Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 235 of 332
Found at i:78031744 original size:31 final size:31
Alignment explanation
Indices: 78031706--78031769 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
78031696 AATACCTAAT
78031706 ATTCATAAGTACATGTTAGAGTGTGAATTTG
1 ATTCATAAGTACATGTTAGAGTGTGAATTTG
78031737 ATTCATAAGTACATGTTAGAGTGTGAATTTG
1 ATTCATAAGTACATGTTAGAGTGTGAATTTG
78031768 AT
1 AT
78031770 GTTGCTATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (31 bp):
ATTCATAAGTACATGTTAGAGTGTGAATTTG
Found at i:78033473 original size:29 final size:27
Alignment explanation
Indices: 78033455--78033524 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
78033445 ATATTAAGTC
78033455 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
78033482 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
78033510 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
78033525 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:78033518 original size:28 final size:28
Alignment explanation
Indices: 78033455--78033552 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
78033445 ATATTAAGTC
*
78033455 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
78033482 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78033510 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
78033539 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78033553 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78035899 original size:27 final size:27
Alignment explanation
Indices: 78035869--78036046 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78035859 ATATTAAGTC
* * *
78035869 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
78035896 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
78035924 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
78035951 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
78035978 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
78036005 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
78036032 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78036047 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:78035953 original size:55 final size:54
Alignment explanation
Indices: 78035869--78036046 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
78035859 ATATTAAGTC
* * *
78035869 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
78035924 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
78035978 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
78036032 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78036047 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:78036035 original size:81 final size:82
Alignment explanation
Indices: 78035890--78036045 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
78035880 TGCTATATAA
* *
78035890 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
78035955 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
78035972 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
78036035 ACACTTAGTGC
65 ACACTTAGTGC
78036046 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:78040641 original size:29 final size:27
Alignment explanation
Indices: 78040623--78040692 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
78040613 ATATTAAGTC
78040623 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
78040650 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
78040678 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
78040693 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:78040686 original size:28 final size:28
Alignment explanation
Indices: 78040623--78040720 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
78040613 ATATTAAGTC
*
78040623 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
78040650 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78040678 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
78040707 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78040721 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78042927 original size:93 final size:93
Alignment explanation
Indices: 78042768--78042938 Score: 234
Period size: 93 Copynumber: 1.8 Consensus size: 93
78042758 AGGATATTTG
* * ** *
78042768 GGCATCCGAGCTCGTTTAGGTGAGTCCGATTTCACTTATGGATGCGAATGTTCAAAATTGTTGAG
1 GGCATCCGAGCTCGTTGAGGTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAAATTCTTGAG
78042833 TTAAGTCCGAGTTCGTGAGATGTAACTA
66 TTAAGTCCGAGTTCGTGAGATGTAACTA
* * * * **
78042861 GGCATCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTTCTTGAG
1 GGCATCCGAGCTCGTTGAGGTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAAATTCTTGAG
*
78042926 TTGAGTCCGAGTT
66 TTAAGTCCGAGTT
78042939 TGCTTATGGG
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGGTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAAATTCTTGAG
TTAAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78057371 original size:34 final size:33
Alignment explanation
Indices: 78057298--78057372 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 33
78057288 CTGTACTAAA
* **
78057298 ATGGGCTAAGGCCCACACTGATTCTGTTACTGT
1 ATGGGCTAAGGCCCACACTGATACTGCGACTGT
*
78057331 ATTGGGCTAAGGCTCACACTGATACTGCGACTGAT
1 A-TGGGCTAAGGCCCACACTGATACTGCGACTG-T
78057366 ATGGGCT
1 ATGGGCT
78057373 TAAGCCAGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 1 0.03
34 33 0.92
35 2 0.06
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (33 bp):
ATGGGCTAAGGCCCACACTGATACTGCGACTGT
Found at i:78075322 original size:49 final size:48
Alignment explanation
Indices: 78075168--78075355 Score: 349
Period size: 48 Copynumber: 3.9 Consensus size: 48
78075158 TCATTTACAA
78075168 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCGGTAT
1 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCGGTAT
78075216 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCGGTAT
1 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCGGTAT
* *
78075264 AATGCACAATAAAACTCATGATCATAATTCATTCAATTCATTTCAGTAT
1 AATGCACAATAAAACTCATGATCATAATTCATTC-ATTCACTTCGGTAT
78075313 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTC
1 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTC
78075356 TTATCGAAGT
Statistics
Matches: 136, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
48 90 0.66
49 46 0.34
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.34
Consensus pattern (48 bp):
AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCGGTAT
Found at i:78075338 original size:97 final size:96
Alignment explanation
Indices: 78075168--78075355 Score: 349
Period size: 97 Copynumber: 1.9 Consensus size: 96
78075158 TCATTTACAA
*
78075168 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCGGTATAATGCACAATAAAACTC
1 AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCAGTATAATGCACAATAAAACTC
78075233 ATGATCATAATTCATTCATTCACTTCGGTAT
66 ATGATCATAATTCATTCATTCACTTCGGTAT
*
78075264 AATGCACAATAAAACTCATGATCATAATTCATTCAATTCATTTCAGTATAATGCACAATAAAACT
1 AATGCACAATAAAACTCATGATCATAATTCATTC-ATTCACTTCAGTATAATGCACAATAAAACT
78075329 CATGATCATAATTCATTCATTCACTTC
65 CATGATCATAATTCATTCATTCACTTC
78075356 TTATCGAAGT
Statistics
Matches: 89, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
96 34 0.38
97 55 0.62
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.34
Consensus pattern (96 bp):
AATGCACAATAAAACTCATGATCATAATTCATTCATTCACTTCAGTATAATGCACAATAAAACTC
ATGATCATAATTCATTCATTCACTTCGGTAT
Found at i:78075696 original size:48 final size:48
Alignment explanation
Indices: 78075524--78075706 Score: 139
Period size: 48 Copynumber: 3.9 Consensus size: 48
78075514 CACGTAATAA
* * *
78075524 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCATAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * *** * *
78075572 GAAGCCAA----AAG-CCCAG-CTATGGTCTTACACAATG-TCTCATATA
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACA-TGGGATCACATATC
* * * *
78075615 GATGTCAATGCCATATCCCAGATC-TAGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGA-CATGGTCTTACATGGGATCACATATC
* *
78075663 GATGCCAATGCCATGTCCCTGACATGGTCTTACATGGAATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
78075707 CATAACCCTA
Statistics
Matches: 97, Mismatches: 27, Indels: 22
0.66 0.18 0.15
Matches are distributed among these distances:
43 27 0.28
44 3 0.03
47 3 0.03
48 63 0.65
50 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:78081252 original size:43 final size:43
Alignment explanation
Indices: 78081204--78081288 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
78081194 TGACGTATGT
*
78081204 AGCATCCGAGCTCATTGAGAGGTCCAAGTTCATTATGGATGCG
1 AGCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCG
* * **
78081247 AGCATCTGAGCTCGTTGAGAGGTCTGAGTTCATGATGGATGC
1 AGCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGC
78081289 TATTCATGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
AGCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCG
Found at i:78084682 original size:43 final size:43
Alignment explanation
Indices: 78084621--78084763 Score: 259
Period size: 43 Copynumber: 3.3 Consensus size: 43
78084611 TTATTCGGGC
*
78084621 CTTCGAGCCTAGCAGGCTATAATGTCGGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
78084664 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
* *
78084707 CTTCAAGCCTAGCAAGCTATAATGCCGGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
78084750 CTTCGAGCCTAGCA
1 CTTCGAGCCTAGCA
78084764 CACGTAATGC
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 96 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
Found at i:78092402 original size:43 final size:43
Alignment explanation
Indices: 78092295--78092442 Score: 235
Period size: 43 Copynumber: 3.4 Consensus size: 43
78092285 ACGGTACTAT
*
78092295 TCGGGCCTTCGAGCCTAGCAGGCTATAATTCCGGTGAGTTAATA
1 TCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
*
78092339 TC-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
**
78092381 TCGGGCTTCGAGCCTAGCAGGCTATAATGTAGGTGAGTTAATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
*
78092424 TCAGGCTTCGAGCCTAGCA
1 TCGGGCTTCGAGCCTAGCA
78092443 CACGTAATGC
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
42 38 0.39
43 57 0.59
44 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (43 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
Found at i:78092451 original size:85 final size:86
Alignment explanation
Indices: 78092295--78092458 Score: 244
Period size: 85 Copynumber: 1.9 Consensus size: 86
78092285 ACGGTACTAT
* * **
78092295 TCGGGCCTTCGAGCCTAGCAGGCTATAATTCCGGTGAGTTAATATCGGCTTTGAGCCTAGCAGGC
1 TCGGGCCTTCGAGCCTAGCAGGCTATAATTCAGGTGAGTTAATATCGGCTTCGAGCCTAGCACAC
78092360 TATAATGCCGGTGAGTTAATA
66 TATAATGCCGGTGAGTTAATA
78092381 TCGGG-CTTCGAGCCTAGCAGGCTATAATGT-AGGTGAGTTAATATCAGGCTTCGAGCCTAGCAC
1 TCGGGCCTTCGAGCCTAGCAGGCTATAAT-TCAGGTGAGTTAATATC-GGCTTCGAGCCTAGCAC
*
78092444 AC-GTAATGCCGGTGA
64 ACTATAATGCCGGTGA
78092459 ATGAGTTCAG
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
85 49 0.69
86 22 0.31
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (86 bp):
TCGGGCCTTCGAGCCTAGCAGGCTATAATTCAGGTGAGTTAATATCGGCTTCGAGCCTAGCACAC
TATAATGCCGGTGAGTTAATA
Found at i:78094510 original size:42 final size:42
Alignment explanation
Indices: 78094405--78094511 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
78094395 GTGTTAGTGT
* * * *
78094405 CATATCTCGGATATGGTCTTACATGAAATATCATATCGACAC
1 CATATCCCAGATATGGTCTTATACGAAATATCATATCGACAC
* * **
78094447 CATATCCCTGACATGGTCTTATACGAAATCAT-ATATCGATGC
1 CATATCCCAGATATGGTCTTATACGAAAT-ATCATATCGACAC
78094489 CATATCCCAGATATGGTCTTATA
1 CATATCCCAGATATGGTCTTATA
78094512 TGGAATCTCG
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 53 0.96
43 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTATACGAAATATCATATCGACAC
Found at i:78103700 original size:19 final size:19
Alignment explanation
Indices: 78103676--78103714 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
78103666 GTGGATTAAT
*
78103676 TTTGAATACATATAGATCC
1 TTTGAATACAAATAGATCC
*
78103695 TTTGAATAGAAATAGATCC
1 TTTGAATACAAATAGATCC
78103714 T
1 T
78103715 GAAAGAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (19 bp):
TTTGAATACAAATAGATCC
Found at i:78104070 original size:43 final size:43
Alignment explanation
Indices: 78103981--78104080 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
78103971 CCGAGATGTG
* * ** * *
78103981 ATTACATGTAAGACCATGTTTAGGACATTGGCATTGTATTGTA
1 ATTACGTGTAAGACAATGTTTAGGACATTGGCAACGTAATGCA
*
78104024 ATTACGTGTAAGACAATGTTTGGGACATTGGCAACGTTAAT-CA
1 ATTACGTGTAAGACAATGTTTAGGACATTGGCAACG-TAATGCA
*
78104067 ATTAAGTGTAAGAC
1 ATTACGTGTAAGAC
78104081 CCAGTCTGGG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 45 0.94
44 3 0.06
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (43 bp):
ATTACGTGTAAGACAATGTTTAGGACATTGGCAACGTAATGCA
Found at i:78120501 original size:18 final size:18
Alignment explanation
Indices: 78120480--78120514 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
78120470 AAACATTATC
78120480 AGAACTAGAATCAAAATG
1 AGAACTAGAATCAAAATG
*
78120498 AGAATTAGAATCAAAAT
1 AGAACTAGAATCAAAAT
78120515 TAGGTGACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.09, G:0.14, T:0.20
Consensus pattern (18 bp):
AGAACTAGAATCAAAATG
Found at i:78120768 original size:27 final size:26
Alignment explanation
Indices: 78120682--78120789 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
78120672 AGCATAGCTG
* ** *
78120682 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAATAGATATTGTGGCAGAGCCA
*
78120708 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ATAGATATTGTGGCAGAGCCA
*
78120735 CCAGAATAGATATTTGTGGCATAGCCA
1 CCAGAATAGATA-TTGTGGCAGAGCCA
* * *
78120762 CCAGAATCAAATAATGTGGCAAAGCCA
1 CCAGAAT-AGATATTGTGGCAGAGCCA
78120789 C
1 C
78120790 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 11 0.15
27 56 0.79
28 4 0.06
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAATAGATATTGTGGCAGAGCCA
Found at i:78121409 original size:27 final size:27
Alignment explanation
Indices: 78121379--78121976 Score: 734
Period size: 27 Copynumber: 22.2 Consensus size: 27
78121369 GTGTATCTCG
*
78121379 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121406 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121433 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121460 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121487 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121514 GTAATTCTACCCTACAGGTGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121541 GTAATTCTACCCTACAGGTGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
78121568 GTAATTCTACCTTATAGGGGTACTT-A
1 GTAATTCTACCCTACAGGGGTATTTCA
**
78121594 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
78121621 GTATTTCTACCCTACAAGGGCATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
78121648 GTATTTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
78121675 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
78121702 ATAATTCTACTTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121729 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121756 GTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
78121783 GTAGTTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
78121809 GATAATTCTACTGTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
78121837 GTAATTCTACCCTACAGAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
78121864 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
78121891 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
78121917 GATATTTCTACCTTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
78121945 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
78121972 ATAAT
1 GTAAT
78121977 ATTGTAAATC
Statistics
Matches: 500, Mismatches: 66, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.05
27 474 0.95
28 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:78121992 original size:27 final size:26
Alignment explanation
Indices: 78121962--78122485 Score: 269
Period size: 27 Copynumber: 19.7 Consensus size: 26
78121952 TACCCTACAG
* *
78121962 GGGTATTTCAATAATATTGTAAATCGA
1 GGGTATTTCAGTAAT-TTATAAATCGA
** * *
78121989 GGGTAAAAT-GGTAATTCTATAAATCGG
1 GGGT-ATTTCAGTAATT-TATAAATCGA
*
78122016 GGGTACTTTGA-TAATTT-TACAAGTCGA
1 GGGTA-TTTCAGTAATTTATA-AA-TCGA
*
78122043 -GGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAA-TTTATAAATCGA
*
78122069 GGGTATTTCAATAATTT-TGCAAA-CTGA
1 GGGTATTTCAGTAATTTAT--AAATC-GA
** * *
78122096 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTCAGTAA-TTTATAAATCGA
78122123 GGGTATTTCAGTAATTT-TACAATCGA
1 GGGTATTTCAGTAATTTATA-AATCGA
* *
78122149 CGGTATTTCAGTAATTTTATAAA-CCA
1 GGGTATTTCAGTAA-TTTATAAATCGA
*
78122175 GGGTACTTT-GGTAATTT-TACAAGTCGA
1 GGGTA-TTTCAGTAATTTATA-AA-TCGA
* * * *
78122202 AGGTATTTCAGTAATTTTACAAATTGG
1 GGGTATTTCAGTAA-TTTATAAATCGA
78122229 GGGTATTTCAGTAATTT-TACAATCGA
1 GGGTATTTCAGTAATTTATA-AATCGA
* * *
78122255 CGGTATTTCGGTAATTTTATAAA-CTGG
1 GGGTATTTCAGTAA-TTTATAAATC-GA
*
78122282 GGGTACTTT-GGTAATTT-TACAAGTCGA
1 GGGTA-TTTCAGTAATTTATA-AA-TCGA
* * *
78122309 GGGTATTTTAGTAATTTTACAAATCAA
1 GGGTATTTCAGTAA-TTTATAAATCGA
* *
78122336 GGGTATTTCAGTAATTT-TGCAAGCTGA
1 GGGTATTTCAGTAATTTAT-AAATC-GA
* *
78122363 GGGTATTTCGGTAATTTTACAAAAT-GA
1 GGGTATTTCAGTAA-TTTA-TAAATCGA
*
78122390 GGGTATTTTAGTAATTT-TACAATCGA
1 GGGTATTTCAGTAATTTATA-AATCGA
* * * *
78122416 CGGTATTTCGGTAATTTTATAAACCGG
1 GGGTATTTCAGTAA-TTTATAAATCGA
*
78122443 GGGTACTTT-AGTAATTT-TACAA-CTA
1 GGGTA-TTTCAGTAATTTATA-AATCGA
*
78122468 GGGGTATTTTAGTAATTT
1 -GGGTATTTCAGTAATTT
78122486 TAGTAAACTA
Statistics
Matches: 381, Mismatches: 66, Indels: 101
0.70 0.12 0.18
Matches are distributed among these distances:
24 3 0.01
25 24 0.06
26 122 0.32
27 196 0.51
28 32 0.08
29 4 0.01
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTATAAATCGA
Found at i:78122073 original size:53 final size:53
Alignment explanation
Indices: 78121999--78122487 Score: 483
Period size: 53 Copynumber: 9.2 Consensus size: 53
78121989 GGGTAAAATG
* * * *
78121999 GTAATTCTATAAATCGGGGGTACTTTGA-TAATTTTACAAGTCGA-GGTATTTCA
1 GTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-TCGACGGTATTTCA
* * * * **
78122052 GTAATTTTACAAATCGAGGGTATTTCAATAATTTTGCAAACTGAGGGTATTTTG
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATC-GACGGTATTTCA
*
78122106 GTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
* * * *
78122159 GTAATTTTATAAA-CCAGGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAA-TCGACGGTATTTCA
* * *
78122212 GTAATTTTACAAATTGGGGGTATTTCAGTAATTTTACAATCGACGGTATTTCG
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
* * * * *
78122265 GTAATTTTATAAA-CTGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTA
1 GTAATTTTACAAATC-GAGGGTA-TTTCAGTAATTTTACAA-TCGACGGTATTTCA
* * * * *
78122319 GTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAGCTGAGGGTATTTCG
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATC-GACGGTATTTCA
* *
78122373 GTAATTTTACAAAAT-GAGGGTATTTTAGTAATTTTACAATCGACGGTATTTCG
1 GTAATTTTAC-AAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
* * * * * *
78122426 GTAATTTTATAAACCGGGGGTACTTT-AGTAATTTTACAA-CTAGGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAATCGA-CGGTATTTCA
78122479 GTAATTTTA
1 GTAATTTTA
78122488 GTAAACTAAA
Statistics
Matches: 366, Mismatches: 53, Indels: 34
0.81 0.12 0.08
Matches are distributed among these distances:
52 28 0.08
53 185 0.51
54 148 0.40
55 5 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
Found at i:78122073 original size:80 final size:79
Alignment explanation
Indices: 78121999--78122493 Score: 432
Period size: 80 Copynumber: 6.2 Consensus size: 79
78121989 GGGTAAAATG
* * *
78121999 GTAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGTATTTCAGTAATTTTACAA
1 GTAATTTTATAAA-CGAGGGTACTTTGGTAATTTTACAAGTCGAGGTATTTCAGTAATTTTACAA
78122064 ATCGAGGGTATTTCA
65 ATCGAGGGTATTTCA
* ** * * *
78122079 ATAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC-
1 GTAATTTTATAAAC-GAGGGTACTTTGGTAATTTTACAAGTCGA-GGTATTTCAGTAATTTTACA
*
78122143 AATCGACGGTATTTCA
64 AATCGAGGGTATTTCA
*
78122159 GTAATTTTATAAACCAGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAA
1 GTAATTTTATAAACGAGGGTACTTTGGTAATTTTACAAGTCG-AGGTATTTCAGTAATTTTACAA
* *
78122224 ATTGGGGGTATTTCA
65 ATCGAGGGTATTTCA
* * * * * * * *
78122239 GTAATTTTACAATCGACGGTA-TTTCGGTAATTTTATAAACTGGGGGTACTTT-GGTAATTTTAC
1 GTAATTTTATAAACGAGGGTACTTT-GGTAATTTTA-CAAGTCGAGGTA-TTTCAGTAATTTTAC
* *
78122302 AAGTCGAGGGTATTTTA
63 AAATCGAGGGTATTTCA
* * * * *
78122319 GTAATTTTACAAATCAAGGGTA-TTTCAGTAATTTTGCAAG-CTGAGGGTATTTCGGTAATTTTA
1 GTAATTTTATAAA-CGAGGGTACTTT-GGTAATTTTACAAGTC-GA-GGTATTTCAGTAATTTTA
*
78122382 CAAAAT-GAGGGTATTTTA
62 C-AAATCGAGGGTATTTCA
* * * * ** *
78122400 GTAATTTTACAATCGACGGTA-TTTCGGTAATTTTATAAACCGGGGGTACTTT-AGTAATTTTAC
1 GTAATTTTATAAACGAGGGTACTTT-GGTAATTTTACAAGTC-GAGGTA-TTTCAGTAATTTTAC
* * *
78122463 AACTAG-GGGTATTTTA
63 AAATCGAGGGTATTTCA
78122479 GTAATTTTAGTAAAC
1 GTAATTTTA-TAAAC
78122494 TAAAGTATTC
Statistics
Matches: 343, Mismatches: 56, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
79 69 0.20
80 183 0.53
81 88 0.26
82 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (79 bp):
GTAATTTTATAAACGAGGGTACTTTGGTAATTTTACAAGTCGAGGTATTTCAGTAATTTTACAAA
TCGAGGGTATTTCA
Found at i:78122077 original size:107 final size:104
Alignment explanation
Indices: 78121983--78122487 Score: 491
Period size: 107 Copynumber: 4.8 Consensus size: 104
78121973 TAATATTGTA
** * * *
78121983 AATCGAGGGTAAAATGGTAATTCTATAAATCGGGGGTACTTTGA-TAATTTTACAAGTCGA-GGT
1 AATCGAGGGTAATTTGGTAATTTTACAAATCGGGGGTA-TTTCAGTAATTTTACAA-TCGACGGT
* *
78122046 ATTTCAGTAATTTTACAAATCGAGGGTATTTCAATAATTTTGC
64 ATTTCAGTAATTTTACAAA-CGAGGGTATTT-AGTAATTTTAC
* * * *
78122089 AAACTGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGACGGTA
1 AATC-GAGGGTAATTTGGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAATCGACGGTA
* * *
78122154 TTTCAGTAATTTTATAAACCAGGGTACTTTGGTAATTTTAC
65 TTTCAGTAATTTTACAAACGAGGGTA-TTTAGTAATTTTAC
* * *
78122195 AAGTCGAAGGT-ATTTCAGTAATTTTACAAATTGGGGGTATTTCAGTAATTTTACAATCGACGGT
1 AA-TCGAGGGTAATTT-GGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAATCGACGGT
* * * *
78122259 ATTTCGGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTAC
64 ATTTCAGTAATTTTACAAAC-GAGGGTA-TTTAGTAATTTTAC
* * ** * * *
78122302 AAGTCGAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAGCTGAGGGT
1 AA-TCGAGGGTAATTTGGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAATC-GACGGT
* *
78122367 ATTTCGGTAATTTTACAAAATGAGGGTATTTTAGTAATTTTAC
64 ATTTCAGTAATTTTAC-AAACGAGGGTA-TTTAGTAATTTTAC
* * * * *
78122410 AATCGACGGT-ATTTCGGTAATTTTATAAACCGGGGGTACTTT-AGTAATTTTACAA-CTAGGGG
1 AATCGAGGGTAATTT-GGTAATTTTACAAATCGGGGGTA-TTTCAGTAATTTTACAATCGA-CGG
*
78122472 TATTTTAGTAATTTTA
63 TATTTCAGTAATTTTA
78122488 GTAAACTAAA
Statistics
Matches: 340, Mismatches: 46, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
105 4 0.01
106 119 0.35
107 167 0.49
108 47 0.14
109 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (104 bp):
AATCGAGGGTAATTTGGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAATCGACGGTAT
TTCAGTAATTTTACAAACGAGGGTATTTAGTAATTTTAC
Found at i:78126211 original size:29 final size:29
Alignment explanation
Indices: 78126169--78126226 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
78126159 GAGAGATAGG
78126169 AAGGCTCAAGAGTTTGGTAAAAGAAGTTT
1 AAGGCTCAAGAGTTTGGTAAAAGAAGTTT
**
78126198 AAGGCTCGGGAGTTTGGTAAAAGAAGTTT
1 AAGGCTCAAGAGTTTGGTAAAAGAAGTTT
78126227 TTCTAAGTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.28
Consensus pattern (29 bp):
AAGGCTCAAGAGTTTGGTAAAAGAAGTTT
Found at i:78135109 original size:37 final size:37
Alignment explanation
Indices: 78135045--78135190 Score: 202
Period size: 37 Copynumber: 3.9 Consensus size: 37
78135035 AGCTCAGACG
* * *
78135045 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
78135082 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
78135119 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
78135156 TAATCTCCACACGTAGTCATCAGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
78135191 ATATATTACC
Statistics
Matches: 97, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:78135388 original size:28 final size:28
Alignment explanation
Indices: 78135355--78135409 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
78135345 TCACACTAGC
* *
78135355 CATTCGGCTTTACCACATATATGCATGG
1 CATTCGGCCTTACCACACATATGCATGG
*
78135383 CATTCGGCCTTATCACACATATGCATG
1 CATTCGGCCTTACCACACATATGCATG
78135410 CTCACTTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (28 bp):
CATTCGGCCTTACCACACATATGCATGG
Found at i:78135484 original size:47 final size:47
Alignment explanation
Indices: 78135383--78135518 Score: 220
Period size: 47 Copynumber: 2.9 Consensus size: 47
78135373 ATATGCATGG
* * *
78135383 CATTCGGCCTTATCACACATATGCATGCTCAC-TTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGC
78135429 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGC
* *
78135476 CATTCGGCCTTACCACATATATGCATGTTCTCATTCATCACAT
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
78135519 TAAAATCCTA
Statistics
Matches: 84, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 30 0.36
47 54 0.64
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGC
Found at i:78137592 original size:57 final size:59
Alignment explanation
Indices: 78137507--78137640 Score: 220
Period size: 57 Copynumber: 2.3 Consensus size: 59
78137497 TCCTCAAAGC
78137507 TCTTT-TTCCTTCTTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGC-TTTTTTT
1 TCTTTCTT-CTTC-TTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTT
78137566 TC-TTCTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTT
1 TCTTTCTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTT
*
78137624 TCTTTCTTTTTCTTTTT
1 TCTTTCTTCTTCTTTTT
78137641 TTTATCATCA
Statistics
Matches: 71, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
57 39 0.55
58 15 0.21
59 17 0.24
ACGTcount: A:0.15, C:0.22, G:0.09, T:0.54
Consensus pattern (59 bp):
TCTTTCTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTT
Found at i:78138518 original size:12 final size:12
Alignment explanation
Indices: 78138501--78138530 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
78138491 AAATGGTTTT
78138501 AATTTGGACACA
1 AATTTGGACACA
78138513 AATTTGGACACA
1 AATTTGGACACA
78138525 AATTTG
1 AATTTG
78138531 TGACTCAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (12 bp):
AATTTGGACACA
Found at i:78159972 original size:14 final size:14
Alignment explanation
Indices: 78159953--78159982 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78159943 TCCACGTTGC
*
78159953 TTCCTTTTTTCTTT
1 TTCCTTTCTTCTTT
78159967 TTCCTTTCTTCTTT
1 TTCCTTTCTTCTTT
78159981 TT
1 TT
78159983 TGGGACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (14 bp):
TTCCTTTCTTCTTT
Found at i:78164242 original size:42 final size:42
Alignment explanation
Indices: 78164147--78164259 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 42
78164137 ATACCTTATC
* *
78164147 CCAGATATGGTCTTACATGAAATCTCGTATCGATGCCAATAGT
1 CCAGATATGGTCTTACACGAAATCTCATATCGATGCCAATA-T
* * *
78164190 CCAGCTATGGTCTTACACGAAGTCTTATATCGATG-CAATAT
1 CCAGATATGGTCTTACACGAAATCTCATATCGATGCCAATAT
78164231 CCTAGATATGGTCTTACACGTAAATCTCA
1 CC-AGATATGGTCTTACACG-AAATCTCA
78164260 GTAGCCCTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 3 0.05
42 21 0.35
43 36 0.60
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (42 bp):
CCAGATATGGTCTTACACGAAATCTCATATCGATGCCAATAT
Found at i:78165089 original size:12 final size:13
Alignment explanation
Indices: 78165072--78165100 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
78165062 AGATGGAAAA
78165072 AATTTGGC-TTTT
1 AATTTGGCTTTTT
78165084 AATTTGGCTTTTT
1 AATTTGGCTTTTT
78165097 AATT
1 AATT
78165101 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:78175176 original size:27 final size:27
Alignment explanation
Indices: 78175139--78175343 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
78175129 TAAATTGTAC
*
78175139 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78175166 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
78175193 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78175219 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
78175247 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78175274 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
78175302 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78175329 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78175344 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78175200 original size:54 final size:54
Alignment explanation
Indices: 78175140--78175343 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
78175130 AAATTGTACA
* * *
78175140 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
78175194 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
78175248 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
78175303 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
78175344 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:78183289 original size:27 final size:27
Alignment explanation
Indices: 78183252--78183456 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
78183242 TAAATTGTAC
*
78183252 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78183279 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
78183306 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78183332 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
78183360 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78183387 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
78183415 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78183442 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78183457 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78183313 original size:54 final size:54
Alignment explanation
Indices: 78183253--78183456 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
78183243 AAATTGTACA
* * *
78183253 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
78183307 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
78183361 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
78183416 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
78183457 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:78187248 original size:94 final size:90
Alignment explanation
Indices: 78187125--78187337 Score: 252
Period size: 94 Copynumber: 2.3 Consensus size: 90
78187115 TTGGCGTGCC
* *
78187125 AGTGTAAGACATGTCTGGGACATGTATCGG-C-CGCATTATGATAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGTCTCG-A-GATGATAGCCAGTGTAAGA-CATGTCT
78187188 GGGACATGGCATCGGCATTGA-GACAAGGGCT
63 GGGACAT-GCATCGGC--T-ACGACAAGGGCT
* * *
78187219 AGTGTAAGACATGTTTGGGACATGCATCGGTCTCGAGATGTTAGCCAGTGTCAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGTCTCGAGATGATAGCCAGTGTAAGACATGTCTGGG
* * * * *
78187284 ACATGCATTGGCTACGAGATGTGTT
66 ACATGCATCGGCTACGACAAGGGCT
78187309 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
78187338 ACACAGTTAC
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
89 1 0.01
90 35 0.33
92 7 0.07
93 14 0.13
94 44 0.42
95 2 0.02
96 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (90 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGTCTCGAGATGATAGCCAGTGTAAGACATGTCTGGG
ACATGCATCGGCTACGACAAGGGCT
Found at i:78187328 original size:44 final size:46
Alignment explanation
Indices: 78187125--78187337 Score: 195
Period size: 46 Copynumber: 4.6 Consensus size: 46
78187115 TTGGCGTGCC
* * * *
78187125 AGTGTAAGACATGTCTGGGACATGTATCGG-C-CGCATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGTCTCG-A-GATGTTAGCT
* *****
78187171 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGTC-TCGAGATGTTAGCT
* *
78187219 AGTGTAAGACATGTTTGGGACATGCATCGGTCTCGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGTCTCGAGATGTTAGCT
* * *
78187265 AGTGTCAGACATGTCTGGGACATGCATTGG-CTACGAGATG-T-GTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGTCT-CGAGATGTTAGCT
78187309 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
78187338 ACACAGTTAC
Statistics
Matches: 138, Mismatches: 23, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
44 28 0.20
45 3 0.02
46 57 0.41
47 28 0.20
48 20 0.14
49 1 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGTCTCGAGATGTTAGCT
Found at i:78187372 original size:46 final size:47
Alignment explanation
Indices: 78187302--78187390 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 47
78187292 TGGCTACGAG
* * *
78187302 ATGTGTTAGTGTAAGACATGTCTGGGACA-TGCATCGACACAGTTAC
1 ATGTGTCAGTGTAAGACATATCTGGGACACGGCATCGACACAGTTAC
* *
78187348 ATGTGTCAGTGTAAGACCTATCTGGGATACGGCATCGACACAG
1 ATGTGTCAGTGTAAGACATATCTGGGACACGGCATCGACACAG
78187391 ATGGACGAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 25 0.68
47 12 0.32
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGTCAGTGTAAGACATATCTGGGACACGGCATCGACACAGTTAC
Found at i:78196869 original size:19 final size:17
Alignment explanation
Indices: 78196837--78196879 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
78196827 CTACTTGTGC
*
78196837 ATTTATGTTTTGAACTTG
1 ATTTATGTTATGAA-TTG
78196855 ATTTGATGTTATGAATTG
1 ATTT-ATGTTATGAATTG
*
78196873 AATTATG
1 ATTTATG
78196880 ATAATACCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (17 bp):
ATTTATGTTATGAATTG
Found at i:78204444 original size:19 final size:17
Alignment explanation
Indices: 78204412--78204454 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
78204402 CTACTTGTGC
*
78204412 ATTTATGTTTTGAACTTG
1 ATTTATGTTATGAA-TTG
78204430 ATTTGATGTTATGAATTG
1 ATTT-ATGTTATGAATTG
*
78204448 AATTATG
1 ATTTATG
78204455 ATAATACCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 10 0.45
19 9 0.41
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (17 bp):
ATTTATGTTATGAATTG
Found at i:78221007 original size:2 final size:2
Alignment explanation
Indices: 78221000--78221028 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
78220990 CATTGCCTTG
78221000 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78221029 ATGTCCTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78224018 original size:54 final size:54
Alignment explanation
Indices: 78223932--78224039 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
78223922 TATTAATGAG
*
78223932 TCTGTCTTCAAGAGAAACAAACAAAAACATCATTTGAATCCCGTACTAAGAGAT
1 TCTGTCTTCAAGAGAAACAAACAAAAACATCATCTGAATCCCGTACTAAGAGAT
*
78223986 TCTGTCTTCAAGAGAAACAAACAAAAATATCATCTGAATCCCGTACTAAGAGAT
1 TCTGTCTTCAAGAGAAACAAACAAAAACATCATCTGAATCCCGTACTAAGAGAT
78224040 AATTAATTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.24
Consensus pattern (54 bp):
TCTGTCTTCAAGAGAAACAAACAAAAACATCATCTGAATCCCGTACTAAGAGAT
Found at i:78224874 original size:3 final size:3
Alignment explanation
Indices: 78224860--78224914 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
78224850 TATATGTTAT
* * * *
78224860 TAA TAA TTA TAA TAA TAA TAA GTAA AAA GAA TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
*
78224906 TTA TAA TAA
1 TAA TAA TAA
78224915 CATTATCATC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:78225521 original size:36 final size:36
Alignment explanation
Indices: 78225480--78225554 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
78225470 ATACGAAGGA
*
78225480 AAAAAAATAAAAAATTGTAAAATAGTCCCAACGAAC
1 AAAAAAAGAAAAAATTGTAAAATAGTCCCAACGAAC
* *
78225516 AAAAAAAGAGAAAATTGTAAAATAGTCCCAATGAAC
1 AAAAAAAGAAAAAATTGTAAAATAGTCCCAACGAAC
78225552 AAA
1 AAA
78225555 TTTGCTTACT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.61, C:0.12, G:0.11, T:0.16
Consensus pattern (36 bp):
AAAAAAAGAAAAAATTGTAAAATAGTCCCAACGAAC
Found at i:78225972 original size:20 final size:20
Alignment explanation
Indices: 78225926--78225975 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
78225916 TGCACATATG
* * *
78225926 TGCCTCTATTGGCACTTTGG
1 TGCCTCTGTTTGCACTTTGA
78225946 TGCCTCTGTTTGCACTTTGA
1 TGCCTCTGTTTGCACTTTGA
*
78225966 TGTCTCTGTT
1 TGCCTCTGTT
78225976 AGCATTGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.08, C:0.24, G:0.22, T:0.46
Consensus pattern (20 bp):
TGCCTCTGTTTGCACTTTGA
Found at i:78227270 original size:26 final size:26
Alignment explanation
Indices: 78227241--78227291 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
78227231 AAATTACAAG
*
78227241 TTATTAGCAATTAATATTAATTAATA
1 TTATTAGCAATTAATATTAAGTAATA
* **
78227267 TTATTTGTTATTAATATTAAGTAAT
1 TTATTAGCAATTAATATTAAGTAAT
78227292 TAATAATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (26 bp):
TTATTAGCAATTAATATTAAGTAATA
Found at i:78227314 original size:14 final size:14
Alignment explanation
Indices: 78227290--78227330 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
78227280 ATATTAAGTA
78227290 ATTAATAATATTTAT
1 ATTAAT-ATATTTAT
*
78227305 ATTATTATATTTAT
1 ATTAATATATTTAT
78227319 ATTAATATATTT
1 ATTAATATATTT
78227331 CGATTTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTAATATATTTAT
Found at i:78227372 original size:15 final size:15
Alignment explanation
Indices: 78227354--78227487 Score: 50
Period size: 15 Copynumber: 8.6 Consensus size: 15
78227344 TATATTTCTA
78227354 TATTATTTATTTTAT
1 TATTATTTATTTTAT
*
78227369 TATTCTATCTA-TTT-T
1 TA-T-TATTTATTTTAT
*
78227384 TATTATTCTA-TCTAT
1 TATTATT-TATTTTAT
78227399 TATTATGTTATCTATTAT
1 TATTAT-TTAT-T-TTAT
*
78227417 TA-TATTATCTATTTAT
1 TATTATT-TAT-TTTAT
78227433 ATATTATTT-TTATATAT
1 -TATTATTTATT-T-TAT
*
78227450 TATTATATATATTT-T
1 TATTATTTAT-TTTAT
*
78227465 TATT-TCTA-TTTAGT
1 TATTATTTATTTTA-T
78227479 TATTATTTA
1 TATTATTTA
78227488 GTTGTTATTT
Statistics
Matches: 92, Mismatches: 9, Indels: 36
0.67 0.07 0.26
Matches are distributed among these distances:
12 3 0.03
13 3 0.03
14 13 0.14
15 23 0.25
16 20 0.22
17 20 0.22
18 10 0.11
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.65
Consensus pattern (15 bp):
TATTATTTATTTTAT
Found at i:78227386 original size:18 final size:18
Alignment explanation
Indices: 78227363--78227404 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
78227353 ATATTATTTA
78227363 TTTTATTATTCTATCTAT
1 TTTTATTATTCTATCTAT
78227381 TTTTATTATTCTATCTAT
1 TTTTATTATTCTATCTAT
*
78227399 TATTAT
1 TTTTAT
78227405 GTTATCTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTATTCTATCTAT
Found at i:78227388 original size:30 final size:32
Alignment explanation
Indices: 78227352--78227463 Score: 95
Period size: 36 Copynumber: 3.3 Consensus size: 32
78227342 TCTATATTTC
78227352 TATATTATTTATTTTATTAT-TCTATCTATT-T
1 TATATTATTTATTTTATTATGT-TATCTATTAT
78227383 T-TATTATTCTATCTATTATTATGTTATCTATTAT
1 TATATTATT-TAT-T-TTATTATGTTATCTATTAT
* * *
78227417 TATATTATCTATTTATATATTATTTTTATATATTAT
1 TATATTATTTA-TT-T-TATTA-TGTTATCTATTAT
78227453 TATATATATTT
1 TATAT-TATTT
78227464 TTATTTCTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
30 7 0.10
31 4 0.06
32 1 0.01
33 15 0.22
34 8 0.12
35 12 0.18
36 16 0.24
37 4 0.06
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.64
Consensus pattern (32 bp):
TATATTATTTATTTTATTATGTTATCTATTAT
Found at i:78227422 original size:23 final size:23
Alignment explanation
Indices: 78227301--78227511 Score: 87
Period size: 22 Copynumber: 9.3 Consensus size: 23
78227291 TTAATAATAT
78227301 TTATATTAT-TATATT-TATATTA
1 TTATATTATCTAT-TTATATATTA
* *
78227323 ATATATT-TCGATTTATA-A--A
1 TTATATTATCTATTTATATATTA
*
78227342 TCTATATT-TCTATATTATTTATT-
1 T-TATATTATCTAT-TTATATATTA
* *
78227365 TTATTATTCTATCTATTTTTATTATTC
1 TTA-TA-T-TATCTATTTATA-TATTA
* *
78227392 TATCTATTAT-TATGTTATCTATTA
1 T-TATATTATCTAT-TTATATATTA
78227416 TTATATTATCTATTTATATATTA
1 TTATATTATCTATTTATATATTA
*
78227439 TTTTTATATAT-TATTATATATATT-
1 -TTATAT-TATCTATT-TATATATTA
78227463 TT-TATT-TCTATTTAGT-TATTA
1 TTATATTATCTATTTA-TATATTA
*
78227484 TT-TAGTTGT-TATTTATAT-TTA
1 TTATA-TTATCTATTTATATATTA
*
78227505 GTATATT
1 TTATATT
78227512 TAGAATTTAT
Statistics
Matches: 148, Mismatches: 15, Indels: 53
0.69 0.07 0.25
Matches are distributed among these distances:
19 1 0.01
20 17 0.11
21 25 0.17
22 27 0.18
23 22 0.15
24 21 0.14
25 21 0.14
26 10 0.07
27 3 0.02
28 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.63
Consensus pattern (23 bp):
TTATATTATCTATTTATATATTA
Found at i:78227460 original size:12 final size:12
Alignment explanation
Indices: 78227384--78227467 Score: 64
Period size: 12 Copynumber: 6.8 Consensus size: 12
78227374 TATCTATTTT
* *
78227384 TATTATTCTATC
1 TATTATTATATA
*
78227396 TATTATTATGT-
1 TATTATTATATA
78227407 TATCTATTAT-TA
1 TAT-TATTATATA
78227419 TATTATCTATTTATA
1 TATTAT-TA--TATA
*
78227434 TATTATTTTTATA
1 TATTA-TTATATA
78227447 TATTATTATATA
1 TATTATTATATA
*
78227459 TATTTTTAT
1 TATTATTAT
78227468 TTCTATTTAG
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
11 7 0.12
12 34 0.57
13 9 0.15
14 1 0.02
15 8 0.13
16 1 0.02
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (12 bp):
TATTATTATATA
Found at i:78227521 original size:26 final size:27
Alignment explanation
Indices: 78227463--78227530 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 27
78227453 TATATATATT
* *
78227463 TTTATTTCTATTTAGTTATTATTTAGT
1 TTTATTTATATTTAGTTATTATTTAGA
78227490 TGTTATTTATATTTAG-TA-TATTTAGAA
1 T-TTATTTATATTTAGTTATTATTTAG-A
78227517 TTTA-TTATTATTTA
1 TTTATTTA-TATTTA
78227531 ATTTAAGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
25 3 0.08
26 16 0.44
27 4 0.11
28 13 0.36
ACGTcount: A:0.28, C:0.01, G:0.07, T:0.63
Consensus pattern (27 bp):
TTTATTTATATTTAGTTATTATTTAGA
Found at i:78228804 original size:46 final size:46
Alignment explanation
Indices: 78228663--78228880 Score: 150
Period size: 46 Copynumber: 4.7 Consensus size: 46
78228653 ATATCTGTGT
* *
78228663 CGATGCCATGTCCCAGACATGGTCTTACACT-GACAC-ATCTCATAG-C
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CACGCTCTCAAAGAC
* * * * *
78228709 CGATGCATATCCTAGACATGTCTTATACTGGCTTACG-TCTC-GAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC--ACGCTCTCAAAGAC
*
78228755 CGATGCATGTCCCAAACATGTCTTACACTAGCACGCATCTCAAAG-C
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACGC-TCTCAAAGAC
* *
78228801 CGATGCCATGTCCCAGACATGGTATTACAC-A--A-GCTCTCATAATGTGCC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACGCTCTCA-AA---GAC
* *
78228849 CGTTGCATGTCCCAAACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
78228881 TCACAATAAC
Statistics
Matches: 139, Mismatches: 15, Indels: 33
0.74 0.08 0.18
Matches are distributed among these distances:
43 5 0.04
44 17 0.12
45 16 0.12
46 57 0.41
47 31 0.22
48 13 0.09
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACGCTCTCAAAGAC
Found at i:78231730 original size:29 final size:29
Alignment explanation
Indices: 78231688--78231748 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
78231678 TCCCGGGTGA
78231688 TAGTCAATTATCAGCTCATAATCCTTTAT
1 TAGTCAATTATCAGCTCATAATCCTTTAT
*
78231717 TAGTTAATTATCAGCTCATAATCCTTTAT
1 TAGTCAATTATCAGCTCATAATCCTTTAT
78231746 TAG
1 TAG
78231749 CTCTAGCCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (29 bp):
TAGTCAATTATCAGCTCATAATCCTTTAT
Found at i:78235485 original size:46 final size:46
Alignment explanation
Indices: 78235432--78235522 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
78235422 TATATATACA
* * *
78235432 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * * *
78235478 CATCTCATACGCATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
78235523 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:78235939 original size:47 final size:47
Alignment explanation
Indices: 78235536--78235937 Score: 588
Period size: 47 Copynumber: 8.6 Consensus size: 47
78235526 CACATCCACG
* **
78235536 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * * *
78235583 TTTATCACATTGGTCATTCGACCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
78235630 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
78235677 TTCATCACATTGGCCATTCGGCCTTATCACAGATATACATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
78235724 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
78235771 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
78235818 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** * * *
78235865 TTCATCACATTTTCCATTTGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
**
78235912 TTCATCACATTTTCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
78235938 GCTCATGTAT
Statistics
Matches: 325, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 325 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:78235957 original size:141 final size:141
Alignment explanation
Indices: 78235502--78235968 Score: 594
Period size: 141 Copynumber: 3.3 Consensus size: 141
78235492 TTCGCATTAA
* ** * * * *
78235502 CCATTCGGCTTTCCCACATATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
** * *
78235567 TGTATGCATGTTCACATTTATCACATTGGT-CATTCGACCTTATCACATATATGCATGTTCATAT
66 CATATGCATGTTCACATTCATCACATT-GTCCATTCGGCCTTATCACATATATGCATGTTCATAT
*
78235631 TCTTCACATTGG
130 TCATCACATTGG
* **
78235643 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * * *
78235708 GATATACATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
66 CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
78235773 CATCACATTGG
131 CATCACATTGG
** *
78235784 CCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGTCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * * * * * *
78235849 CAAATGCATGTTCACATTCATCACATTTTCCATTTGGCCTTAGCACACAAATGCATGTTCACATT
66 CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
**
78235914 CATCACATTTT
131 CATCACATTGG
* * ** *
78235925 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACAT
78235969 AAAATCCTAA
Statistics
Matches: 285, Mismatches: 40, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
140 1 0.00
141 284 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (141 bp):
CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCATATT
CATCACATTGG
Found at i:78240466 original size:46 final size:46
Alignment explanation
Indices: 78240359--78240528 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
78240349 GCATATCTGT
* * *
78240359 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACGTATCG-A
* * *
78240405 GCTGATG-CATATCCCAGACAT-GTCTTACACTGGCTTACGTTTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACGTATCGA
* * *
78240450 GGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGC-ACTCGTATCAAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA--CGTATC-GA
78240497 GCCGATGCCATGTCCCAGACATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
78240529 AAGGTCCCAT
Statistics
Matches: 104, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 13 0.12
45 14 0.13
46 54 0.52
47 14 0.13
48 9 0.09
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACGTATCGA
Found at i:78243777 original size:15 final size:15
Alignment explanation
Indices: 78243757--78243796 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
78243747 TTTTAGAATT
78243757 AGTTTTCTTTGTGCA
1 AGTTTTCTTTGTGCA
78243772 AGTTTTCTTTGTGCA
1 AGTTTTCTTTGTGCA
*
78243787 AGATTTCTTT
1 AGTTTTCTTT
78243797 CTTGAGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.12, G:0.17, T:0.55
Consensus pattern (15 bp):
AGTTTTCTTTGTGCA
Found at i:78245405 original size:49 final size:49
Alignment explanation
Indices: 78245352--78245583 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
78245342 TTGGTACGCA
* * *
78245352 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
* ** *
78245401 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGATACACG
* * * * * *
78245451 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGATACACG
* *
78245502 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
*
78245551 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
78245584 TCACAATAGA
Statistics
Matches: 156, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 71 0.46
50 47 0.30
51 38 0.24
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
Found at i:78245578 original size:100 final size:99
Alignment explanation
Indices: 78245352--78245583 Score: 331
Period size: 100 Copynumber: 2.3 Consensus size: 99
78245342 TTGGTACGCA
* * **
78245352 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
* * *
78245417 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACAATCCGATACACG
* * *
78245451 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
* *
78245516 TAGTACTACACATGCGACC-AATAATCCGATACACG
64 TAGTACTACACACGCGACCTAACAATCCGATACACG
78245551 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
78245584 TCACAATAGA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.25
100 47 0.40
101 41 0.35
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACAATCCGATACACG
Found at i:78249692 original size:46 final size:46
Alignment explanation
Indices: 78249625--78249799 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
78249615 TGTAACCCGC
* *
78249625 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
78249671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * * *
78249721 -C-TCA-CGAACTAGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
78249764 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
78249800 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 60 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:78249740 original size:93 final size:93
Alignment explanation
Indices: 78249632--78249803 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
78249622 CGCCCATAAG
* * * *
78249632 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78249697 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
78249725 CGAACTAGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78249790 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
78249804 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTAGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:78252806 original size:48 final size:47
Alignment explanation
Indices: 78252652--78252820 Score: 169
Period size: 48 Copynumber: 3.6 Consensus size: 47
78252642 GGGTGAGTGT
*
78252652 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGATA-TAAA
* * * * * ** *
78252700 GCCAGTGTAAGACATGTTTAGGACATGCATCGGCATTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGATATAAA
* * * * *
78252746 GTTAGTGTAAGACATATCTGGGTCATGCATCGACCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGATATA-AA
* *
78252794 GCTAGTGTAAGACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
78252821 GCGTCAGCTT
Statistics
Matches: 92, Mismatches: 27, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
46 32 0.35
47 1 0.01
48 59 0.64
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGATATAAA
Found at i:78252900 original size:49 final size:49
Alignment explanation
Indices: 78252843--78252964 Score: 158
Period size: 49 Copynumber: 2.5 Consensus size: 49
78252833 AGTGTGTCAG
*
78252843 TGTAAGACCTGGT-TGGGACATGGCATCGACAC-CGATAGATGAGAGCCAA
1 TGTAAGACCT-GTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCCAA
* * * *
78252892 TGTAAGACCTGTCTGGGACATGGCATCGGCCTCGCTATATGAAAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAA
78252941 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACC-TGTCTGGGACATGG
78252965 TGTTGGCATT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
48 3 0.05
49 48 0.74
50 14 0.22
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAA
Found at i:78254139 original size:21 final size:20
Alignment explanation
Indices: 78254114--78254153 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
78254104 GTGATAATGA
78254114 CCACACGAGT-GTGTTGCCCTT
1 CCACACG-GTCGTG-TGCCCTT
78254135 CCACACGGTCGTGTGCCCT
1 CCACACGGTCGTGTGCCCT
78254154 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (20 bp):
CCACACGGTCGTGTGCCCTT
Found at i:78265191 original size:16 final size:16
Alignment explanation
Indices: 78265167--78265214 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
78265157 TTTTGTTAAG
*
78265167 TAATTTTTAGTGATTT
1 TAATGTTTAGTGATTT
78265183 TAATGTTTAGAT-ATTT
1 TAATGTTTAG-TGATTT
*
78265199 TAATGTTTAGGGATTT
1 TAATGTTTAGTGATTT
78265215 ATTTGTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 27 0.96
17 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.56
Consensus pattern (16 bp):
TAATGTTTAGTGATTT
Found at i:78274096 original size:21 final size:20
Alignment explanation
Indices: 78274062--78274100 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
78274052 GAGTATTTTG
78274062 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
* *
78274083 ATGTTTGATTATAGTTAT
1 ATGTTTAATGATAGTTAT
78274101 ACAAGTTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:78296094 original size:80 final size:80
Alignment explanation
Indices: 78295956--78296123 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 80
78295946 AACTTTTGAA
* * * * * *
78295956 TGAATGTACATAAGTGCGCATGTTTGTACTTCGGTACTCTTGAATGCACATACATGCCCCTATTT
1 TGAATGCACATAAGTGCCCATGTTTGTACTTCGGTACCCATGAATACACATAAATGCCCCTATTT
78296021 CTACTTCAGTACCCC
66 CTACTTCAGTACCCC
*
78296036 TGAATGCACATAAGTTCCCATGTTTGTACTTCGGTACCCATGAATACACA-AAAGTGCCCCTATT
1 TGAATGCACATAAGTGCCCATGTTTGTACTTCGGTACCCATGAATACACATAAA-TGCCCCTATT
* * *
78296100 TGTATTTCGGTACCCC
65 TCTACTTCAGTACCCC
78296116 TGAATGCA
1 TGAATGCA
78296124 TTTACGTGCC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 2 0.03
80 75 0.97
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (80 bp):
TGAATGCACATAAGTGCCCATGTTTGTACTTCGGTACCCATGAATACACATAAATGCCCCTATTT
CTACTTCAGTACCCC
Found at i:78296133 original size:40 final size:40
Alignment explanation
Indices: 78295956--78296159 Score: 187
Period size: 40 Copynumber: 5.1 Consensus size: 40
78295946 AACTTTTGAA
* * * * * *
78295956 TGAATGTACATAAGTGCGCATGTTTGTACTTCGGTACTCT
1 TGAATGCACATAAGTGCCCCTATTTGTACTTCGGTACCCC
* *
78295996 TGAATGCACATACA-TGCCCCTATTTCTACTTCAGTACCCC
1 TGAATGCACATA-AGTGCCCCTATTTGTACTTCGGTACCCC
* * * *
78296036 TGAATGCACATAAGTTCCCATGTTTGTACTTCGGTACCCA
1 TGAATGCACATAAGTGCCCCTATTTGTACTTCGGTACCCC
* * *
78296076 TGAATACACAAAAGTGCCCCTATTTGTATTTCGGTACCCC
1 TGAATGCACATAAGTGCCCCTATTTGTACTTCGGTACCCC
** * * * * *
78296116 TGAATGCATTTACGTG-CCCTATTTATACTCCGGTAACTC
1 TGAATGCACATAAGTGCCCCTATTTGTACTTCGGTACCCC
78296155 TGAAT
1 TGAAT
78296160 TATATATTAT
Statistics
Matches: 131, Mismatches: 31, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
39 24 0.18
40 106 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (40 bp):
TGAATGCACATAAGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:78296558 original size:22 final size:24
Alignment explanation
Indices: 78296511--78296558 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 24
78296501 TTTTGGTCAC
*
78296511 TTTTGGTAATTGATGTGTATGTCT
1 TTTTGGTAATTGATGTGTATGGCT
78296535 TTTTGGT-A-TGATGATGT-TGGCT
1 TTTTGGTAATTGATG-TGTATGGCT
78296557 TT
1 TT
78296559 GAAATGGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 11 0.50
23 4 0.18
24 7 0.32
ACGTcount: A:0.15, C:0.04, G:0.27, T:0.54
Consensus pattern (24 bp):
TTTTGGTAATTGATGTGTATGGCT
Found at i:78296980 original size:42 final size:42
Alignment explanation
Indices: 78296928--78297045 Score: 218
Period size: 42 Copynumber: 2.8 Consensus size: 42
78296918 AGTGTACAAG
* *
78296928 TCAGTGAGTTACATGGCCTGGCACACGGACGTGTAGGGTTTC
1 TCAGAGAGTTACATGGCCTGGCACACGGACGTGTAGGGTTAC
78296970 TCAGAGAGTTACATGGCCTGGCACACGGACGTGTAGGGTTAC
1 TCAGAGAGTTACATGGCCTGGCACACGGACGTGTAGGGTTAC
78297012 TCAGAGAGTTACATGGCCTGGCACACGGACGTGT
1 TCAGAGAGTTACATGGCCTGGCACACGGACGTGT
78297046 GACACGGCCG
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (42 bp):
TCAGAGAGTTACATGGCCTGGCACACGGACGTGTAGGGTTAC
Found at i:78307016 original size:21 final size:22
Alignment explanation
Indices: 78306987--78307033 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
78306977 CAGAAGGAGT
*
78306987 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
78307009 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
78307030 GAGT
1 GAGT
78307034 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:78311444 original size:18 final size:17
Alignment explanation
Indices: 78311421--78311466 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
78311411 TATTGCTTTT
*
78311421 AAAAAATATTTTTGGGA
1 AAAAAATATTTTTGAGA
*
78311438 CAAAAAACATTTTTGAGA
1 -AAAAAATATTTTTGAGA
*
78311456 TAAAAATATTT
1 AAAAAATATTT
78311467 CTAAATAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (17 bp):
AAAAAATATTTTTGAGA
Found at i:78313008 original size:13 final size:13
Alignment explanation
Indices: 78312992--78313022 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
78312982 TCTATAACAA
78312992 AAAATAATAATTT
1 AAAATAATAATTT
*
78313005 AAAATAATGATTT
1 AAAATAATAATTT
78313018 AAAAT
1 AAAAT
78313023 TACAAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (13 bp):
AAAATAATAATTT
Found at i:78314749 original size:2 final size:2
Alignment explanation
Indices: 78314742--78314781 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
78314732 AATAAGGCCT
78314742 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
78314782 TGTTGGGTGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:78320802 original size:20 final size:20
Alignment explanation
Indices: 78320774--78320811 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78320764 GTTCGCTTCT
*
78320774 CCCACGCCCGTGTATGTAAA
1 CCCACGCCCGCGTATGTAAA
*
78320794 CCCATGCCCGCGTATGTA
1 CCCACGCCCGCGTATGTA
78320812 GACCTACGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.37, G:0.21, T:0.21
Consensus pattern (20 bp):
CCCACGCCCGCGTATGTAAA
Found at i:78329140 original size:40 final size:40
Alignment explanation
Indices: 78329095--78329292 Score: 258
Period size: 40 Copynumber: 5.0 Consensus size: 40
78329085 GATTTAACCA
* * * *
78329095 GATATAGCT-ACTCGCTCGAATACCTTCGGGACATAGCCCG
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCG
78329135 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
78329175 GA-ACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
78329215 GATATGGTAACTCGCACAAATGCCTTCTGGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * * *
78329255 GA-ACTAGTCACTAGCGCAAATGCCTTCTGGACTTAGCC
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
78329293 TGGTTATCAT
Statistics
Matches: 144, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 140 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
Found at i:78329237 original size:80 final size:80
Alignment explanation
Indices: 78329117--78329292 Score: 289
Period size: 80 Copynumber: 2.2 Consensus size: 80
78329107 CGCTCGAATA
*
78329117 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
*
78329182 TAACTCGCACAAATG
66 TAACTAGCACAAATG
* *
78329197 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCACAAATGCCTTCTGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
* *
78329262 TCACTAGCGCAAATG
66 TAACTAGCACAAATG
*
78329277 CCTTCTGGACTTAGCC
1 CCTTCGGGACTTAGCC
78329293 TGGTTATCAT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 89 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
TAACTAGCACAAATG
Found at i:78331305 original size:11 final size:11
Alignment explanation
Indices: 78331291--78331331 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
78331281 AATCAAAAGA
78331291 AAAATAAGAAT
1 AAAATAAGAAT
78331302 AAAAT-A-AAT
1 AAAATAAGAAT
*
78331311 AAAATAAAAAT
1 AAAATAAGAAT
78331322 AAAATAAGAA
1 AAAATAAGAA
78331332 GATTCAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 8 0.30
10 2 0.07
11 17 0.63
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (11 bp):
AAAATAAGAAT
Found at i:78331307 original size:5 final size:5
Alignment explanation
Indices: 78331253--78331328 Score: 57
Period size: 6 Copynumber: 14.4 Consensus size: 5
78331243 TATGTCTTTC
* * *
78331253 AAAAT AAGA- AAATT AAAAT GAAAAT AAAAAT CAAAAGA AAAAT AAGAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAA-T AAAAT AA-AAT
78331302 AAAAT -AAAT AAAAT AAAAAT AAAAT AA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AA
78331329 GAAGATTCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 6 0.11
5 23 0.40
6 28 0.49
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:78331316 original size:20 final size:20
Alignment explanation
Indices: 78331268--78331328 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
78331258 AAGAAAATTA
*
78331268 AAATGAAAATAAAAATCAAA-
1 AAAT-AAAATAAAAATAAAAT
* *
78331288 AGA-AAAATAAGAATAAAAT
1 AAATAAAATAAAAATAAAAT
78331307 AAATAAAATAAAAATAAAAT
1 AAATAAAATAAAAATAAAAT
78331327 AA
1 AA
78331329 GAAGATTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
18 13 0.38
19 2 0.06
20 19 0.56
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (20 bp):
AAATAAAATAAAAATAAAAT
Found at i:78336712 original size:13 final size:13
Alignment explanation
Indices: 78336694--78336719 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78336684 GGTTTGTTTA
78336694 TTAAACTAATTAT
1 TTAAACTAATTAT
78336707 TTAAACTAATTAT
1 TTAAACTAATTAT
78336720 CTAATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:78341802 original size:46 final size:46
Alignment explanation
Indices: 78341735--78341863 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
78341725 TGTAACCCGC
* * * *
78341735 CCATAAGCGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
78341781 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78341827 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78341864 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 2 0.03
46 75 0.97
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78347551 original size:46 final size:46
Alignment explanation
Indices: 78347496--78347624 Score: 145
Period size: 46 Copynumber: 2.8 Consensus size: 46
78347486 GGTGGTATGT
*
78347496 GAGCCAGTGTAAGACATGTCTCGGACATGCATCGGCCA-TATCATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATTA-CATGA
* * * * *
78347542 GTGCCAGTGTAAGACATGTATGGGACATGTATCAG-CATTGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATT-ACATGA
* * *
78347588 GAGCTAGTGTAAGACATGTCTGGGAGATGCATTGGCC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
78347625 TCGGGATATA
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
45 2 0.03
46 63 0.94
47 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACATGA
Found at i:78347744 original size:49 final size:49
Alignment explanation
Indices: 78347688--78347856 Score: 173
Period size: 49 Copynumber: 3.5 Consensus size: 49
78347678 GTGTGTCAGC
* * *
78347688 GTAAGACCTATCTAGGACATGGCATCGACAC-CGATAGATGAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCCAGT
* * *
78347737 GTAAGACCTGTTTGGGACATGGCATCGACCTCGATATATGAAAGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGT
* * * ** **
78347786 GTAAGACCTGTCTGGGACACGGCATTGACTTTAAT-G-TGCTAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGT
*
78347833 GTTAGACCATGTCTGGGACATGGC
1 GTAAGACC-TGTCTGGGACATGGC
78347857 GTCGGCCTTT
Statistics
Matches: 100, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
47 15 0.15
48 15 0.15
49 70 0.70
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCAGT
Found at i:78348010 original size:136 final size:136
Alignment explanation
Indices: 78347765--78348025 Score: 405
Period size: 136 Copynumber: 1.9 Consensus size: 136
78347755 ATGGCATCGA
* * * *
78347765 CCTCGATATATGAAAGTCAGTGTAAGACCTGTCTGGGACACGGCATTGACTTTAATGTGCTAGCC
1 CCTCGATATATGAAAGTCACTGTAAGACCAGTCTGGGACACGGCATCGACTTTAATGTGCTAGAC
* * * * * *
78347830 AGTGTTAGACCATGTCTGGGACATGGCGTCGGCCTTTTATCCCATGTTCGGGGCTATTGAGTATG
66 AGTGTAAAACCATGTCTGGGACATGGCGTCAGCATTTTAACCCATGTTCAGGGCTATTGAGTATG
78347895 CATTGG
131 CATTGG
*
78347901 CCTCGATATATGAAAGTCACTGTATGACCAGTCTGGGACACGGCATCGACTTTAATGTGCTAGAC
1 CCTCGATATATGAAAGTCACTGTAAGACCAGTCTGGGACACGGCATCGACTTTAATGTGCTAGAC
* *
78347966 AGTGTAAAACCATGTCTGGGACATGGTGTTAGCATTTTAACCCATGTTCAGGGCTATTGA
66 AGTGTAAAACCATGTCTGGGACATGGCGTCAGCATTTTAACCCATGTTCAGGGCTATTGA
78348026 ATATTCGGTA
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
136 112 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (136 bp):
CCTCGATATATGAAAGTCACTGTAAGACCAGTCTGGGACACGGCATCGACTTTAATGTGCTAGAC
AGTGTAAAACCATGTCTGGGACATGGCGTCAGCATTTTAACCCATGTTCAGGGCTATTGAGTATG
CATTGG
Found at i:78349168 original size:21 final size:20
Alignment explanation
Indices: 78349135--78349173 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
78349125 TCATAATGGA
*
78349135 CACATGGGCGTGTTGCCCTTC
1 CACACGGGCGTG-TGCCCTTC
*
78349156 CACACGGGTGTGTGCCCT
1 CACACGGGCGTGTGCCCT
78349174 GCTTCAAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.10, C:0.33, G:0.31, T:0.26
Consensus pattern (20 bp):
CACACGGGCGTGTGCCCTTC
Found at i:78350748 original size:27 final size:27
Alignment explanation
Indices: 78350718--78350832 Score: 158
Period size: 27 Copynumber: 4.3 Consensus size: 27
78350708 AGGGCAAAAT
* * *
78350718 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
78350745 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
78350772 AGTAATTCTAACCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
78350799 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
78350826 GGTAATT
1 GGTAATT
78350833 TCACAAATCA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:78350919 original size:54 final size:53
Alignment explanation
Indices: 78350818--78350968 Score: 223
Period size: 54 Copynumber: 2.8 Consensus size: 53
78350808 ACCCTACAAG
*
78350818 GGTATTTCGGTAATTTCACAAA-TCAGGGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTACAAACT-AGGGTATTTTGGTAATTTTGTAAACCAAT
*
78350871 GGTATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTACAAACTAGGG-TATTTTGGTAATTTTGTAAACCAAT
* **
78350925 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTT
1 GGTATTTCGGTAATTTTACAAA-CTAGGGTATTTTGGTAATTTT
78350969 ACAATCGACG
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
53 24 0.27
54 60 0.67
55 5 0.06
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTGTAAACCAAT
Found at i:78350955 original size:27 final size:27
Alignment explanation
Indices: 78350816--78351046 Score: 186
Period size: 27 Copynumber: 8.7 Consensus size: 27
78350806 CTACCCTACA
* *
78350816 AGGGTATTTCGGTAATTTCACAAATC-
1 AGGGTATTTCGGTAATTTTACAAACCG
* ** *
78350842 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCGGTAATTTTACAAACCG
* * *
78350869 ATGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTCGGTAATTTTACAAACCG
* ** *
78350895 AGGGATATTTTGGTAATTTTGTAAACCA
1 AGGG-TATTTCGGTAATTTTACAAACCG
* *
78350923 ATGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAACCG
* *
78350950 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAACCG
* * * *
78350976 ACGGTATTTCAGTAACTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAACCG
*
78351003 GGGGTACTTT-GGTAATTTTAC-AA-CG
1 AGGGTA-TTTCGGTAATTTTACAAACCG
*
78351028 AGGGGTATTTCAGTAATTT
1 A-GGGTATTTCGGTAATTT
78351047 GGTAAACTAA
Statistics
Matches: 166, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
25 5 0.03
26 62 0.37
27 92 0.55
28 7 0.04
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAACCG
Found at i:78350981 original size:26 final size:26
Alignment explanation
Indices: 78350925--78351046 Score: 133
Period size: 26 Copynumber: 4.6 Consensus size: 26
78350915 GTAAACCAAT
*
78350925 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCAGTAATTTTAC-AATCGAG
*
78350952 GGTATTTCAGTAATTTTACAATCGAC
1 GGTATTTCAGTAATTTTACAATCGAG
* *
78350978 GGTATTTCAGTAACTTTATA-AACCGGG
1 GGTATTTCAGTAA-TTT-TACAATCGAG
*
78351005 GGTACTTT-GGTAATTTTACAA-CGAGG
1 GGTA-TTTCAGTAATTTTACAATCGA-G
78351031 GGTATTTCAGTAATTT
1 GGTATTTCAGTAATTT
78351047 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
25 7 0.09
26 36 0.44
27 33 0.41
28 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (26 bp):
GGTATTTCAGTAATTTTACAATCGAG
Found at i:78351008 original size:53 final size:53
Alignment explanation
Indices: 78350925--78351043 Score: 143
Period size: 53 Copynumber: 2.2 Consensus size: 53
78350915 GTAAACCAAT
* * *
78350925 GGTATTTCGGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAATCGA-C
1 GGTATTTCAGTAACTTTACAAACCGAGGGTACTTT-AGTAATTTTACAA-CGAGC
* * * *
78350978 GGTATTTCAGTAACTTTATAAACCGGGGGTACTTTGGTAATTTTACAACGAGG
1 GGTATTTCAGTAACTTTACAAACCGAGGGTACTTTAGTAATTTTACAACGAGC
78351031 GGTATTTCAGTAA
1 GGTATTTCAGTAA
78351044 TTTGGTAAAC
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
52 3 0.05
53 51 0.89
54 3 0.05
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (53 bp):
GGTATTTCAGTAACTTTACAAACCGAGGGTACTTTAGTAATTTTACAACGAGC
Found at i:78355357 original size:80 final size:80
Alignment explanation
Indices: 78355139--78355362 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
78355129 TTGAATGATG
* * * * *
78355139 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
78355202 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
78355219 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
78355281 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
78355297 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
78355362 G
66 G
78355363 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:78355376 original size:40 final size:40
Alignment explanation
Indices: 78355139--78355362 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
78355129 TTGAATGATG
* * * *
78355139 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78355179 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
78355219 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78355257 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78355297 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78355338 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78355363 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78363398 original size:40 final size:40
Alignment explanation
Indices: 78363167--78363391 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
78363157 TTGAATGATG
* * * *
78363167 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
78363207 TCCGGACTAAAAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
78363247 TCCGGGCTAAG-CCCGAAGGCATTGGTGCTAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78363286 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78363326 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78363367 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78363392 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 112 0.71
41 12 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78363398 original size:80 final size:78
Alignment explanation
Indices: 78363222--78363414 Score: 237
Period size: 80 Copynumber: 2.4 Consensus size: 78
78363212 ACTAAAATCT
* * *
78363222 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCTAGTGACTAAAT
1 GAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTGACTAAAT
*
78363287 CCGGGTTAAGTCCC
65 CCGGGCTAAGTCCC
* *
78363301 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 GAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTGACTA-A
*
78363366 A-CCGGGCTATGTCCC
63 ATCCGGGCTAAGTCCC
** *
78363381 GAAGGCATTTGAACGAGTAGCTATATCC-GGTTAA
1 GAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAA
78363415 AATCCGAAGG
Statistics
Matches: 100, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
79 41 0.41
80 57 0.57
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
GAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTGACTAAATC
CGGGCTAAGTCCC
Found at i:78368349 original size:49 final size:49
Alignment explanation
Indices: 78368292--78368413 Score: 158
Period size: 49 Copynumber: 2.5 Consensus size: 49
78368282 TGTGTTTGTG
78368292 TAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAAC-CAGTA
1 TAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGA-AACTCAGTA
* * * *
78368341 TAAGACCTGTCTGGGACATGGTATCGACCTCGATATATGAAACTCGGTG
1 TAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAACTCAGTA
* *
78368390 TAAGCCCTATCTGGGACATGGCAT
1 TAAGACCTGTCTGGGACATGGCAT
78368414 TGACTTTAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
48 4 0.06
49 60 0.94
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (49 bp):
TAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAACTCAGTA
Found at i:78372071 original size:35 final size:35
Alignment explanation
Indices: 78372025--78372093 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
78372015 TACCAAAGAG
*
78372025 TTCTGAACTTATTCAGAAAATTCTACATGAAGCAA
1 TTCTGAACTTATTCAGAAAATTCTACACGAAGCAA
*
78372060 TTCTGAACTTATTCAGAAAATTCTATACGAAGCA
1 TTCTGAACTTATTCAGAAAATTCTACACGAAGCA
78372094 CACAATGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (35 bp):
TTCTGAACTTATTCAGAAAATTCTACACGAAGCAA
Found at i:78374337 original size:46 final size:45
Alignment explanation
Indices: 78374270--78374433 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 45
78374260 TATGTGTGCT
*
78374270 AGTGTAATACATGTCTGGGACATGCATCAGCCACAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* * *
78374316 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-ATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGA---GAGCC
* * * * *
78374364 AATGTAAGACATGTTTGGGACATGCATCAG-CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--CAGATGAGAGCC
*
78374410 AGTGTAAGACATGTCTAGGACATG
1 AGTGTAAGACATGTCTGGGACATG
78374434 TATCGGCCTT
Statistics
Matches: 96, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 57 0.59
47 3 0.03
48 34 0.35
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:78374419 original size:94 final size:94
Alignment explanation
Indices: 78374272--78374487 Score: 265
Period size: 94 Copynumber: 2.3 Consensus size: 94
78374262 TGTGTGCTAG
* * *
78374272 TGTAATACATGTCTGGGACATGCATCAGCCACAGCATGAGAGCCAGTGTAAGACATGTCTGGGAC
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAGCACGAGAGCCAGTGTAAGACATGTCTAGGAC
**
78374337 ATGCATCGGCCTCGAGATATTTAAGCCAA
66 ATGCATCGGCCTCGAGATATACAAGCCAA
* * *
78374366 TGTAAGACATGTTTGGGACATGCATCAG-CATTGAG-ACGAGAGCTAGTGTAAGACATGTCTAGG
1 TGTAAGACATGTCTGGGACATGCATCAGCCA--CAGCACGAGAGCCAGTGTAAGACATGTCTAGG
* * * * *
78374429 ACATGTATCGGCCTTGCGATATACAAGCTAG
64 ACATGCATCGGCCTCGAGATATACAAGCCAA
*
78374460 TGTAAGACCTGTCTGGGACATGGCATCA
1 TGTAAGACATGTCTGGGACAT-GCATCA
78374488 ACTTGTGGTA
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
93 2 0.02
94 94 0.90
95 8 0.08
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (94 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACAGCACGAGAGCCAGTGTAAGACATGTCTAGGAC
ATGCATCGGCCTCGAGATATACAAGCCAA
Found at i:78374564 original size:49 final size:49
Alignment explanation
Indices: 78374307--78374625 Score: 162
Period size: 48 Copynumber: 6.7 Consensus size: 49
78374297 CAGCCACAGC
* * * ** * *
78374307 ATGAGAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGAT
1 ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGATAG
** * * * * * * *
78374355 ATTTAAGCCAATGTAAGACATGTTTGGGACAT-GCATCAGCATTG--AG
1 ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGATAG
* * * * * **
78374401 ACGAGAGCTAGTGTAAGACATGTCTAGGACAT-GTATCGGCCTTGCGAT--
1 ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACC-T-CGATAG
* * *
78374449 AT-ACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCAA-CTTG-T-G
1 ATGA-AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGATAG
* * *
78374495 --GTATGTCAGTGTAAGACCTGTCTAGGACATGGCATCAACAC-CGATAG
1 ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAAC-CTCGATAG
* * * * ** * *
78374542 ATGAGAGCCAGTGTAAGACCTGTCTGGGATATGGCGTCGGCCTCGTTAT
1 ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGATAG
78374591 ATGAAAGCCAGTGTAAGACCATGTCTAGGACATGG
1 ATGAAAGCCAGTGTAAGACC-TGTCTAGGACATGG
78374626 TGTCGGCATC
Statistics
Matches: 206, Mismatches: 49, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
44 32 0.16
45 2 0.01
46 34 0.17
47 4 0.02
48 65 0.32
49 57 0.28
50 12 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
ATGAAAGCCAGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGATAG
Found at i:78384833 original size:40 final size:40
Alignment explanation
Indices: 78384778--78385099 Score: 448
Period size: 40 Copynumber: 8.1 Consensus size: 40
78384768 ATTGAGAGTT
78384778 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
78384818 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
78384858 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
78384898 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTACTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
78384938 TTATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
78384978 TTATATCCGGGCTAAGTCTCGAAGAGTATTCGTGCTAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* ** * *
78385018 TTATATTAGGGTTAAGTCCCGAAGAGCATTCGT-CTTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC-TAGTG
* * * *
78385058 TTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
78385098 AT
1 AT
78385100 GTGTATTCGG
Statistics
Matches: 253, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.00
40 251 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:78385311 original size:25 final size:25
Alignment explanation
Indices: 78385261--78385311 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
78385251 TGTGTAACAA
* *
78385261 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
78385286 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
78385311 C
1 C
78385312 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:78401359 original size:48 final size:46
Alignment explanation
Indices: 78401297--78401462 Score: 212
Period size: 48 Copynumber: 3.6 Consensus size: 46
78401287 TGATATGTGT
*
78401297 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--CAA
* * * *
78401345 GCCAATGTAAGACATGTCTGGGACATGCATCGGCATTGAG--ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATACAA
*
78401389 GAACTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCG-TACAA
1 G--CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATACAA
*
78401436 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
78401463 GCGTCAACTT
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
44 3 0.03
45 25 0.24
46 35 0.34
47 5 0.05
48 36 0.35
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATACAA
Found at i:78401589 original size:49 final size:49
Alignment explanation
Indices: 78401482--78401591 Score: 116
Period size: 49 Copynumber: 2.2 Consensus size: 49
78401472 TGTGGTGTGT
* * * *
78401482 CAGTGTAAGACCTGTCTGGGACATGGCATCTACACTGATAGATAAGAGC
1 CAGTGTAAGACCTATATGGGACATGGCATCGACACTGATAGATAAGAGA
* * * *
78401531 CAGTCTAAGACCTATATGGGACATGGCATCGGC-CTCGTTATATGAA-AGA
1 CAGTGTAAGACCTATATGGGACATGGCATCGACACT-GATAGAT-AAGAGA
78401580 CAGTGTAAGACC
1 CAGTGTAAGACC
78401592 ATGTCTAGGA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
48 2 0.04
49 46 0.92
50 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTATATGGGACATGGCATCGACACTGATAGATAAGAGA
Found at i:78417422 original size:46 final size:45
Alignment explanation
Indices: 78417355--78417528 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
78417345 ACATTTTGTA
*
78417355 GCCGATGAATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTC-AG
* * * * *
78417401 GCTGATGCATGTCCCAAACATGTCTTCCACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-AG
* * *
78417447 GCCGATGTCATGTACCAGACATGGTCTTACACTGGCTCTCATAAT-ATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCA-G
78417495 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
78417529 ACACAAATGA
Statistics
Matches: 106, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
46 55 0.52
47 27 0.25
48 23 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAG
Found at i:78417474 original size:94 final size:92
Alignment explanation
Indices: 78417355--78417528 Score: 219
Period size: 94 Copynumber: 1.9 Consensus size: 92
78417345 ACATTTTGTA
* * *
78417355 GCCGATGAATGTCCCAGACATGTCTTACACTAGCT-TACAT-CTCGA-GGCTGATGCATGTCCCA
1 GCCGATGAATGTACCAGACATGTCTTACACTAGCTCT-CATAAT--ATGGCCGATGCATGTCCCA
*
78417417 AACATGTCTTCCACTAGCTCTCGTCTCAAT
63 AACATGTCTTACACTAGCTCTCGTCTCAAT
* * *
78417447 GCCGATGTCATGTACCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAG
1 GCCGATG-AATGTACCAGACAT-GTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAA
78417512 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
78417529 ACACAAATGA
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 48 0.69
95 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GCCGATGAATGTACCAGACATGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCTCTCGTCTCAAT
Found at i:78421901 original size:46 final size:45
Alignment explanation
Indices: 78421836--78421959 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 45
78421826 ATCTCGAGGC
* *
78421836 CGATGCATGTCCCAGACATGTCTTACACTATCTCTCGTCTCAA-T-GA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGGA
* *
78421882 CGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGA
*
78421928 TGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
78421960 ACACATATCA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 64 0.94
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGA
Found at i:78423691 original size:24 final size:24
Alignment explanation
Indices: 78423659--78423707 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
78423649 TTACTTACGC
78423659 GAACAAGTGTCT-AAGTAAGTTCGT
1 GAACAAGTGT-TGAAGTAAGTTCGT
78423683 GAACAAGTGTTGAAGTAAGTTCGT
1 GAACAAGTGTTGAAGTAAGTTCGT
78423707 G
1 G
78423708 TATCTTAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (24 bp):
GAACAAGTGTTGAAGTAAGTTCGT
Found at i:78437321 original size:24 final size:24
Alignment explanation
Indices: 78437289--78437338 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
78437279 ATCATAAATA
78437289 TATTTTTTAATTTATTAAATAATG
1 TATTTTTTAATTTATTAAATAATG
* *
78437313 TATTTTTTATTTTATTAATTAATG
1 TATTTTTTAATTTATTAAATAATG
78437337 TA
1 TA
78437339 AAATAAGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (24 bp):
TATTTTTTAATTTATTAAATAATG
Found at i:78440368 original size:55 final size:55
Alignment explanation
Indices: 78440263--78440372 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 55
78440253 AAAATTTAAC
** * * * * * *
78440263 AAATTTGGCGTTCAATATTTACAAAAATTTTCATTTTAGTTTTAATTCTAAAAAT
1 AAATTTGGCCCTCAATAATTACAAAAATTATCAATTTAATCTTAACTCTAAAAAT
78440318 AAATTTGGCCCTCAATAATTAC-AAAATCTATCAATTTAATCTTAACTCTAAAAAT
1 AAATTTGGCCCTCAATAATTACAAAAAT-TATCAATTTAATCTTAACTCTAAAAAT
78440373 TTAAAAATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 5 0.11
55 41 0.89
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (55 bp):
AAATTTGGCCCTCAATAATTACAAAAATTATCAATTTAATCTTAACTCTAAAAAT
Found at i:78455500 original size:23 final size:24
Alignment explanation
Indices: 78455469--78455521 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
78455459 ATTAAGCATG
*
78455469 AGGATGGTAGTTGACCTAGGGTTA
1 AGGATGGTAGCTGACCTAGGGTTA
*
78455493 AGGA-GGTAGCTGACTTAGGGTTA
1 AGGATGGTAGCTGACCTAGGGTTA
78455516 AGGATG
1 AGGATG
78455522 ACAATCACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.26, C:0.08, G:0.40, T:0.26
Consensus pattern (24 bp):
AGGATGGTAGCTGACCTAGGGTTA
Found at i:78459791 original size:62 final size:62
Alignment explanation
Indices: 78459694--78459812 Score: 238
Period size: 62 Copynumber: 1.9 Consensus size: 62
78459684 CTCATTGGAA
78459694 ATTGTTTCGAAGAATTGAGAAAGATTGGTTTGTACTAATTTTCATCTAATTGGTTTGGGGAT
1 ATTGTTTCGAAGAATTGAGAAAGATTGGTTTGTACTAATTTTCATCTAATTGGTTTGGGGAT
78459756 ATTGTTTCGAAGAATTGAGAAAGATTGGTTTGTACTAATTTTCATCTAATTGGTTTG
1 ATTGTTTCGAAGAATTGAGAAAGATTGGTTTGTACTAATTTTCATCTAATTGGTTTG
78459813 TACTAATTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.43
Consensus pattern (62 bp):
ATTGTTTCGAAGAATTGAGAAAGATTGGTTTGTACTAATTTTCATCTAATTGGTTTGGGGAT
Done.