Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 226 of 332
Found at i:75039486 original size:21 final size:21
Alignment explanation
Indices: 75039460--75039500 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75039450 ATCTGCTCAA
* *
75039460 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
75039481 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
75039501 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:75046876 original size:29 final size:29
Alignment explanation
Indices: 75046843--75046901 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
75046833 GTGTGCTAGT
75046843 CATATGACACCTGTGGCTGCATATTTTAA
1 CATATGACACCTGTGGCTGCATATTTTAA
75046872 CATATGACACCTGTGGCTGCATATTTTAA
1 CATATGACACCTGTGGCTGCATATTTTAA
75046901 C
1 C
75046902 TCATTTGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (29 bp):
CATATGACACCTGTGGCTGCATATTTTAA
Found at i:75047819 original size:42 final size:42
Alignment explanation
Indices: 75047772--75047855 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
75047762 ACTCCTAATT
*
75047772 GGGAAAATAATTCTCTTATTTTAATAAACTACTAAAACATAA
1 GGGAAAATAATTCTCTTATTCTAATAAACTACTAAAACATAA
* * *
75047814 GGGAAAATAGTTCTCTTATTCTAATAAACTATTAAAAGATAA
1 GGGAAAATAATTCTCTTATTCTAATAAACTACTAAAACATAA
75047856 AATAAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (42 bp):
GGGAAAATAATTCTCTTATTCTAATAAACTACTAAAACATAA
Found at i:75047863 original size:42 final size:42
Alignment explanation
Indices: 75047774--75047869 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
75047764 TCCTAATTGG
* **
75047774 GAAAATAATTCTCTTATTTTAATAAACTACTAAAACATAAGG
1 GAAAATAATTCTCTTATTCTAATAAACTACTAAAACATAAAA
* * *
75047816 GAAAATAGTTCTCTTATTCTAATAAACTATTAAAAGATAAAA
1 GAAAATAATTCTCTTATTCTAATAAACTACTAAAACATAAAA
* *
75047858 TAAAATATTTCT
1 GAAAATAATTCT
75047870 AGAATATTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (42 bp):
GAAAATAATTCTCTTATTCTAATAAACTACTAAAACATAAAA
Found at i:75051678 original size:42 final size:42
Alignment explanation
Indices: 75051619--75051700 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
75051609 TCCTAATTGG
*
75051619 GAAAATAATTCCCTTATTTTAATAAACTACTAAAACATAAGA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAGA
* *
75051661 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAA
75051701 AATATTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (42 bp):
GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAGA
Found at i:75051737 original size:19 final size:18
Alignment explanation
Indices: 75051715--75051754 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
75051705 TTAATAAAAC
75051715 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
75051734 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
75051752 TTA
1 TTA
75051755 AAATATACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:75055485 original size:37 final size:37
Alignment explanation
Indices: 75055444--75055517 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
75055434 TTGAAGTTTC
*
75055444 AATCTTATTTGATTTGTAAAATTCTTGAATTTTTTTT
1 AATCTTATTTGATCTGTAAAATTCTTGAATTTTTTTT
*
75055481 AATCTTATTTGATCTGTAAAATTCTTGATTTTTTTTT
1 AATCTTATTTGATCTGTAAAATTCTTGAATTTTTTTT
75055518 CAAATACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.07, G:0.08, T:0.59
Consensus pattern (37 bp):
AATCTTATTTGATCTGTAAAATTCTTGAATTTTTTTT
Found at i:75056606 original size:135 final size:135
Alignment explanation
Indices: 75056364--75056641 Score: 389
Period size: 135 Copynumber: 2.1 Consensus size: 135
75056354 TTTAGTCTTT
* * * * *
75056364 TAAAGTGGTATGTAACATTTTTTACATGATAAATTGTGTCATGTAGCATCCAATGATTAGTCTAC
1 TAAAGTAGTATGCAACACTTATGACATGATAAATTGTGTCATGTAGCATCCAATGATTAGTCTAC
* * * * *
75056429 GTGTCAAAAAATGTCATGTCAAATTTCCGTTAGAGATTTTAATATGAGTGATCAAAATGAACAAA
66 ATGTCAAAAAATGCCATGTCAAATTTCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACAAA
75056494 CTATG
131 CTATG
* *
75056499 TAAAGTAGTATGCAACACTTATGACATGATAAATTGTG-CTAT-TTGACATCCAATGATTGGTCT
1 TAAAGTAGTATGCAACACTTATGACATGATAAATTGTGTC-ATGTAG-CATCCAATGATTAGTCT
* *
75056562 ACATGTCAAAAAATGCCATGTCAGATTTCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACG
64 ACATGTCAAAAAATGCCATGTCAAATTTCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACA
75056627 AACTATG
129 AACTATG
*
75056634 TAACGTAG
1 TAAAGTAG
75056642 GTATCTAAAT
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
134 3 0.02
135 123 0.98
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (135 bp):
TAAAGTAGTATGCAACACTTATGACATGATAAATTGTGTCATGTAGCATCCAATGATTAGTCTAC
ATGTCAAAAAATGCCATGTCAAATTTCCATTAGAGATTTTAATAGGAGTGACCAAAATGAACAAA
CTATG
Found at i:75057839 original size:26 final size:26
Alignment explanation
Indices: 75057810--75057917 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
75057800 TGATACATAT
75057810 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75057836 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75057862 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75057888 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75057914 TGAT
1 TGAT
75057918 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75059625 original size:27 final size:26
Alignment explanation
Indices: 75059509--75059663 Score: 160
Period size: 27 Copynumber: 6.0 Consensus size: 26
75059499 GGAGGAAGCG
75059509 TCTGGTGGCTATGCCACAATTATCTG-
1 TCTGGTGGCTATGCCACAA-TATCTGT
*
75059535 ACTGGTGGCT-TGCCACATATATCTGT
1 TCTGGTGGCTATGCCACA-ATATCTGT
* *
75059561 CCTGGTGGCTATGCCACAATTATCTGA
1 TCTGGTGGCTATGCCACAA-TATCTGT
*
75059588 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTATGCCACA-ATATCTGT
75059615 TCTGGTGGC--T-CCACAATATCTGT
1 TCTGGTGGCTATGCCACAATATCTGT
* *
75059638 ATCTGGTGACT-TCGTCACAATATCTG
1 -TCTGGTGGCTAT-GCCACAATATCTG
75059664 GCAGCCTCGC
Statistics
Matches: 112, Mismatches: 8, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
23 8 0.07
24 13 0.12
25 15 0.13
26 20 0.18
27 55 0.49
28 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (26 bp):
TCTGGTGGCTATGCCACAATATCTGT
Found at i:75064602 original size:26 final size:26
Alignment explanation
Indices: 75064573--75064654 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
75064563 TGAAACAAAT
*
75064573 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75064599 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75064625 TGATAATGGTTTGGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75064651 TGAT
1 TGAT
75064655 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.29, C:0.06, G:0.27, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75065844 original size:8 final size:8
Alignment explanation
Indices: 75065831--75065860 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
75065821 AGATCGGCAC
75065831 AAGCCGAA
1 AAGCCGAA
75065839 AAGCCGAA
1 AAGCCGAA
*
75065847 ATGCCGAA
1 AAGCCGAA
75065855 AAGCCG
1 AAGCCG
75065861 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:75066313 original size:27 final size:25
Alignment explanation
Indices: 75066248--75066404 Score: 163
Period size: 27 Copynumber: 5.9 Consensus size: 25
75066238 GGAAGCGTCT
* *
75066248 TGGTGGCTATGCCACAATTATCTGAC
1 TGGTGGCTCTGCCACAA-TATCTGTC
75066274 TGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTCTGCCACA-ATATCTGT-C
*
75066301 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAA-TATCTG-TC
75066328 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACA-ATATCTG-TC
*
75066355 TGGTGGCTCTACCACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTG--TC
* *
75066382 TGGTGACT-TCGTCACAATATCTG
1 TGGTGGCTCT-GCCACAATATCTG
75066405 GCAACCTCGC
Statistics
Matches: 114, Mismatches: 10, Indels: 13
0.83 0.07 0.09
Matches are distributed among these distances:
26 30 0.26
27 82 0.72
28 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (25 bp):
TGGTGGCTCTGCCACAATATCTGTC
Found at i:75066376 original size:53 final size:54
Alignment explanation
Indices: 75066248--75066386 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 54
75066238 GGAAGCGTCT
75066248 TGGTGGCTATGCCACAATTATCTGA-CTGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
*
75066301 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
* *
75066355 TGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTG
75066387 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
53 31 0.38
54 50 0.62
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCC
Found at i:75067151 original size:48 final size:49
Alignment explanation
Indices: 75067079--75067176 Score: 180
Period size: 48 Copynumber: 2.0 Consensus size: 49
75067069 GCAATTTTCC
75067079 TACCTGGTGCCACAACTTCCATTCACTTTAACCTATAATGAAATTATCT
1 TACCTGGTGCCACAACTTCCATTCACTTTAACCTATAATGAAATTATCT
*
75067128 TACCTGGTG-CACAGCTTCCATTCACTTTAACCTATAATGAAATTATCT
1 TACCTGGTGCCACAACTTCCATTCACTTTAACCTATAATGAAATTATCT
75067176 T
1 T
75067177 TTAAAACACT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 39 0.81
49 9 0.19
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.36
Consensus pattern (49 bp):
TACCTGGTGCCACAACTTCCATTCACTTTAACCTATAATGAAATTATCT
Found at i:75069512 original size:83 final size:87
Alignment explanation
Indices: 75069380--75069555 Score: 324
Period size: 83 Copynumber: 2.1 Consensus size: 87
75069370 CTGTGTTTTC
75069380 GAGGAAGAATTTGTGTTCTGAGGGACTCTGATTTAAGGCAGACAATATTGAAGGAAGCTCATGGA
1 GAGGAAGAATTTGTGTTCTGAGGGACTCTGATTTAAGGCAGACAATATTGAAGGAAGCTCATGGA
75069445 GGACTTTGTGCCATGCAT-TTG
66 GGACTTTGTGCCATGCATCTTG
75069466 GAGGAAGAATTTGTGTTC-GA-GGACTCTGA-TTAAGGCAGACAATATTGAAGGAAGCTCATGGA
1 GAGGAAGAATTTGTGTTCTGAGGGACTCTGATTTAAGGCAGACAATATTGAAGGAAGCTCATGGA
75069528 GGACTTTGTGCCATGCATCTTG
66 GGACTTTGTGCCATGCATCTTG
75069550 GAGGAA
1 GAGGAA
75069556 CAAGTTGTAT
Statistics
Matches: 89, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
83 51 0.57
84 18 0.20
85 2 0.02
86 18 0.20
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (87 bp):
GAGGAAGAATTTGTGTTCTGAGGGACTCTGATTTAAGGCAGACAATATTGAAGGAAGCTCATGGA
GGACTTTGTGCCATGCATCTTG
Found at i:75071056 original size:26 final size:26
Alignment explanation
Indices: 75071014--75071069 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
75071004 TGATACAAAT
75071014 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75071040 TGATAATGGTTTGGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75071066 TGAT
1 TGAT
75071070 GGGCATTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75071767 original size:8 final size:8
Alignment explanation
Indices: 75071754--75071783 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
75071744 AGATCGGCAC
75071754 AAGCCGAA
1 AAGCCGAA
75071762 AAGCCGAA
1 AAGCCGAA
*
75071770 ATGCCGAA
1 AAGCCGAA
75071778 AAGCCG
1 AAGCCG
75071784 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:75072255 original size:32 final size:27
Alignment explanation
Indices: 75072173--75072259 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
75072163 AGGAAGCGTC
*
75072173 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
* *
75072200 CTGGTGGCTCTTCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
75072227 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
75072254 CTGGTG
1 CTGGTG
75072260 ACTTCGTCAC
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
26 7 0.13
27 45 0.85
28 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:75072270 original size:27 final size:26
Alignment explanation
Indices: 75072186--75072276 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 26
75072176 GTGGCTATGC
*
75072186 CACAATTATCTG-ATCTGGTGGCTCTT
1 CACAA-TATCTGTATCTGGTGGCTCGT
*
75072212 CCACATATATCTGT-TCTGGTGGCTCTGC
1 -CACA-ATATCTGTATCTGGTGGCTC-GT
*
75072240 CACAATATCTGTATCTGGTGACTTCGT
1 CACAATATCTGTATCTGGTGGC-TCGT
75072267 CACAATATCT
1 CACAATATCT
75072277 AGTAGCCTCG
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
26 8 0.15
27 44 0.80
28 3 0.05
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (26 bp):
CACAATATCTGTATCTGGTGGCTCGT
Found at i:75073489 original size:32 final size:31
Alignment explanation
Indices: 75073448--75073514 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 31
75073438 GAAATAGATA
75073448 CATGTGGCAAA-GAGAGTAATT-TTTTAGCAAAG
1 CATGTGGCAAATG-GAGT-ATTCTTTTAGC-AAG
75073480 CATGTGGCAAATGGAGTATTCTTTTAGCAAG
1 CATGTGGCAAATGGAGTATTCTTTTAGCAAG
75073511 CATG
1 CATG
75073515 GTCAGATATG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
31 10 0.30
32 22 0.67
33 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (31 bp):
CATGTGGCAAATGGAGTATTCTTTTAGCAAG
Found at i:75079517 original size:12 final size:12
Alignment explanation
Indices: 75079494--75079537 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
75079484 GTTGTGAAAG
*
75079494 AAGTGTTAGAGA
1 AAGTCTTAGAGA
*
75079506 AAGTCTTCGAGA
1 AAGTCTTAGAGA
*
75079518 GAAGTGTTAGAGA
1 -AAGTCTTAGAGA
75079531 AAGTCTT
1 AAGTCTT
75079538 TGAGGTTAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (12 bp):
AAGTCTTAGAGA
Found at i:75080320 original size:16 final size:15
Alignment explanation
Indices: 75080281--75080327 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
75080271 AATCCCTGTG
75080281 ATTTTTTTTATATTT
1 ATTTTTTTTATATTT
*
75080296 ATTTGTTTTTAT-GTT
1 ATTT-TTTTTATATTT
*
75080311 ATTTTATTTTATTTTT
1 ATTTT-TTTTATATTT
75080327 A
1 A
75080328 AAAGGGGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 1 0.04
15 16 0.59
16 10 0.37
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (15 bp):
ATTTTTTTTATATTT
Found at i:75082530 original size:48 final size:48
Alignment explanation
Indices: 75082461--75082598 Score: 188
Period size: 48 Copynumber: 2.9 Consensus size: 48
75082451 TAGGGTTATG
* *
75082461 TGTGATCCCATGTAAGACCATGT-TAGGGACATGGTATTGGCACCGATA
1 TGTGATCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCACCAATA
* *
75082509 TGTGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATA
* * * *
75082557 GGTAATCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
75082599 TCTTACTATG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
48 79 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATA
Found at i:75087042 original size:17 final size:19
Alignment explanation
Indices: 75087000--75087044 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
75086990 CTTTATTTTC
75087000 TTATTTATTGTTCTAATAT
1 TTATTTATTGTTCTAATAT
*
75087019 TTGATTTATTGTTC-CAT-T
1 TT-ATTTATTGTTCTAATAT
75087037 TTATTTAT
1 TTATTTAT
75087045 CTTAGTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 6 0.25
18 3 0.12
19 4 0.17
20 11 0.46
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.64
Consensus pattern (19 bp):
TTATTTATTGTTCTAATAT
Found at i:75089183 original size:17 final size:18
Alignment explanation
Indices: 75089161--75089194 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75089151 TGAATTGGGC
75089161 CGTGTG-GACCACACGGA
1 CGTGTGAGACCACACGGA
*
75089178 CGTGTGAGTCCACACGG
1 CGTGTGAGACCACACGG
75089195 GTGTGTGGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.29, G:0.35, T:0.15
Consensus pattern (18 bp):
CGTGTGAGACCACACGGA
Found at i:75094136 original size:40 final size:40
Alignment explanation
Indices: 75094079--75094288 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
75094069 CTAACGGGGT
* * *
75094079 TAAGTCCCAAAGACATTTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-TCCGGGC
* *
75094119 TAAGTCCCGAAGGCATTTGTGCTAGTTACTA-ATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-TCCGGGC
* * *
75094159 TAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
* *
75094199 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
* * * **
75094239 TAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
*
75094277 TAAATCCCGAAG
1 TAAGTCCCGAAG
75094289 ATAATTGGGT
Statistics
Matches: 147, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
38 12 0.08
39 16 0.11
40 118 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
Found at i:75101251 original size:40 final size:40
Alignment explanation
Indices: 75101202--75101279 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
75101192 CATTCTTTCA
* *
75101202 CAAAAAAATGATATCAATAATATCCTTTCTTCTATTGTTT
1 CAAAAAAATGATATCAAGAATATCCTTTCTACTATTGTTT
* *
75101242 CAAAAAAATGATATCAAGGATATTCTTTCTACTATTGT
1 CAAAAAAATGATATCAAGAATATCCTTTCTACTATTGT
75101280 CAAATTACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (40 bp):
CAAAAAAATGATATCAAGAATATCCTTTCTACTATTGTTT
Found at i:75112427 original size:24 final size:24
Alignment explanation
Indices: 75112395--75112441 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
75112385 ATGCACAGCC
*
75112395 AGAAACAGATACAATTTCAGATTT
1 AGAAACAGATACAAATTCAGATTT
* *
75112419 AGAATCAGATCCAAATTCAGATT
1 AGAAACAGATACAAATTCAGATT
75112442 ACAAAAACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.28
Consensus pattern (24 bp):
AGAAACAGATACAAATTCAGATTT
Found at i:75112954 original size:34 final size:34
Alignment explanation
Indices: 75112905--75113016 Score: 127
Period size: 34 Copynumber: 3.3 Consensus size: 34
75112895 TGGGCCCACA
* **
75112905 TGCCCTTGTGGGCCCATATTCCCAATTTGACCTT
1 TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
* *
75112939 TTCCCGTGTGGGCCCATACGCCCAATTTGCCCTT
1 TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
* * *
75112973 TGCCCGTGTGGGCCCACAC-CTCAATTTGCCCTT
1 TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
* *
75113006 TGTCCATGTGG
1 TGCCCGTGTGG
75113017 CCTACACGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
33 22 0.32
34 46 0.68
ACGTcount: A:0.12, C:0.35, G:0.21, T:0.31
Consensus pattern (34 bp):
TGCCCGTGTGGGCCCATACGCCCAATTTGACCTT
Found at i:75123357 original size:28 final size:28
Alignment explanation
Indices: 75123325--75123385 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
75123315 GAGGAGTGAG
75123325 TTTATGAAAGCTCAATGTGAGTCTAAGA
1 TTTATGAAAGCTCAATGTGAGTCTAAGA
75123353 TTTATGAAAGCTCAATGTGAGTCTAAGA
1 TTTATGAAAGCTCAATGTGAGTCTAAGA
*
75123381 GTTAT
1 TTTAT
75123386 CTAAGCAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (28 bp):
TTTATGAAAGCTCAATGTGAGTCTAAGA
Found at i:75126636 original size:46 final size:48
Alignment explanation
Indices: 75126453--75126766 Score: 221
Period size: 46 Copynumber: 6.7 Consensus size: 48
75126443 TTATTTGTGT
* * * * *
75126453 GCCAGAGTAAGACATGTTTGGGACAT-GCATCAGCCAC-ATTATG-AGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTACGA-GATGTAGA
* *
75126499 GCCAGTGTAAGACCATGCCTGGGACATGGCATCGGCATTA--AGACG-AGA
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC--TACGAGATGTAGA
* *
75126547 GCTAGTGTAAGACATGCCTGGGACAT-GCATCGGCCT-CGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGG-CTACGAGATGTAGA
*
75126593 GCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCTACGAGATGT---
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTACGAGATGTAGA
* * * * *
75126637 GTCAGTGTAAGACCATATTTGGGACATGGCATCAGC-ACGAATATGTGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCTACG-AGATGT-AGA
* * ** *
75126687 GCTAGTGTAAGAACATGTTTGGGACATGGCATC-G--ACTTGATGGATGA
1 GCCAGTGTAAG-ACATGTCTGGGACATGGCATCGGCTACGAGATGTA-GA
*
75126734 GCCAGTGTAAGACGATGTATGGGACATGGCATC
1 GCCAGTGTAAGAC-ATGTCTGGGACATGGCATC
75126767 AACATTATAC
Statistics
Matches: 222, Mismatches: 27, Indels: 37
0.78 0.09 0.13
Matches are distributed among these distances:
44 11 0.05
45 17 0.08
46 76 0.34
47 61 0.27
48 25 0.11
49 2 0.01
50 29 0.13
51 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTACGAGATGTAGA
Found at i:75130502 original size:15 final size:15
Alignment explanation
Indices: 75130477--75130520 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
75130467 TATAGTTTCG
75130477 TATCTTGGGATTTCTC
1 TATCTT-GGATTTCTC
*
75130493 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
75130508 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
75130521 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 10 0.38
16 6 0.23
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:75133189 original size:46 final size:45
Alignment explanation
Indices: 75133137--75133313 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 45
75133127 TTGAGACAAG
*
75133137 AGCTAGTGTAAGACATGTCTGGGACATGCCTCGGCCT-CGAGATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT
* *
75133182 AAGCTAGTGTAAGACATGTCTGGGATATGCATCGGCTATGAGATGT
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT
* *
75133228 -G-TCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGAATATGT
1 AGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG-AGATGT
* * *
75133274 GAGAGCTAGTGTAATAACATGTCTTGGAAATGGCATCGGC
1 ---AGCTAGTGTAA-GACATGTCTGGGACAT-GCATCGGC
75133314 ATTATACGCT
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 10 0.09
45 17 0.16
46 51 0.47
50 28 0.26
51 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT
Found at i:75140461 original size:14 final size:13
Alignment explanation
Indices: 75140433--75140458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75140423 ATTTTTTTGC
75140433 CTTTTTTAAAAAA
1 CTTTTTTAAAAAA
75140446 CTTTTTTAAAAAA
1 CTTTTTTAAAAAA
75140459 ACTCCAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
CTTTTTTAAAAAA
Found at i:75144721 original size:50 final size:52
Alignment explanation
Indices: 75144635--75144831 Score: 167
Period size: 50 Copynumber: 3.9 Consensus size: 52
75144625 ATTATAGAAA
* * *
75144635 ATCAAATATAAGATCACACATATGTGCATACCTATATGGCTGAATATGCAAG
1 ATCAAATATAACATCACACATATGTACATACCTATATGGCCGAATATGCAAG
* * * *
75144687 ATCAAATTTAACATCA-A-ATATGTACTTACTTATATGGCCGAATATACAA-
1 ATCAAATATAACATCACACATATGTACATACCTATATGGCCGAATATGCAAG
* * * * * * *
75144736 ATTTAAATATAATAT--CACATTTGTGCATACCT-TCATGGCCAAATATTCAAA
1 A-TCAAATATAACATCACACATATGTACATACCTAT-ATGGCCGAATATGCAAG
* * *
75144787 ATCCAATATAACAT--CACATATGTACATACCTATGTGGCTGAATAT
1 ATCAAATATAACATCACACATATGTACATACCTATATGGCCGAATAT
75144832 ATACAAGGTC
Statistics
Matches: 115, Mismatches: 24, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
49 3 0.03
50 95 0.83
51 3 0.03
52 14 0.12
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (52 bp):
ATCAAATATAACATCACACATATGTACATACCTATATGGCCGAATATGCAAG
Found at i:75144765 original size:100 final size:100
Alignment explanation
Indices: 75144651--75144832 Score: 240
Period size: 100 Copynumber: 1.8 Consensus size: 100
75144641 TATAAGATCA
** * * *
75144651 CACATATGTGCATACCTAT-ATGGCTGAATATGCAAGATCAAATTTAACATCAAATATGTACTTA
1 CACATATGTGCATACCT-TCATGGCCAAATATGCAAAATCAAATATAACATCAAATATGTACATA
*
75144715 CTTATATGGCCGAATATACAAATTTAAATATAATAT
65 CCTATATGGCCGAATATACAAATTTAAATATAATAT
* * * *
75144751 CACATTTGTGCATACCTTCATGGCCAAATATTCAAAATCCAATATAACATCACATATGTACATAC
1 CACATATGTGCATACCTTCATGGCCAAATATGCAAAATCAAATATAACATCAAATATGTACATAC
* *
75144816 CTATGTGGCTGAATATA
66 CTATATGGCCGAATATA
75144833 TACAAGGTCA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
99 1 0.01
100 68 0.99
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (100 bp):
CACATATGTGCATACCTTCATGGCCAAATATGCAAAATCAAATATAACATCAAATATGTACATAC
CTATATGGCCGAATATACAAATTTAAATATAATAT
Found at i:75155775 original size:46 final size:47
Alignment explanation
Indices: 75155693--75155858 Score: 135
Period size: 46 Copynumber: 3.6 Consensus size: 47
75155683 CGTTGCTGAT
* * * * *
75155693 GCATGTCCTAAACATGTCTTACACTAGCTTAAGTCTCGAGGCCGA-A
1 GCATGTCCCAGACATGTTTTACACTAGCCTAAGTCTCAAGGCCGATA
* *
75155739 GCATGTCCCAGACATGTTTTACACTAGCACT-CGTCTCAATGCCGATA
1 GCATGTCCCAGACATGTTTTACACTAGC-CTAAGTCTCAAGGCCGATA
* * * * *
75155786 TCATGTCCCAGACATGGTTTTACACTGGCTCTCA-TAAT-ATGGCCGATA
1 GCATGTCCCAGACAT-GTTTTACACTAGC-CTAAGT-CTCAAGGCCGATA
* *
75155834 -CATGTCCCAGGCATGTCTTACACTA
1 GCATGTCCCAGACATGTTTTACACTA
75155859 TCTCACAATA
Statistics
Matches: 98, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
46 45 0.46
47 29 0.30
48 23 0.23
49 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
GCATGTCCCAGACATGTTTTACACTAGCCTAAGTCTCAAGGCCGATA
Found at i:75155838 original size:47 final size:48
Alignment explanation
Indices: 75155732--75155858 Score: 140
Period size: 47 Copynumber: 2.7 Consensus size: 48
75155722 TAAGTCTCGA
*
75155732 GGCCGA-AGCATGTCCCAGACATGTTTTACACTAGCACTCGTCTCAAT
1 GGCCGATAGCATGTCCCAGACATGTTTTACACTAGCACTCGTCTAAAT
* *
75155779 -GCCGATATCATGTCCCAGACATGGTTTTACACT-G-GCTC-TCATAATAT
1 GGCCGATAGCATGTCCCAGACAT-GTTTTACACTAGCACTCGTC-TAA-AT
* *
75155826 GGCCGATA-CATGTCCCAGGCATGTCTTACACTA
1 GGCCGATAGCATGTCCCAGACATGTTTTACACTA
75155859 TCTCACAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
45 2 0.03
46 19 0.28
47 31 0.45
48 17 0.25
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GGCCGATAGCATGTCCCAGACATGTTTTACACTAGCACTCGTCTAAAT
Found at i:75173571 original size:85 final size:85
Alignment explanation
Indices: 75173448--75173683 Score: 310
Period size: 85 Copynumber: 2.8 Consensus size: 85
75173438 TTGTTGTGGG
* *
75173448 TGCACAACATATTTGAAGATTAAACAAACTGCCACTTGGTTCATGATTGAACCACATATTTGTAG
1 TGCACAACATATTTGCATATTAAACAAACTGCCACTTGGTTCATGATTGAACCACATATTTGTAG
75173513 TTACTACCACTTGTTATGAA
66 TTACTACCACTTGTTATGAA
* * * * *
75173533 TGCACAACATATTTTCATATTAAACAAAATGCCACTTGGTTCATGATCGAACCACATATATGCAG
1 TGCACAACATATTTGCATATTAAACAAACTGCCACTTGGTTCATGATTGAACCACATATTTGTAG
** * *
75173598 TTACTGTCACTTGTTGTGAG
66 TTACTACCACTTGTTATGAA
* * * * * *
75173618 TACACAACATATTTGCATACTAAACTAACTGTCACTTGGTTCGTAATTGAACCACACTATTTGTA
1 TGCACAACATATTTGCATATTAAACAAACTGCCACTTGGTTCATGATTGAACCACA-TATTTGTA
75173683 G
65 G
75173684 ATTAAATTGC
Statistics
Matches: 128, Mismatches: 22, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
85 121 0.95
86 7 0.05
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (85 bp):
TGCACAACATATTTGCATATTAAACAAACTGCCACTTGGTTCATGATTGAACCACATATTTGTAG
TTACTACCACTTGTTATGAA
Found at i:75177890 original size:22 final size:22
Alignment explanation
Indices: 75177865--75177906 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
75177855 GAGTACAACC
*
75177865 CGAATACAACCCATACAGAACT
1 CGAATACAACCCATAAAGAACT
75177887 CGAATACAACCCATAAAGAA
1 CGAATACAACCCATAAAGAA
75177907 ACAAAACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.29, G:0.10, T:0.12
Consensus pattern (22 bp):
CGAATACAACCCATAAAGAACT
Found at i:75178529 original size:16 final size:15
Alignment explanation
Indices: 75178508--75178537 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75178498 GAAATGTTTT
75178508 TGATTAATTGATATTC
1 TGATTAATTG-TATTC
75178524 TGATTAATTGTATT
1 TGATTAATTGTATT
75178538 TATTTATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.03, G:0.13, T:0.53
Consensus pattern (15 bp):
TGATTAATTGTATTC
Found at i:75180771 original size:22 final size:24
Alignment explanation
Indices: 75180729--75180772 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
75180719 ATGTATTTGC
*
75180729 TTATTATTTAAGTAATAATAATTA
1 TTATTATATAAGTAATAATAATTA
75180753 TTATTATATAA-T-ATAATAAT
1 TTATTATATAAGTAATAATAAT
75180773 ATAATAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 1 0.05
24 10 0.53
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TTATTATATAAGTAATAATAATTA
Found at i:75180816 original size:28 final size:27
Alignment explanation
Indices: 75180784--75180843 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
75180774 TAATAACATA
75180784 AAATAA-AACAAATAAAAGAATGAAAAAG
1 AAATAATAA-AAATAAAAGAA-GAAAAAG
* * *
75180812 AAATAATAAACATAATAGAAGAAAACG
1 AAATAATAAAAATAAAAGAAGAAAAAG
75180839 AAATA
1 AAATA
75180844 GGGAGAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 11 0.39
28 15 0.54
29 2 0.07
ACGTcount: A:0.72, C:0.05, G:0.10, T:0.13
Consensus pattern (27 bp):
AAATAATAAAAATAAAAGAAGAAAAAG
Found at i:75181777 original size:25 final size:25
Alignment explanation
Indices: 75181749--75181816 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 25
75181739 ATTTTTTATT
75181749 TTGATGAATATTTTGAGTTATGCCA
1 TTGATGAATATTTTGAGTTATGCCA
*
75181774 TTGATGAATATTTTGGGTTATGCCA
1 TTGATGAATATTTTGAGTTATGCCA
*
75181799 TTGATGAATA-ATTGAGTT
1 TTGATGAATATTTTGAGTT
75181817 TTGTGATGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 6 0.15
25 34 0.85
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (25 bp):
TTGATGAATATTTTGAGTTATGCCA
Found at i:75181866 original size:15 final size:15
Alignment explanation
Indices: 75181846--75181876 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75181836 ATTATGAAAA
75181846 ATATGTTTTGGATTG
1 ATATGTTTTGGATTG
*
75181861 ATATGTTTTGTATTG
1 ATATGTTTTGGATTG
75181876 A
1 A
75181877 AATTTTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.55
Consensus pattern (15 bp):
ATATGTTTTGGATTG
Found at i:75182522 original size:43 final size:42
Alignment explanation
Indices: 75182472--75182588 Score: 164
Period size: 43 Copynumber: 2.7 Consensus size: 42
75182462 TGTGTATTCG
75182472 TGTAAGACCACGTCTGGGACGTAGGCATCGTTATGTGATTACA
1 TGTAAGACCACGTCTGGGACGT-GGCATCGTTATGTGATTACA
* *
75182515 TGTAAGACC-CTGTCTGGGATAGTGGCATCGATATGTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTGGCATCGTTATGTGATTACA
*
75182558 TGTAAGACCACATCTGGGACGTTGGCATCGT
1 TGTAAGACCACGTCTGGGACG-TGGCATCGT
75182589 ATGATATGTG
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
42 2 0.03
43 60 0.92
44 3 0.05
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTGGCATCGTTATGTGATTACA
Found at i:75182778 original size:19 final size:18
Alignment explanation
Indices: 75182754--75182797 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
75182744 GATACTAATT
75182754 ATATATGATGCAAATGAAA
1 ATATAT-ATGCAAATGAAA
**
75182773 ATATATATGCGTATGAAA
1 ATATATATGCAAATGAAA
75182791 AGTATAT
1 A-TATAT
75182798 TCGGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.32
Consensus pattern (18 bp):
ATATATATGCAAATGAAA
Found at i:75185094 original size:5 final size:5
Alignment explanation
Indices: 75185084--75185108 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75185074 TTGTAGTATC
75185084 GAATT GAATT GAATT GAATT GAATT
1 GAATT GAATT GAATT GAATT GAATT
75185109 ATGAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
GAATT
Found at i:75185698 original size:16 final size:15
Alignment explanation
Indices: 75185671--75185719 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
75185661 AGTTAATATT
75185671 TATATATGATTTAAAG
1 TATATAT-ATTTAAAG
*
75185687 TATATGATATTTAATG
1 TATAT-ATATTTAAAG
*
75185703 T-TATTTATTTAAAG
1 TATATATATTTAAAG
75185717 TAT
1 TAT
75185720 TCGGATTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 9 0.32
15 4 0.14
16 13 0.46
17 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (15 bp):
TATATATATTTAAAG
Found at i:75190780 original size:13 final size:12
Alignment explanation
Indices: 75190755--75190791 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
75190745 TAGTTTTAAT
75190755 AATAAAAAATAA
1 AATAAAAAATAA
75190767 AATAAAATAATAA
1 AATAAAA-AATAA
*
75190780 AATAATAAATAA
1 AATAAAAAATAA
75190792 GTATTCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AATAAAAAATAA
Found at i:75194500 original size:29 final size:30
Alignment explanation
Indices: 75194455--75194513 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
75194445 TTCCCGAGCC
75194455 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
75194485 TAGGGG-AAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
75194514 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 19 0.73
30 6 0.23
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:75195240 original size:49 final size:50
Alignment explanation
Indices: 75195160--75195405 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
75195150 AGCTATTGTG
* *
75195160 AGGTCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
75195210 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
75195260 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
75195310 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
75195360 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
75195406 GCTTCGGCTA
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:75195297 original size:28 final size:28
Alignment explanation
Indices: 75195265--75195348 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
75195255 AACTTCGATC
75195265 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
75195293 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
75195315 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
75195343 ACGTGT
1 ACGTGT
75195349 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:75202259 original size:65 final size:65
Alignment explanation
Indices: 75202155--75202285 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
75202145 AACTTCAACA
75202155 TTTAATGTAATTAATGATAGTATTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
1 TTTAATGTAATTAATGATAGTATTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
* *
75202220 TTTAATGTAATTAATGATAGTGTTAAATATAAAATTAGTACTCAAATTTGTTCGCTTCTCCCATG
1 TTTAATGTAATTAATGATAGTATTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
75202285 T
1 T
75202286 AACACCACAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.41
Consensus pattern (65 bp):
TTTAATGTAATTAATGATAGTATTAAATATAAAATTAGTACTCAAACTTGTTCGCTTCTCCCATG
Found at i:75203431 original size:6 final size:6
Alignment explanation
Indices: 75203420--75203494 Score: 50
Period size: 6 Copynumber: 12.7 Consensus size: 6
75203410 TTATACCTCA
* * *
75203420 TTTTTC TTTTTC TTTTTTC CTTTTC TTTTTA TTTTAT- TTTTT- ATTTTC
1 TTTTTC TTTTTC -TTTTTC TTTTTC TTTTTC TTTT-TC TTTTTC TTTTTC
* *
75203468 -TCTCC TTTTTCC TTTTTC -TTTTC TTTT
1 TTTTTC TTTTT-C TTTTTC TTTTTC TTTT
75203495 CTTATTTTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 13 0.24
6 29 0.53
7 13 0.24
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:75203512 original size:23 final size:23
Alignment explanation
Indices: 75203426--75203513 Score: 61
Period size: 24 Copynumber: 3.6 Consensus size: 23
75203416 CTCATTTTTC
* * *
75203426 TTTTTCTTTTTTCCTTTTCTTTT
1 TTTTTATTTTTTTCTTTTCTTAT
**
75203449 TATTTTATTTTTTAT-TTTCTCTCCT
1 T-TTTTATTTTTT-TCTTT-TCTTAT
*
75203474 TTTTCCTTTTTCTTTTCTTTTCTTAT
1 TTTT--TATTT-TTTTCTTTTCTTAT
75203500 TTTTTATTTTTTTC
1 TTTTTATTTTTTTC
75203514 AGGTCTGCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 14
0.69 0.11 0.19
Matches are distributed among these distances:
23 6 0.12
24 20 0.40
25 5 0.10
26 13 0.26
27 6 0.12
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTTATTTTTTTCTTTTCTTAT
Found at i:75203543 original size:23 final size:23
Alignment explanation
Indices: 75203517--75203562 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
75203507 TTTTTTCAGG
**
75203517 TCTGCTTTTTCATCATTCTTCTT
1 TCTGCTTCATCATCATTCTTCTT
*
75203540 TCTGCTTCATCATCTTTCTTCTT
1 TCTGCTTCATCATCATTCTTCTT
75203563 CCTTTTTTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.28, G:0.04, T:0.59
Consensus pattern (23 bp):
TCTGCTTCATCATCATTCTTCTT
Found at i:75206353 original size:30 final size:30
Alignment explanation
Indices: 75206317--75206374 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
75206307 GAGTTTTCAA
* * *
75206317 GATCCACATAGGCTGGGCACACGCCCATGT
1 GATCCACACAGGCAGGCCACACGCCCATGT
*
75206347 GATCCACACGGGCAGGCCACACGCCCAT
1 GATCCACACAGGCAGGCCACACGCCCAT
75206375 ATGCCAGCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.24, C:0.38, G:0.26, T:0.12
Consensus pattern (30 bp):
GATCCACACAGGCAGGCCACACGCCCATGT
Found at i:75208492 original size:16 final size:16
Alignment explanation
Indices: 75208457--75208523 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 16
75208447 CAGACCTAGA
*
75208457 AAAAGA-AAAATAAA-
1 AAAAGAGAAAAGAAAT
75208471 AAAAGAGAAAAGAAAT
1 AAAAGAGAAAAGAAAT
* * **
75208487 AGAAGAGGAGGGAAAT
1 AAAAGAGAAAAGAAAT
*
75208503 AAAAGA-AAAAGAAAA
1 AAAAGAGAAAAGAAAT
75208518 AAAAGA
1 AAAAGA
75208524 TATAATGAGA
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
14 6 0.15
15 18 0.44
16 17 0.41
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (16 bp):
AAAAGAGAAAAGAAAT
Found at i:75211131 original size:40 final size:40
Alignment explanation
Indices: 75211087--75211165 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
75211077 TTATAGTACC
* * *
75211087 ACTTGGTGTGTAGGG-TTGGATGGGTCGATTTTATCCCCAT
1 ACTTGGTATGTAGGGCTGGGA-AGGTCGATTTTATCCCCAT
75211127 ACTTGGTATGTAGGGCTGGGAAGGTCGATTTTATCCCCA
1 ACTTGGTATGTAGGGCTGGGAAGGTCGATTTTATCCCCA
75211166 CATGGTGTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 31 0.89
41 4 0.11
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (40 bp):
ACTTGGTATGTAGGGCTGGGAAGGTCGATTTTATCCCCAT
Found at i:75221353 original size:16 final size:16
Alignment explanation
Indices: 75221301--75221355 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 16
75221291 TATTATGTAA
*
75221301 TAATATTAAAAGTGATAT
1 TAATA-TAATAGT-ATAT
*
75221319 TAAT-TAAATATTA-AT
1 TAATAT-AATAGTATAT
75221334 TAATATAATAGTATAT
1 TAATATAATAGTATAT
75221350 TAATAT
1 TAATAT
75221356 GAAATTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 12 0.39
16 11 0.35
17 4 0.13
18 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (16 bp):
TAATATAATAGTATAT
Found at i:75221353 original size:31 final size:33
Alignment explanation
Indices: 75221301--75221368 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 33
75221291 TATTATGTAA
75221301 TAATATTAAAAGTGATATTAAT-TAAATATTAAT
1 TAATATTAAAAGTGATATTAATATAAA-ATTAAT
* *
75221334 TAATA-TAATAGT-ATATTAATATGAAATTAAT
1 TAATATTAAAAGTGATATTAATATAAAATTAAT
75221365 TAAT
1 TAAT
75221369 TTGGTCATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 18 0.56
32 9 0.28
33 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (33 bp):
TAATATTAAAAGTGATATTAATATAAAATTAAT
Found at i:75226122 original size:44 final size:44
Alignment explanation
Indices: 75226074--75226210 Score: 111
Period size: 44 Copynumber: 3.1 Consensus size: 44
75226064 CAAAGGATAT
75226074 AAACTTACTATTATCATAAACTTATATGCTAACATAATTCCAAC
1 AAACTTACTATTATCATAAACTTATATGCTAACATAATTCCAAC
* * * * * **** *
75226118 AAACTAAC-A-CATAATAAGCATT-TAT-CTCATGCATAAAAGGATAT
1 AAACTTACTATTATCATAAAC-TTATATGCT-A-ACATAATTCCA-AC
*
75226162 AAACTTACTATTATCAAAAACTTATATGCTAACATAATTCCAAC
1 AAACTTACTATTATCATAAACTTATATGCTAACATAATTCCAAC
75226206 AAACT
1 AAACT
75226211 AACACATAAT
Statistics
Matches: 64, Mismatches: 21, Indels: 16
0.63 0.21 0.16
Matches are distributed among these distances:
41 2 0.03
42 11 0.17
43 9 0.14
44 21 0.33
45 9 0.14
46 10 0.16
47 2 0.03
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.31
Consensus pattern (44 bp):
AAACTTACTATTATCATAAACTTATATGCTAACATAATTCCAAC
Found at i:75226200 original size:88 final size:88
Alignment explanation
Indices: 75226051--75226222 Score: 326
Period size: 88 Copynumber: 2.0 Consensus size: 88
75226041 TCATGTGGTA
* *
75226051 TTATCTCATGCATCAAAGGATATAAACTTACTATTATCATAAACTTATATGCTAACATAATTCCA
1 TTATCTCATGCATAAAAGGATATAAACTTACTATTATCAAAAACTTATATGCTAACATAATTCCA
75226116 ACAAACTAACACATAATAAGCAT
66 ACAAACTAACACATAATAAGCAT
75226139 TTATCTCATGCATAAAAGGATATAAACTTACTATTATCAAAAACTTATATGCTAACATAATTCCA
1 TTATCTCATGCATAAAAGGATATAAACTTACTATTATCAAAAACTTATATGCTAACATAATTCCA
75226204 ACAAACTAACACATAATAA
66 ACAAACTAACACATAATAA
75226223 ACACTTATGT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 82 1.00
ACGTcount: A:0.46, C:0.19, G:0.05, T:0.30
Consensus pattern (88 bp):
TTATCTCATGCATAAAAGGATATAAACTTACTATTATCAAAAACTTATATGCTAACATAATTCCA
ACAAACTAACACATAATAAGCAT
Found at i:75226229 original size:44 final size:44
Alignment explanation
Indices: 75226093--75226230 Score: 113
Period size: 44 Copynumber: 3.1 Consensus size: 44
75226083 ATTATCATAA
*
75226093 ACTTATATGCTAACATAATTCCAACAAACTAACACATAATAAGC
1 ACTTATATGCTAACATAATTCCAACAAACTAACACATAATAAAC
* **** * * * * *
75226137 A-TT-TAT-CTCATGCATAAAAGGATATAAACTTAC-TATTATCAAAA
1 ACTTATATGCT-A-ACATAATTCCA-ACAAACTAACACATAAT-AAAC
75226181 ACTTATATGCTAACATAATTCCAACAAACTAACACATAATAAAC
1 ACTTATATGCTAACATAATTCCAACAAACTAACACATAATAAAC
75226225 ACTTAT
1 ACTTAT
75226231 GTGATTACCA
Statistics
Matches: 65, Mismatches: 21, Indels: 16
0.64 0.21 0.16
Matches are distributed among these distances:
41 2 0.03
42 4 0.06
43 12 0.18
44 29 0.45
45 12 0.18
46 4 0.06
47 2 0.03
ACGTcount: A:0.47, C:0.20, G:0.04, T:0.29
Consensus pattern (44 bp):
ACTTATATGCTAACATAATTCCAACAAACTAACACATAATAAAC
Found at i:75228048 original size:50 final size:51
Alignment explanation
Indices: 75227929--75228060 Score: 149
Period size: 52 Copynumber: 2.6 Consensus size: 51
75227919 GTTGTGAGAA
* * ** **
75227929 CACATGTGTAGTACTATGTGTAGGCTACTGTGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGG-TTTAGGT
* *
75227981 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGT
* * *
75228031 CGCATGTGTAGTACTAAGTACTGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
75228061 TACGTACCTG
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 32 0.47
52 36 0.53
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGT
Found at i:75230274 original size:39 final size:39
Alignment explanation
Indices: 75230231--75230342 Score: 163
Period size: 39 Copynumber: 2.9 Consensus size: 39
75230221 GCATATTTCT
* *
75230231 AGCACGTAGCCTACGAACCTTAAGTCCGGTTATAATTCC
1 AGCACATAGCCTACGAACCTTAAGTCCGGATATAATTCC
* *
75230270 AGCACATAGCCTACGGACTTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTACGAACCTTAAGTCCGGATATAATTCC
*
75230309 AGCACATAGCCTGC-AGACCTTAAGTCCGGATATA
1 AGCACATAGCCTACGA-ACCTTAAGTCCGGATATA
75230343 CTTCATCACT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (39 bp):
AGCACATAGCCTACGAACCTTAAGTCCGGATATAATTCC
Found at i:75245360 original size:10 final size:9
Alignment explanation
Indices: 75245331--75245413 Score: 58
Period size: 7 Copynumber: 10.0 Consensus size: 9
75245321 TTTTGAGCAC
75245331 TTTAT-ATT
1 TTTATAATT
75245339 TTTATAAATT
1 TTTAT-AATT
*
75245349 TTAATAATT
1 TTTATAATT
75245358 TTT-TAATT
1 TTTATAATT
*
75245366 TTTATGGATT
1 TTTAT-AATT
75245376 TTT-TAA-T
1 TTTATAATT
75245383 TTT-TAA-T
1 TTTATAATT
75245390 TTT-TAA--
1 TTTATAATT
*
75245396 TTTCTAATT
1 TTTATAATT
75245405 TTTATAATT
1 TTTATAATT
75245414 ATGATCAGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
6 3 0.05
7 17 0.27
8 14 0.22
9 16 0.25
10 13 0.21
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTATAATT
Found at i:75245369 original size:7 final size:7
Alignment explanation
Indices: 75245357--75245408 Score: 59
Period size: 7 Copynumber: 6.9 Consensus size: 7
75245347 TTTTAATAAT
75245357 TTTTTAA
1 TTTTTAA
75245364 TTTTTATGGA
1 TTTTTA---A
75245374 TTTTTTAA
1 T-TTTTAA
75245382 TTTTTAA
1 TTTTTAA
75245389 TTTTTAA
1 TTTTTAA
*
75245396 TTTCTAA
1 TTTTTAA
75245403 TTTTTA
1 TTTTTA
75245409 TAATTATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 30 0.77
8 2 0.05
10 2 0.05
11 5 0.13
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (7 bp):
TTTTTAA
Found at i:75248934 original size:13 final size:13
Alignment explanation
Indices: 75248918--75248947 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
75248908 AAGTGCTGCA
75248918 AAAAATGCTTATG
1 AAAAATGCTTATG
*
75248931 AAAAATGCTTTTG
1 AAAAATGCTTATG
75248944 AAAA
1 AAAA
75248948 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:75250546 original size:16 final size:18
Alignment explanation
Indices: 75250509--75250543 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
75250499 AATACTAAGA
75250509 ATTT-TATTAAATTATAT
1 ATTTATATTAAATTATAT
75250526 ATTTATATTAAATTATAT
1 ATTTATATTAAATTATAT
75250544 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATATTAAATTATAT
Found at i:75250555 original size:16 final size:17
Alignment explanation
Indices: 75250516--75250561 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
75250506 AGAATTTTAT
* *
75250516 TAAATTATATATTTATAT
1 TAAATTATAT-TTAATAA
75250534 TAAATTATATTTAATAA
1 TAAATTATATTTAATAA
75250551 T-AATTAT-TTTA
1 TAAATTATATTTA
75250562 GATTATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 4 0.15
16 6 0.23
17 6 0.23
18 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAATTATATTTAATAA
Found at i:75250557 original size:26 final size:25
Alignment explanation
Indices: 75250528--75250705 Score: 77
Period size: 26 Copynumber: 7.2 Consensus size: 25
75250518 AATTATATAT
75250528 TTATATTAAATTATATTTAATAATAA
1 TTATATTAAATTATATTTAATAAT-A
* * * *
75250554 TTATTTTAGATTATATTTTATAGTA
1 TTATATTAAATTATATTTAATAATA
*
75250579 TTATA-T--ATTATGATTTTAGTAA-A
1 TTATATTAAATTAT-A-TTTAATAATA
* *
75250602 TTCATA-TAAGAATAT-TTTAATATTA
1 TT-ATATTAA-ATTATATTTAATAATA
** ** * * *
75250627 AGA-ATTTTATTA-AATT-ATATTT
1 TTATATTAAATTATATTTAATAATA
*
75250649 TTTTATTAAATTATATTTAATAATTA
1 TTATATTAAATTATATTTAATAA-TA
* * *
75250675 TTATTTTAAATTATATTTTATACTA
1 TTATATTAAATTATATTTAATAATA
75250700 TTATAT
1 TTATAT
75250706 ATTATAATTT
Statistics
Matches: 108, Mismatches: 31, Indels: 27
0.65 0.19 0.16
Matches are distributed among these distances:
22 10 0.09
23 17 0.16
24 21 0.19
25 16 0.15
26 40 0.37
27 4 0.04
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (25 bp):
TTATATTAAATTATATTTAATAATA
Found at i:75250652 original size:18 final size:18
Alignment explanation
Indices: 75250631--75250666 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
75250621 ATATTAAGAA
75250631 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
75250649 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
75250667 AATAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTAAATTATATTT
Found at i:75250673 original size:13 final size:13
Alignment explanation
Indices: 75250657--75250714 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
75250647 TTTTTTATTA
*
75250657 AATTATATTTAAT
1 AATTATATTTTAT
75250670 AATTATTATTTTA-
1 AATTA-TATTTTAT
75250683 AATTATATTTTAT
1 AATTATATTTTAT
*
75250696 ACTATTATATATTAT
1 A--ATTATATTTTAT
75250711 AATT
1 AATT
75250715 TTAGTAAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
12 7 0.18
13 14 0.36
14 6 0.15
15 12 0.31
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
AATTATATTTTAT
Found at i:75250674 original size:18 final size:18
Alignment explanation
Indices: 75250635--75250674 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
75250625 TAAGAATTTT
** *
75250635 ATTAAATTATATTTTTTT
1 ATTAAATTATATTTAATA
75250653 ATTAAATTATATTTAATA
1 ATTAAATTATATTTAATA
75250671 ATTA
1 ATTA
75250675 TTATTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTAAATTATATTTAATA
Found at i:75250690 original size:121 final size:120
Alignment explanation
Indices: 75250432--75250739 Score: 528
Period size: 121 Copynumber: 2.6 Consensus size: 120
75250422 CCACAAAATC
*
75250432 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCGTATAAGAATAT
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
75250497 TTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
66 TTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
75250552 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA-
* * *
75250617 TTTAATATTAAGAATTTTATTAAATTATATTTTTTTATTAAATTATATTTAATAAT
65 TTTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
* * * *
75250673 TATTATTTTAAATTATATTTTATACTATTATATATTATAATTTTAGTAAATTCATATAAGAAT-T
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
75250737 TTA
66 TTA
75250740 TTAAATTATA
Statistics
Matches: 179, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
119 4 0.02
120 63 0.35
121 112 0.63
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (120 bp):
AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
TTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
Found at i:75251010 original size:16 final size:16
Alignment explanation
Indices: 75250989--75251058 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
75250979 TTGATTTGCT
75250989 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
75251005 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
75251021 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
75251037 ATTACGCCTCTAATCC
1 ATTACACCTCTAATCC
*
75251053 AATACA
1 ATTACA
75251059 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.31, C:0.36, G:0.01, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:75255656 original size:20 final size:20
Alignment explanation
Indices: 75255627--75255671 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
75255617 AACACATATG
* *
75255627 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
75255647 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
75255667 TTCAT
1 TTCAT
75255672 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:75258232 original size:31 final size:31
Alignment explanation
Indices: 75258197--75258270 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
75258187 TTAACGGTAA
* *
75258197 AGTGACTAAAATTGACGACTTATCTAACGA-G
1 AGTGACTAAAATTGACAACTCATCTAAC-ATG
75258228 AGTGACTAAAATTGACAACTCATCTAACATG
1 AGTGACTAAAATTGACAACTCATCTAACATG
*
75258259 AATGACTAAAAT
1 AGTGACTAAAAT
75258271 AACAATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
30 1 0.03
31 38 0.97
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (31 bp):
AGTGACTAAAATTGACAACTCATCTAACATG
Found at i:75263068 original size:33 final size:32
Alignment explanation
Indices: 75263023--75263105 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 32
75263013 ATGCAACATG
**
75263023 ACATGC-TATAACAGACTAGTACGGTAGCAA-TA
1 ACATGCTTATAACAGA-TA-TACAATAGCAATTA
75263055 ACATGCTTATAACAAGTATATACAATAGCAATTA
1 ACATGCTTATAAC-AG-ATATACAATAGCAATTA
*
75263089 TCATGCTTATAACAGAT
1 ACATGCTTATAACAGAT
75263106 CATTACAGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
32 8 0.18
33 17 0.39
34 18 0.41
35 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (32 bp):
ACATGCTTATAACAGATATACAATAGCAATTA
Found at i:75267242 original size:40 final size:40
Alignment explanation
Indices: 75267168--75267245 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
75267158 TACAGTACCT
*
75267168 CTTGATGTGTAGGGTTGGATAGGTTGATTATATCCCCATA
1 CTTGATGTGTAGGGTTGGATAGGTCGATTATATCCCCATA
* * *
75267208 CTTGGTGTGTAGGGTTAGG-TGGGTCGATTTTATCCCCA
1 CTTGATGTGTAGGGTT-GGATAGGTCGATTATATCCCCA
75267246 CATGGTTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.37
Consensus pattern (40 bp):
CTTGATGTGTAGGGTTGGATAGGTCGATTATATCCCCATA
Found at i:75275160 original size:26 final size:27
Alignment explanation
Indices: 75275098--75275161 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
75275088 TTTATCGAGG
*
75275098 TTATTAGTTTACCGATAAATGAATATT
1 TTATTAATTTACCGATAAATGAATATT
* *
75275125 TTATTAATTTATCGATAAATTAATA-T
1 TTATTAATTTACCGATAAATGAATATT
75275151 TTATTAATTTA
1 TTATTAATTTA
75275162 GAGAATATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 12 0.35
27 22 0.65
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (27 bp):
TTATTAATTTACCGATAAATGAATATT
Found at i:75275309 original size:34 final size:33
Alignment explanation
Indices: 75275235--75275313 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 33
75275225 AATGAATCAA
* *
75275235 AGTTAATTGGTTCATGTAACAAAAATAATAAGTT
1 AGTTAATTGGTTCATGTAACAAAAAAAAAAAG-T
*
75275269 AATTAATTGGTTCATGTAACCAAAAAGAAAAAAG-
1 AGTTAATTGGTTCATGTAA-CAAAAA-AAAAAAGT
75275303 AGTTAA-TGGTT
1 AGTTAATTGGTT
75275314 TTAAAATCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
33 5 0.13
34 23 0.59
35 6 0.15
36 5 0.13
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.32
Consensus pattern (33 bp):
AGTTAATTGGTTCATGTAACAAAAAAAAAAAGT
Found at i:75283033 original size:26 final size:28
Alignment explanation
Indices: 75282974--75283033 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 28
75282964 CATATACTAT
*
75282974 TAATTATTATATGATCATAACAAAAAAA
1 TAATTATTATATGAACATAACAAAAAAA
75283002 -AA-TATTAT-T-AACATAA-AATAAAAA
1 TAATTATTATATGAACATAACAA-AAAAA
75283026 TAATTATT
1 TAATTATT
75283034 TTATTATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
23 2 0.07
24 11 0.39
25 3 0.11
26 10 0.36
27 2 0.07
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (28 bp):
TAATTATTATATGAACATAACAAAAAAA
Found at i:75283480 original size:21 final size:21
Alignment explanation
Indices: 75283455--75283496 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
75283445 GTAGTACTTA
75283455 TTTTTATTATTTACTATTACT
1 TTTTTATTATTTACTATTACT
75283476 TTTTTATTATTTACTATTACT
1 TTTTTATTATTTACTATTACT
75283497 ATAAATCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTATTATTTACTATTACT
Found at i:75294620 original size:15 final size:15
Alignment explanation
Indices: 75294600--75294652 Score: 88
Period size: 15 Copynumber: 3.5 Consensus size: 15
75294590 CGATGAATTT
75294600 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
75294615 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
75294630 ATTGAATTTATATTG
1 ATTGAATTTATATTG
75294645 ATTGAATT
1 ATTGAATT
75294653 ATAATATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:75295073 original size:21 final size:21
Alignment explanation
Indices: 75295038--75295133 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
75295028 AGGCACTTTA
75295038 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
75295061 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
*
75295082 TGTGTCGTATCAGGAACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
75295103 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
75295124 TGTGTCGTAT
1 TGTGTCGTAT
75295134 ACTGATCAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
21 56 0.86
23 9 0.14
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:75295108 original size:42 final size:42
Alignment explanation
Indices: 75295025--75295133 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
75295015 GGCTTTATCG
* * *
75295025 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGAACCTCGTGTGTCGT
*
75295069 ATCAGGCACCTCGTGTGTCGTATCAGGAACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGAACCTCGTGTGTCGT
* * * *
75295111 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
75295134 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 37 0.66
44 19 0.34
ACGTcount: A:0.17, C:0.22, G:0.26, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGAACCTCGTGTGTCGT
Found at i:75297198 original size:54 final size:54
Alignment explanation
Indices: 75297134--75297242 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
75297124 TCTTAAGTCT
75297134 CATGCCATAGTTTAAACAAAGAAATACAATTCTAGAATAATAGGAATTATAAAA
1 CATGCCATAGTTTAAACAAAGAAATACAATTCTAGAATAATAGGAATTATAAAA
75297188 CATGCCATAGTTTAAACAAAGAAATACAATTCTAGAATAATAGGAATTATAAAA
1 CATGCCATAGTTTAAACAAAGAAATACAATTCTAGAATAATAGGAATTATAAAA
75297242 C
1 C
75297243 TATGTCTAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (54 bp):
CATGCCATAGTTTAAACAAAGAAATACAATTCTAGAATAATAGGAATTATAAAA
Found at i:75299490 original size:18 final size:18
Alignment explanation
Indices: 75299467--75299503 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
75299457 GATTAGAGCA
75299467 TATTTTAGTCTTTAAATT
1 TATTTTAGTCTTTAAATT
75299485 TATTTTAGTCTTTAAATT
1 TATTTTAGTCTTTAAATT
75299503 T
1 T
75299504 TACTTCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTTTAGTCTTTAAATT
Found at i:75300239 original size:37 final size:37
Alignment explanation
Indices: 75300181--75300258 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
75300171 TAAACATTAA
*
75300181 AAAAATATTAAAATACTTAAATATAAAATTTAACAAAT
1 AAAAATATTAAAATACTTAAATAT-AAATTTAAAAAAT
*
75300219 AAAAATA-TAAAATTA-TTAAATATTAATTTAAAAAAT
1 AAAAATATTAAAA-TACTTAAATATAAATTTAAAAAAT
75300255 AAAA
1 AAAA
75300259 TTTTTGAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
36 15 0.41
37 13 0.35
38 9 0.24
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (37 bp):
AAAAATATTAAAATACTTAAATATAAATTTAAAAAAT
Found at i:75300272 original size:29 final size:29
Alignment explanation
Indices: 75300218--75300273 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
75300208 ATTTAACAAA
*
75300218 TAAAAATATAAAATTATTAAATATTAATT
1 TAAAAATATAAAATTATTAAAAATTAATT
*
75300247 TAAAAA-ATAAAATTTTTGAAAAATTAA
1 TAAAAATATAAAATTATT-AAAAATTAA
75300274 AAATAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (29 bp):
TAAAAATATAAAATTATTAAAAATTAATT
Found at i:75301032 original size:21 final size:18
Alignment explanation
Indices: 75301002--75301043 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
75300992 TTTTATAAAA
75301002 AAAAATATATAAAGGTAGAT
1 AAAAATATATAAA-G-AGAT
75301022 AAAAATGATATAAAGAGAT
1 AAAAAT-ATATAAAGAGAT
75301041 AAA
1 AAA
75301044 GTTAGAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 7 0.33
21 7 0.33
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (18 bp):
AAAAATATATAAAGAGAT
Found at i:75303854 original size:15 final size:15
Alignment explanation
Indices: 75303823--75303869 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 15
75303813 ATTACTTTTA
*
75303823 AAAATTAAAAATCATT
1 AAAATT-AAAATTATT
75303839 AAAATTAAAATTATT
1 AAAATTAAAATTATT
75303854 AAAAGTATAAAATTAT
1 AAAA-T-TAAAATTAT
75303870 AATTTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 12 0.43
16 7 0.25
17 9 0.32
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (15 bp):
AAAATTAAAATTATT
Found at i:75315119 original size:45 final size:45
Alignment explanation
Indices: 75315036--75315121 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
75315026 TTATATGCCT
* * *
75315036 AAAATGAGTAAGACCATAGTTGAAAGATGTTATGGCATCATGATA
1 AAAATGAGTAAGACCATAGCTGAAAAATGCTATGGCATCATGATA
*
75315081 AAAATGAGTAAGATCATAGCTGAAAAATGCTA-GAGCATCAT
1 AAAATGAGTAAGACCATAGCTGAAAAATGCTATG-GCATCAT
75315122 ATGAAAGCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.24
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAGCTGAAAAATGCTATGGCATCATGATA
Found at i:75318079 original size:39 final size:39
Alignment explanation
Indices: 75318036--75318171 Score: 209
Period size: 39 Copynumber: 3.5 Consensus size: 39
75318026 TCACTTATAT
* * *
75318036 GCATATATCACATTACACATATAATCACATAAAATTTAA
1 GCATATATCACAATACTCATATAATCACATAAAATTCAA
* *
75318075 GCATATATCACAATACTCATGTAATCACATAACATTCAA
1 GCATATATCACAATACTCATATAATCACATAAAATTCAA
* *
75318114 GCATATATCACAATACTTATATAATCACATAATATTCAA
1 GCATATATCACAATACTCATATAATCACATAAAATTCAA
75318153 GCATATATCACAATACTCA
1 GCATATATCACAATACTCA
75318172 AAGACATGTT
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.30
Consensus pattern (39 bp):
GCATATATCACAATACTCATATAATCACATAAAATTCAA
Found at i:75320955 original size:26 final size:26
Alignment explanation
Indices: 75320926--75321033 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
75320916 TGGTACAAAT
75320926 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
75320952 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
75320978 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75321004 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75321030 TGAT
1 TGAT
75321034 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75322696 original size:27 final size:27
Alignment explanation
Indices: 75322656--75322796 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
75322646 AGGAAACATC
*
75322656 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
75322683 CTGGTGGCTCTGCCA-AATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
75322710 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* * *
75322737 CTGGTGGGTCTGCTAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
75322764 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
75322791 CTGGTG
1 CTGGTG
75322797 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
26 11 0.11
27 83 0.86
28 3 0.03
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:75322738 original size:54 final size:53
Alignment explanation
Indices: 75322656--75322796 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
75322646 AGGAAACATC
75322656 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCAAATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCAAATATATCTGTT
* * *
75322710 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGGTCTGCTACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCAAATATATCTGTT
* *
75322764 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
75322797 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCAAATATATCTGTT
Found at i:75322807 original size:27 final size:26
Alignment explanation
Indices: 75322656--75322814 Score: 131
Period size: 27 Copynumber: 5.9 Consensus size: 26
75322646 AGGAAACATC
* * *
75322656 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
75322683 CTGGTGGCTCTGCCAAATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * *
75322710 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGACTCTGCCAC-AATATCTGTT
** *
75322737 CTGGTGGGTCTGCTACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
75322764 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
75322791 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
75322815 GCAGCCTTGC
Statistics
Matches: 111, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
26 10 0.09
27 99 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:75327651 original size:26 final size:26
Alignment explanation
Indices: 75327622--75327729 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
75327612 TGGTACAAAT
75327622 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75327648 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75327674 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
75327700 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75327726 TGAT
1 TGAT
75327730 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75329459 original size:32 final size:27
Alignment explanation
Indices: 75329323--75329463 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
75329313 AGGAAGCGTC
*
75329323 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
* * *
75329350 CTAGTGGCTCTGCCACATATATATGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
75329377 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
75329404 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
75329431 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
75329458 CTGGTG
1 CTGGTG
75329464 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 9 0.09
27 87 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:75329460 original size:54 final size:53
Alignment explanation
Indices: 75329323--75329463 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
75329313 AGGAAGCGTC
*
75329323 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATATGTT
1 CTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTCTGCCACATATATATGTT
* *
75329377 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-AATATCTGATCTGGTGGCTCTGCCACATATATATGTT
*
75329431 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATATCTG-ATCTGGTG
75329464 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
53 7 0.09
54 72 0.90
55 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATATCTGATCTGGTGGCTCTGCCACATATATATGTT
Found at i:75329474 original size:27 final size:27
Alignment explanation
Indices: 75329323--75329481 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
75329313 AGGAAGCGTC
*
75329323 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
75329350 CTAGTGGCTCTGCCACATATATATGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
75329377 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
75329404 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
75329431 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
75329458 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
75329482 GCAGCCTCAC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:75337741 original size:44 final size:47
Alignment explanation
Indices: 75337634--75337899 Score: 136
Period size: 47 Copynumber: 5.7 Consensus size: 47
75337624 GGGTTATATT
* * * * * *
75337634 GCCGATGCCATCTCCCAGATATGGTCTTACACTGGCTCTCATATACGCG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATC-TA-ACTCGAA
* **
75337684 GCTGATGCATGTCCCAGACATGTCTTACACTAG-TA-C-AACTCTTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCTAACTCGAA
* * * * ***
75337728 GCCGATGCGTGTCCCAGACACGTCTTCCACTGGCTATCTTTGTCGAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCTAACTCGAA
* * ** *
75337775 GCCGATGCATGTCCCAGACATGTCTTACAGTGGC-ACTCGTTTCT-G-T
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTA-TC-TAACTCGAA
* * **
75337821 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATACT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCTA-ACTCGAA
* * *
75337869 GCTGAAGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
75337900 GGCGCACAAA
Statistics
Matches: 173, Mismatches: 32, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
43 3 0.02
44 29 0.17
45 2 0.01
46 20 0.12
47 67 0.39
48 34 0.20
49 12 0.07
50 6 0.03
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCTAACTCGAA
Found at i:75337790 original size:47 final size:47
Alignment explanation
Indices: 75337687--75337902 Score: 153
Period size: 47 Copynumber: 4.7 Consensus size: 47
75337677 TACGCGTGCT
* * * *
75337687 GATGCATGTCCCAGACATGTCTTACACTAG-TACAAC---TCTTAGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTAC-TCGTTTCTGAGCC
* * *
75337731 GATGCGTGTCCCAGACACGTCTTCCACTGGCTA-TC-TTTGTCGAAGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTACTCGTTTCT-G-AGCC
* * *
75337778 GATGCATGTCCCAGACATGTCTTACAGTGGC-ACTCGTTTCTGTGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTACTCGTTTCTGAGCC
* * * * *
75337824 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTC-ATACTGTGGCT
1 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTACTCGTTTCTG-AGCC
* * *
75337872 GAAGCATGTCCTAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACACGTCTTACACTGGC
75337903 GCACAAATCA
Statistics
Matches: 139, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 26 0.19
45 4 0.03
46 21 0.15
47 63 0.45
48 24 0.17
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTACTCGTTTCTGAGCC
Found at i:75337890 original size:94 final size:91
Alignment explanation
Indices: 75337632--75337902 Score: 273
Period size: 94 Copynumber: 2.9 Consensus size: 91
75337622 ATGGGTTATA
* * * *
75337632 TTGCCGATGCCATCTCCCAGATATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTC
1 TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT--GTGAGCTGATGCATGTC
* *
75337697 CCAGACATGTCTTACACTAGTACAACTC
64 CCAGACATGTCTTACACTGGCACAACTC
* * * * * *
75337725 TTAGCCGATG-CGTGTCCCAGACA-CGTCTTCCACTGGCTATC-TTTGTCGAAGCCGATGCATGT
1 TT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGT-G-AGCTGATGCATGT
* *
75337787 CCCAGACATGTCTTACAGTGGCAC-TCGTTTC
63 CCCAGACATGTCTTACACTGGCACAAC---TC
*
75337818 TGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACTGTG-GCTGAAGCATGTC
1 T-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TGTGAGCTGATGCATGTC
*
75337882 CTAGACATGTCTTACACTGGC
64 CCAGACATGTCTTACACTGGC
75337903 GCACAAATCA
Statistics
Matches: 144, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
89 1 0.01
90 2 0.01
91 34 0.24
92 15 0.10
93 22 0.15
94 50 0.35
95 15 0.10
96 2 0.01
97 3 0.02
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.29
Consensus pattern (91 bp):
TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGAGCTGATGCATGTCCC
AGACATGTCTTACACTGGCACAACTC
Found at i:75341641 original size:42 final size:43
Alignment explanation
Indices: 75341562--75341712 Score: 146
Period size: 42 Copynumber: 3.5 Consensus size: 43
75341552 TCCTGGACGT
* * * *
75341562 GGTCTTACATGAAATTCAG-TATCGATGCCTCTGTCCCAAATAG
1 GGTCTTACACGAAATTCAGATA-CGATGCCTATGTCCCAGATAC
* * *
75341605 GGTCTTACACGAAA-TCAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATTCAGATACGATGCCTATGTCCCAGATAC
* * *
75341647 GGTCTTACACATAAATCTCAAAT-CGAGGCCTATGTCCCAGATAC
1 GGTCTTACAC-GAAAT-TCAGATACGATGCCTATGTCCCAGATAC
*
75341691 GGTCTTACACGATATCTCAGAT
1 GGTCTTACACGAAAT-TCAGAT
75341713 CGAGGTCAAC
Statistics
Matches: 89, Mismatches: 15, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
42 30 0.34
43 27 0.30
44 27 0.30
45 5 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGAAATTCAGATACGATGCCTATGTCCCAGATAC
Found at i:75348592 original size:42 final size:43
Alignment explanation
Indices: 75348495--75348620 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 43
75348485 GTACAATGTT
* * *
75348495 GATGTCCCAAACGTGGTCTTACATGAAATTCAGTATCGATGCC
1 GATGTCCCAGACATGGTCTTACACGAAATTCAGTATCGATGCC
** * * *
75348538 TCTATCCTAGACAAGGTCTTACACGAAA-TCAG-ATACGATGCC
1 GATGTCCCAGACATGGTCTTACACGAAATTCAGTAT-CGATGCC
*
75348580 GATGTCCCAGACATGGTCTTACACGATATCTCAG-ATCGATG
1 GATGTCCCAGACATGGTCTTACACGAAAT-TCAGTATCGATG
75348621 TCAACGTTCC
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.03
42 33 0.50
43 25 0.38
44 6 0.09
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
GATGTCCCAGACATGGTCTTACACGAAATTCAGTATCGATGCC
Found at i:75351647 original size:43 final size:43
Alignment explanation
Indices: 75351510--75351673 Score: 133
Period size: 43 Copynumber: 3.8 Consensus size: 43
75351500 ACATAGGATT
* * *
75351510 TCGATATGTGATTTCGTGTAAGACCAC-ATCTGGGAC-GTTGGCA
1 TCGATATTTGATTTCATGTAAGACC-CTGTCTGGGACAG-TGGCA
* * * *
75351553 TCGAT-TTGAGATTTACATGTAAGACCGTGTCTGAGACA-TCAGCA
1 TCGATATT-TGATTT-CATGTAAGACCCTGTCTGGGACAGT-GGCA
* * *
75351597 TCG-TATTTGATTTCGTGTAAGACCCTGTTTGGGACAGTGGTA
1 TCGATATTTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCA
*
75351639 TCGATATTTGATTACATGTAAGACCAC-GTCTGGGA
1 TCGATATTTGATTTCATGTAAGACC-CTGTCTGGGA
75351674 TGTTGGCATT
Statistics
Matches: 95, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
42 25 0.26
43 44 0.46
44 26 0.27
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCA
Found at i:75359242 original size:48 final size:47
Alignment explanation
Indices: 75359183--75359307 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 47
75359173 ACCATATTAT
* *
75359183 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGGGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCATCGAGAC
* * * *
75359231 GAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCATCGAGAC
75359277 GTA-AGCCAGTGTAAGACATGTCTGGGACATG
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATG
75359308 TATTGGCTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 38 0.56
47 15 0.22
48 15 0.22
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCATCGAGAC
Found at i:75359322 original size:46 final size:45
Alignment explanation
Indices: 75359186--75359357 Score: 145
Period size: 46 Copynumber: 3.7 Consensus size: 45
75359176 ATATTATGAG
* *
75359186 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ATTGGGACG-A
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGA-GTA
* *
75359233 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGA-GTA
* *
75359280 AGCCAGTGTAAGACATGTCTGGGACATGTATTGGCTATGAGA-TA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAGTA
*** *
75359324 TTTCAGTGTAAGTCCATGTCTGGGACATGGCATC
1 AGCCAGTGTAAG-ACATGTCTGGGACAT-GCATC
75359358 AACACGGATA
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 48 0.47
47 16 0.16
48 12 0.12
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAGTA
Found at i:75366978 original size:48 final size:47
Alignment explanation
Indices: 75366875--75367184 Score: 240
Period size: 46 Copynumber: 6.6 Consensus size: 47
75366865 TTATTTGTGT
*
75366875 GCTAGTGTAAGA-CATGTCTGGGACATGTATCGGAAACATT--ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGG--ACATTAGATGAGA
* *
75366921 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GATATTGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGACATT-AGATGAGA
* *
75366969 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGG-CCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGACAT-TAGATG-AGA
** *
75367015 GCCT-GTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGTG-
1 G-CTAGTGTAAGACCATGTCTGGGACATGCATCGGAC-ATTAGATGAGA
* * *
75367060 TC-AGTGTAAGACCATGTCTGGGACATAGCATC-AACACGTATAGA--AGT
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGACA--T-TAGATGAGA
*
75367107 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATG-TGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGG-AC-ATTA-GATGAGA
75367157 GCTAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGACCATGTCTGGGACATG
75367185 GCGTCAGCCT
Statistics
Matches: 216, Mismatches: 20, Indels: 53
0.75 0.07 0.18
Matches are distributed among these distances:
44 9 0.04
45 19 0.09
46 67 0.31
47 33 0.15
48 55 0.25
49 2 0.01
50 29 0.13
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGACATTAGATGAGA
Found at i:75367232 original size:49 final size:49
Alignment explanation
Indices: 75366923--75367286 Score: 280
Period size: 49 Copynumber: 7.6 Consensus size: 49
75366913 TTATGAGAGC
* ** *
75366923 CAGTGTAAGACCATGTCTGGGACATGGCATC-G--A-TATTGAGATGAGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATTTCGAT-AG-T
* * ** *
75366970 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-G-TAAGC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATTTCGAT-AGT
* * * **
75367017 CTGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGAT-G-T-GT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATTTCGATAGT
* * * *
75367061 CAGTGTAAGACCATGTCTGGGACATAGCATCA-ACACG-TATAGA-AGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATTTCGATA--GT
* *
75367109 CAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACGAATATGT-GAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACG-AT-T-TCGATAGT
* *
75367158 CTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATTTCGATAGT
* *
75367208 CAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATTTCGATAGT
*
75367257 CAGTGTAAGACCATGTCTGAGACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
75367287 TGGCATTATA
Statistics
Matches: 270, Mismatches: 25, Indels: 42
0.80 0.07 0.12
Matches are distributed among these distances:
44 12 0.04
45 18 0.07
46 48 0.18
47 17 0.06
48 49 0.18
49 83 0.31
50 35 0.13
51 6 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATTTCGATAGT
Found at i:75368288 original size:28 final size:28
Alignment explanation
Indices: 75368248--75368312 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
75368238 ACGGGTTAAA
75368248 ACACGGGCATGTCATGGCCGTGTGAGAG
1 ACACGGGCATGTCATGGCCGTGTGAGAG
75368276 ACACGGGCATGTCATGGCCGTGTGAGAG
1 ACACGGGCATGTCATGGCCGTGTGAGAG
75368304 ACACGGGCA
1 ACACGGGCA
75368313 ATGGACACGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.15
Consensus pattern (28 bp):
ACACGGGCATGTCATGGCCGTGTGAGAG
Found at i:75369799 original size:108 final size:110
Alignment explanation
Indices: 75369600--75369800 Score: 275
Period size: 108 Copynumber: 1.8 Consensus size: 110
75369590 TTTAAGGATA
* * *
75369600 CCATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCCAAGGCAAGGATGCCATGTAATA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCCAAGGCAAGGATACCATGTAAGA
* *
75369665 CCATGTCAAGACGTGGCATTGATAAGTTACTATAAGGAAAACGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAACGTC
* *
75369710 CCATGTAAGACCATGCCAAGGTATGG-AATTGG--AGAG-TTCATAAGGCAAGGATACCATGTAA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAG-GTTTC-CAAGGCAAGGATACCATGTAA
* *
75369771 GACCATGTCGAGACATGGCAATGGTAAGTT
64 GACCATGTCAAGACATGGCAATGATAAGTT
75369801 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
107 5 0.06
108 45 0.56
109 6 0.08
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCCAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAACGTC
Found at i:75370058 original size:16 final size:16
Alignment explanation
Indices: 75370037--75370067 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75370027 ATAAATTTGA
75370037 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
75370053 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
75370068 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:75384076 original size:40 final size:40
Alignment explanation
Indices: 75384014--75384271 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
75384004 AAACCAAGTA
* * *
75384014 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
** *
75384053 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75384093 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75384133 CCTTCGGGACTTAGCTCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75384173 CCTTCGAGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCG-GGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
75384213 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
75384253 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75384272 TTATCATCCG
Statistics
Matches: 200, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.08
40 182 0.91
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Done.