0.66
28 23 0.18
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.26
Consensus pattern (27 bp):
AAAAAGAAGCCTTTGTGGTGATCTATG
Found at i:74766056 original size:281 final size:281
Alignment explanation
Indices: 74765548--74766114 Score: 1010
Period size: 281 Copynumber: 2.0 Consensus size: 281
74765538 ACAAGACGAT
*
74765548 AATGCTATAACATAACTTGATTTTCAAGGGAAATAAAATTAGAATTGGATACAGACATTGATTTA
1 AATGCTATAACATAACTTGATTTTCAAGGGAAACAAAATTAGAATTGGATACAGACATTGATTTA
74765613 GAAGTAAGTTTGACACACTTTTTACTAGAATCTGAACCACAACTTGATGGGTAAACTGGTCTACT
66 GAAGTAAGTTTGACACACTTTTTACTAGAATCTGAACCACAACTTGATGGGTAAACTGGTCTACT
* *
74765678 TGGAAGATTCTTTGCAGATATAGACCACCATGCATATTATCACTGCCAATCACCTTTCCCGAATC
131 TAGAAGATTCTTTGCAGATATAGACCACCATGCATATTATCACTGCCAATCACCTTCCCCGAATC
* *
74765743 CACTGCCTAAAAATAAAAGCAATTAGAATGAAATTTAGCAACACAATTTATGTCTTGGGTAAGTT
196 CACTGCCTAAAAATAAAAACAATTAGAATGAAATTTAGCAACACAATTTATGTCTCGGGTAAGTT
*
74765808 GGCTTATGGAAAGTAAATTGC
261 GACTTATGGAAAGTAAATTGC
*
74765829 AATGTTATAACATAACTTGATTTTCAAGGGAAACAAAATTAGAATTGGATACA-AGCATTGATTT
1 AATGCTATAACATAACTTGATTTTCAAGGGAAACAAAATTAGAATTGGATACAGA-CATTGATTT
* * * * *
74765893 GGAAGTAAGTTTGCCACACTTTTTACTAGAATCTGAACCATAACTTGATGGGTGAACTTGTCTAC
65 AGAAGTAAGTTTGACACACTTTTTACTAGAATCTGAACCACAACTTGATGGGTAAACTGGTCTAC
74765958 TTAGAAGATTCTTTGCAGATATAGACCACCATGCATATTATCACTGCCAATCACCTTCCCCGAAT
130 TTAGAAGATTCTTTGCAGATATAGACCACCATGCATATTATCACTGCCAATCACCTTCCCCGAAT
74766023 CCACTGCCTAAAAATAAAAACAATTAGAATGAAATTTAGCAACACAATTTATGTCTCGGGTAAGT
195 CCACTGCCTAAAAATAAAAACAATTAGAATGAAATTTAGCAACACAATTTATGTCTCGGGTAAGT
74766088 TGACTTATGGAAAGTAAATTGC
260 TGACTTATGGAAAGTAAATTGC
74766110 AATGC
1 AATGC
74766115 AATTTAGGGA
Statistics
Matches: 272, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
280 1 0.00
281 271 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (281 bp):
AATGCTATAACATAACTTGATTTTCAAGGGAAACAAAATTAGAATTGGATACAGACATTGATTTA
GAAGTAAGTTTGACACACTTTTTACTAGAATCTGAACCACAACTTGATGGGTAAACTGGTCTACT
TAGAAGATTCTTTGCAGATATAGACCACCATGCATATTATCACTGCCAATCACCTTCCCCGAATC
CACTGCCTAAAAATAAAAACAATTAGAATGAAATTTAGCAACACAATTTATGTCTCGGGTAAGTT
GACTTATGGAAAGTAAATTGC
Found at i:74767088 original size:22 final size:22
Alignment explanation
Indices: 74767063--74767106 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
74767053 CGTGTTTGAT
74767063 AATTGTTGAAGA-AAAAGAGAAG
1 AATT-TTGAAGACAAAAGAGAAG
* *
74767085 AATTTTGAGGACAAAAGTGAAG
1 AATTTTGAAGACAAAAGAGAAG
74767107 GGAAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.50, C:0.02, G:0.27, T:0.20
Consensus pattern (22 bp):
AATTTTGAAGACAAAAGAGAAG
Found at i:74770182 original size:23 final size:20
Alignment explanation
Indices: 74770155--74770216 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 20
74770145 TTTGCCGATT
74770155 AGGCACTTTATGTGTCGTATATC
1 AGGCAC-TTATGTGTC--ATATC
* * *
74770178 AGGCACCTCATGTATCATTTC
1 AGGCA-CTTATGTGTCATATC
74770199 AGGCACTTATGTGTCATA
1 AGGCACTTATGTGTCATA
74770217 AACTGATCAG
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 10 0.31
21 9 0.28
23 12 0.38
24 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (20 bp):
AGGCACTTATGTGTCATATC
Found at i:74775790 original size:26 final size:26
Alignment explanation
Indices: 74775756--74775820 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
74775746 TGGCTATCCA
*
74775756 GAGC-TCCTGATTAAAGGCTCTTCGT
1 GAGCTTCCTGATTAAAAGCTCTTCGT
* *
74775781 GAGCTTCCTGATTAAAAGTTCTTTGT
1 GAGCTTCCTGATTAAAAGCTCTTCGT
* *
74775807 GAACTTCATGATTA
1 GAGCTTCCTGATTA
74775821 TAGATTTCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 4 0.12
26 30 0.88
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAAGCTCTTCGT
Found at i:74777112 original size:28 final size:28
Alignment explanation
Indices: 74777069--74777124 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
74777059 AGATTTTGCA
74777069 AAAAATTCTCTAAGTACCCGGCTTAGTC
1 AAAAATTCTCTAAGTACCCGGCTTAGTC
*
74777097 AAAAATTCTCTGAGTACCCGGCTTAGTC
1 AAAAATTCTCTAAGTACCCGGCTTAGTC
74777125 CAGACTCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
AAAAATTCTCTAAGTACCCGGCTTAGTC
Found at i:74785565 original size:53 final size:53
Alignment explanation
Indices: 74785485--74785590 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
74785475 TTTGACATTG
*
74785485 ACATGATATTATGTGTCTAACTTATTTGACTGAGTGAATGTGATAAATAGATT
1 ACATGATATTATGTGTCTAACTTATTTGACTAAGTGAATGTGATAAATAGATT
74785538 ACATGATATTATGTGTCTAACTTATTTGACTAAGTGAATGTGATAAATAGATT
1 ACATGATATTATGTGTCTAACTTATTTGACTAAGTGAATGTGATAAATAGATT
74785591 TACTCAAATT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.40
Consensus pattern (53 bp):
ACATGATATTATGTGTCTAACTTATTTGACTAAGTGAATGTGATAAATAGATT
Found at i:74791113 original size:16 final size:17
Alignment explanation
Indices: 74791092--74791125 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
74791082 AGTGAAAAAA
*
74791092 TTAA-TTTTCAATTGAT
1 TTAATTTTTCAATAGAT
74791108 TTAATTTTTCAATAGAT
1 TTAATTTTTCAATAGAT
74791125 T
1 T
74791126 ACCAAAACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (17 bp):
TTAATTTTTCAATAGAT
Found at i:74791792 original size:10 final size:10
Alignment explanation
Indices: 74791765--74791857 Score: 59
Period size: 10 Copynumber: 9.3 Consensus size: 10
74791755 GAATCATTCT
*
74791765 AAAATTCTAA
1 AAAATTATAA
74791775 AAAA--ATAA
1 AAAATTATAA
74791783 AAAATTAT-A
1 AAAATTATAA
74791792 AAAATTATAA
1 AAAATTATAA
74791802 GAAAATTATTAAAA
1 -AAAATTA-T--AA
*
74791816 AAAATTAGAA
1 AAAATTATAA
*** *
74791826 CTTATTATCA
1 AAAATTATAA
*
74791836 AAATTTAT-A
1 AAAATTATAA
74791845 AAAATTATAA
1 AAAATTATAA
74791855 AAA
1 AAA
74791858 CCATTAAAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
8 7 0.11
9 17 0.27
10 22 0.35
11 7 0.11
12 1 0.02
13 7 0.11
14 2 0.03
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (10 bp):
AAAATTATAA
Found at i:74792188 original size:9 final size:9
Alignment explanation
Indices: 74792171--74792207 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
74792161 TGAGTTTTGG
74792171 AATTCGAAT
1 AATTCGAAT
*
74792180 AACTCGAAT
1 AATTCGAAT
*
74792189 AATTCAAAT
1 AATTCGAAT
74792198 AATTCGAAT
1 AATTCGAAT
74792207 A
1 A
74792208 GTAAAGTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:74798705 original size:5 final size:6
Alignment explanation
Indices: 74798689--74798714 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74798679 TGTTGCTTTG
74798689 ATTTTT ATTTTT ATTTTT ATTTTT AT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT
74798715 AGTTTAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:74799686 original size:275 final size:276
Alignment explanation
Indices: 74799195--74799753 Score: 915
Period size: 275 Copynumber: 2.0 Consensus size: 276
74799185 ACAATGATTG
* * *
74799195 ATTTAAAATAGAGGTGAAAATTATCTTTCAACTTAAGTAGAAAAGTTACATAATCCTCTTATTTA
1 ATTTAAAATAGAGGTGAAAAATATATTTCAACTTAAGTAAAAAAGTTACATAATCCTCTTATTTA
* * * *
74799260 TCAAGATTATCAAATATCTTTTTATTTAAATCTCATGTGATAATTACTTAATAAATGAGCTATCA
66 TCAAGACTATCAAATATCCTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGCTATCA
* * *
74799325 CGTCAGTTTTAAGTAAGCTAAACGGGCCATTAGTACAATATACAAACGGAATTACAAATCCAATC
131 CGCCAGTTTCAAGTAAACTAAACGGGCCATTAGTACAATATACAAACGGAATTACAAATCCAATC
* *
74799390 AATAAATCTATATCATGACCAAAATCAAACTATTACAAGTAA-AACTTCTTATCACAAGGTTATA
196 AATAAATCTATATCATGACCAAAATAAAACTATTACAAGTAAGAA-TTCTTATCACAAGATTATA
*
74799454 CGTG-TGAAAATCATAT
260 CGTGTTAAAAATCATAT
*
74799470 ATTTAAAATATAGGTGAAAAATATATTTCAACTTAAGTAAAAAAGTTACATAATCCTCTTATTTA
1 ATTTAAAATAGAGGTGAAAAATATATTTCAACTTAAGTAAAAAAGTTACATAATCCTCTTATTTA
74799535 TCAAGACTATCAAATATCCTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGCTATCA
66 TCAAGACTATCAAATATCCTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGCTATCA
* * *
74799600 TGCCGGTTTCAAGTAAACTAAACGGGCCATTAGTACAATATACAAATGGAATTACAAATCCAATC
131 CGCCAGTTTCAAGTAAACTAAACGGGCCATTAGTACAATATACAAACGGAATTACAAATCCAATC
* *
74799665 AATAAATCTATATCATGACCAAAATAAAACTATTACAAGTAAGAATTTTTATCACAAGATTATGC
196 AATAAATCTATATCATGACCAAAATAAAACTATTACAAGTAAGAATTCTTATCACAAGATTATAC
*
74799730 GTGTTAAAAATCATGT
261 GTGTTAAAAATCATAT
74799746 ATTTAAAA
1 ATTTAAAA
74799754 AACATGTGAA
Statistics
Matches: 262, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
275 242 0.92
276 20 0.08
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (276 bp):
ATTTAAAATAGAGGTGAAAAATATATTTCAACTTAAGTAAAAAAGTTACATAATCCTCTTATTTA
TCAAGACTATCAAATATCCTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGCTATCA
CGCCAGTTTCAAGTAAACTAAACGGGCCATTAGTACAATATACAAACGGAATTACAAATCCAATC
AATAAATCTATATCATGACCAAAATAAAACTATTACAAGTAAGAATTCTTATCACAAGATTATAC
GTGTTAAAAATCATAT
Found at i:74801910 original size:21 final size:22
Alignment explanation
Indices: 74801871--74801911 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
74801861 ACAATTATTT
*
74801871 TTTATTTAATAATATCATTTAC
1 TTTATTTAATAATAACATTTAC
*
74801893 TTTATTT-GTAATAACATTT
1 TTTATTTAATAATAACATTT
74801912 TTGGTACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTATTTAATAATAACATTTAC
Found at i:74814756 original size:21 final size:22
Alignment explanation
Indices: 74814730--74814776 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
74814720 CTCTGCTCAA
*
74814730 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
74814751 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
74814773 ACTC
1 ACTC
74814777 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:74825439 original size:46 final size:46
Alignment explanation
Indices: 74825336--74825551 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 46
74825326 GGGTAAGTTA
*
74825336 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGG
* *
74825382 CTGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGG
* * *** * * *
74825428 CCGATGCATGTCCCAGACATGTCTTACATTAGCACCCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGG
* * * * *
74825474 CCAATGCCATGTTCTAGACATGGTCTTACACTGGCTCT-CATAGT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGG
*
74825522 CCGATGCATGTCCTAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
74825552 AGCCCACAAT
Statistics
Matches: 138, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 66 0.48
47 25 0.18
48 19 0.14
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGG
Found at i:74826745 original size:49 final size:49
Alignment explanation
Indices: 74826685--74826949 Score: 166
Period size: 49 Copynumber: 5.6 Consensus size: 49
74826675 ACATGAAAGT
* * * *
74826685 CGATGCCATGTCCCAGATAGGTCTTACATTGACTTTTATATATCAAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGC
* * * * *
74826734 CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
* * * **
74826783 CGATGCCATGTCCCAGACAGGTCTTACACTGACACACA-ACA--AGCTAA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAG-TGC
* * *
74826830 CG-T--CATGTCCCAAACAGGTCTTACACT-AGCT-TGTATATCTCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATC-AGTGC
* * *
74826876 CG-TG-CATGTCCCAAACATGTCTTACACTGGCTCTCATA-AT--GTGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGT-GC
* *
74826921 CGATG-CATGTCCCAAACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
74826950 AGCACACATA
Statistics
Matches: 172, Mismatches: 30, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 25 0.15
45 5 0.03
46 32 0.19
47 31 0.18
48 5 0.03
49 72 0.42
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
Found at i:74826898 original size:47 final size:46
Alignment explanation
Indices: 74826833--74826952 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 46
74826823 AAGCTAACGT
* * *
74826833 CATGTCCCAAACAGGTCTTACACTAGCT-TGTATATCTCGAGGCCG-TG
1 CATGTCCCAAACATGTCTTACACTAGCTCT-CATA-AT-GAGGCCGATG
* *
74826880 CATGTCCCAAACATGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATAATGAGGCCGATG
74826926 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
74826953 ACACATATCA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
45 6 0.09
46 29 0.45
47 29 0.45
48 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCATAATGAGGCCGATG
Found at i:74826899 original size:140 final size:139
Alignment explanation
Indices: 74826691--74826957 Score: 346
Period size: 142 Copynumber: 1.9 Consensus size: 139
74826681 AAGTCGATGC
* * * *
74826691 CATGTCCCAGATAGGTCTTACATTGACTTTTATATATCAAGGCCGATGCCATGTCCCAAACAGGT
1 CATGTCCCAAACAGGTCTTACATAGACTTGTATATATCAAGGCCGATGCCATGTCCCAAACAGGT
* * *
74826756 CTTACACTGGCTCTCATCTATCG-GTGTCGATGCCATGTCCCAGACAGGTCTTACACT-GACACA
66 CTTACACTGGCTCTCAT-AAT-GTG-GCCGATG-CATGTCCCAAACAGGTCTTACACTAG-CACA
74826819 CAACAAGCTAACGT
126 CAACAAGCTAACGT
* * *
74826833 CATGTCCCAAACAGGTCTTACACTAG-CTTGTATATCTCGAGGCCG-TG-CATGTCCCAAACATG
1 CATGTCCCAAACAGGTCTTACA-TAGACTTGTATATATCAAGGCCGATGCCATGTCCCAAACAGG
*
74826895 TCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACATGTCTTACACTAGCACACA
65 TCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACAGGTCTTACACTAGCACACA
74826958 TATCACCCAA
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
137 28 0.25
138 8 0.07
139 3 0.03
140 32 0.29
141 2 0.02
142 36 0.32
143 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (139 bp):
CATGTCCCAAACAGGTCTTACATAGACTTGTATATATCAAGGCCGATGCCATGTCCCAAACAGGT
CTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACAGGTCTTACACTAGCACACAACA
AGCTAACGT
Found at i:74828299 original size:14 final size:14
Alignment explanation
Indices: 74828265--74828291 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
74828255 TGTAGACATT
74828265 AAAATAATAATAAA
1 AAAATAATAATAAA
74828279 AAAATAATAATAA
1 AAAATAATAATAA
74828292 TACAATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAATAATAATAAA
Found at i:74830987 original size:13 final size:13
Alignment explanation
Indices: 74830946--74831004 Score: 57
Period size: 13 Copynumber: 4.3 Consensus size: 13
74830936 TAATTTTTTT
74830946 ACCCTAAAC-CTAA
1 ACCCTAAACTC-AA
*
74830959 AACCTAGAATCTCAA
1 ACCCTA-AA-CTCAA
74830974 ACCCTAAACTCAA
1 ACCCTAAACTCAA
*
74830987 ACCCCAAACTCATA
1 ACCCTAAACTCA-A
74831001 ACCC
1 ACCC
74831005 CAAATCATTG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
13 21 0.54
14 9 0.23
15 8 0.21
16 1 0.03
ACGTcount: A:0.44, C:0.39, G:0.02, T:0.15
Consensus pattern (13 bp):
ACCCTAAACTCAA
Found at i:74831005 original size:14 final size:13
Alignment explanation
Indices: 74830969--74831008 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
74830959 AACCTAGAAT
*
74830969 CTCAAACCCTAAA
1 CTCAAACCCCAAA
74830982 CTCAAACCCCAAA
1 CTCAAACCCCAAA
74830995 CTCATAACCCCAAA
1 CTCA-AACCCCAAA
74831009 TCATTGAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.45, C:0.42, G:0.00, T:0.12
Consensus pattern (13 bp):
CTCAAACCCCAAA
Found at i:74832020 original size:16 final size:16
Alignment explanation
Indices: 74831972--74832020 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
74831962 AATTTATCCA
*
74831972 ATTTTTAT-TAAAA-T
1 ATTTTTATAAAAAATT
*
74831986 ATTTTT-TAAAATATAT
1 ATTTTTATAAAAAAT-T
74832002 ATTTTTATAAAAAATT
1 ATTTTTATAAAAAATT
74832018 ATT
1 ATT
74832021 GTATTATGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 1 0.04
14 9 0.32
16 11 0.39
17 7 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTTATAAAAAATT
Found at i:74832249 original size:12 final size:12
Alignment explanation
Indices: 74832221--74832259 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
74832211 AAAACAATTA
74832221 TATATTTATAATTT
1 TATATTTAT--TTT
74832235 TATATTTATTTT
1 TATATTTATTTT
*
74832247 TATATGTATTTT
1 TATATTTATTTT
74832259 T
1 T
74832260 TAATTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 15 0.62
14 9 0.38
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (12 bp):
TATATTTATTTT
Found at i:74833580 original size:11 final size:11
Alignment explanation
Indices: 74833564--74833588 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74833554 ATTATTATTA
74833564 AATTTAAATTT
1 AATTTAAATTT
74833575 AATTTAAATTT
1 AATTTAAATTT
74833586 AAT
1 AAT
74833589 ATGTACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:74833897 original size:20 final size:20
Alignment explanation
Indices: 74833874--74833918 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
74833864 AAAATATAGA
*
74833874 AAAAAAATATTTTTTTTAAG
1 AAAAAAATAATTTTTTTAAG
74833894 AAAAAAATAATTTTTTTAAG
1 AAAAAAATAATTTTTTTAAG
74833914 AAAAA
1 AAAAA
74833919 GATTGCATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (20 bp):
AAAAAAATAATTTTTTTAAG
Found at i:74834901 original size:14 final size:14
Alignment explanation
Indices: 74834882--74834909 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74834872 TTTCAGTCAA
74834882 ATTTAAAAAATAAT
1 ATTTAAAAAATAAT
74834896 ATTTAAAAAATAAT
1 ATTTAAAAAATAAT
74834910 TTTTCAGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTTAAAAAATAAT
Found at i:74841770 original size:20 final size:21
Alignment explanation
Indices: 74841741--74841788 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
74841731 TAATCATAGC
74841741 AAAA-AATTAATATCAAAT-A
1 AAAATAATTAATATCAAATGA
*
74841760 AAAATAATTAATATCAACTGA
1 AAAATAATTAATATCAAATGA
74841781 AAAATAAT
1 AAAATAAT
74841789 AATTTATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 4 0.15
20 13 0.50
21 9 0.35
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (21 bp):
AAAATAATTAATATCAAATGA
Found at i:74847546 original size:3 final size:3
Alignment explanation
Indices: 74847540--74847722 Score: 161
Period size: 3 Copynumber: 60.3 Consensus size: 3
74847530 TTAACTAATA
* * *
74847540 TAT TAT TGT TAT TAC TAT TAT TAT TAT T-T TAC TAT TAT TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * * *
74847585 TAT CAT TAT TAT TAT TAC TAT GAT TAT TAT TAT TTT TAC TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * * * *
74847631 TAT TAT TAC CAT TAT TAT TAC TGT TAA TAT TAT TTT TAT TAC TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
74847679 TGT TCTT TAT TAT TAT TAT TAT TAT TAT TAG TAT TAT TAT TAT T
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
74847723 GTCATTTGTA
Statistics
Matches: 139, Mismatches: 37, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.01
3 129 0.93
4 8 0.06
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:74847768 original size:4 final size:4
Alignment explanation
Indices: 74847744--74847799 Score: 67
Period size: 4 Copynumber: 14.0 Consensus size: 4
74847734 TTTGTTATAT
* * * *
74847744 TTTA TTTT TTTA TTTA CTTA TTTA TTTG TTTA TTTG TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
*
74847792 TTTG TTTA
1 TTTA TTTA
74847800 AACTTTTTAA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:74848857 original size:43 final size:43
Alignment explanation
Indices: 74848758--74848879 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
74848748 TCGAGATGTG
* * * **
74848758 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTG
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGCA
* *
74848801 ATTACGTGCAAGACCATGTCTGGGACATTGGTATCGTTAAT-CA
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGCA
* * * *
74848844 ATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCG
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
74848880 ACATGTGATA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 62 0.95
44 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGCA
Found at i:74856787 original size:39 final size:39
Alignment explanation
Indices: 74856743--74856975 Score: 385
Period size: 39 Copynumber: 6.0 Consensus size: 39
74856733 ATTATATTAT
* * *
74856743 CAGCACAAAGCCTGCGGCACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
74856782 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
74856821 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
74856860 CAGCACGAAGCCTACGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
74856899 CAACACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
74856938 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74856976 TCAGTGTCTT
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 181 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:74862977 original size:42 final size:43
Alignment explanation
Indices: 74862916--74863015 Score: 121
Period size: 42 Copynumber: 2.3 Consensus size: 43
74862906 GACTTATGAT
* * *
74862916 TTACACGTAAGATCATGTCTAGGACATTGACATCG-TATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGTGACATCGATATTTGA
* * * * *
74862958 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGTGACATCGATATTTGA
74863001 TTACATGTAAGACCA
1 TTACATGTAAGACCA
74863016 CGTTTGAGAT
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACAGTGACATCGATATTTGA
Found at i:74862998 original size:43 final size:43
Alignment explanation
Indices: 74862862--74863014 Score: 132
Period size: 43 Copynumber: 3.6 Consensus size: 43
74862852 ACATAGGATC
* ** *
74862862 CGATATATGTTTTGGTGTAAGACCAC-GTCTGGGATATTGGCAT
1 CGATATATGATTTCATGTAAGACC-CTGTCTGGGACATTGGCAT
* * * * *
74862905 CGACT-TATGATTTACACGTAAGATCATGTCTAGGACATTGACAT
1 CGA-TATATGATTT-CATGTAAGACCCTGTCTGGGACATTGGCAT
* * *
74862949 CG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATATGATTTCATGTAAGACCCTGTCTGGGACATTGGCAT
* *
74862991 CGATATTTGATTACATGTAAGACC
1 CGATATATGATTTCATGTAAGACC
74863015 ACGTTTGAGA
Statistics
Matches: 86, Mismatches: 19, Indels: 10
0.75 0.17 0.09
Matches are distributed among these distances:
42 26 0.30
43 36 0.42
44 24 0.28
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
CGATATATGATTTCATGTAAGACCCTGTCTGGGACATTGGCAT
Found at i:74865127 original size:29 final size:29
Alignment explanation
Indices: 74865085--74865142 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
74865075 TTATCCGTCA
74865085 ATTCATCATTTGCATAAGACGATTGTACT
1 ATTCATCATTTGCATAAGACGATTGTACT
*
74865114 ATTCATTATTTGCATAAGACGATTGTACT
1 ATTCATCATTTGCATAAGACGATTGTACT
74865143 CAATCCTGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (29 bp):
ATTCATCATTTGCATAAGACGATTGTACT
Found at i:74866729 original size:28 final size:28
Alignment explanation
Indices: 74866697--74866755 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
74866687 TTTAGGGACT
*
74866697 AAATTGAGCAAATCATAAAATTTTGGGC
1 AAATTGAGCAAATAATAAAATTTTGGGC
74866725 AAATTGAGCAAATAATAAAATTTTGGGC
1 AAATTGAGCAAATAATAAAATTTTGGGC
74866753 AAA
1 AAA
74866756 CTTGTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.08, G:0.17, T:0.27
Consensus pattern (28 bp):
AAATTGAGCAAATAATAAAATTTTGGGC
Found at i:74874616 original size:47 final size:47
Alignment explanation
Indices: 74874545--74874712 Score: 273
Period size: 47 Copynumber: 3.6 Consensus size: 47
74874535 CCCTTCGGGA
* * * *
74874545 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
74874592 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
74874639 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
74874686 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
74874713 TATTCAAATA
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:74874623 original size:25 final size:25
Alignment explanation
Indices: 74874595--74874673 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
74874585 ACTCGGCCCT
74874595 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
74874620 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
74874642 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
74874667 ATCACAT
1 ATCACAT
74874674 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:74878754 original size:40 final size:40
Alignment explanation
Indices: 74878722--74879033 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
74878712 CCAGCATGAT
* * * * *
74878722 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
74878762 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
74878802 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
74878842 TGCTCTTTGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74878882 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
74878922 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
74878962 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
74879002 TGCTCTTTGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
74879034 CTCAATTCTC
Statistics
Matches: 250, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 250 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:74880523 original size:25 final size:25
Alignment explanation
Indices: 74880495--74880573 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
74880485 CACTCGGCCT
74880495 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
74880520 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
74880542 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
74880567 ATCACAT
1 ATCACAT
74880574 CGGCCATTAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:74880563 original size:47 final size:47
Alignment explanation
Indices: 74880446--74880659 Score: 340
Period size: 47 Copynumber: 4.6 Consensus size: 47
74880436 CCCTTCGGGA
* * * * * *
74880446 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74880493 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74880539 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74880586 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74880633 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
74880660 TATTCAAATA
Statistics
Matches: 158, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 42 0.27
47 116 0.73
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74890848 original size:87 final size:87
Alignment explanation
Indices: 74890737--74891044 Score: 406
Period size: 87 Copynumber: 3.5 Consensus size: 87
74890727 GGAATAGATT
*
74890737 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTGTAGATCTTGTCTCC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTATAGATCTTGTCTCC
74890802 CTTAACAGTAGTGGAGCAAATC
66 CTTAACAGTAGTGGAGCAAATC
* ** * *
74890824 GAAGAAGCAAGCCTTAACCGCCTAAGTAGTAAAGTAACATGCTGAAGATTACAGATCTTGTCTCC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTATAGATCTTGTCTCC
* * *
74890889 CTAAACAATAGTGGAGTAAATC
66 CTTAACAGTAGTGGAGCAAATC
** *
74890911 GAAGAAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGG-TCGAAGATCATAGATCTTGTCTC
1 GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCT-GAAGATTATAGATCTTGTCTC
74890975 CC-TAAGCAGTAGTGGAGCAAATC
65 CCTTAA-CAGTAGTGGAGCAAATC
* ** * *
74890998 GAAGACGGTGAG-CTGTAACCTCCTAAGCAGTAGGGTAACAGGCTGAA
1 GAAGA-AGCAAGCCT-TAACCCCCTAAGTAGTAGGGTAACAGGCTGAA
74891045 ACACAAGTCT
Statistics
Matches: 193, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
86 3 0.02
87 156 0.81
88 33 0.17
89 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (87 bp):
GAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTATAGATCTTGTCTCC
CTTAACAGTAGTGGAGCAAATC
Found at i:74891390 original size:53 final size:53
Alignment explanation
Indices: 74891310--74891416 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
74891300 TATCAAAAAT
74891310 GGAGAAGATTTAAGTCACCAGTCCTATTTCCCTAAATTTACAGTCAAGATTCA
1 GGAGAAGATTTAAGTCACCAGTCCTATTTCCCTAAATTTACAGTCAAGATTCA
* *
74891363 GGAGAAGATTTAAGTTACCAGTCCTATTTCCCTAAATTTATAGTCAAGATTCA
1 GGAGAAGATTTAAGTCACCAGTCCTATTTCCCTAAATTTACAGTCAAGATTCA
74891416 G
1 G
74891417 CAAACTCAGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (53 bp):
GGAGAAGATTTAAGTCACCAGTCCTATTTCCCTAAATTTACAGTCAAGATTCA
Found at i:74892894 original size:12 final size:12
Alignment explanation
Indices: 74892873--74892910 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
74892863 ATATAAATGT
74892873 TATATATATACA
1 TATATATATACA
*
74892885 CTAT-TATATAGA
1 -TATATATATACA
74892897 TATATATATACA
1 TATATATATACA
74892909 TA
1 TA
74892911 CTTTATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 3 0.14
12 16 0.73
13 3 0.14
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:74895430 original size:39 final size:39
Alignment explanation
Indices: 74895371--74895448 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
74895361 TATTAGAGTG
*
74895371 GTTTTTAACTTAGGTAGCCGAAAATTAAAGGAAACGATA
1 GTTTTTAACTTAGGTAGCCGAAAATTAAAGGAAAAGATA
*
74895410 GTTTTTAACTTAGGTTGCCGAAAATTAAAGGAAAAGATA
1 GTTTTTAACTTAGGTAGCCGAAAATTAAAGGAAAAGATA
74895449 TAAAAGAAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (39 bp):
GTTTTTAACTTAGGTAGCCGAAAATTAAAGGAAAAGATA
Found at i:74899588 original size:18 final size:18
Alignment explanation
Indices: 74899574--74899610 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74899564 AGTCAGATGT
*
74899574 AGAAACAGTTCCAGATTC
1 AGAAACAGATCCAGATTC
*
74899592 AGAATCAGATCCAGATTC
1 AGAAACAGATCCAGATTC
74899610 A
1 A
74899611 AATTACAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (18 bp):
AGAAACAGATCCAGATTC
Found at i:74899625 original size:19 final size:18
Alignment explanation
Indices: 74899585--74899626 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
74899575 GAAACAGTTC
*
74899585 CAGATTCAGAATCAGATC
1 CAGATTCAGAATCAGATA
74899603 CAGATTCA-AATTACAGATA
1 CAGATTCAGAA-T-CAGATA
74899622 CAGAT
1 CAGAT
74899627 ATGCATAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 9 0.43
19 10 0.48
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (18 bp):
CAGATTCAGAATCAGATA
Found at i:74899882 original size:15 final size:13
Alignment explanation
Indices: 74899851--74899875 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74899841 TAGAAATCAG
74899851 ATGCAGATATAAC
1 ATGCAGATATAAC
74899864 ATGCAGATATAA
1 ATGCAGATATAA
74899876 AACATGCCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (13 bp):
ATGCAGATATAAC
Found at i:74911477 original size:31 final size:31
Alignment explanation
Indices: 74911419--74911477 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
74911409 CATATTAATA
* *
74911419 AGTCATCGTTGCTGGGCAACCCGAGATGGCG
1 AGTCATCATTGCTGGGCAACCCAAGATGGCG
*
74911450 AGTCATCATTGCTGGGCAACTCAAGATG
1 AGTCATCATTGCTGGGCAACCCAAGATG
74911478 ACTTTGTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.22
Consensus pattern (31 bp):
AGTCATCATTGCTGGGCAACCCAAGATGGCG
Found at i:74922696 original size:24 final size:24
Alignment explanation
Indices: 74922669--74922720 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
74922659 TTCATATGTC
74922669 AAATAAATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
* * *
74922693 AAATATATTATACTAATAAGTATT
1 AAATAAATTATACTAATAAATACT
74922717 AAAT
1 AAAT
74922721 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:74937482 original size:91 final size:91
Alignment explanation
Indices: 74937321--74937491 Score: 272
Period size: 91 Copynumber: 1.9 Consensus size: 91
74937311 TATGCATGTC
* *
74937321 ACATCCATTAAACTTACATTCAACACATAGGGGTATTTTGGTCATTTTTGCCCTTAAGGGTATTT
1 ACATCCATTAAACTTACATTCAACACATAGGGGTATTTTGGTCATTTTCGCCCTTAAGGGCATTT
74937386 AGGTAATTTTTCCTTATATACATATA
66 AGGTAATTTTTCCTTATATACATATA
* * *
74937412 ACATCC-TTAAATCTTACCTTCAACGCATAGGGGTATTTTGGTCATTTTCGCCCTTAGGGGCATT
1 ACATCCATTAAA-CTTACATTCAACACATAGGGGTATTTTGGTCATTTTCGCCCTTAAGGGCATT
*
74937476 TCGGTAATTTTTCCTT
65 TAGGTAATTTTTCCTT
74937492 TATTACGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
90 5 0.07
91 68 0.93
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.40
Consensus pattern (91 bp):
ACATCCATTAAACTTACATTCAACACATAGGGGTATTTTGGTCATTTTCGCCCTTAAGGGCATTT
AGGTAATTTTTCCTTATATACATATA
Found at i:74937782 original size:28 final size:28
Alignment explanation
Indices: 74937750--74937884 Score: 130
Period size: 28 Copynumber: 4.8 Consensus size: 28
74937740 TACATACATG
*
74937750 CATATGGCCCA-CTAGGCCCAATCTTATT
1 CATATGGCCCATC-AGGCCCAATCTCATT
* *
74937778 TATATGGCCCATCCGGCCCAAT-TCACGTT
1 CATATGGCCCATCAGGCCCAATCTCA--TT
* *
74937807 CATATTGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAA-TCTCATT
* * *
74937836 CATATGGCCCGTTAGGCCTAATCTCATT
1 CATATGGCCCATCAGGCCCAATCTCATT
* *
74937864 TATATGGCCCATCCGGCCCAA
1 CATATGGCCCATCAGGCCCAA
74937885 ATCACATTAT
Statistics
Matches: 85, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
27 2 0.02
28 40 0.47
29 40 0.47
30 1 0.01
31 2 0.02
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATCTCATT
Found at i:74937816 original size:29 final size:29
Alignment explanation
Indices: 74937745--74937896 Score: 141
Period size: 29 Copynumber: 5.3 Consensus size: 29
74937735 ACCCCTACAT
*
74937745 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATC-AGGCCCAATTC
** * *
74937773 TTATTTATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* *
74937802 ACGTTCATATTGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * *
74937831 ACATTCATATGGCCCGTTAGGCCTAA-TC
1 ACATTCATATGGCCCATCAGGCCCAATTC
* * * *
74937859 TCATTTATATGGCCCATCCGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATTC
74937888 ACATT-ATAT
1 ACATTCATAT
74937897 TCATGCTCAC
Statistics
Matches: 98, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
28 45 0.46
29 53 0.54
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAATTC
Found at i:74938918 original size:31 final size:31
Alignment explanation
Indices: 74938883--74938950 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
74938873 TTACAAAATG
** *
74938883 GTCATTGAACTATTTGAAAGTTATCATTTAA
1 GTCATTGAACTATTCAAAAGTTATCATTCAA
* * *
74938914 GTCATTGAATTATTCAAAAGTTTTTATTCAA
1 GTCATTGAACTATTCAAAAGTTATCATTCAA
74938945 GTCATT
1 GTCATT
74938951 AGGTGGTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (31 bp):
GTCATTGAACTATTCAAAAGTTATCATTCAA
Found at i:74942650 original size:62 final size:62
Alignment explanation
Indices: 74942550--74942669 Score: 222
Period size: 62 Copynumber: 1.9 Consensus size: 62
74942540 GTGGCAAAGA
* *
74942550 AAAATACCAATCTTTGGCGTTTCCCTAAAATTCGTCAAGAAAACTTTACATTTCACTGTATT
1 AAAATACCAATCTTTGGCGTTTCCCTAAAAGTCATCAAGAAAACTTTACATTTCACTGTATT
74942612 AAAATACCAATCTTTGGCGTTTCCCTAAAAGTCATCAAGAAAACTTTACATTTCACTG
1 AAAATACCAATCTTTGGCGTTTCCCTAAAAGTCATCAAGAAAACTTTACATTTCACTG
74942670 CATCAAAAGC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (62 bp):
AAAATACCAATCTTTGGCGTTTCCCTAAAAGTCATCAAGAAAACTTTACATTTCACTGTATT
Found at i:74945313 original size:18 final size:18
Alignment explanation
Indices: 74945264--74945317 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 18
74945254 AGGAAGTTAG
*
74945264 ATTT-TTTATTTTTATTT
1 ATTTATTTATTTTTATCT
74945281 AGTTTATTACATATTTTTATCT
1 A-TTTATT---TATTTTTATCT
74945303 ATTTATTTATTTTTA
1 ATTTATTTATTTTTA
74945318 AACTTTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
17 1 0.03
18 11 0.35
19 2 0.06
21 6 0.19
22 11 0.35
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (18 bp):
ATTTATTTATTTTTATCT
Found at i:74953263 original size:130 final size:130
Alignment explanation
Indices: 74953024--74953593 Score: 664
Period size: 130 Copynumber: 4.4 Consensus size: 130
74953014 GATTTAATCG
* * * *
74953024 CTGATTTATGATTATAACCTAAGTTCATTGATTTACTATCATAAACAATCTTCTCTAAGTTAGTT
1 CTGATTTACGATCACAACCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTAAGTTAGTT
* * * *
74953089 GATTTGCTATCGCTACTCCAAATAGCTTGTAGATTTAATATCACAGGAGATATTATTAAGGCTCA
66 GATTTACTATCGCTACTCCAAACAGCTCGTAGATTTAATATCACAGTAGATATTATTAAGGCTCA
* * *
74953154 CTGATTTACGATTACAACCTAAGTTCATTGATTTACTATCATGAATAATATTCTCTAAGTTCA-T
1 CTGATTTACGATCACAACCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTAAGTT-AGT
* * * ** *
74953218 TGATTTACTATCGTTACTTCAAATAGCTCGCTA-ATTTAAGGTCACAGTTGATATTATTAAGGCT
65 TGATTTACTATCGCTACTCCAAACAGCTCG-TAGATTTAATATCACAGTAGATATTATTAAGGCT
**
74953282 TG
129 CA
* * * * * *
74953284 CTGATTTACGATCACAACCCAAGTTCATTGATTTACTATCATGAAAAATTTTCTTTGAGTTAGCT
1 CTGATTTACGATCACAACCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTAAGTTAGTT
* * * *
74953349 GATTTATTATCACTACTCCAAACAGCTCACTAG-TTTAATATCATAGCTA-ATATTATTAAGGCT
66 GATTTACTATCGCTACTCCAAACAGCTC-GTAGATTTAATATCACAG-TAGATATTATTAAGGCT
**
74953412 TG
129 CA
* * ** *
74953414 TTGATTTACAATCAGGACCTAAATTCATTGATTTACTATCATGAACAATCTTCTCTAAGTTAGTT
1 CTGATTTACGATCACAACCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTAAGTTAGTT
* * *
74953479 GATTTACTATTGCTACTCCAAACAACTCGTAGATTTAATATCATAGCT-GATATTATTAAGGCTC
66 GATTTACTATCGCTACTCCAAACAGCTCGTAGATTTAATATCACAG-TAGATATTATTAAGGCTC
74953543 A
130 A
* * * * *
74953544 CTGATTTACGATAACAACCAAAGTTCATTTATTTACAATCATGAATAATC
1 CTGATTTACGATCACAACCTAAGTTCATTGATTTACTATCATGAACAATC
74953594 CTGCCTGAGT
Statistics
Matches: 372, Mismatches: 60, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
129 4 0.01
130 364 0.98
131 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (130 bp):
CTGATTTACGATCACAACCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTAAGTTAGTT
GATTTACTATCGCTACTCCAAACAGCTCGTAGATTTAATATCACAGTAGATATTATTAAGGCTCA
Found at i:74954723 original size:29 final size:29
Alignment explanation
Indices: 74954681--74954740 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
74954671 TCTTTCCACG
74954681 GAAATAATGTTTGTACCTCACCACCAGTA
1 GAAATAATGTTTGTACCTCACCACCAGTA
*
74954710 GAAATAATGTTTGTGCCTCACCACCAGTA
1 GAAATAATGTTTGTACCTCACCACCAGTA
74954739 GA
1 GA
74954741 CACAAAGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (29 bp):
GAAATAATGTTTGTACCTCACCACCAGTA
Found at i:74954750 original size:29 final size:29
Alignment explanation
Indices: 74954689--74954750 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
74954679 CGGAAATAAT
* *
74954689 GTTTGTACCTCACCACCAGTAGAAATAAT
1 GTTTGTACCTCACCACCAGTAGAAACAAA
* *
74954718 GTTTGTGCCTCACCACCAGTAGACACAAA
1 GTTTGTACCTCACCACCAGTAGAAACAAA
74954747 GTTT
1 GTTT
74954751 ATTGAACCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (29 bp):
GTTTGTACCTCACCACCAGTAGAAACAAA
Found at i:74957190 original size:72 final size:73
Alignment explanation
Indices: 74957074--74957220 Score: 269
Period size: 72 Copynumber: 2.0 Consensus size: 73
74957064 CAATATTTAT
74957074 TTTTAATACAAATGAAAGTCGGGGATACATAAAAAGGATGGATGTGTATATATACATGCATGTAA
1 TTTTAATACAAATGAAAGTCGGGGATACATAAAAAGGATGGATGTGTATATATACATGCATGTAA
74957139 AAATTAGC
66 AAATTAGC
* *
74957147 TTTTAATACAAATGAATGTC-GGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
1 TTTTAATACAAATGAAAGTCGGGGATACATAAAAAGGATGGATGTGTATATATACATGCATGTAA
74957211 AAATTAGC
66 AAATTAGC
74957219 TT
1 TT
74957221 CATCTTTTTA
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
72 53 0.74
73 19 0.26
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (73 bp):
TTTTAATACAAATGAAAGTCGGGGATACATAAAAAGGATGGATGTGTATATATACATGCATGTAA
AAATTAGC
Found at i:74979426 original size:31 final size:31
Alignment explanation
Indices: 74979388--74979456 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
74979378 CTTAACCACC
* **
74979388 CAATGACTTGAATAAAAACTTTTGAATAATT
1 CAATGACTTAAATAAAAACTTTCAAATAATT
* *
74979419 CAATGACTTAAATGAAAACTTTCAAATAGTT
1 CAATGACTTAAATAAAAACTTTCAAATAATT
74979450 CAATGAC
1 CAATGAC
74979457 CATTTTATAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCAAATAATT
Found at i:74990516 original size:31 final size:31
Alignment explanation
Indices: 74990481--74990563 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
74990471 CTTCCTGCAT
* *
74990481 TAAAATCCAACCAAATACAACAAATATAGTA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * * *
74990512 TAAAATGCAGCCAAAAACAGCAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
*
74990543 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
74990564 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.59, C:0.19, G:0.06, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:74990814 original size:21 final size:21
Alignment explanation
Indices: 74990786--74990882 Score: 124
Period size: 21 Copynumber: 4.6 Consensus size: 21
74990776 TTGCTCTGCT
*
74990786 CTGCTGCCTCTGCCTCCTTCG
1 CTGCTGCCTCTGCCTCCCTCG
* *
74990807 CT-CGTGCCTTTGCCACCCTCG
1 CTGC-TGCCTCTGCCTCCCTCG
*
74990828 CTGCTGCCGCTGCCTCCCTCG
1 CTGCTGCCTCTGCCTCCCTCG
* *
74990849 CTGCTGCCGCTGCCTCCCTCT
1 CTGCTGCCTCTGCCTCCCTCG
74990870 CTGCTGCCTCTGC
1 CTGCTGCCTCTGC
74990883 TCTAAGTTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
20 1 0.02
21 64 0.97
22 1 0.02
ACGTcount: A:0.01, C:0.49, G:0.21, T:0.29
Consensus pattern (21 bp):
CTGCTGCCTCTGCCTCCCTCG
Found at i:74996388 original size:9 final size:9
Alignment explanation
Indices: 74996370--74996704 Score: 112
Period size: 9 Copynumber: 37.7 Consensus size: 9
74996360 TAAGTATAAT
74996370 TAAGTTATG
1 TAAGTTATG
*
74996379 TAAGTCATG
1 TAAGTTATG
74996388 T-A-TTATG
1 TAAGTTATG
*
74996395 TAAGTCATG
1 TAAGTTATG
74996404 T-A-TTATG
1 TAAGTTATG
74996411 TAAGTTATG
1 TAAGTTATG
*
74996420 TAAATTATG
1 TAAGTTATG
* *
74996429 TAAATCATG
1 TAAGTTATG
* *
74996438 -AATTTTGATCCT
1 TAA-GTT-AT--G
*
74996450 TAAATTATG
1 TAAGTTATG
74996459 TAAGTTATG
1 TAAGTTATG
74996468 T-A-TTATG
1 TAAGTTATG
74996475 TAAGTTATG
1 TAAGTTATG
*
74996484 -AAATT-TG
1 TAAGTTATG
* **
74996491 -AACTTTAAA
1 TAA-GTTATG
74996500 TAA-TTATG
1 TAAGTTATG
74996508 TAAGTTATG
1 TAAGTTATG
*
74996517 TAAATTATG
1 TAAGTTATG
*
74996526 TAACTTATG
1 TAAGTTATG
* * * *
74996535 AAATTTGGTCTT
1 TAA---GTTATG
*
74996547 TAAATTATG
1 TAAGTTATG
74996556 TAAGTTATG
1 TAAGTTATG
*
74996565 T-A-TCATG
1 TAAGTTATG
74996572 TAAGTTATG
1 TAAGTTATG
* * *
74996581 AAATTTGATCTT
1 TAAGTT-A--TG
*
74996593 TAAATTATG
1 TAAGTTATG
*
74996602 TAAGTCATG
1 TAAGTTATG
74996611 T-AG-TATG
1 TAAGTTATG
*
74996618 TAAGTTAAG
1 TAAGTTATG
*
74996627 TAAATTATG
1 TAAGTTATG
74996636 TAAGTTATG
1 TAAGTTATG
* * *
74996645 AAATTTGAACTT
1 TAAGTT--A-TG
*
74996657 TAAATTATG
1 TAAGTTATG
74996666 TAAGTTATG
1 TAAGTTATG
74996675 T-A--TATG
1 TAAGTTATG
*
74996681 TAAATTATG
1 TAAGTTATG
*
74996690 TAAATTATG
1 TAAGTTATG
*
74996699 TGAGTT
1 TAAGTT
74996705 GCTGGTGAAC
Statistics
Matches: 240, Mismatches: 55, Indels: 62
0.67 0.15 0.17
Matches are distributed among these distances:
6 5 0.02
7 30 0.12
8 27 0.11
9 150 0.62
10 6 0.03
11 4 0.02
12 16 0.07
13 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:74996395 original size:16 final size:16
Alignment explanation
Indices: 74996374--74996479 Score: 94
Period size: 16 Copynumber: 6.6 Consensus size: 16
74996364 TATAATTAAG
74996374 TTATGTAAGTCATGTA
1 TTATGTAAGTCATGTA
74996390 TTATGTAAGTCATGTA
1 TTATGTAAGTCATGTA
*
74996406 TTATGTAAGTTATGTAAA
1 TTATGTAAGTCATGT--A
* *
74996424 TTATGTAAATCATGAA
1 TTATGTAAGTCATGTA
* *
74996440 TT-T-TGA-TCCT-TAAA
1 TTATGTAAGTCATGT--A
*
74996454 TTATGTAAGTTATGTA
1 TTATGTAAGTCATGTA
74996470 TTATGTAAGT
1 TTATGTAAGT
74996480 TATGAAATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
13 3 0.04
14 5 0.07
15 2 0.03
16 46 0.64
17 2 0.03
18 14 0.19
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.45
Consensus pattern (16 bp):
TTATGTAAGTCATGTA
Found at i:74996491 original size:46 final size:46
Alignment explanation
Indices: 74996405--74996624 Score: 287
Period size: 46 Copynumber: 4.6 Consensus size: 46
74996395 TAAGTCATGT
* * * *
74996405 ATTATGTAAGTTATGTAAATTATGTAAATCATGAATTTTGATCCTTAA
1 ATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCTTTAA
*
74996453 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGAACTTTAAATA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTT--A-A
* *
74996502 ATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGGTCTTTAA
1 ATTATGTAAGTTATGT--ATTATGTAAGTTATGAAATTTGATCTTTAA
*
74996550 ATTATGTAAGTTATGTATCATGTAAGTTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
* *
74996596 ATTATGTAAGTCATGTAGTATGTAAGTTA
1 ATTATGTAAGTTATGTATTATGTAAGTTA
74996625 AGTAAATTAT
Statistics
Matches: 153, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
46 76 0.50
48 34 0.22
49 18 0.12
51 25 0.16
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (46 bp):
ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAA
Found at i:74996518 original size:97 final size:94
Alignment explanation
Indices: 74996405--74996612 Score: 317
Period size: 97 Copynumber: 2.2 Consensus size: 94
74996395 TAAGTCATGT
*
74996405 ATTATGTAAGTTATGTAAATTATGTAAATCATGAATTTTGATCCTTAAATTATGTAAGTTATGTA
1 ATTATGTAAGTTATGTAAATTATGTAAATCATGAAATTTGATCCTTAAATTATGTAAGTTATGTA
*
74996470 TTATGTAAGTTATGAAATTTGAACTTTAAATA
66 TCATGTAAGTTATGAAATTTGAACTTT--A-A
* * * *
74996502 ATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGGTCTTTAAATTATGTAAGTTATGTA
1 ATTATGTAAGTTATGTAAATTATGTAAATCATGAAATTTGATCCTTAAATTATGTAAGTTATGTA
*
74996567 TCATGTAAGTTATGAAATTTGATCTTTAA
66 TCATGTAAGTTATGAAATTTGAACTTTAA
*
74996596 ATTATGTAAGTCATGTA
1 ATTATGTAAGTTATGTA
74996613 GTATGTAAGT
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
94 17 0.17
95 1 0.01
97 85 0.83
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (94 bp):
ATTATGTAAGTTATGTAAATTATGTAAATCATGAAATTTGATCCTTAAATTATGTAAGTTATGTA
TCATGTAAGTTATGAAATTTGAACTTTAA
Found at i:74996605 original size:30 final size:30
Alignment explanation
Indices: 74996469--74996674 Score: 134
Period size: 30 Copynumber: 6.5 Consensus size: 30
74996459 TAAGTTATGT
74996469 ATTATGTAAGTTATGAAATTTGAACTTTAAATA
1 ATTATGTAAGTTATGAAATTTGAACTTT--A-A
74996502 ATTATGTAAGTTATGTAAATTATGTAACTTATGAA
1 ATTATGTAAGTTATG-AAATT-TG-AACTT-T-AA
* * **
74996537 ATT-TG---GTCT-TTAAATTATGTAAGTTATGT
1 ATTATGTAAGT-TATGAAATT-TG-AACTT-TAA
* *
74996566 ATCATGTAAGTTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGAAATTTGAACTTTAA
* * * * *
74996596 ATTATGTAAGTCATGTAGTATGTAAGTTAAGTAA
1 ATTATGTAAGTTATGAAATTTG-AACTT---TAA
74996630 ATTATGTAAGTTATGAAATTTGAACTTTAA
1 ATTATGTAAGTTATGAAATTTGAACTTTAA
74996660 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
74996675 TATATGTAAA
Statistics
Matches: 136, Mismatches: 23, Indels: 31
0.72 0.12 0.16
Matches are distributed among these distances:
29 2 0.01
30 53 0.39
31 9 0.07
32 4 0.03
33 27 0.20
34 28 0.21
35 6 0.04
36 6 0.04
37 1 0.01
ACGTcount: A:0.37, C:0.03, G:0.16, T:0.44
Consensus pattern (30 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAA
Found at i:74996634 original size:34 final size:32
Alignment explanation
Indices: 74996593--74996704 Score: 113
Period size: 30 Copynumber: 3.5 Consensus size: 32
74996583 ATTTGATCTT
* *
74996593 TAAATTATGTAAGTCATGTAGTATGTAAGTTAAG
1 TAAATTATGTAAGTTATGTA-TATGTAAATT-AG
* * *
74996627 TAAATTATGTAAGTTATG-AAATTTGAACTT--
1 TAAATTATGTAAGTTATGTATATGT-AAATTAG
74996657 TAAATTATGTAAGTTATGTATATGTAAATTATG
1 TAAATTATGTAAGTTATGTATATGTAAATTA-G
*
74996690 TAAATTATGTGAGTT
1 TAAATTATGTAAGTT
74996705 GCTGGTGAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
30 22 0.34
31 4 0.06
32 3 0.05
33 19 0.29
34 17 0.26
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (32 bp):
TAAATTATGTAAGTTATGTATATGTAAATTAG
Found at i:74996637 original size:64 final size:63
Alignment explanation
Indices: 74996552--74996704 Score: 229
Period size: 64 Copynumber: 2.4 Consensus size: 63
74996542 GTCTTTAAAT
* *
74996552 TATGTAAGTTATGT--ATCATGTAAGTTATGAAATTTGATCTTTAAATTATGTAAGTCATGTA
1 TATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTA
* *
74996613 GTATGTAAGTTAAGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATGTA
1 -TATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTA
* *
74996677 TATGTAAATTATGTAAATTATGTGAGTT
1 TATGTAAGTTATGTAAATTATGTAAGTT
74996705 GCTGGTGAAC
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
62 13 0.16
63 25 0.30
64 44 0.54
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.44
Consensus pattern (63 bp):
TATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTCATGTA
Found at i:74996682 original size:15 final size:15
Alignment explanation
Indices: 74996662--74996691 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74996652 AACTTTAAAT
*
74996662 TATGTAAGTTATGTA
1 TATGTAAATTATGTA
74996677 TATGTAAATTATGTA
1 TATGTAAATTATGTA
74996692 AATTATGTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (15 bp):
TATGTAAATTATGTA
Found at i:74996746 original size:17 final size:17
Alignment explanation
Indices: 74996724--74996757 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
74996714 CTTGAAAAAA
*
74996724 ATATATTACTTTTGAAT
1 ATATATTAATTTTGAAT
74996741 ATATATTAATTTTGAAT
1 ATATATTAATTTTGAAT
74996758 TAGAAACATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATTAATTTTGAAT
Found at i:74998202 original size:14 final size:13
Alignment explanation
Indices: 74998183--74998212 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
74998173 CAATATAATT
74998183 TTACTTCATATATA
1 TTACTTCATATA-A
74998197 TTACTTCATATAA
1 TTACTTCATATAA
74998210 TTA
1 TTA
74998213 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:75001402 original size:15 final size:14
Alignment explanation
Indices: 75001371--75001426 Score: 67
Period size: 15 Copynumber: 3.9 Consensus size: 14
75001361 CACAAAATAA
*
75001371 TAACCCCTAAGCAT
1 TAACCCCTAACCAT
75001385 TAACCCCTAAACCAT
1 TAACCCCT-AACCAT
*
75001400 TAACCCATAACCTAT
1 TAACCCCTAACC-AT
*
75001415 AAACCCCTAACC
1 TAACCCCTAACC
75001427 CCTGACCCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
14 12 0.33
15 24 0.67
ACGTcount: A:0.39, C:0.39, G:0.02, T:0.20
Consensus pattern (14 bp):
TAACCCCTAACCAT
Found at i:75002430 original size:12 final size:12
Alignment explanation
Indices: 75002413--75002441 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
75002403 ATTTTCTATT
75002413 AAAACGCCGCTA
1 AAAACGCCGCTA
75002425 AAAACGCCGCTA
1 AAAACGCCGCTA
75002437 AAAAC
1 AAAAC
75002442 CTATTTTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.31, G:0.14, T:0.07
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:75004413 original size:55 final size:53
Alignment explanation
Indices: 75004226--75004477 Score: 203
Period size: 55 Copynumber: 4.8 Consensus size: 53
75004216 CGGGTACCTT
* * * *
75004226 ACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AACTC
* * *
75004275 ACCATTGGCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
* * * * *
75004328 ACCAATGTCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTCTAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC
* * *** *
75004383 ATCAATGCCATGTCTTGACATTGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTC
* * *
75004437 ACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
75004478 AAACCCTCAT
Statistics
Matches: 166, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 35 0.21
50 1 0.01
52 2 0.01
53 48 0.29
54 10 0.06
55 68 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
Found at i:75009290 original size:24 final size:23
Alignment explanation
Indices: 75009263--75009307 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
75009253 TTTGCTCTTC
*
75009263 TAGCATGAACTTTTCTTACCTTTT
1 TAGCAT-AACTCTTCTTACCTTTT
*
75009287 TAGCATAAGTCTTCTTACCTT
1 TAGCATAACTCTTCTTACCTT
75009308 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.47
Consensus pattern (23 bp):
TAGCATAACTCTTCTTACCTTTT
Found at i:75009503 original size:53 final size:50
Alignment explanation
Indices: 75009379--75009520 Score: 171
Period size: 53 Copynumber: 2.8 Consensus size: 50
75009369 CGGGTACCTT
*
75009379 ACCATTGCCATGACTTGTCATGGTCTTACATGGTATCC-TTTTGAAACTC
1 ACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTTTTGAAACTC
* * *
75009428 ACCGTTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTC
1 ACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT---TT-TGAAACTC
* * *
75009481 ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
75009521 AAACCCTAAT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
49 34 0.43
50 1 0.01
53 42 0.53
54 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (50 bp):
ACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTTTTGAAACTC
Found at i:75017218 original size:39 final size:39
Alignment explanation
Indices: 75017083--75017201 Score: 211
Period size: 39 Copynumber: 3.1 Consensus size: 39
75017073 TGTGAATATA
*
75017083 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
75017122 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
75017161 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
75017200 TA
1 TA
75017202 CGTGCTGGAC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:75021728 original size:12 final size:12
Alignment explanation
Indices: 75021711--75021743 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
75021701 CGGCCCACCC
75021711 ATATTAATTTTT
1 ATATTAATTTTT
75021723 ATATT-ATTTTT
1 ATATTAATTTTT
75021734 ATA-TAATTTT
1 ATATTAATTTT
75021744 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:75021901 original size:30 final size:30
Alignment explanation
Indices: 75021867--75021929 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
75021857 ACTTAACAAG
75021867 CAAATATCTCTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
*
75021897 CAAATATCTTTAAAATAATAACAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
75021927 CAA
1 CAA
75021930 TAAAATAAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (30 bp):
CAAATATCTCTAAAATAATAACAAAATTAA
Found at i:75022818 original size:65 final size:66
Alignment explanation
Indices: 75022729--75022925 Score: 233
Period size: 65 Copynumber: 3.0 Consensus size: 66
75022719 TGAAAGCTCG
* * * *
75022729 GACAAGGACCCT-AAAAGGGATTATTAAACCAAGAGGAAGACATTAGAAAA-AGAGTAGAACAAG
1 GACAA-GACCCTCAAAAGGGGTTATTAAACCAAGAGGAAGACATCAAAAAACAAAGTAGAACAAG
75022792 GA
65 GA
* * *
75022794 GACAAGACCCTCGAAAGGGGTTATTAAACCGAGAGGAGGACATCAAAAAACAAAGTAGAACAAGG
1 GACAAGACCCTCAAAAGGGGTTATTAAACCAAGAGGAAGACATCAAAAAACAAAGTAGAACAAGG
75022859 A
66 A
* * * *
75022860 GACAAGACCCCCAAAAGGGGTTATTAAATCAAGAGG-AGTACAT-AAAAAATAGAA-AAGAACAA
1 GACAAGACCCTCAAAAGGGGTTATTAAACCAAGAGGAAG-ACATCAAAAAACA-AAGTAGAACAA
75022922 GGA
64 GGA
75022925 G
1 G
75022926 GATGATGACA
Statistics
Matches: 114, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
64 6 0.05
65 56 0.49
66 52 0.46
ACGTcount: A:0.50, C:0.14, G:0.24, T:0.12
Consensus pattern (66 bp):
GACAAGACCCTCAAAAGGGGTTATTAAACCAAGAGGAAGACATCAAAAAACAAAGTAGAACAAGG
A
Found at i:75022877 original size:66 final size:64
Alignment explanation
Indices: 75022741--75022925 Score: 228
Period size: 66 Copynumber: 2.8 Consensus size: 64
75022731 CAAGGACCCT
* * * * *
75022741 AAAAGGGATTATTAAACCAAGAGGAAGACATTAGAAAAAGAGTAGAACAAGGAGACAAGACCCTC
1 AAAAGGGGTTATTAAACCAAGAGGAGGACA-TAAAAAAAAAGTAGAACAAGGAGACAAGACCCCC
* *
75022806 GAAAGGGGTTATTAAACCGAGAGGAGGACATCAAAAAACAAAGTAGAACAAGGAGACAAGACCCC
1 AAAAGGGGTTATTAAACCAAGAGGAGGACAT-AAAAAA-AAAGTAGAACAAGGAGACAAGACCCC
75022871 C
64 C
* * *
75022872 AAAAGGGGTTATTAAATCAAGAGGAGTACATAAAAAATAGAA-AAGAACAAGGAG
1 AAAAGGGGTTATTAAACCAAGAGGAGGACATAAAAAA-A-AAGTAGAACAAGGAG
75022926 GATGATGACA
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
64 1 0.01
65 49 0.47
66 54 0.52
ACGTcount: A:0.51, C:0.13, G:0.24, T:0.12
Consensus pattern (64 bp):
AAAAGGGGTTATTAAACCAAGAGGAGGACATAAAAAAAAAGTAGAACAAGGAGACAAGACCCCC
Found at i:75026913 original size:18 final size:19
Alignment explanation
Indices: 75026892--75026939 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
75026882 ATTACAAAAT
75026892 AATTTAAAATAATTT-T-AA
1 AATTTAAAAT-ATTTATAAA
*
75026910 AATTCAAAATATTTATAAA
1 AATTTAAAATATTTATAAA
75026929 AATTCTAAAAT
1 AATT-TAAAAT
75026940 TTATTCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 4 0.16
18 10 0.40
19 6 0.24
20 5 0.20
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTTAAAATATTTATAAA
Found at i:75026932 original size:27 final size:29
Alignment explanation
Indices: 75026879--75026940 Score: 85
Period size: 27 Copynumber: 2.2 Consensus size: 29
75026869 ACTCTCAACA
*
75026879 AAAATTACAAAATAATTTAAAATAATTTT
1 AAAATTACAAAATAATTTAAAATAATTCT
75026908 AAAATT-CAAAAT-ATTTATAAA-AATTCT
1 AAAATTACAAAATAATTTA-AAATAATTCT
75026935 AAAATT
1 AAAATT
75026941 TATTCTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 16 0.52
28 9 0.29
29 6 0.19
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (29 bp):
AAAATTACAAAATAATTTAAAATAATTCT
Found at i:75026941 original size:18 final size:19
Alignment explanation
Indices: 75026908--75026943 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
75026898 AAATAATTTT
75026908 AAAATTCAAAATATTTATA
1 AAAATTCAAAATATTTATA
*
75026927 AAAATTCTAAA-ATTTAT
1 AAAATTCAAAATATTTAT
75026944 TCTTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTCAAAATATTTATA
Found at i:75027226 original size:21 final size:21
Alignment explanation
Indices: 75027206--75027274 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
75027196 GATTCGACTT
*
75027206 GACTCGAATTTCATTTTACTT
1 GACTCGAATTTCATTTTACTC
**
75027227 GACTCG-A-TTCGATTCGACTC
1 GACTCGAATTTC-ATTTTACTC
75027247 GACTCGAATTTCATTTTACTC
1 GACTCGAATTTCATTTTACTC
75027268 GACTCGA
1 GACTCGA
75027275 TTCAAGCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 3 0.08
20 13 0.32
21 21 0.52
22 3 0.08
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (21 bp):
GACTCGAATTTCATTTTACTC
Found at i:75027234 original size:41 final size:41
Alignment explanation
Indices: 75027189--75027277 Score: 160
Period size: 41 Copynumber: 2.2 Consensus size: 41
75027179 CCAATTTCAT
* *
75027189 TCGATTCGATTCGACTTGACTCGAATTTCATTTTACTTGAC
1 TCGATTCGATTCGACTCGACTCGAATTTCATTTTACTCGAC
75027230 TCGATTCGATTCGACTCGACTCGAATTTCATTTTACTCGAC
1 TCGATTCGATTCGACTCGACTCGAATTTCATTTTACTCGAC
75027271 TCGATTC
1 TCGATTC
75027278 AAGCAAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (41 bp):
TCGATTCGATTCGACTCGACTCGAATTTCATTTTACTCGAC
Found at i:75032086 original size:23 final size:22
Alignment explanation
Indices: 75032034--75032086 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
75032024 TCCACGTCTT
*
75032034 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
75032056 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
75032079 TTTCTTTT
1 TTTCTTTT
75032087 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Done.