Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 23 of 332
Found at i:6633291 original size:9 final size:9
Alignment explanation
Indices: 6633279--6633313 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
6633269 TCCTTTTTTC
6633279 TTTCTTTGT
1 TTTCTTTGT
6633288 TTTCTTTGT
1 TTTCTTTGT
*
6633297 TTTCTTTCTT
1 TTTCTTT-GT
6633307 TTTCTTT
1 TTTCTTT
6633314 CTGTTCTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (9 bp):
TTTCTTTGT
Found at i:6637262 original size:17 final size:17
Alignment explanation
Indices: 6637240--6637283 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
6637230 AATCCATTAC
6637240 TTTCAAATTATGGGTCA
1 TTTCAAATTATGGGTCA
6637257 TTTCAAATTATGGGTCA
1 TTTCAAATTATGGGTCA
*
6637274 CTTCAAATTA
1 TTTCAAATTA
6637284 AGCTTCTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (17 bp):
TTTCAAATTATGGGTCA
Found at i:6638211 original size:22 final size:22
Alignment explanation
Indices: 6638173--6638220 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
6638163 TGTAAATTTT
6638173 TAAATTCAAAAAGTAAAA-AGA
1 TAAATTCAAAAAGTAAAATAGA
*
6638194 CTAAATTTCAAATA-TAAAATAGA
1 -TAAA-TTCAAAAAGTAAAATAGA
6638217 TAAA
1 TAAA
6638221 AGAATTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (22 bp):
TAAATTCAAAAAGTAAAATAGA
Found at i:6639299 original size:55 final size:56
Alignment explanation
Indices: 6639196--6639318 Score: 212
Period size: 56 Copynumber: 2.2 Consensus size: 56
6639186 ATGGAAAAAA
6639196 ATTAGAAGGCCAACACCTAAAAAAATTTGAATTTTTTTTTGTACTTGGTGCAGGCC
1 ATTAGAAGGCCAACACCTAAAAAAATTTGAATTTTTTTTTGTACTTGGTGCAGGCC
* * *
6639252 ATTAGAAAGCCAATACCTAAAAAAATTTGAATTTTTTTTTGTA-TTGGTGCCGGCC
1 ATTAGAAGGCCAACACCTAAAAAAATTTGAATTTTTTTTTGTACTTGGTGCAGGCC
6639307 ATTAGAAGGCCA
1 ATTAGAAGGCCA
6639319 GAACCAAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
55 22 0.35
56 41 0.65
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (56 bp):
ATTAGAAGGCCAACACCTAAAAAAATTTGAATTTTTTTTTGTACTTGGTGCAGGCC
Found at i:6643826 original size:14 final size:14
Alignment explanation
Indices: 6643809--6643847 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
6643799 TTTCAATTTT
6643809 TTTTAAATTTAATA
1 TTTTAAATTTAATA
* *
6643823 TTTTAAATTAAATC
1 TTTTAAATTTAATA
6643837 TTTTCAAATTT
1 TTTT-AAATTT
6643848 CAAACATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTAAATTTAATA
Found at i:6657596 original size:35 final size:35
Alignment explanation
Indices: 6657502--6657903 Score: 486
Period size: 35 Copynumber: 11.5 Consensus size: 35
6657492 GGCAAAGTGA
* *
6657502 GAAATGTAGGTATGGTA-TAACCATATCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* ** ** * * *
6657536 GAAATGTAAGTATGGCGTCGTCCATACTGAGCTAT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* * *
6657571 GATACGTAGGTATGGTATTAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* *
6657606 GAAACGTAGGTATGGTATTAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* * *
6657641 GAAAGGTAGGTATGGTATTAACCATACCGAGATGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* *
6657676 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* * **
6657711 GAAATATAGGTATGGTATCATCCATATTGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
*
6657746 GAAATGTAGGTATGGTATCATCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* *
6657781 GAAATGTAGGTATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* **
6657816 GAAATGTAGGTATGGTATTATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
* *
6657851 GAAATGTAGGT-TGGCATT-TCCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATTAT-CCATACCGAGTTGT
6657885 GAAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
6657904 TCAATGAGAA
Statistics
Matches: 322, Mismatches: 43, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
33 1 0.00
34 43 0.13
35 278 0.86
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.31
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTATCCATACCGAGTTGT
Found at i:6667159 original size:24 final size:24
Alignment explanation
Indices: 6667130--6667176 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
6667120 TTTTCAGTAT
6667130 TAAGAAAATCATTCATTAAAAATA
1 TAAGAAAATCATTCATTAAAAATA
6667154 TAAGAAAATCATTCATTAAAAAT
1 TAAGAAAATCATTCATTAAAAAT
6667177 CATATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (24 bp):
TAAGAAAATCATTCATTAAAAATA
Found at i:6671367 original size:17 final size:17
Alignment explanation
Indices: 6671345--6671382 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
6671335 AGGCCGTGTA
* *
6671345 GGCCACACGGGCATGTG
1 GGCCACACAGGCATCTG
6671362 GGCCACACAGGCATCTG
1 GGCCACACAGGCATCTG
6671379 GGCC
1 GGCC
6671383 CAAAATTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.34, G:0.37, T:0.11
Consensus pattern (17 bp):
GGCCACACAGGCATCTG
Found at i:6671843 original size:6 final size:6
Alignment explanation
Indices: 6671832--6671870 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
6671822 AATCTAAGTT
* *
6671832 TGAATC TGAATC TGAATT TGAATC TGAATC TGTATC TGA
1 TGAATC TGAATC TGAATC TGAATC TGAATC TGAATC TGA
6671871 CTGTGTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (6 bp):
TGAATC
Found at i:6672074 original size:19 final size:21
Alignment explanation
Indices: 6672032--6672074 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
6672022 TCGAGAGCTA
*
6672032 TTTTTACTTAGTAAATTACTG
1 TTTTTACTTAGTAAATTACAG
*
6672053 TTTTTACTTA-T-AATTTCAG
1 TTTTTACTTAGTAAATTACAG
6672072 TTT
1 TTT
6672075 GAGAGTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 1 0.05
21 10 0.50
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.58
Consensus pattern (21 bp):
TTTTTACTTAGTAAATTACAG
Found at i:6674714 original size:46 final size:46
Alignment explanation
Indices: 6674533--6674714 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
6674523 TTTGACGTGA
* * * * *
6674533 TGCCATAGTGTCTTTCAACTATGGTCTTACTCAGTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
6674579 TTCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
6674625 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
6674671 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
6674715 AGAGCACACT
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 117 0.97
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:6683653 original size:43 final size:43
Alignment explanation
Indices: 6683590--6683707 Score: 175
Period size: 43 Copynumber: 2.7 Consensus size: 43
6683580 TTCAATGAAC
* *
6683590 TCGCACACTTAGTGCTAATTAATTAATCGAAGCTATAATTGCA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGCA
* *
6683633 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGCA
6683676 TCGCACACTTAGTGCC-ATTACATTAAACCGAA
1 TCGCACACTTAGTGCCAATTA-ATT-AACCGAA
6683708 CTCATATCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 4 0.06
43 58 0.85
44 6 0.09
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGCA
Found at i:6687376 original size:16 final size:16
Alignment explanation
Indices: 6687355--6687385 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6687345 CTATGCATAC
*
6687355 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
6687371 AAAATACAAAAGACA
1 AAAATACAAAAGACA
6687386 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:6689935 original size:12 final size:12
Alignment explanation
Indices: 6689918--6689942 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6689908 CACAACATGC
6689918 ATGGTATTAAAA
1 ATGGTATTAAAA
6689930 ATGGTATTAAAA
1 ATGGTATTAAAA
6689942 A
1 A
6689943 AACATAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:6691486 original size:44 final size:44
Alignment explanation
Indices: 6691426--6691924 Score: 292
Period size: 44 Copynumber: 11.6 Consensus size: 44
6691416 AATTTTTAGC
* * *
6691426 CTGTTACCCTATTGCTTAGGGGTTTAAGGCCCATCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * * * * ** *
6691470 ATATTTCCCTACTGCTTAGGGGGTTAAGAT-CTTGCAAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCAT-CACCTTCGA-T
* * * *
6691514 CTGTTACCCTACTGCTTAGGGGTTTACGGCCCATCCCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * ** ** * * *
6691558 CTGTTTCCCTACTGCTTAGAGAG-TTAAGATCTGT-AAATCCAAC
1 CTGTTTCCCTACTGCTTAG-GGGTTTAAGGTCCATCACCTTCGAT
* * *
6691601 CTGTTACCCTACTACTTAGGGGTTTAAGGTCCATCACCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * * * ** * *
6691645 TTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT-AAATTCCAC
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * *
6691688 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * ** ** * *
6691732 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCCAC
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * * * *
6691775 CTGTTACCCTA---C-TA----CTT-AGGTCCATCGCTTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * ** ** * *
6691810 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCCAC
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
* * *
6691853 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
*
6691897 CTGTTTCCCTACTGCTTAGGGGGTTAAG
1 CTGTTTCCCTACTGCTTAGGGGTTTAAG
6691925 ATCTATACAT
Statistics
Matches: 320, Mismatches: 116, Indels: 38
0.68 0.24 0.08
Matches are distributed among these distances:
34 5 0.02
35 15 0.05
38 1 0.00
39 4 0.01
40 1 0.00
42 2 0.01
43 111 0.35
44 176 0.55
45 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGTTTAAGGTCCATCACCTTCGAT
Found at i:6691650 original size:87 final size:87
Alignment explanation
Indices: 6691425--6691928 Score: 733
Period size: 87 Copynumber: 5.9 Consensus size: 87
6691415 TAATTTTTAG
* * * * * *
6691425 CCTGTTACCCTATTGCTTAGGGGTTTAAGGCCCATCACCTTCGATATATTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
*
6691490 GGGTTAAGATCTTGCAAATT-CA
66 GGGTTAAGATC-TGTAAATTCCA
* * * *
6691512 GCCTGTTACCCTACTGCTTAGGGGTTTACGGCCCATCCCCTTCGATCTGTTTCCCTACTGCTTAG
1 -CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAG
* *
6691577 AGAGTTAAGATCTGTAAA-TCCAA
65 GGGGTTAAGATCTGTAAATTCC-A
* * *
6691600 CCTGTTACCCTACTACTTAGGGGTTTAAGGTCCATCACCTTTGATTTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
*
6691665 GGGTTAAGATCTATAAATTCCA
66 GGGTTAAGATCTGTAAATTCCA
6691687 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
6691752 GGGTTAAGATCTGTAAATTCCA
66 GGGTTAAGATCTGTAAATTCCA
* *
6691774 CCTGTTACCCTA---C-TA----CTT-AGGTCCATCGCTTTTGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
6691830 GGGTTAAGATCTGTAAATTCCA
66 GGGTTAAGATCTGTAAATTCCA
6691852 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
6691917 GGGTTAAGATCT
66 GGGTTAAGATCT
6691929 ATACATTTAG
Statistics
Matches: 379, Mismatches: 25, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
78 71 0.19
79 2 0.01
81 1 0.00
82 2 0.01
83 2 0.01
84 1 0.00
86 3 0.01
87 224 0.59
88 73 0.19
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (87 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTGTAAATTCCA
Found at i:6691887 original size:165 final size:167
Alignment explanation
Indices: 6691449--6691928 Score: 707
Period size: 165 Copynumber: 2.8 Consensus size: 167
6691439 GCTTAGGGGT
* * * * *
6691449 TTAAGGCCCATCACCTTCGATATATTTCCCTACTGCTTAGGGGGTTAAGATCTTGCAAATT-CAG
1 TTAAGGTCCATCACCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTCCA-
* * * * *
6691513 CCTGTTACCCTACTGCTTAGGGGTTTACGGCCCATCCCCTTCGATCTGTTTCCCTACTGCTTAGA
64 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGG
*
6691578 GAGTTAAGATCTGTAAATCCAACCTGTTACCCTACTACTTAGGGG
129 GGGTTAAGATCTGTAAATCCAACCTGTTACCCTACTAC------G
* *
6691623 TTTAAGGTCCATCACCTTTGATTTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTCCAC
1 -TTAAGGTCCATCACCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCAC
6691688 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGG
65 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGG
6691753 GGTTAAGATCTGTAAATTCC-ACCTGTTACCCTACTAC-
130 GGTTAAGATCTGTAAA-TCCAACCTGTTACCCTACTACG
* *
6691790 TT-AGGTCCATCGCTTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACC
1 TTAAGGTCCATCACCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACC
6691854 TGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGGG
66 TGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGGG
6691919 GTTAAGATCT
131 GTTAAGATCT
6691929 ATACATTTAG
Statistics
Matches: 287, Mismatches: 16, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
165 133 0.46
166 2 0.01
174 99 0.34
175 53 0.18
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (167 bp):
TTAAGGTCCATCACCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCCACC
TGTTACCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTTGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAATCCAACCTGTTACCCTACTACG
Found at i:6700171 original size:9 final size:9
Alignment explanation
Indices: 6700153--6700181 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
6700143 TGCAATGCCG
6700153 ATGC-ATGA
1 ATGCAATGA
6700161 ATGCAATGA
1 ATGCAATGA
6700170 ATGCAATGA
1 ATGCAATGA
6700179 ATG
1 ATG
6700182 TAAAAAAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (9 bp):
ATGCAATGA
Found at i:6704331 original size:12 final size:12
Alignment explanation
Indices: 6704314--6704338 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6704304 CACAACATGC
6704314 ATGGTATTAAAA
1 ATGGTATTAAAA
6704326 ATGGTATTAAAA
1 ATGGTATTAAAA
6704338 A
1 A
6704339 ACATAATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
ATGGTATTAAAA
Found at i:6704508 original size:3 final size:3
Alignment explanation
Indices: 6704500--6704526 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6704490 ACACTAGTAT
6704500 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
6704527 TAGAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6705617 original size:22 final size:22
Alignment explanation
Indices: 6705575--6705619 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6705565 TTAACAATTA
*
6705575 TAAAAATAAAATAAATCAAAAT
1 TAAAAATAAAATAAATAAAAAT
*
6705597 TAAAATTAAAA-AATATAAAAAT
1 TAAAAATAAAATAA-ATAAAAAT
6705619 T
1 T
6705620 TATAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAAAATAAAATAAATAAAAAT
Found at i:6708533 original size:18 final size:16
Alignment explanation
Indices: 6708497--6708536 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
6708487 TAGTACATGA
6708497 AAATTAAAAAATAATT
1 AAATTAAAAAATAATT
*
6708513 AAATTAAATAATATTATT
1 AAATTAAA-AA-ATAATT
6708531 AAATTA
1 AAATTA
6708537 GGGAGTTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 2 0.10
18 11 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTAAAAAATAATT
Found at i:6711838 original size:15 final size:16
Alignment explanation
Indices: 6711801--6711840 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
6711791 TACTAATAAC
6711801 AATAAT-AATAGTAAA
1 AATAATAAATAGTAAA
6711816 AATAATAAATA-TAAA
1 AATAATAAATAGTAAA
6711831 TAAT-ATAAAT
1 -AATAATAAAT
6711841 TTTGAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (16 bp):
AATAATAAATAGTAAA
Found at i:6711997 original size:3 final size:3
Alignment explanation
Indices: 6711989--6712133 Score: 91
Period size: 3 Copynumber: 47.3 Consensus size: 3
6711979 GTTTAATAGT
* * * *
6711989 ATA ATA ATA ATA ATA ATT TTG GTA ATA ATA ATA ATA ATA ATA A-A ATGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* ** * *
6712037 AGA ATA ACG ATA ATA CATTA ATA ATA ATA ACA ACA ATA AT- ATAA ATA
1 ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
** *
6712084 ATA A-A ATA ATA ATA ATA GCA ATA ATA GATTA ATTA ATA AT- GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA A-TA ATA ATA ATA ATA
6712130 ATA A
1 ATA A
6712134 GTAAATAAAC
Statistics
Matches: 112, Mismatches: 20, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
2 7 0.06
3 89 0.79
4 12 0.11
5 4 0.04
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6712085 original size:35 final size:34
Alignment explanation
Indices: 6712011--6712133 Score: 99
Period size: 35 Copynumber: 3.5 Consensus size: 34
6712001 ATAATTTTGG
* *
6712011 TAATAA-TAATAATAATAATAA-AATGAAGAATAACGA
1 TAATAATTAATAATAATAACAACAAT--AGATTAA--A
6712047 TAATACATTAATAATAATAACAACAATA-ATATAAA
1 TAATA-ATTAATAATAATAACAACAATAGAT-TAAA
* * * *
6712082 TAATAAAATAATAATAATAGCAATAATAGATTAAT
1 TAAT-AATTAATAATAATAACAACAATAGATTAAA
6712117 TAATAATGTAATAATAA
1 TAATAAT-TAATAATAA
6712134 GTAAATAAAC
Statistics
Matches: 73, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
34 2 0.03
35 40 0.55
36 9 0.12
37 5 0.07
38 14 0.19
39 3 0.04
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (34 bp):
TAATAATTAATAATAATAACAACAATAGATTAAA
Found at i:6712091 original size:14 final size:14
Alignment explanation
Indices: 6712011--6712100 Score: 62
Period size: 14 Copynumber: 6.4 Consensus size: 14
6712001 ATAATTTTGG
6712011 TAATAATAATAATAA
1 TAATAATAATAA-AA
6712026 TAATAA-AATGAAGAA
1 TAATAATAAT-AA-AA
** * *
6712041 TAACGATAATACAT
1 TAATAATAATAAAA
6712055 TAATAATAATAACAA
1 TAATAATAATAA-AA
*
6712070 CAATAAT-AT-AAA
1 TAATAATAATAAAA
6712082 TAATAA-AATAATAA
1 TAATAATAATAA-AA
6712096 TAATA
1 TAATA
6712101 GCAATAATAG
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
12 9 0.16
13 2 0.03
14 22 0.38
15 22 0.38
16 3 0.05
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.28
Consensus pattern (14 bp):
TAATAATAATAAAA
Found at i:6714037 original size:44 final size:43
Alignment explanation
Indices: 6713985--6714206 Score: 151
Period size: 44 Copynumber: 5.0 Consensus size: 43
6713975 GAGAAAAGAT
6713985 TTGTAGCTTCGATCTACTCCGATGGAACTTCAAGGAGATAAAAA
1 TTGTAGCTTCGATCTACTCC-ATGGAACTTCAAGGAGATAAAAA
* *** ** * * *
6714029 TTGTAGCTTCGAGCCGTTCCAATGCCATTTCAAGGAGA-AGAGAT
1 TTGTAGCTTCGATCTACTCC-ATGGAACTTCAAGGAGATA-AAAA
* **
6714073 TTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGAGATACGAA
1 TTGTAGCTTCGATCTACTCCA-TGGAACTTCAAGGAGATAAAAA
* * ** ** * * *
6714117 TTGTGGCTTCGAACCGCTCCAATGTCATTTCAGGGAGA-AGAAAT
1 TTGTAGCTTCGATCTACTCC-ATGGAACTTCAAGGAGATA-AAAA
* * *
6714161 TTGTAGTTTCGATCTACTCCACTGGAACTTTAAAGAGATAAAAA
1 TTGTAGCTTCGATCTACTCCA-TGGAACTTCAAGGAGATAAAAA
6714205 TT
1 TT
6714207 ATTGATTTCA
Statistics
Matches: 127, Mismatches: 44, Indels: 14
0.69 0.24 0.08
Matches are distributed among these distances:
43 4 0.03
44 120 0.94
45 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (43 bp):
TTGTAGCTTCGATCTACTCCATGGAACTTCAAGGAGATAAAAA
Found at i:6714074 original size:88 final size:88
Alignment explanation
Indices: 6713956--6714206 Score: 360
Period size: 88 Copynumber: 2.9 Consensus size: 88
6713946 AACTTCAATT
* *
6713956 GCTCCAATGCCATTTTAGGGAGAAAAGATTTGTAGCTTCGATCTACTCCGA-TGGAACTTCAAGG
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCC-ACTGGAACTTCAAGG
*
6714020 AGATAAAAATTGTAGCTTCGAGCC
65 AGATAAAAATTGTAGCTTCGAACC
* * *
6714044 GTTCCAATGCCATTTCAAGGAGAAGAGATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGA
** *
6714109 GATACGAATTGTGGCTTCGAACC
66 GATAAAAATTGTAGCTTCGAACC
* * * * *
6714132 GCTCCAATGTCATTTCAGGGAGAAGAAATTTGTAGTTTCGATCTACTCCACTGGAACTTTAAAGA
1 GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGA
6714197 GATAAAAATT
66 GATAAAAATT
6714207 ATTGATTTCA
Statistics
Matches: 143, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
87 1 0.01
88 142 0.99
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (88 bp):
GCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGA
GATAAAAATTGTAGCTTCGAACC
Found at i:6714313 original size:86 final size:85
Alignment explanation
Indices: 6714219--6714724 Score: 301
Period size: 86 Copynumber: 5.8 Consensus size: 85
6714209 TGATTTCAAC
* * * *
6714219 CTGCTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATGCTGGCTTAAATCTACTCCACTACTGCTTAGGGAG
6714284 ATAAGATTTGTTATCTTTGAT
66 ATAAGATTTGTTATCTTT-AT
* * * * *
6714305 CTGTTCCACTACTGCTTAGGGAGACAAGAT-CT-ACAATATTCAACCTACTCCACTACTGCTTAA
1 CTGCTCCACTACTGCTTAGGGAGACAAGATGCTGGC----TTAAATCTACTCCACTACTGCTTAG
* ** *
6714368 GGAGATAAGA--TGGTGGCTTAAAT
62 GGAGATAAGATTTGTTATCTT-TAT
* * *** * *
6714391 CTGCTCCACTGCTGCTTAGGGAGACAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGA-T-GCTGGCTTAAATCTACTCCACTACTGCTTAGGG
* * *
6714456 AGATAAGATCTGTAATCTTTAGC
64 AGATAAGATTTGTTATCTTTA-T
* * *** * *
6714479 CTACTCCACTACTGCTTAGAGAGATGGGATGATGGCTTAAATCTGCTCCACTACTGCTTAGGGAG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATGCTGGCTTAAATCTACTCCACTACTGCTTAGGGAG
* **** *
6714544 ACAAGATTCACCATCTTCAAT
66 ATAAGATTTGTTATCTT-TAT
* * * * * ** *
6714565 CTGCTCTACTACTG-TTATGGAAGATAAGAT-CTGTAATCTTCAGCCTACTCCACTACTGTTTAG
1 CTGCTCCACTACTGCTTA-GGGAGACAAGATGCTG---GCTTAAATCTACTCCACTACTGCTTAG
* * * *
6714628 GGAGATAGGA--TGGTAGCTTAAAT
62 GGAGATAAGATTTGTTATCTT-TAT
** ** * *
6714651 CTGCTCCACTTTTGCTTAGGGAGACAAGATTCGC-GGTCTTCGATCTTCTCTACTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGA-T-GCTGG-CTTAAATCTACTCCACTACTGCTTAGG
6714715 GAGATAAGAT
63 GAGATAAGAT
6714725 CTGTGAATTC
Statistics
Matches: 317, Mismatches: 80, Indels: 45
0.72 0.18 0.10
Matches are distributed among these distances:
84 1 0.00
85 6 0.02
86 209 0.66
87 8 0.03
88 90 0.28
89 2 0.01
90 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (85 bp):
CTGCTCCACTACTGCTTAGGGAGACAAGATGCTGGCTTAAATCTACTCCACTACTGCTTAGGGAG
ATAAGATTTGTTATCTTTAT
Found at i:6714320 original size:44 final size:44
Alignment explanation
Indices: 6714213--6714724 Score: 335
Period size: 44 Copynumber: 11.8 Consensus size: 44
6714203 AATTATTGAT
* * * * **
6714213 TTCAACCTGCTCCACTACTACTTAGGGAGATAGGA--TGGTGGC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
* * *
6714255 TTAAATCTACTCCACTACTGCTTAGGGAGATAAGATTTGTTATC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
** * * * * * *
6714299 TTTGATCTGTTCCACTACTGCTTAGGGAGACAAGATCTACAATA
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
* * * * **
6714343 TTCAACCTACTCCACTACTGCTTAAGGAGATAAGA--TGGTGGC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
* * * ** *
6714385 TTAAATCTGCTCCACTGCTGCTTAGGGAGACAAGATTCACCATC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
*
6714429 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG-TAATC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCT-ATC
* ** * * ** * **
6714473 TTTAGCCTACTCCACTACTGCTTAGAGAGATGGGA--TGATGGC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
* * ** *
6714515 TTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCACCATC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
* * *
6714559 TTCAATCTGCTCTACTACTG-TTATGGAAGATAAGATCTG-TAATC
1 TTCAATCTGCTCCACTACTGCTTA-GGGAGATAAGATTTGCT-ATC
** * * * * *
6714603 TTCAGCCTACTCCACTACTGTTTAGGGAGATAGGA--TGGTAGC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
* ** * * **
6714645 TTAAATCTGCTCCACTTTTGCTTAGGGAGACAAGATTCGCGGTC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
* * *
6714689 TTCGATCTTCTCTACTACTGCTTAGGGAGATAAGAT
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
6714725 CTGTGAATTC
Statistics
Matches: 347, Mismatches: 109, Indels: 26
0.72 0.23 0.05
Matches are distributed among these distances:
42 120 0.35
43 5 0.01
44 219 0.63
45 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTATC
Found at i:6714356 original size:130 final size:130
Alignment explanation
Indices: 6714213--6714728 Score: 692
Period size: 130 Copynumber: 4.0 Consensus size: 130
6714203 AATTATTGAT
* * *
6714213 TTCAACCTGCTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
* **** ** * * ** *
6714278 AGGGAGATAAGATTTGTTATCTTTGATCTGTTCCACTACTGCTTAGGGAGACAAGATCTACAATA
66 AGGGAGACAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
* * *
6714343 TTCAACCTACTCCACTACTGCTTAAGGAGATAAGATGGTGGCTTAAATCTGCTCCACTGCTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
6714408 AGGGAGACAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
66 AGGGAGACAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
* * * * *
6714473 TTTAGCCTACTCCACTACTGCTTAGAGAGATGGGATGATGGCTTAAATCTGCTCCACTACTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
* *
6714538 AGGGAGACAAGATTCACCATCTTCAATCTGCTCTACTACTG-TTATGGAAGATAAGATCTGTAAT
66 AGGGAGACAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTA-GGGAGATAAGATCTGTAAT
6714602 C
130 C
* * * **
6714603 TTCAGCCTACTCCACTACTGTTTAGGGAGATAGGATGGTAGCTTAAATCTGCTCCACTTTTGCTT
1 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
* ** * * *
6714668 AGGGAGACAAGATTCGCGGTCTTCGATCTTCTCTACTACTGCTTAGGGAGATAAGATCTGT
66 AGGGAGACAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
6714729 GAATTCACCG
Statistics
Matches: 342, Mismatches: 42, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
129 3 0.01
130 336 0.98
131 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (130 bp):
TTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTT
AGGGAGACAAGATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
Found at i:6721397 original size:3 final size:3
Alignment explanation
Indices: 6721384--6721494 Score: 73
Period size: 3 Copynumber: 36.3 Consensus size: 3
6721374 GTTTAATAGT
* ** * * * * *
6721384 ATA ACA ATA ATA ATA ATA GCA ATG ATA ATA ATA ATT TTG GTA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* *
6721430 ATA ATA ATA ATA ATA AT- ATA AAA ATA ATA ATA GTA ATA ATA GATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA
*
6721476 ATTA ATA AT- GTA ATA ATA A
1 A-TA ATA ATA ATA ATA ATA A
6721495 GTAAATAAAC
Statistics
Matches: 83, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
2 3 0.04
3 69 0.83
4 9 0.11
5 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6721455 original size:17 final size:16
Alignment explanation
Indices: 6721424--6721461 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
6721414 ATAATTTTGG
*
6721424 TAATAAATAATAATAA
1 TAATAAATAAAAATAA
6721440 TAATAATATAAAAATAA
1 TAATAA-ATAAAAATAA
6721457 TAATA
1 TAATA
6721462 GTAATAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATAAATAAAAATAA
Found at i:6726988 original size:34 final size:34
Alignment explanation
Indices: 6726940--6727012 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
6726930 CCTTACAATT
* *
6726940 ATAATTTATAATTAGTAGTTTAAAAATTTTTAGA
1 ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
6726974 ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
1 ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
6727008 ATAAA
1 ATAAA
6727013 CAAAATTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (34 bp):
ATAAATTATAATTAGTAGTTTAAAAATTGTTAGA
Found at i:6727053 original size:26 final size:26
Alignment explanation
Indices: 6727014--6727068 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
6727004 TAGAATAAAC
6727014 AAAATTGTGCTAATTTTATT-TTTAA
1 AAAATTGTGCTAATTTTATTATTTAA
*
6727039 AAAAGTTGTGTTAATTTTATTGATTTAA
1 AAAA-TTGTGCTAATTTTATT-ATTTAA
6727067 AA
1 AA
6727069 TAGAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 4 0.15
26 15 0.58
28 7 0.27
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (26 bp):
AAAATTGTGCTAATTTTATTATTTAA
Found at i:6734240 original size:8 final size:8
Alignment explanation
Indices: 6734217--6734265 Score: 62
Period size: 8 Copynumber: 6.0 Consensus size: 8
6734207 TACTTAGAAT
6734217 TTTTAAAA
1 TTTTAAAA
* *
6734225 ATTAAAAA
1 TTTTAAAA
6734233 TTTTAAAA
1 TTTTAAAA
6734241 TTTTAAAA
1 TTTTAAAA
6734249 TTTTAAATA
1 TTTTAAA-A
*
6734258 TATTAAAA
1 TTTTAAAA
6734266 AATGTTAAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
8 28 0.80
9 7 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TTTTAAAA
Found at i:6735020 original size:9 final size:9
Alignment explanation
Indices: 6735008--6735040 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
6734998 ATATTTAAAA
6735008 TTTTAATTT
1 TTTTAATTT
6735017 TTTTAATTT
1 TTTTAATTT
*
6735026 TTTTAAGTT
1 TTTTAATTT
6735035 TTTTAA
1 TTTTAA
6735041 AAGTTTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (9 bp):
TTTTAATTT
Found at i:6735125 original size:18 final size:18
Alignment explanation
Indices: 6735085--6735124 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6735075 TACCTATTAA
*
6735085 AAAATATATTAAAATTTT
1 AAAATATATTAAAATATT
*
6735103 AAAATATATTGAATATATT
1 AAAATATATT-AAAATATT
6735122 AAA
1 AAA
6735125 TTTTAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
AAAATATATTAAAATATT
Found at i:6735189 original size:71 final size:70
Alignment explanation
Indices: 6735099--6735381 Score: 252
Period size: 71 Copynumber: 4.0 Consensus size: 70
6735089 TATATTAAAA
* *
6735099 TTTTAAAATATATTGAATATATT-AAATTTTAAAATTGGTTATACTTAACATTTTTTTAATATAT
1 TTTTAAAATATATTAAATATATTAAAATTTTAAAATTGATTATACTTAACA-TTTTTTAATATAT
6735163 TTAATT
65 TTAATT
*
6735169 TTTTAAAAATGTATTAAATATATTAAAATTTTAAAATTGATTATACTTAACATTTTTTAATATAT
1 TTTT-AAAATATATTAAATATATTAAAATTTTAAAATTGATTATACTTAACATTTTTTAATATAT
6735234 TTAATT
65 TTAATT
* * * * * * * * * * * ***
6735240 TTTTTAAGTTTTTTAAA-ATTTTAAATATATTAAGAAAATT-TTTTTGTCTTTACCTATTAAAAA
1 TTTTAAAATATATTAAATATATTAAA-AT-TT--TAAAATTGATTAT-ACTTAACAT-TTTTTAA
*
6735303 TATATATTAAATA
60 TATAT-TT-AATT
* * *
6735316 TATTAAAAT-T-TTAAATATAATAAAATTTTAAAATTAATTATACTTAACATTTTTTAATATATT
1 TTTTAAAATATATTAAATATATTAAAATTTTAAAATTGATTATACTTAACATTTTTTAATATATT
6735379 TAA
66 TAA
6735382 AATTTTAGAA
Statistics
Matches: 169, Mismatches: 32, Indels: 26
0.74 0.14 0.11
Matches are distributed among these distances:
68 2 0.01
69 9 0.05
70 24 0.14
71 54 0.32
72 32 0.19
73 14 0.08
74 16 0.09
75 9 0.05
76 9 0.05
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (70 bp):
TTTTAAAATATATTAAATATATTAAAATTTTAAAATTGATTATACTTAACATTTTTTAATATATT
TAATT
Found at i:6735353 original size:17 final size:17
Alignment explanation
Indices: 6735309--6735347 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
6735299 AAAATATATA
*
6735309 TTAAATATATTAAAATT
1 TTAAATATAATAAAATT
6735326 TTAAATATAATAAAATT
1 TTAAATATAATAAAATT
6735343 TTAAA
1 TTAAA
6735348 ATTAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATATAATAAAATT
Found at i:6735381 original size:19 final size:20
Alignment explanation
Indices: 6735349--6735387 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
6735339 AATTTTAAAA
*
6735349 TTAATTATACTTAACATTTT
1 TTAATTATACTTAAAATTTT
*
6735369 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
6735388 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAATTATACTTAAAATTTT
Found at i:6737700 original size:11 final size:11
Alignment explanation
Indices: 6737684--6737714 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
6737674 GTAATGTTAA
6737684 AATATATACAT
1 AATATATACAT
6737695 AATATATACAT
1 AATATATACAT
6737706 ATATATATA
1 A-ATATATA
6737715 AAATAGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:6737825 original size:21 final size:22
Alignment explanation
Indices: 6737769--6737831 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
6737759 TATATATATA
6737769 ATAATAAAATAAAATAATAAGTG
1 ATAATAAAA-AAAATAATAAGTG
*** *
6737792 ATAATAGTGAAAATAATATGT-
1 ATAATAAAAAAAATAATAAGTG
*
6737813 ATAATAACAAAAATAATAA
1 ATAATAAAAAAAATAATAA
6737832 TATATAAGAA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
21 15 0.47
22 11 0.34
23 6 0.19
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (22 bp):
ATAATAAAAAAAATAATAAGTG
Found at i:6738210 original size:3 final size:3
Alignment explanation
Indices: 6738179--6738426 Score: 100
Period size: 3 Copynumber: 84.3 Consensus size: 3
6738169 TATAAGTAAA
*
6738179 AAT AAGT AAT AGT AAT GAA- AAT AAT -AT AAT AAT AAT -AT AA- AAGGT
1 AAT AA-T AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AA--T
* * *
6738224 GAAT -AT AAT -AT AAT AAT ATT AA- AAT AAA AAT AAT AAT AA- AGT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
6738266 AAT AGAT AAT AAT AA- ATAT AAT AAT AGA- AAT -AT AAT ATT AA- AGAT
1 AAT A-AT AAT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT AAT A-AT
* * *
6738311 AAT ACT AA- ATAT AAT -AT AAT AAT AAT -AT AAT AAT GAT AGT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
6738354 GAT GAT AAT ACT AAT -AT AAA AAG AAT AGAT AA- AAT AGT AGT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
*
6738398 AAT AGAT -AC AAT AAT AAT AAT ATAT AAT A
1 AAT A-AT AAT AAT AAT AAT AAT A-AT AAT A
6738427 TGGTATTAAA
Statistics
Matches: 185, Mismatches: 29, Indels: 62
0.67 0.11 0.22
Matches are distributed among these distances:
2 30 0.16
3 132 0.71
4 21 0.11
6 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.08, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:6738214 original size:11 final size:11
Alignment explanation
Indices: 6738198--6738344 Score: 96
Period size: 11 Copynumber: 13.3 Consensus size: 11
6738188 TAGTAATGAA
6738198 AATAATATAAT
1 AATAATATAAT
6738209 AATAATATAA-
1 AATAATATAAT
6738219 AAGGTGAATATAATAT
1 AA--T-AATAT-A-AT
6738235 AATAATATTAA-
1 AATAATA-TAAT
6738246 AATAA-A-AAT
1 AATAATATAAT
6738255 AATAATA-AAGT
1 AATAATATAA-T
*
6738266 AAT-AGATAAT
1 AATAATATAAT
6738276 AATAAATATAAT
1 AAT-AATATAAT
*
6738288 AATAGAAAT-AT
1 AATA-ATATAAT
* *
6738299 AATATTAAAGAT
1 AATAATATA-AT
*
6738311 AATACTA-AAT
1 AATAATATAAT
6738321 -ATAATATAAT
1 AATAATATAAT
6738331 AATAATATAAT
1 AATAATATAAT
6738342 AAT
1 AAT
6738345 GATAGTAATG
Statistics
Matches: 110, Mismatches: 8, Indels: 36
0.71 0.05 0.23
Matches are distributed among these distances:
8 2 0.02
9 10 0.09
10 18 0.16
11 42 0.38
12 22 0.20
13 10 0.09
14 3 0.03
15 1 0.01
16 2 0.02
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.32
Consensus pattern (11 bp):
AATAATATAAT
Found at i:6738327 original size:122 final size:124
Alignment explanation
Indices: 6738199--6738427 Score: 290
Period size: 122 Copynumber: 1.9 Consensus size: 124
6738189 AGTAATGAAA
* *
6738199 ATAATATAATAATAATATAA-AAGGTGAATA-TAAT-ATAATAATATTAAAATAAAAATAATA-A
1 ATAATATAATAATAATATAATAA--TG-ATAGTAATGATAATAATACTAAAATAAAAAGAATAGA
* * *
6738260 TAAAGTAATAGATAATAATAAATATAATAAT-AGAA-ATATAATATTAAAGATAATACTAAAT
63 TAAAATAATAG-TAAAAATAAATACAATAATAAGAATATATAATATTAAAGATAATACTAAAT
* *
6738321 ATAATATAATAATAATATAATAATGATAGTAATGATGATAATACTAATATAAAAAGAATAGATAA
1 ATAATATAATAATAATATAATAATGATAGTAATGATAATAATACTAAAATAAAAAGAATAGATAA
* * *
6738386 AATAGTAGTAAAAATAGATACAATAATAATAATATATAATAT
66 AATAATAGTAAAAATAAATACAATAATAAGAATATATAATAT
6738428 GGTATTAAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
120 3 0.03
121 6 0.07
122 58 0.64
123 15 0.16
124 9 0.10
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (124 bp):
ATAATATAATAATAATATAATAATGATAGTAATGATAATAATACTAAAATAAAAAGAATAGATAA
AATAATAGTAAAAATAAATACAATAATAAGAATATATAATATTAAAGATAATACTAAAT
Found at i:6738413 original size:12 final size:11
Alignment explanation
Indices: 6738251--6738417 Score: 54
Period size: 11 Copynumber: 15.2 Consensus size: 11
6738241 ATTAAAATAA
6738251 AAATAATA-AT
1 AAATAATAGAT
6738261 AAAGTAATAGAT
1 AAA-TAATAGAT
*
6738273 -AATAATAAAT
1 AAATAATAGAT
6738283 ATAATAATAGA-
1 A-AATAATAGAT
*
6738294 AATATAATA-TT
1 AA-ATAATAGAT
*
6738305 AAAGATAATA-CT
1 -AA-ATAATAGAT
6738317 AAAT-ATA-AT
1 AAATAATAGAT
6738326 ATAATAATA-AT
1 A-AATAATAGAT
6738337 ATAATAAT-GAT
1 A-AATAATAGAT
*
6738348 -AGTAATGATGAT
1 AAATAAT-A-GAT
* *
6738360 AATACTAATATAA
1 AA-A-TAATAGAT
*
6738373 AAAGAATAGAT
1 AAATAATAGAT
*
6738384 AAAATAGTAG-T
1 -AAATAATAGAT
6738395 AAA-AATAGAT
1 AAATAATAGAT
6738405 ACAATAATA-AT
1 A-AATAATAGAT
6738416 AA
1 AA
6738418 TATATAATAT
Statistics
Matches: 121, Mismatches: 16, Indels: 40
0.68 0.09 0.23
Matches are distributed among these distances:
9 14 0.12
10 22 0.18
11 42 0.35
12 34 0.28
13 4 0.03
14 1 0.01
15 4 0.03
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (11 bp):
AAATAATAGAT
Found at i:6739748 original size:18 final size:19
Alignment explanation
Indices: 6739706--6739751 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
6739696 TGGTTTAAGT
**
6739706 GGTTTTGGGTAGTTAGTTG
1 GGTTTTGGGTAGTTAAATG
6739725 GG-TTTGGGTAG-TAAATG
1 GGTTTTGGGTAGTTAAATG
6739742 GGTTTTGGGT
1 GGTTTTGGGT
6739752 TATAATGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.25
18 16 0.67
19 2 0.08
ACGTcount: A:0.13, C:0.00, G:0.43, T:0.43
Consensus pattern (19 bp):
GGTTTTGGGTAGTTAAATG
Found at i:6740710 original size:26 final size:26
Alignment explanation
Indices: 6740681--6740788 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
6740671 TGGTACAAAT
6740681 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6740707 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6740733 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6740759 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6740785 TGAT
1 TGAT
6740789 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6754895 original size:37 final size:37
Alignment explanation
Indices: 6754854--6754936 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
6754844 AAAACAAAAT
6754854 CATATGATTTAACTACTTAATTGAAAAACCTGGACAA
1 CATATGATTTAACTACTTAATTGAAAAACCTGGACAA
6754891 CATATGATTTAACTACTTAATTGAAAAACCTGGACAA
1 CATATGATTTAACTACTTAATTGAAAAACCTGGACAA
*
6754928 CATGTGATT
1 CATATGATT
6754937 CATTTGAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (37 bp):
CATATGATTTAACTACTTAATTGAAAAACCTGGACAA
Found at i:6757789 original size:38 final size:38
Alignment explanation
Indices: 6757747--6757824 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
6757737 AACCCCTGAG
6757747 ATATTAGTTTTACAAGATCAATGTCTATCTTTTGATTT
1 ATATTAGTTTTACAAGATCAATGTCTATCTTTTGATTT
*
6757785 ATATTAGTTTTATAAGATCAATGTCTATCTTTTGATTT
1 ATATTAGTTTTACAAGATCAATGTCTATCTTTTGATTT
6757823 AT
1 AT
6757825 GCTTGTATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.51
Consensus pattern (38 bp):
ATATTAGTTTTACAAGATCAATGTCTATCTTTTGATTT
Found at i:6761955 original size:29 final size:30
Alignment explanation
Indices: 6761879--6761955 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
6761869 ACACAAATTA
* *
6761879 AAATCAGAGTTTCATGTATATATTTGAACT
1 AAATCAAAGTTTCATGTATATAATTGAACT
* *
6761909 ATGATCAAAGTTTAATGTATATAATT-ACACT
1 A-AATCAAAGTTTCATGTATATAATTGA-ACT
6761940 AAATCAAAG-TTCATGT
1 AAATCAAAGTTTCATGT
6761956 GTCAAATTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 6 0.15
30 9 0.23
31 24 0.62
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (30 bp):
AAATCAAAGTTTCATGTATATAATTGAACT
Found at i:6773790 original size:4 final size:4
Alignment explanation
Indices: 6773781--6773818 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
6773771 TTTGAGTATC
6773781 CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CT
1 CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CT
6773819 TATGATCTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.00, C:0.26, G:0.24, T:0.50
Consensus pattern (4 bp):
CTGT
Found at i:6777353 original size:114 final size:114
Alignment explanation
Indices: 6777153--6777382 Score: 442
Period size: 114 Copynumber: 2.0 Consensus size: 114
6777143 ATCGGTTTAA
6777153 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
1 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
6777218 ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
66 ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
6777267 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
1 AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
* *
6777332 ATAAAAGGAGTGAAAAAGTATAAACAAAACAAATCTTCCTTAAAGAATC
66 ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
6777381 AG
1 AG
6777383 TCACAAGATG
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (114 bp):
AGAAGCAGCTCTATGGGGTTGAATTGACCTCCCAGGAAAGTCACCCATGCCCTAGGGGAATTGTA
ATAAAAGAAGTGAAAAAGTATAAACAAAACAAATCTTCCCTAAAGAATC
Found at i:6788526 original size:470 final size:468
Alignment explanation
Indices: 6787573--6788763 Score: 1665
Period size: 476 Copynumber: 2.5 Consensus size: 468
6787563 ATCTACAAAT
* *
6787573 ATAAACAAGGGAACAAAAAGTAACGTTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATAA
1 ATAAACAAGGGAACAAAAA-TAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGA
* * *
6787638 GATAGTTGACCAATGCTAGATTGCATCAGTACTTCCAACAAA-TCCACTTTCAGAATCTTTTGAC
65 GATGGTTGACCAATGCTAGATTGCATCAGAACTTTCAACAAATTCCACTTTCAGAATCTTTTGAC
* * *
6787702 ATTAAATACAGTGGTTGATTGTTAATGCAATGATTTGCGATAAACC-AACACAATATAATTATTA
130 ATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAA-AGAATCTAATTATTA
* *
6787766 TACATCATAATGAACTAAACAAATTTGCCAAAAGAACTTATCAACTACATGTGGCAAGTTACAAA
194 TACATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAAA
* * *
6787831 GAAACATATTCCATTTTTGATAATAGCTACAAAACCTAGAATCTAATAGTGCCAATGGAATAAAA
259 GAAACAGATTCC--------T-ATAGCTACAAAACCTAGAATCTAATAGAGCCAACGGAATAAAA
* * * *
6787896 AATGTCATCAAATCGTAAAACCCAGAAATCTTCATTCACTTGGGTTTCACGAGTAGCCAAAGGGC
315 AATGTCATCAAATCGAAAAAACCAGAAATATTCATTCACTTAGGTTTCACGAGTAGCCAAAGGGC
* *
6787961 ACTTCTTACAACTTCTTGTGACATTGACTGGAGAAAATTCCTTAAATAATAGCCATATAAGGCAC
380 ACTTCTTACAACTTCTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCAC
* *
6788026 ATGTTACTTGTAGTCAACACTCTA
445 ATATTACTTGTAGTCAACACCCTA
6788050 ATAAACAAGGGAACAACAAATAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGA
1 ATAAACAAGGGAACAA-AAATAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGA
* * *
6788115 GATGGTTGGCCAATGCTAGATTGCATCCA-AACTTTCAACAAAATTCCACTTTCAAAATGTTTTG
65 GATGGTTGACCAATGCTAGATTGCAT-CAGAACTTTCAAC-AAATTCCACTTTCAGAATCTTTTG
* * * * * *
6788179 AAATTAAATACAGTAGTTGATTGTTAACGCAAAGATTCACGATAAACCGAAAGAATCTATTTATT
128 ACATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAAAGAATCTAATTATT
* *
6788244 ATACATCATAACGAACTAACCAACTTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAA
193 ATACATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAA
* *
6788309 AGAAACGGATTCC-ATAGCTACAAAACCTAGAATCTAATTGAGCCAACGGAA-AGATAGAAA-GT
258 AGAAACAGATTCCTATAGCTACAAAACCTAGAATCTAATAGAGCCAACGGAATA-A-A-AAATGT
* **
6788371 CATCGAATCGAAAAAACCAGAAATATTTGTTCACTTAGGTTTCACGAGTAGCCAAAGGGCACTTC
320 CATCAAATCGAAAAAACCAGAAATATTCATTCACTTAGGTTTCACGAGTAGCCAAAGGGCACTTC
** * *
6788436 TTATGACTTTTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCTCATATT
385 TTACAACTTCTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCACATATT
6788501 ACTTGTAGTCAACACCCTA
450 ACTTGTAGTCAACACCCTA
*
6788520 ATAAACAAGGGAACAAGAAATAACATTTCTACTTAGGTATAACCATAACATTCAAAAGCTTTAGA
1 ATAAACAAGGGAACAA-AAATAACATTTCTACTTAAG--T----ATAACATTCAAAAGCTTTAGA
* * * * * *
6788585 AAATGAGATGGTTGCCCGATGCTAGATTGCATCAGAACTGTCAACGTAGTTCCACTTCCAGAATC
59 AAATGAGATGGTTGACCAATGCTAGATTGCATCAGAACTTTCAAC-AAATTCCACTTTCAGAATC
*
6788650 TTTTGACATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGACAGAATCTAA
123 TTTTGACATTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAAAGAATCTAA
*
6788715 TTATTATACATCATAATGAACTAACCAAATTTGTCAAAAGAACTTATCA
188 TTATTATACATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCA
6788764 TGGCAGGTTT
Statistics
Matches: 637, Mismatches: 62, Indels: 31
0.87 0.08 0.04
Matches are distributed among these distances:
468 1 0.00
469 36 0.06
470 172 0.27
471 3 0.00
472 1 0.00
475 2 0.00
476 178 0.28
477 91 0.14
478 8 0.01
479 143 0.22
480 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (468 bp):
ATAAACAAGGGAACAAAAATAACATTTCTACTTAAGTATAACATTCAAAAGCTTTAGAAAATGAG
ATGGTTGACCAATGCTAGATTGCATCAGAACTTTCAACAAATTCCACTTTCAGAATCTTTTGACA
TTAAATACAGTGGTTGATTGTTAATGCAATGATTCGCGATAAACCGAAAGAATCTAATTATTATA
CATCATAATGAACTAACCAAATTTGCCAAAAGAACTTATCAACTACATATGGCAAGTTACAAAGA
AACAGATTCCTATAGCTACAAAACCTAGAATCTAATAGAGCCAACGGAATAAAAAATGTCATCAA
ATCGAAAAAACCAGAAATATTCATTCACTTAGGTTTCACGAGTAGCCAAAGGGCACTTCTTACAA
CTTCTTGTGACATTAACTGGAGAAAATTCCTTAAATAATAACCATATAAGGCACATATTACTTGT
AGTCAACACCCTA
Found at i:6788898 original size:70 final size:70
Alignment explanation
Indices: 6788812--6789019 Score: 321
Period size: 70 Copynumber: 3.0 Consensus size: 70
6788802 TAAACTGGTT
* * * * *
6788812 CAAAGAAATGGCTTCCATTTTTGTTAATAGCTACAAAA-CTAGAATCTAATTGCGGCAATGGAAA
1 CAAAGAAACGGATTCCA-TTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAA
6788876 GATAAA
65 GATAAA
* *
6788882 CAAAGAAACGGATTCCATTTTGTCGATAGCTACAAAATCTAGAATCTAATTGTGTCAATGGAAAG
1 CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAAG
6788947 ATAAA
66 ATAAA
*
6788952 CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCT-ATTGTGCCAATTGAAAG
1 CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAAG
6789016 ATAA
66 ATAA
6789020 GAAGTCATTG
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
69 37 0.29
70 91 0.71
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (70 bp):
CAAAGAAACGGATTCCATTTTGTTGATAGCTACAAAATCTAGAATCTAATTGTGCCAATGGAAAG
ATAAA
Found at i:6805391 original size:31 final size:31
Alignment explanation
Indices: 6805355--6805453 Score: 96
Period size: 31 Copynumber: 3.3 Consensus size: 31
6805345 CTTTAATTTG
6805355 AATTAAATTAATAAATTTTGTAAATATTAAA
1 AATTAAATTAATAAATTTTGTAAATATTAAA
* * * * *
6805386 AATTAAATTTATTAATTTTTTATAT-TTAAG
1 AATTAAATTAATAAATTTTGTAAATATTAAA
* *
6805416 AA-CAAATTAATATAA-TGTGTAAATATTAAA
1 AATTAAATTAATA-AATTTTGTAAATATTAAA
*
6805446 AGTTAAAT
1 AATTAAAT
6805454 ATATTATTAA
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
29 13 0.25
30 13 0.25
31 25 0.49
ACGTcount: A:0.51, C:0.01, G:0.05, T:0.43
Consensus pattern (31 bp):
AATTAAATTAATAAATTTTGTAAATATTAAA
Found at i:6807378 original size:25 final size:25
Alignment explanation
Indices: 6807350--6807399 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
6807340 AAATACCTTT
6807350 CTTTTTATGGTTGCTGAATCTTGAG
1 CTTTTTATGGTTGCTGAATCTTGAG
*
6807375 CTTTTTGTGGTTGCTGAATCTTGAG
1 CTTTTTATGGTTGCTGAATCTTGAG
6807400 AAACTCCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.14, C:0.12, G:0.26, T:0.48
Consensus pattern (25 bp):
CTTTTTATGGTTGCTGAATCTTGAG
Found at i:6812426 original size:3 final size:3
Alignment explanation
Indices: 6812411--6812451 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
6812401 AAAAGGAGGT
* * *
6812411 GGC GGC AGC GGC GGC GGC GGC GGC GGC GGC AGC GGC AGC GG
1 GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GG
6812452 TGAGGGTGGC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.07, C:0.32, G:0.61, T:0.00
Consensus pattern (3 bp):
GGC
Found at i:6815149 original size:22 final size:22
Alignment explanation
Indices: 6815118--6815164 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
6815108 GAATAGTATC
*
6815118 ACACGCCTGTATGGCTTATATG
1 ACACGCCTGTATGGCTGATATG
* *
6815140 ACACGTCTGTGTGGCTGATATG
1 ACACGCCTGTATGGCTGATATG
6815162 ACA
1 ACA
6815165 TGCCCGTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (22 bp):
ACACGCCTGTATGGCTGATATG
Found at i:6816155 original size:6 final size:6
Alignment explanation
Indices: 6816146--6816185 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
6816136 CACCGTAAGG
6816146 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAA
6816186 TAGTCAGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.17
Consensus pattern (6 bp):
GTAACA
Found at i:6817147 original size:8 final size:8
Alignment explanation
Indices: 6817120--6817177 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
6817110 TTATTTTAAC
6817120 TATTATAT
1 TATTATAT
6817128 TA-TACT-T
1 TATTA-TAT
6817135 TATTATAT
1 TATTATAT
*
6817143 TATTAAAT
1 TATTATAT
*
6817151 TATTATAA
1 TATTATAT
*
6817159 TAATATAT
1 TATTATAT
6817167 TATATATAT
1 TAT-TATAT
6817176 TA
1 TA
6817178 AATATCTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
7 6 0.15
8 27 0.68
9 7 0.17
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (8 bp):
TATTATAT
Found at i:6817182 original size:16 final size:16
Alignment explanation
Indices: 6817135--6817182 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
6817125 TATTATACTT
6817135 TATTATAT-TATTAAA
1 TATTATATATATTAAA
*
6817150 TTATTATA-ATA--ATA
1 -TATTATATATATTAAA
6817164 TATTATATATATTAAA
1 TATTATATATATTAAA
6817180 TAT
1 TAT
6817183 CTTATACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
13 7 0.27
14 5 0.19
16 14 0.54
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTATATATATTAAA
Found at i:6826773 original size:24 final size:24
Alignment explanation
Indices: 6826745--6826792 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
6826735 TGAATATTGA
*
6826745 TGGCTTAGTCTACAACCTACATGG
1 TGGCTTAGTCCACAACCTACATGG
* * *
6826769 TGGCTTCGTCCACGACCTATATGG
1 TGGCTTAGTCCACAACCTACATGG
6826793 CAGCTTGTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (24 bp):
TGGCTTAGTCCACAACCTACATGG
Found at i:6828762 original size:21 final size:19
Alignment explanation
Indices: 6828732--6828784 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
6828722 TAGTGCTTTC
6828732 TTTTA-AATAATCAAAATTTA
1 TTTTATAATAATCAAAA--TA
*
6828752 TTTTATAATAA-GAAAATA
1 TTTTATAATAATCAAAATA
*
6828770 TTTTGTAATAATCAA
1 TTTTATAATAATCAA
6828785 TATCATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 12 0.43
19 2 0.07
20 9 0.32
21 5 0.18
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (19 bp):
TTTTATAATAATCAAAATA
Found at i:6830239 original size:22 final size:22
Alignment explanation
Indices: 6830214--6830271 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
6830204 CAGCACTTTG
**
6830214 GTGCTCTCTGATTAGTACTTCA
1 GTGCTCTCTGATTAACACTTCA
* ** *
6830236 GTGCTTTCTTCTTAACACTTTA
1 GTGCTCTCTGATTAACACTTCA
6830258 GTGCTCTCTG-TTAA
1 GTGCTCTCTGATTAA
6830272 GAACTACGGT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.45
Consensus pattern (22 bp):
GTGCTCTCTGATTAACACTTCA
Found at i:6832429 original size:16 final size:17
Alignment explanation
Indices: 6832410--6832446 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
6832400 TTATGAAGAA
*
6832410 TATTATTTAGAA-TTAT
1 TATTATTTAAAATTTAT
6832426 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
6832442 TATTA
1 TATTA
6832447 AAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:6832586 original size:5 final size:6
Alignment explanation
Indices: 6832570--6832635 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
6832560 TAAATATTTT
* ** * * * *
6832570 TAAAAA TAAAAA TAAAAA TTTATTA TTAATA TAATAA TATTAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA -TAAAAA TAAAAA TAAAAA TA-AAAA TAAAAA
6832620 TAAAAA TAAAAA TAAA
1 TAAAAA TAAAAA TAAA
6832636 GATTTATTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
6 41 0.85
7 7 0.15
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
TAAAAA
Found at i:6832624 original size:50 final size:50
Alignment explanation
Indices: 6832570--6832664 Score: 181
Period size: 50 Copynumber: 1.9 Consensus size: 50
6832560 TAAATATTTT
6832570 TAAAAATAAAAATAAAAATTTATTATTAATATAATAATATTAAATAAAAA
1 TAAAAATAAAAATAAAAATTTATTATTAATATAATAATATTAAATAAAAA
*
6832620 TAAAAATAAAAATAAAGATTTATTATTAATATAATAATATTAAAT
1 TAAAAATAAAAATAAAAATTTATTATTAATATAATAATATTAAAT
6832665 TTAACTTGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (50 bp):
TAAAAATAAAAATAAAAATTTATTATTAATATAATAATATTAAATAAAAA
Found at i:6832845 original size:11 final size:10
Alignment explanation
Indices: 6832829--6832862 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
6832819 AATTATGTTT
6832829 TATAAAATAAA
1 TATAAAA-AAA
6832840 TATAAAAAAA
1 TATAAAAAAA
*
6832850 TACAAAAAAA
1 TATAAAAAAA
6832860 TAT
1 TAT
6832863 TTTTCAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.67
11 7 0.33
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (10 bp):
TATAAAAAAA
Found at i:6839822 original size:18 final size:19
Alignment explanation
Indices: 6839779--6839829 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
6839769 TGGCTATTGC
*
6839779 AAATTTT-ATTTTAGTAAT
1 AAATTTTAATATTAGTAAT
*
6839797 AAAGTTTAATATTAGTAAT
1 AAATTTTAATATTAGTAAT
6839816 -AATTTTAAATATTA
1 AAATTTT-AATATTA
6839830 AAAAATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.39
19 17 0.61
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (19 bp):
AAATTTTAATATTAGTAAT
Found at i:6839857 original size:16 final size:15
Alignment explanation
Indices: 6839825--6839855 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6839815 TAATTTTAAA
6839825 TATTAAAAAATATTT
1 TATTAAAAAATATTT
*
6839840 TATTGAAAAATATTT
1 TATTAAAAAATATTT
6839855 T
1 T
6839856 TAAATTATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (15 bp):
TATTAAAAAATATTT
Found at i:6839999 original size:17 final size:18
Alignment explanation
Indices: 6839977--6840010 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6839967 ATTAAGTTTA
6839977 TATAAAAAATTA-ATTAT
1 TATAAAAAATTATATTAT
*
6839994 TATAAAATATTATATTA
1 TATAAAAAATTATATTA
6840011 AATTATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TATAAAAAATTATATTAT
Found at i:6844943 original size:3 final size:3
Alignment explanation
Indices: 6844935--6844969 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
6844925 TATGGTTTTA
6844935 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
6844970 AATAAAGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:6845102 original size:17 final size:17
Alignment explanation
Indices: 6845080--6845113 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
6845070 AAGTAAAAGA
6845080 TATTT-ATTGATTATTAT
1 TATTTAATTGA-TATTAT
6845097 TATTTAATTGATATTAT
1 TATTTAATTGATATTAT
6845114 ATTAGTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATTTAATTGATATTAT
Found at i:6846625 original size:37 final size:38
Alignment explanation
Indices: 6846584--6846666 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 38
6846574 TTCATGAGGT
* *
6846584 ACTGGGT-ACCACTTTACTTC-AGCTAGGCCGATGAGAC
1 ACTGGGTGACAACTTTACTTCGAACTA-GCCGATGAGAC
* * *
6846621 ACTGGGTGTCAACTTTACTTCGAACTATCCGATGAGGC
1 ACTGGGTGACAACTTTACTTCGAACTAGCCGATGAGAC
6846659 ACTGGGTG
1 ACTGGGTG
6846667 CCAAATTGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
37 7 0.18
38 28 0.72
39 4 0.10
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (38 bp):
ACTGGGTGACAACTTTACTTCGAACTAGCCGATGAGAC
Found at i:6846636 original size:38 final size:38
Alignment explanation
Indices: 6846594--6846666 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
6846584 ACTGGGTACC
*
6846594 ACTTTACTTC-AGCTAGGCCGATGAGACACTGGGTGTCA
1 ACTTTACTTCGAACTA-GCCGATGAGACACTGGGTGTCA
* *
6846632 ACTTTACTTCGAACTATCCGATGAGGCACTGGGTG
1 ACTTTACTTCGAACTAGCCGATGAGACACTGGGTG
6846667 CCAAATTGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
38 27 0.87
39 4 0.13
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (38 bp):
ACTTTACTTCGAACTAGCCGATGAGACACTGGGTGTCA
Found at i:6848654 original size:25 final size:27
Alignment explanation
Indices: 6848605--6848656 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
6848595 TTTTTAAAAG
*
6848605 TAATTTGTAATTAATTTTTAAATAATA
1 TAATTTGTAATTAACTTTTAAATAATA
*
6848632 TAATTT-TAATT-ACTTTTACATAATA
1 TAATTTGTAATTAACTTTTAAATAATA
6848657 ATATATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 12 0.52
26 5 0.22
27 6 0.26
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (27 bp):
TAATTTGTAATTAACTTTTAAATAATA
Found at i:6849277 original size:40 final size:40
Alignment explanation
Indices: 6849233--6849313 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
6849223 TCAAATACAT
6849233 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
* * * * **
6849273 TTAAAACAATTCTTAAAACAATACACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
6849313 T
1 T
6849314 AATAAAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.25
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:6849322 original size:20 final size:19
Alignment explanation
Indices: 6849299--6849356 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
6849289 AACAATACAC
6849299 AAATTGAAAATATATAATAA
1 AAATTGAAAATATA-AATAA
** *
6849319 AAATTGATTATATTAAAATTA
1 AAATTGAAAATA-T-AAATAA
6849340 AAATT-AAAATATAAATA
1 AAATTGAAAATATAAATA
6849357 TAATTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 4 0.13
19 1 0.03
20 14 0.47
21 10 0.33
22 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATTGAAAATATAAATAA
Found at i:6854505 original size:3 final size:3
Alignment explanation
Indices: 6854497--6854544 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
6854487 AATGCAAAAT
*
6854497 TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6854544 T
1 T
6854545 TTATTATTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6860060 original size:40 final size:40
Alignment explanation
Indices: 6860013--6860094 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
6860003 TAGAAGATAA
*
6860013 ACAAATTAAAAATATGAATATTTATCAAATTCTAAAACTT
1 ACAAATTAAAAAGATGAATATTTATCAAATTCTAAAACTT
6860053 ACAAATTAAAAAGATGAATATTTATCAAATTCTAAAACTT
1 ACAAATTAAAAAGATGAATATTTATCAAATTCTAAAACTT
6860093 AC
1 AC
6860095 TTGCATAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.33
Consensus pattern (40 bp):
ACAAATTAAAAAGATGAATATTTATCAAATTCTAAAACTT
Found at i:6864580 original size:21 final size:21
Alignment explanation
Indices: 6864554--6864593 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
6864544 ACACACCAAT
6864554 AGAAGCTCATGAGAGTTGAAC
1 AGAAGCTCATGAGAGTTGAAC
6864575 AGAAGCTCATGAGAGTTGA
1 AGAAGCTCATGAGAGTTGA
6864594 TCCACCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.30, T:0.20
Consensus pattern (21 bp):
AGAAGCTCATGAGAGTTGAAC
Found at i:6869101 original size:26 final size:26
Alignment explanation
Indices: 6869048--6869101 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
6869038 ATGAAAGTTT
* *
6869048 ACTTTTCAATTCATTCATACTAATAA
1 ACTTTTCAATTCATTCATACAAACAA
*
6869074 ACTTTTCAATTCATTGTATA-AAACAA
1 ACTTTTCAATTCATT-CATACAAACAA
6869100 AC
1 AC
6869102 AATAGGTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.41, C:0.19, G:0.02, T:0.39
Consensus pattern (26 bp):
ACTTTTCAATTCATTCATACAAACAA
Found at i:6870070 original size:17 final size:18
Alignment explanation
Indices: 6870044--6870099 Score: 69
Period size: 17 Copynumber: 3.1 Consensus size: 18
6870034 GGGATTTTTT
*
6870044 ATTTGAGGAAAAAACTA-
1 ATTTGGGGAAAAAACTAG
6870061 ATTTGGGGAAAAAACTAG
1 ATTTGGGGAAAAAACTAG
*
6870079 AGGTTGGGGAAAAAAACTAG
1 A-TTTGGGG-AAAAAACTAG
6870099 A
1 A
6870100 GGTGTGCATG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 16 0.47
18 1 0.03
19 6 0.18
20 11 0.32
ACGTcount: A:0.48, C:0.05, G:0.27, T:0.20
Consensus pattern (18 bp):
ATTTGGGGAAAAAACTAG
Found at i:6870094 original size:20 final size:19
Alignment explanation
Indices: 6870050--6870102 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
6870040 TTTTATTTGA
*
6870050 GGAAAAAACTA-A-TTTGG
1 GGAAAAAACTAGAGGTTGG
6870067 GGAAAAAACTAGAGGTTGG
1 GGAAAAAACTAGAGGTTGG
6870086 GGAAAAAAACTAGAGGT
1 GG-AAAAAACTAGAGGT
6870103 GTGCATGGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 11 0.34
18 1 0.03
19 6 0.19
20 14 0.44
ACGTcount: A:0.47, C:0.06, G:0.30, T:0.17
Consensus pattern (19 bp):
GGAAAAAACTAGAGGTTGG
Found at i:6870280 original size:12 final size:12
Alignment explanation
Indices: 6870263--6870294 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
6870253 CGGCCCGCCC
6870263 ATATTAATTTTT
1 ATATTAATTTTT
6870275 ATATT-ATTTTT
1 ATATTAATTTTT
6870286 ATA-TAATTT
1 ATATTAATTT
6870295 AAACATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:6870451 original size:11 final size:11
Alignment explanation
Indices: 6870433--6870473 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
6870423 ACAATAACAA
6870433 CAAAATAATAG
1 CAAAATAATAG
*
6870444 CAACATAATAG
1 CAAAATAATAG
* *
6870455 TAAAATAGTAG
1 CAAAATAATAG
6870466 CAAAATAA
1 CAAAATAA
6870474 GAAAAAATAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.61, C:0.10, G:0.10, T:0.20
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:6870451 original size:22 final size:21
Alignment explanation
Indices: 6870425--6870485 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
6870415 ATATCCAAAC
6870425 AATAACAACAAAATAATAGCAA
1 AATAACAA-AAAATAATAGCAA
* * * *
6870447 CATAATAGTAAAATAGTAGCAA
1 AATAACA-AAAAATAATAGCAA
*
6870469 AATAAGAAAAAATAATA
1 AATAACAAAAAATAATA
6870486 ATAAGAAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
21 8 0.27
22 22 0.73
ACGTcount: A:0.66, C:0.08, G:0.08, T:0.18
Consensus pattern (21 bp):
AATAACAAAAAATAATAGCAA
Found at i:6870759 original size:35 final size:34
Alignment explanation
Indices: 6870677--6870760 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 34
6870667 CACACCTCTA
* *
6870677 GAAAAAACTAAGGGATTTGGGGAAAATTTTTAGGG
1 GAAAAAACTAAGGGATTTAGGGAAAATATTTA-GG
*
6870712 GAAAAAGA-TAAGGGATTTAGGGAAACTAATTTA-G
1 GAAAAA-ACTAAGGGATTTAGGGAAAAT-ATTTAGG
6870746 GAATAAAACTAAGGG
1 GAA-AAAACTAAGGG
6870761 TAGCAAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
34 5 0.12
35 32 0.76
36 5 0.12
ACGTcount: A:0.45, C:0.04, G:0.29, T:0.23
Consensus pattern (34 bp):
GAAAAAACTAAGGGATTTAGGGAAAATATTTAGG
Found at i:6872880 original size:20 final size:20
Alignment explanation
Indices: 6872855--6872895 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
6872845 AGATTTGACA
6872855 TGATTCGGTTATTCTATTTT
1 TGATTCGGTTATTCTATTTT
6872875 TGATTCGGTTATTCTATTTT
1 TGATTCGGTTATTCTATTTT
6872895 T
1 T
6872896 ATTATGCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.15, T:0.61
Consensus pattern (20 bp):
TGATTCGGTTATTCTATTTT
Found at i:6880943 original size:40 final size:41
Alignment explanation
Indices: 6880899--6881053 Score: 158
Period size: 41 Copynumber: 3.8 Consensus size: 41
6880889 AATCACCTCA
*
6880899 AAAGG-TGAACAATA-TCGGCATTTTTGGTCCAAATACCGCT
1 AAAGGTTGAACAATAGT-GGCGTTTTTGGTCCAAATACCGCT
* * **
6880939 AAAGGTTGAGA-AATAGTGGCGTTTTTTGTCTAAACGCCGCT
1 AAAGGTTGA-ACAATAGTGGCGTTTTTGGTCCAAATACCGCT
* * * **
6880980 AAAGGTT-AAGCTATAGCGGCGTTTTT-GTTCAAATACTACT
1 AAAGGTTGAA-CAATAGTGGCGTTTTTGGTCCAAATACCGCT
6881020 AAAGGTTGAACAATAGTGGCGTTTTTGGTCCAAA
1 AAAGGTTGAACAATAGTGGCGTTTTTGGTCCAAA
6881054 CGTCGCAAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
39 1 0.01
40 35 0.38
41 54 0.59
42 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (41 bp):
AAAGGTTGAACAATAGTGGCGTTTTTGGTCCAAATACCGCT
Found at i:6882287 original size:117 final size:116
Alignment explanation
Indices: 6882158--6882568 Score: 436
Period size: 115 Copynumber: 3.6 Consensus size: 116
6882148 TTCTTGGTCC
* * * * *
6882158 AAACACCGCGAATATGTATTAAAAGAT-TGCAAAATATTGTCGTTTTAAGCTTTG-TTTTTAGTG
1 AAACACCGCGAATATGTATTAAGAG-TGTGCAAAATATTGTCGTTTTTA--TCTGCCTATTAGTG
* * * * * *
6882221 GCATTTTTACTAAAATGCCACAAAAGGATATCCATTAGTGGTGTTTTCACAAAA
63 GCGTTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCACAAAA
* * ** *
6882275 AAACACCGCGAATATGTTTTAAGAGTGTGTAAAATGCTGTCGTTTTTATCTGCCTATTAGTGGTG
1 AAACACCGCGAATATGTATTAAGAGTGTGCAAAATATTGTCGTTTTTATCTGCCTATTAGTGGCG
*
6882340 TTTTTACTAAAACGCTGCAAAA-GATATTCGTTAGTGGCGTTTTCAC-AAA
66 TTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCACAAAA
** * * *
6882389 AAACGTCGTGAATATGTATTAAGAGTGTGCAAAAAATTTTCGTTTTTATCTGCCTATTAGTGGCG
1 AAACACCGCGAATATGTATTAAGAGTGTGCAAAATATTGTCGTTTTTATCTGCCTATTAGTGGCG
* * *
6882454 TTTTTACTAAAACGCCGTAAAAGGATATTCGTTAGTGACATTTTCAC-AAA
66 TTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCACAAAA
* *** * * * ** * *
6882504 AAACGCTATGAATATGTTTTAAGAGTTTACAAAATGCTGCCATTTTTATCTGCCTATTAGTGGCG
1 AAACACCGCGAATATGTATTAAGAGTGTGCAAAATATTGTCGTTTTTATCTGCCTATTAGTGGCG
6882569 CCACAAAAGG
Statistics
Matches: 248, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
114 78 0.31
115 102 0.41
116 28 0.11
117 40 0.16
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (116 bp):
AAACACCGCGAATATGTATTAAGAGTGTGCAAAATATTGTCGTTTTTATCTGCCTATTAGTGGCG
TTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCACAAAA
Found at i:6882537 original size:115 final size:115
Alignment explanation
Indices: 6882215--6882568 Score: 451
Period size: 115 Copynumber: 3.1 Consensus size: 115
6882205 AGCTTTGTTT
* * * * * * *
6882215 TTAGTGGCATTTTTACTAAAATGCCACAAAAGGATATCCATTAGTGGTGTTTTCACAAAAAAACA
1 TTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCAC-AAAAAACG
* * *
6882280 CCGCGAATATGTTTTAAGAGTGTGTAAAATGCTGTCGTTTTTATCTGCCTA
65 CTGTGAATATGTTTTAAGAGTGTGCAAAATGCTGTCGTTTTTATCTGCCTA
* *
6882331 TTAGTGGTGTTTTTACTAAAACGCTGCAAAA-GATATTCGTTAGTGGCGTTTTCACAAAAAACG-
1 TTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCACAAAAAACGC
* *** *
6882394 TCGTGAATATGTATTAAGAGTGTGCAAAAAATTTTCGTTTTTATCTGCCTA
66 T-GTGAATATGTTTTAAGAGTGTGCAAAATGCTGTCGTTTTTATCTGCCTA
* * *
6882445 TTAGTGGCGTTTTTACTAAAACGCCGTAAAAGGATATTCGTTAGTGACATTTTCACAAAAAACGC
1 TTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCACAAAAAACGC
* * * * *
6882510 TATGAATATGTTTTAAGAGTTTACAAAATGCTGCCATTTTTATCTGCCTA
66 TGTGAATATGTTTTAAGAGTGTGCAAAATGCTGTCGTTTTTATCTGCCTA
6882560 TTAGTGGCG
1 TTAGTGGCG
6882569 CCACAAAAGG
Statistics
Matches: 203, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
114 77 0.38
115 99 0.49
116 27 0.13
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (115 bp):
TTAGTGGCGTTTTTACTAAAACGCCGCAAAAGGATATTCGTTAGTGGCGTTTTCACAAAAAACGC
TGTGAATATGTTTTAAGAGTGTGCAAAATGCTGTCGTTTTTATCTGCCTA
Found at i:6882647 original size:101 final size:101
Alignment explanation
Indices: 6882472--6882669 Score: 254
Period size: 101 Copynumber: 2.0 Consensus size: 101
6882462 AAAACGCCGT
* * * * * *
6882472 AAAAGGATATTCGTTAGTGACATTTTCACAAAAAACGCTATGAATATGTTTTAAGAGTTTACAAA
1 AAAAGGATATCCGTTAGTGACATTTTCACAAAAAACGCCATCAAAATGTTTTAAGACTGTACAAA
*
6882537 ATGCTGCCATTTTTATCTGCCTATTAGTGGCGCCAC
66 ACGCTGCCATTTTTATCTGCCTATTAGTGGCGCCAC
* * * * *
6882573 AAAAGGATATCCTTTAGTGGCATTTTCACATAAAACTCCA-CAAAATGGTTTTAAGACTGTGCAA
1 AAAAGGATATCCGTTAGTGACATTTTCACAAAAAACGCCATCAAAAT-GTTTTAAGACTGTACAA
* *
6882637 AACGCTGCCATTTTTATCTGCTTTTTAGTGGCG
65 AACGCTGCCATTTTTATCTGCCTATTAGTGGCG
6882670 TTTTTACTAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
100 4 0.05
101 78 0.95
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (101 bp):
AAAAGGATATCCGTTAGTGACATTTTCACAAAAAACGCCATCAAAATGTTTTAAGACTGTACAAA
ACGCTGCCATTTTTATCTGCCTATTAGTGGCGCCAC
Found at i:6882864 original size:22 final size:23
Alignment explanation
Indices: 6882831--6882883 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
6882821 ACCAAATCAG
6882831 ATTTCCCCAATTT-TATTCCCCCA
1 ATTT-CCCAATTTCTATTCCCCCA
* *
6882854 ATTTCCCAATTTCTTTTCCCCTA
1 ATTTCCCAATTTCTATTCCCCCA
*
6882877 TTTTCCC
1 ATTTCCC
6882884 CAACGGCATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.17, C:0.38, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTCCCAATTTCTATTCCCCCA
Found at i:6883543 original size:17 final size:17
Alignment explanation
Indices: 6883521--6883558 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
6883511 GCCCCAGTAA
*
6883521 CTTGCAGCTTTTACTTC
1 CTTGCAGCCTTTACTTC
6883538 CTTGCAGCCTTTACTTC
1 CTTGCAGCCTTTACTTC
6883555 CTTG
1 CTTG
6883559 TGGACTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.32, G:0.13, T:0.45
Consensus pattern (17 bp):
CTTGCAGCCTTTACTTC
Found at i:6886922 original size:13 final size:13
Alignment explanation
Indices: 6886904--6886931 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6886894 ATATGTAGCA
6886904 TAGCTTCCCTACC
1 TAGCTTCCCTACC
6886917 TAGCTTCCCTACC
1 TAGCTTCCCTACC
6886930 TA
1 TA
6886932 TTATATCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.43, G:0.07, T:0.32
Consensus pattern (13 bp):
TAGCTTCCCTACC
Found at i:6887031 original size:9 final size:9
Alignment explanation
Indices: 6887019--6887147 Score: 100
Period size: 9 Copynumber: 14.3 Consensus size: 9
6887009 TATATCATAT
6887019 CATAACTTA
1 CATAACTTA
*
6887028 CATAATTTA
1 CATAACTTA
*
6887037 CATGACTTA
1 CATAACTTA
*
6887046 CATAA-ATA
1 CATAACTTA
* * *
6887054 TATATCATA
1 CATAACTTA
6887063 TCATAACTTA
1 -CATAACTTA
6887073 CATAACTTA
1 CATAACTTA
*
6887082 TATAACTTA
1 CATAACTTA
* *
6887091 TATAATTTA
1 CATAACTTA
*
6887100 CATAA-ATA
1 CATAACTTA
* * *
6887108 TATATCATA
1 CATAACTTA
6887117 TCATAACTTA
1 -CATAACTTA
6887127 CATAACTTA
1 CATAACTTA
*
6887136 CATAAATTA
1 CATAACTTA
6887145 CAT
1 CAT
6887148 GATTTAATTG
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
8 10 0.10
9 74 0.77
10 12 0.12
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:6887053 original size:45 final size:45
Alignment explanation
Indices: 6887004--6887147 Score: 180
Period size: 45 Copynumber: 3.0 Consensus size: 45
6886994 TGACAAAGCA
* *
6887004 AAATATATATCATATCATAACTTACATAATTTACATGACTTACAT
1 AAATATATATCATATCATAACTTACATAATTTACATAAATTACAT
6887049 AAATATATATCATATCATAACTTACATAACTTATATAACTTATATAATTTACAT
1 AAATATATATCATATCATAACTTACATAA--T-T-T-AC--ATA-AA-TTACAT
*
6887103 AAATATATATCATATCATAACTTACATAACTTACATAAATTACAT
1 AAATATATATCATATCATAACTTACATAATTTACATAAATTACAT
6887148 GATTTAATTG
Statistics
Matches: 87, Mismatches: 3, Indels: 18
0.81 0.03 0.17
Matches are distributed among these distances:
45 35 0.40
46 2 0.02
47 4 0.05
48 1 0.01
49 3 0.03
50 3 0.03
51 1 0.01
52 2 0.02
53 1 0.01
54 35 0.40
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.38
Consensus pattern (45 bp):
AAATATATATCATATCATAACTTACATAATTTACATAAATTACAT
Found at i:6887071 original size:27 final size:27
Alignment explanation
Indices: 6887041--6887131 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
6887031 AATTTACATG
6887041 ACTTACATAAATATATATCATATCATA
1 ACTTACATAAATATATATCATATCATA
* * *
6887068 ACTTACATAACTTATATAACTTAT-ATA
1 ACTTACATAA-ATATATATCATATCATA
*
6887095 ATTTACATAAATATATATCATATCATA
1 ACTTACATAAATATATATCATATCATA
6887122 ACTTACATAA
1 ACTTACATAA
6887132 CTTACATAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.19
27 34 0.63
28 10 0.19
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.38
Consensus pattern (27 bp):
ACTTACATAAATATATATCATATCATA
Found at i:6887153 original size:54 final size:54
Alignment explanation
Indices: 6887019--6887153 Score: 216
Period size: 54 Copynumber: 2.5 Consensus size: 54
6887009 TATATCATAT
* *
6887019 CATAACTTACATAATTTACATGACTTACATAAATATATATCATATCATAACTTA
1 CATAACTTACATAAATTACATGATTTACATAAATATATATCATATCATAACTTA
* * * *
6887073 CATAACTTATATAACTTATATAATTTACATAAATATATATCATATCATAACTTA
1 CATAACTTACATAAATTACATGATTTACATAAATATATATCATATCATAACTTA
6887127 CATAACTTACATAAATTACATGATTTA
1 CATAACTTACATAAATTACATGATTTA
6887154 ATTGAATTGA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.45, C:0.15, G:0.01, T:0.39
Consensus pattern (54 bp):
CATAACTTACATAAATTACATGATTTACATAAATATATATCATATCATAACTTA
Found at i:6893053 original size:19 final size:19
Alignment explanation
Indices: 6893012--6893054 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
6893002 TTTAGCTTCC
* ** *
6893012 AATTTTAATCCTTTTGTTT
1 AATTTTAACCCTTTTCATG
6893031 AATTTTAACCCTTTTCATG
1 AATTTTAACCCTTTTCATG
6893050 AATTT
1 AATTT
6893055 GTTTTATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.56
Consensus pattern (19 bp):
AATTTTAACCCTTTTCATG
Found at i:6893123 original size:21 final size:21
Alignment explanation
Indices: 6893097--6893142 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
6893087 TTTTTTTTAA
*
6893097 ATATATATAGTGTGTATTCAT-
1 ATATATATAGT-TATATTCATC
*
6893118 ATATATATTGTTATATTCATC
1 ATATATATAGTTATATTCATC
6893139 ATAT
1 ATAT
6893143 TTTTACTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.50
Consensus pattern (21 bp):
ATATATATAGTTATATTCATC
Found at i:6894330 original size:27 final size:26
Alignment explanation
Indices: 6894293--6894407 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
6894283 AGCATGGCTG
* *
6894293 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
6894319 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
6894347 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
6894374 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
6894401 CCAGAAC
1 CCAGAAC
6894408 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:6894352 original size:54 final size:54
Alignment explanation
Indices: 6894293--6894407 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
6894283 AGCATGGCTG
*
6894293 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
6894347 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
6894401 CCAGAAC
1 CCAGAAC
6894408 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:6896125 original size:26 final size:26
Alignment explanation
Indices: 6896025--6896134 Score: 154
Period size: 26 Copynumber: 4.2 Consensus size: 26
6896015 CATGAAATTC
*
6896025 TTATCATGAAACATTTACCTAATTCA
1 TTATCATGAAACATTTACCTAACTCA
6896051 TTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAACTCA
*
6896077 TTATCATGGAACATTTACCTAAC-CTA
1 TTATCATGAAACATTTACCTAACTC-A
6896103 TTATCATTG-AACATTTACCTAAC-CTA
1 TTATCA-TGAAACATTTACCTAACTC-A
6896129 TTATCA
1 TTATCA
6896135 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 1 0.01
26 77 0.96
27 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.37
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACTCA
Found at i:6896543 original size:3 final size:3
Alignment explanation
Indices: 6896528--6896853 Score: 153
Period size: 3 Copynumber: 108.7 Consensus size: 3
6896518 TAGGTGTATC
* *
6896528 TTA TTA CTA TTA TTA TTA CTA TTA CTT- TTA TTA TTTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA
* * * * *
6896574 TTG TTA CTT- TCTA TTA TTG TT- TT- TTA TTA TT- TATA CTA TTG TTG
1 TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * *
6896618 TTA TTA TTA TTA TT- TTA TTG TTA TTA TTA TTA TTT TCTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * *
6896663 TTA TTG TTA GTA -TA TTA TTA TTC TTA TTAA TGTA TTA TTA TTA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA
* * * * *
6896709 TCTA CT- TTA TTA TTA TTA CTA TTA TTA TCA TCA -TA TTA TTA -AA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
6896752 TTAA TTAA CT- TTA -TA TTA TTA TTA TTA -CA TTA TATA TT- TTC TT-
1 TT-A TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * * *
6896795 TTC GTA TTTA CTTA CGTCA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTG
1 TTA TTA -TTA -TTA --TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
6896843 TTA TTT TTA TT
1 TTA TTA TTA TT
6896854 CTTGTTCATT
Statistics
Matches: 248, Mismatches: 47, Indels: 56
0.71 0.13 0.16
Matches are distributed among these distances:
2 25 0.10
3 191 0.77
4 29 0.12
5 3 0.01
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:6896566 original size:28 final size:29
Alignment explanation
Indices: 6896535--6896591 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
6896525 ATCTTATTAC
6896535 TATTATTATTACTATTACTTT-TATTATT
1 TATTATTATTACTATTACTTTCTATTATT
* *
6896563 TATTATTATTATTGTTACTTTCTATTATT
1 TATTATTATTACTATTACTTTCTATTATT
6896592 GTTTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (29 bp):
TATTATTATTACTATTACTTTCTATTATT
Found at i:6896610 original size:29 final size:28
Alignment explanation
Indices: 6896535--6896690 Score: 108
Period size: 29 Copynumber: 5.5 Consensus size: 28
6896525 ATCTTATTAC
* *
6896535 TATTATTATTACTATTACTTTTATTATT
1 TATTATTATTATTGTTACTTTTATTATT
6896563 TATTATTATTATTGTTACTTTCTATTATT
1 TATTATTATTATTGTTACTTT-TATTATT
* * * *
6896592 GT-TTTTTATTATT-TATACTATTGTT-GT
1 -TATTATTATTATTGT-TACTTTTATTATT
6896619 TATTATTATTATT-TTA-TTGTTATTATTAT
1 TATTATTATTATTGTTACTT-TTATTA-T-T
* *
6896648 TATTTTCTATTATTGTTA-TTGTTAGTATAT
1 TATTAT-TATTATTGTTACTT-TTATTAT-T
*
6896678 TATTATTCTTATT
1 TATTATTATTATT
6896691 AATGTATTAT
Statistics
Matches: 104, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
25 1 0.01
26 7 0.07
27 12 0.12
28 23 0.22
29 34 0.33
30 16 0.15
31 11 0.11
ACGTcount: A:0.24, C:0.04, G:0.05, T:0.66
Consensus pattern (28 bp):
TATTATTATTATTGTTACTTTTATTATT
Found at i:6896735 original size:56 final size:54
Alignment explanation
Indices: 6896619--6896789 Score: 156
Period size: 56 Copynumber: 3.2 Consensus size: 54
6896609 CTATTGTTGT
* * * * *
6896619 TATTATTATTATTTTATTGTTATTATTATTATTTTCTATTATTGTTATTGTTAG
1 TATTATTATTATTTTATTATTATTATTATTATTTTCTACTATTATTATTATTAC
6896673 TA-TATTATTATTCTTATTAATGTATTATTATTATTTTCTACT-TTATTATTATTAC
1 TATTATTATTATT-TTATT-AT-TATTATTATTATTTTCTACTATTATTATTATTAC
* ** * **
6896728 TATTATTATCATCATATTATTA-AATTAATTAACTT-TA-TATTATTATTATTAC
1 TATTATTATTATTTTATTATTATTATT-ATTATTTTCTACTATTATTATTATTAC
6896780 -ATTATATATT
1 TATTAT-TATT
6896790 TTCTTTTCGT
Statistics
Matches: 98, Mismatches: 12, Indels: 16
0.78 0.10 0.13
Matches are distributed among these distances:
51 6 0.06
52 21 0.21
53 18 0.18
54 9 0.09
55 17 0.17
56 27 0.28
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (54 bp):
TATTATTATTATTTTATTATTATTATTATTATTTTCTACTATTATTATTATTAC
Found at i:6896758 original size:23 final size:23
Alignment explanation
Indices: 6896719--6896772 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
6896709 TCTACTTTAT
* *
6896719 TATTATTACTATTATTATCATCA
1 TATTATTACAATTATTAACATCA
* *
6896742 TATTATTA-AATTAATTAACTTTA
1 TATTATTACAATT-ATTAACATCA
6896765 TATTATTA
1 TATTATTA
6896773 TTATTACATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (23 bp):
TATTATTACAATTATTAACATCA
Found at i:6898280 original size:13 final size:14
Alignment explanation
Indices: 6898264--6898292 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6898254 TTTTAAATAT
6898264 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
6898277 TTATAATGGTTTAA
1 TTATAATGGTTTAA
6898291 TT
1 TT
6898293 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:6899136 original size:42 final size:43
Alignment explanation
Indices: 6899090--6899226 Score: 122
Period size: 43 Copynumber: 3.2 Consensus size: 43
6899080 AAAACATGAC
* ** *
6899090 CTTTAGCGGTATTT-T-TGTAAAAGCGTTGCTAAATGTCATGTT
1 CTTTAGCGGCATTTATATG-AAAAGCGCCGCTAAATGTCACGTT
*
6899132 CTTTAGCGGCATTTATATGAAAAGTGCCGCTAAATGTCACGTT
1 CTTTAGCGGCATTTATATGAAAAGCGCCGCTAAATGTCACGTT
* * *
6899175 CTTTAGCGTCGTTT-T-TGAGAAAG-GCACTGCTAAAAGTCACGTT
1 CTTTAGCGGCATTTATATGA-AAAGCGC-C-GCTAAATGTCACGTT
*
6899218 CTCTAGCGG
1 CTTTAGCGG
6899227 TGCTTTCTCA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
41 5 0.06
42 19 0.24
43 54 0.68
44 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (43 bp):
CTTTAGCGGCATTTATATGAAAAGCGCCGCTAAATGTCACGTT
Found at i:6899207 original size:43 final size:44
Alignment explanation
Indices: 6899116--6899226 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 44
6899106 GTAAAAGCGT
*
6899116 TGCTAAATGTCATGTTCTTTAGCGGCATTTATATGAAAAGTGCC
1 TGCTAAATGTCACGTTCTTTAGCGGCATTTATATGAAAAGTGCC
* *
6899160 -GCTAAATGTCACGTTCTTTAGCGTCGTTT-T-TGAGAAAG-GCAC
1 TGCTAAATGTCACGTTCTTTAGCGGCATTTATATGA-AAAGTGC-C
* *
6899202 TGCTAAAAGTCACGTTCTCTAGCGG
1 TGCTAAATGTCACGTTCTTTAGCGG
6899227 TGCTTTCTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
41 5 0.09
42 6 0.10
43 47 0.81
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (44 bp):
TGCTAAATGTCACGTTCTTTAGCGGCATTTATATGAAAAGTGCC
Found at i:6899786 original size:61 final size:58
Alignment explanation
Indices: 6899713--6899846 Score: 171
Period size: 61 Copynumber: 2.3 Consensus size: 58
6899703 TCCAAAAATA
* *
6899713 ATATTATTTTAATAGT-TTTAATATTAAATTTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAATA-TATTTAATATTAAATTTAATATAATATTTATCTT-T--ATAAATATT
* * * *
6899774 CTATTAATTTAATATATTTAATATTAGATTTAATATGATATTTATCTTTATAAGTATT
1 ATATTAATTTAATATATTTAATATTAAATTTAATATAATATTTATCTTTATAAATATT
6899832 ATATTAATTTAATAT
1 ATATTAATTTAATAT
6899847 TAAAGTGATT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
58 22 0.34
60 2 0.03
61 41 0.63
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (58 bp):
ATATTAATTTAATATATTTAATATTAAATTTAATATAATATTTATCTTTATAAATATT
Found at i:6899864 original size:58 final size:60
Alignment explanation
Indices: 6899713--6899865 Score: 147
Period size: 61 Copynumber: 2.6 Consensus size: 60
6899703 TCCAAAAATA
* * * *
6899713 ATATTATTTTAATAGT-TTTAATATTAAATTTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAATA-TATTAAATATTAAGTTTAATATAATATTTATCTTATA-ATAAATATT
* * * *
6899774 CTATTAATTTAATATATTTAATATT-AGATTTAATATGATATTTATCTT-T-ATAAGTATT
1 ATATTAATTTAATATATTAAATATTAAG-TTTAATATAATATTTATCTTATAATAAATATT
6899832 ATATTAATTT-A-ATATTAAAGTGATTAAGTTTAAT
1 ATATTAATTTAATATATTAAA-T-ATTAAGTTTAAT
6899866 CATAGTTAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
56 7 0.09
57 2 0.03
58 26 0.33
59 2 0.03
60 3 0.04
61 39 0.49
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (60 bp):
ATATTAATTTAATATATTAAATATTAAGTTTAATATAATATTTATCTTATAATAAATATT
Found at i:6899958 original size:14 final size:14
Alignment explanation
Indices: 6899939--6899973 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
6899929 GTTGAAGTAA
6899939 AGAGAAAGTTGTAG
1 AGAGAAAGTTGTAG
6899953 AGAGAAAGTTGTAG
1 AGAGAAAGTTGTAG
6899967 AGAGAAA
1 AGAGAAA
6899974 ATTCTCTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (14 bp):
AGAGAAAGTTGTAG
Found at i:6903602 original size:53 final size:53
Alignment explanation
Indices: 6903529--6903672 Score: 164
Period size: 53 Copynumber: 2.7 Consensus size: 53
6903519 CAATTTATAA
* *
6903529 GATACAATGCTGTCGGTCTTGAACAAAA-CTATTTAATTATGTTTTATTTGTAC
1 GATACAATGATGTCGGTCTTGAACAAAATC-ATTTAATTATGTATTATTTGTAC
* * * *
6903582 GATAGAATGATGTCGGTCTTGAATAAAATCGTTTAATTATGTATTATTTGTAA
1 GATACAATGATGTCGGTCTTGAACAAAATCATTTAATTATGTATTATTTGTAC
* * * * * *
6903635 GACACAATGTTGTTGGTATTAAACAAAATCGTTTAATT
1 GATACAATGATGTCGGTCTTGAACAAAATCATTTAATT
6903673 TTTTTTAGTA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 76 0.99
54 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (53 bp):
GATACAATGATGTCGGTCTTGAACAAAATCATTTAATTATGTATTATTTGTAC
Found at i:6904599 original size:94 final size:96
Alignment explanation
Indices: 6904473--6904678 Score: 251
Period size: 96 Copynumber: 2.2 Consensus size: 96
6904463 ATGGCGCTAT
*
6904473 TCTATATGACTCCACC-AAATAAAATATAAATTTTAAATTTAAATT-TAAAAAAACAC-ATTAAA
1 TCTATA-G-CTCCACCAAAATAAAATATAAATTTTAAATTTAAATTAAAAAAAAACACTATTAAA
* *
6904535 A-AAAGCTGACA-AATGACACTGGTGGTGCCATTC
64 AGAAA-CTAACACAATGA-ACTGGTGCTGCCATTC
* ** *
6904568 TCTATAGCTCCACCAAAATAAAATATTAATTTTATTTTTAAATTAAAAAAAAACACTTTTAAAAG
1 TCTATAGCTCCACCAAAATAAAATATAAATTTTAAATTTAAATTAAAAAAAAACACTATTAAAAG
* * *
6904633 AAACTAACACATTTAAGTGGTGCTGCCATTC
66 AAACTAACACAATGAACTGGTGCTGCCATTC
6904664 TCTATAGCTCCACCA
1 TCTATAGCTCCACCA
6904679 CCATTATTTA
Statistics
Matches: 96, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
93 7 0.07
94 27 0.28
95 16 0.17
96 40 0.42
97 6 0.06
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (96 bp):
TCTATAGCTCCACCAAAATAAAATATAAATTTTAAATTTAAATTAAAAAAAAACACTATTAAAAG
AAACTAACACAATGAACTGGTGCTGCCATTC
Done.