Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 236 of 332
Found at i:78459810 original size:25 final size:25
Alignment explanation
Indices: 78459779--78459829 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
78459769 ATTGAGAAAG
78459779 ATTGGTTTGTACTAATTTTCATCTA
1 ATTGGTTTGTACTAATTTTCATCTA
*
78459804 ATTGGTTTGTACTAATTTTCTTCTA
1 ATTGGTTTGTACTAATTTTCATCTA
78459829 A
1 A
78459830 CGCCACCCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (25 bp):
ATTGGTTTGTACTAATTTTCATCTA
Found at i:78462986 original size:30 final size:30
Alignment explanation
Indices: 78462952--78463023 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
78462942 GTTTAGGGGT
*
78462952 AAAATGGTCATTATGTGAAAGTCTAGGGAC
1 AAAATGGTCATTATGTGAAAGTCTAGGGAA
78462982 AAAATGGTCATTATGTGAAAGTCTAGGGAA
1 AAAATGGTCATTATGTGAAAGTCTAGGGAA
78463012 AAAATGGTCATT
1 AAAATGGTCATT
78463024 TTGCCCAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
AAAATGGTCATTATGTGAAAGTCTAGGGAA
Found at i:78463511 original size:46 final size:46
Alignment explanation
Indices: 78463405--78463535 Score: 149
Period size: 46 Copynumber: 2.8 Consensus size: 46
78463395 CCATATTATG
* *
78463405 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAATGAGACA
1 AGAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCAATGAGACA
* **
78463453 AGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGA-A-A
1 AGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCAATGAGACA
* *
78463497 TGTAAGCCAGTGTAAGACATGTTTGGGGCATGCATCGGC
1 AG--AGCCAGTGTAAGACATGTTTGGGACATGCATCGGC
78463536 TACAAGATAT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
44 2 0.03
45 1 0.01
46 43 0.59
47 13 0.18
48 14 0.19
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCAATGAGACA
Found at i:78463578 original size:46 final size:46
Alignment explanation
Indices: 78463410--78463629 Score: 184
Period size: 48 Copynumber: 4.7 Consensus size: 46
78463400 TTATGAGAGC
* * * ** * *
78463410 CAGTGTAAGACCATGTCTGGGACATGGCATCGACAATGAGACAAGAG
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCTACAAGATAAG-T
*
78463457 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTTGA-AATG-TAAGC
1 C-AGTGTAAGACCATGTTTGGGACATGGCATCGG-C-T-ACAA-GATAAGT
* *
78463504 CAGTGTAAGA-CATGTTTGGGGCAT-GCATCGGCTACAAGATATGT
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCTACAAGATAAGT
* ***
78463548 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-TACGTATAGAGGTGT
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCTAC--A-AGATAAGT
78463596 CAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGC
78463630 ACGGATATGT
Statistics
Matches: 146, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
43 2 0.01
44 16 0.11
45 16 0.11
46 42 0.29
47 17 0.12
48 51 0.35
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCGGCTACAAGATAAGT
Found at i:78469459 original size:5 final size:5
Alignment explanation
Indices: 78469449--78469501 Score: 52
Period size: 5 Copynumber: 9.8 Consensus size: 5
78469439 AATAAACAAA
* *
78469449 AAAAT AAAAT AAAAT AAAAT AAAAACT AAAATTT TAAAT AAAAG AAAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAA-T AAAA--T AAAAT AAAAT AAAAT
78469498 AAAA
1 AAAA
78469502 GATATGGACT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 27 0.68
6 8 0.20
7 5 0.12
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:78469465 original size:22 final size:23
Alignment explanation
Indices: 78469431--78469480 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
78469421 AAGTCTTAGG
78469431 AAAATACAAATAAACA-AAAAAAT
1 AAAATACAAATAAA-ATAAAAAAT
*
78469454 AAAATA-AAATAAAATAAAAACT
1 AAAATACAAATAAAATAAAAAAT
78469476 AAAAT
1 AAAAT
78469481 TTTAAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.72
23 6 0.24
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (23 bp):
AAAATACAAATAAAATAAAAAAT
Found at i:78471015 original size:16 final size:17
Alignment explanation
Indices: 78470994--78471026 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
78470984 TTAGCCAAGC
78470994 AATAATAAACAA-AAGT
1 AATAATAAACAATAAGT
78471010 AATAATAAACAATAAGT
1 AATAATAAACAATAAGT
78471027 TAGCAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (17 bp):
AATAATAAACAATAAGT
Found at i:78471103 original size:17 final size:19
Alignment explanation
Indices: 78471059--78471116 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
78471049 AGAAAACAAC
78471059 AATAAATAAATAGTAAAAT
1 AATAAATAAATAGTAAAAT
* *
78471078 AAGATATAAAT-G-AAAAT
1 AATAAATAAATAGTAAAAT
*
78471095 AATAAATAAATAATACAAAT
1 AATAAATAAATAGTA-AAAT
78471115 AA
1 AA
78471117 AGAATAATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 14 0.45
18 1 0.03
19 10 0.32
20 6 0.19
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (19 bp):
AATAAATAAATAGTAAAAT
Found at i:78473197 original size:16 final size:16
Alignment explanation
Indices: 78473155--78473188 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
78473145 AAGAAATGGT
*
78473155 AAAATAAGAAGTAAATA
1 AAAATAATAA-TAAATA
78473172 AAAATAATAATAAATA
1 AAAATAATAATAAATA
78473188 A
1 A
78473189 TACTAATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (16 bp):
AAAATAATAATAAATA
Found at i:78475523 original size:53 final size:53
Alignment explanation
Indices: 78475461--78475931 Score: 406
Period size: 53 Copynumber: 8.9 Consensus size: 53
78475451 TTTTCCTTTT
* * * * *
78475461 TGAACTTACCATTGCCATGTCGTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
* *
78475514 TGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTA
1 TGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTA
* * * * * ** * *
78475567 CAGTAACTCATCAATTCCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTA
1 -TG-AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
* *
78475622 TAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTG-----
1 T-GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
*** *
78475671 T--A-TTACCAAATGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTA
1 TGAACTTACC-AATGCCATG--CCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
* * *
78475723 TGAACTCAACAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGTCTTA
1 TGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
* * * * *
78475776 TGAACTCAACAATGCCATGCATTGGCATGGTCTTACATGG-AACCTTTGCGTTA
1 TGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTA
* * * * * * *
78475829 TAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCTTTGCCTTA
1 T-G-AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
* * *
78475884 TAGAACTTATCAATGGCATGCCTTGGCATGGTCTTACATGATATCCTT
1 T-GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
78475932 ATCTTAGTGC
Statistics
Matches: 343, Mismatches: 54, Indels: 41
0.78 0.12 0.09
Matches are distributed among these distances:
45 4 0.01
46 10 0.03
47 22 0.06
48 2 0.01
49 1 0.00
52 8 0.02
53 117 0.34
54 91 0.27
55 85 0.25
56 3 0.01
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
TGAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTA
Found at i:78475756 original size:100 final size:102
Alignment explanation
Indices: 78475485--78475871 Score: 356
Period size: 108 Copynumber: 3.7 Consensus size: 102
78475475 CCATGTCGTG
* *
78475485 ACATGGTCTTACGTGGTATCCTTGCCTTATGAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTTAACAATGCCATGCCTTGGCATGGTCTTAC
* ** * **
78475550 ATGGGACCTTTTCCTTACAGTAACTCATCAATTCCATGTCTTA
66 AT--GA---TATCCTTGTAGTAACTCA-CAATGCCATGTCCAA
* * *
78475593 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTTAACAATGCCATGCCTTGGCATGGTCTTA
*
78475658 CATGATATCCTTGTA-TTAC-CA-AATGCCATGTTCCAA
65 CATGATATCCTTGTAGTAACTCACAATGCCATG-TCCAA
* *
78475694 ACATGGTCTTACATGGTATCCTTGTCTTATGAACTCAACAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGCCTTATGAACTTAACAATGCCATGCCTTGGCATGGTCTTAC
* *
78475759 ATGGTATCCTTGTCTTA-TGAACTCAACAATGCCATG--CATTG
66 ATGATATCCTTG---TAGT-AACTC-ACAATGCCATGTCCA--A
* * * * * * *
78475800 GCATGGTCTTACATGG-AACCTTTGCGTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCT
1 ACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AACTTAACAATGCCATGCCTTGGCATGGTCT
78475864 TACATGAT
63 TACATGAT
78475872 TTCTTTGCCT
Statistics
Matches: 238, Mismatches: 27, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
100 52 0.22
101 30 0.13
102 2 0.01
103 6 0.03
104 11 0.05
105 4 0.02
106 23 0.10
107 12 0.05
108 62 0.26
109 36 0.15
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (102 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATGAACTTAACAATGCCATGCCTTGGCATGGTCTTAC
ATGATATCCTTGTAGTAACTCACAATGCCATGTCCAA
Found at i:78476026 original size:47 final size:45
Alignment explanation
Indices: 78475960--78476061 Score: 125
Period size: 45 Copynumber: 2.2 Consensus size: 45
78475950 CATCTTGATG
* * *
78475960 TGGTCTTACATGGAGTCCTTAATCAATACCGATGCCATGTCTTGACA
1 TGGTCTTACAAGGAGTCCTT--GCAATACCAATGCCATGTCTTGACA
**
78476007 TGGTCTTACACAGGA-TCCTTGCCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACA-AGGAGTCCTTGCAATACCAATGCCATGTCTTGACA
78476052 TGGTCTTACA
1 TGGTCTTACA
78476062 TGGTATCCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 31 0.63
47 15 0.31
48 3 0.06
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (45 bp):
TGGTCTTACAAGGAGTCCTTGCAATACCAATGCCATGTCTTGACA
Found at i:78477924 original size:21 final size:21
Alignment explanation
Indices: 78477900--78477944 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
78477890 AATTTGTTGG
*
78477900 TAATGTGTTGGTTTTATTGTC
1 TAATGTGTTGGTTTTAGTGTC
78477921 TAATGTGTTGGTTTTAGTGTC
1 TAATGTGTTGGTTTTAGTGTC
78477942 TAA
1 TAA
78477945 CATGTTTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.53
Consensus pattern (21 bp):
TAATGTGTTGGTTTTAGTGTC
Found at i:78477950 original size:21 final size:21
Alignment explanation
Indices: 78477905--78477950 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
78477895 GTTGGTAATG
* **
78477905 TGTTGGTTTTATTGTCTAATG
1 TGTTGGTTTTAGTGTCTAACA
78477926 TGTTGGTTTTAGTGTCTAACA
1 TGTTGGTTTTAGTGTCTAACA
78477947 TGTT
1 TGTT
78477951 TGAGCATAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.07, G:0.24, T:0.54
Consensus pattern (21 bp):
TGTTGGTTTTAGTGTCTAACA
Found at i:78487911 original size:102 final size:102
Alignment explanation
Indices: 78487731--78487915 Score: 273
Period size: 102 Copynumber: 1.8 Consensus size: 102
78487721 GATACAAATG
* * * *
78487731 ACTCAGAACGGAAAGACTCTTGTTGGGTATGAATGGAATGAATTACATACCAAAAACGATCCGTT
1 ACTCAGAACAGAAAGACTCTTGTTAGGTATGAATAGAATGAATTACATAACAAAAACGATCCGTT
*
78487796 TAAAATTATGAGACATAGTCTTTCATAACAAACCTCA
66 TAAAATTACGAGACATAGTCTTTCATAACAAACCTCA
* *
78487833 ACTCAGAACAGAAAGACTCTTGTTAGGTATGAATAGAATGAATTACATAAGAAAAATGATCCGTT
1 ACTCAGAACAGAAAGACTCTTGTTAGGTATGAATAGAATGAATTACATAACAAAAACGATCCGTT
* *
78487898 T-GAATCTGCGAGACATAG
66 TAAAAT-TACGAGACATAG
78487916 ACTCTTGTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 3 0.04
102 70 0.96
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (102 bp):
ACTCAGAACAGAAAGACTCTTGTTAGGTATGAATAGAATGAATTACATAACAAAAACGATCCGTT
TAAAATTACGAGACATAGTCTTTCATAACAAACCTCA
Found at i:78492828 original size:27 final size:27
Alignment explanation
Indices: 78492752--78492829 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
78492742 AAACATACAT
* * *
78492752 CACATAAGGCCAAAACAGTCATCTGAG
1 CACATAAGGGCAAAACAGTCATTTGAC
* * * *
78492779 CATATAAGGGCAATATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTGAC
78492806 CACATAAGGGCAAAACAGTCATTT
1 CACATAAGGGCAAAACAGTCATTT
78492830 CATCAAATTG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTGAC
Found at i:78492972 original size:17 final size:17
Alignment explanation
Indices: 78492939--78492976 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
78492929 AAGCCTATAA
78492939 CACAGCCCATGTGGGCC
1 CACAGCCCATGTGGGCC
*
78492956 CACATGCCCGTGT-GGCC
1 CACA-GCCCATGTGGGCC
78492973 CACA
1 CACA
78492977 AAGCCCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.18, C:0.42, G:0.26, T:0.13
Consensus pattern (17 bp):
CACAGCCCATGTGGGCC
Found at i:78492982 original size:18 final size:18
Alignment explanation
Indices: 78492942--78492983 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
78492932 CCTATAACAC
78492942 AGCCCATGTGGGCCCACA
1 AGCCCATGTGGGCCCACA
* *
78492960 TGCCCGTGT-GGCCCACAA
1 AGCCCATGTGGGCCCAC-A
78492978 AGCCCA
1 AGCCCA
78492984 AAAGTGGCCT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.21, C:0.40, G:0.26, T:0.12
Consensus pattern (18 bp):
AGCCCATGTGGGCCCACA
Found at i:78494642 original size:13 final size:13
Alignment explanation
Indices: 78494624--78494651 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78494614 TTTGCACCTG
78494624 CCCAGACTTGAAC
1 CCCAGACTTGAAC
78494637 CCCAGACTTGAAC
1 CCCAGACTTGAAC
78494650 CC
1 CC
78494652 ATATTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.43, G:0.14, T:0.14
Consensus pattern (13 bp):
CCCAGACTTGAAC
Found at i:78495336 original size:20 final size:21
Alignment explanation
Indices: 78495297--78495336 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
78495287 GTTATAATGA
*
78495297 CCACATGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
78495318 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
78495337 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:78501631 original size:47 final size:45
Alignment explanation
Indices: 78501563--78501922 Score: 164
Period size: 47 Copynumber: 7.6 Consensus size: 45
78501553 TTTGTGTGCT
78501563 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGAGCC
* *
78501609 AGTGTAAGTACATGTCTGGGACATGGCATTGG--CATTGAGGTGAGAGCA
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCCATT-A--TGAGAGCC
* * * *
78501657 AGTGTAAGACATGTTTGGAACATGCATCAGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATG-AGAGCC
* * * ** * *
78501703 AGTGTAAGACATGTCTTGGACATGCATCAG-CTACGA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGA-GAGCC
* ** * *
78501747 AGTGTAAGACCATGTCTGGGACATGGCATCGATACAGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG--GCCCAT-TATGAGAGCC
* * * * * *
78501797 AGTGTAAGACCATGTTTGGTACATGGCATCGGCCTTGATT-TCTATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCC--CATTAT-GAGAGCC
* * *
78501846 AATGTAAGACCATGTCTGGGACATGGCATC-G-AC-TTGATGGATGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-AT-GA-GAGCC
78501893 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
78501923 AGCACTATAC
Statistics
Matches: 244, Mismatches: 44, Indels: 51
0.72 0.13 0.15
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 15 0.06
45 18 0.07
46 53 0.22
47 60 0.25
48 25 0.10
49 33 0.14
50 35 0.14
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGAGCC
Found at i:78501713 original size:46 final size:46
Alignment explanation
Indices: 78501563--78501925 Score: 206
Period size: 46 Copynumber: 7.7 Consensus size: 46
78501553 TTTGTGTGCT
* * *
78501563 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGAGAGCC
** * * * *
78501609 AGTGTAAGTACATGTCTGGGACATGGCATTGGCATTGAGGTGAGAGCA
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCAGCCTCGAGATGAGAGCC
* *
78501657 AGTGTAAGACATGTTTGGAACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATG-AGAGCC
* * *
78501703 AGTGTAAGACATGTCTTGGACATGCATCAG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGAGAGCC
* * *
78501747 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ATACAGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCT-C-GAGA--TGAGAGCC
* * * * ** * * *
78501797 AGTGTAAGACCATGTTTGGTACATGGCATCGGCCTTGATTTCTATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGAT-GAGAGCC
* * * *
78501846 AATGTAAGACCATGTCTGGGACATGGCATC-GACT--TGATGGATGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGAT-GA-GAGCC
78501893 AGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
78501926 ACTATACCGT
Statistics
Matches: 250, Mismatches: 49, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
44 11 0.04
45 19 0.08
46 66 0.26
47 60 0.24
48 28 0.11
49 31 0.12
50 33 0.13
51 1 0.00
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGAGAGCC
Found at i:78507661 original size:42 final size:42
Alignment explanation
Indices: 78507608--78507732 Score: 157
Period size: 42 Copynumber: 3.0 Consensus size: 42
78507598 ACCGGGATGT
78507608 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
1 GATTT-GTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
* **
78507651 GATTTGTGTAAGACCATGTTTGGGACATTGGTGTCGATATGA
1 GATTTGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
*
78507693 GATTCGTGTAAGA-C-TGTAGCTGGG-CTATTGGCATCGATAT
1 GATTTGTGTAAGACCATGT--CTGGGAC-ATTGGCATCGATAT
78507733 ACTATAACAT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 3 0.04
41 2 0.03
42 62 0.86
43 5 0.07
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.33
Consensus pattern (42 bp):
GATTTGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
Found at i:78514734 original size:118 final size:119
Alignment explanation
Indices: 78514553--78514774 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 119
78514543 TCCTCGTTCA
*
78514553 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
78514618 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
78514672 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
78514734 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
78514775 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.73
119 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:78514774 original size:40 final size:40
Alignment explanation
Indices: 78514551--78514774 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
78514541 GCTCCTCGTT
* *
78514551 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
78514591 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
78514631 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
78514671 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
78514709 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
78514750 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78514775 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 24 0.15
39 21 0.13
40 107 0.65
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:78522605 original size:119 final size:120
Alignment explanation
Indices: 78522421--78522645 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
78522411 GCTCCTCGTT
*
78522421 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
78522486 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
78522541 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
78522603 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
78522646 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:78522645 original size:40 final size:40
Alignment explanation
Indices: 78522421--78522645 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
78522411 GCTCCTCGTT
* *
78522421 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
78522461 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
78522501 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
78522541 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
78522580 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
78522621 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78522646 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:78524457 original size:17 final size:15
Alignment explanation
Indices: 78524427--78524464 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 15
78524417 TATAACCCTT
78524427 TCATTCCCTCATTCA
1 TCATTCCCTCATTCA
78524442 TCATTCCTCATCATTCA
1 TCATTCC-C-TCATTCA
78524459 TCATTC
1 TCATTC
78524465 TCTCTTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.33
16 1 0.05
17 13 0.62
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (15 bp):
TCATTCCCTCATTCA
Found at i:78528260 original size:12 final size:12
Alignment explanation
Indices: 78528245--78528270 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78528235 CACTCTCCCC
78528245 AAAATCACTCCT
1 AAAATCACTCCT
78528257 AAAATCACTCCT
1 AAAATCACTCCT
78528269 AA
1 AA
78528271 GATCGCTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAATCACTCCT
Found at i:78535852 original size:13 final size:12
Alignment explanation
Indices: 78535820--78535846 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
78535810 ATCCATTCTC
78535820 CCTAAAATCACT
1 CCTAAAATCACT
78535832 CCTAAAATCACT
1 CCTAAAATCACT
78535844 CCT
1 CCT
78535847 CCAAATCCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (12 bp):
CCTAAAATCACT
Found at i:78541448 original size:5 final size:5
Alignment explanation
Indices: 78541438--78541515 Score: 54
Period size: 6 Copynumber: 14.8 Consensus size: 5
78541428 TATGTCTTTC
* *
78541438 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAG AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT AAAAT
78541485 AAAAAT AAAAT AAAAAT AAAACT -AAAT AAAA
1 -AAAAT AAAAT -AAAAT AAAA-T AAAAT AAAA
78541516 AAATAGGAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
3 3 0.05
4 1 0.02
5 27 0.46
6 28 0.47
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:78541467 original size:6 final size:6
Alignment explanation
Indices: 78541458--78541520 Score: 60
Period size: 6 Copynumber: 10.8 Consensus size: 6
78541448 AATAAAATTG
* * *
78541458 AAATGA AAATAA AAATCA AAA-GA AAATAA AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
78541504 AACTAA ATAA-AA AAATA
1 AAATAA A-AATAA AAATA
78541521 GGAGGATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
5 11 0.23
6 35 0.74
7 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:78541470 original size:17 final size:17
Alignment explanation
Indices: 78541448--78541510 Score: 74
Period size: 17 Copynumber: 3.7 Consensus size: 17
78541438 AAAATAAAAT
* *
78541448 AATAAAATTGAAATGAA
1 AATAAAAATAAAATGAA
78541465 AATAAAAATCAAAA-GAA
1 AATAAAAAT-AAAATGAA
*
78541482 AATAAAAATAAAATAAA
1 AATAAAAATAAAATGAA
*
78541499 AATAAAACTAAA
1 AATAAAAATAAA
78541511 TAAAAAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
16 4 0.10
17 33 0.82
18 3 0.08
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (17 bp):
AATAAAAATAAAATGAA
Found at i:78541489 original size:11 final size:11
Alignment explanation
Indices: 78541438--78541520 Score: 67
Period size: 11 Copynumber: 7.0 Consensus size: 11
78541428 TATGTCTTTC
78541438 AAAATAAAATAA
1 AAAATAAAAT-A
* *
78541450 TAAAATTGAAATG
1 -AAAA-TAAAATA
*
78541463 AAAATAAAAATC
1 AAAAT-AAAATA
*
78541475 AAAAGAAAATA
1 AAAATAAAATA
78541486 AAAATAAAATA
1 AAAATAAAATA
78541497 AAAATAAAACTA
1 AAAATAAAA-TA
*
78541509 AATAAAAAAATA
1 AA-AATAAAATA
78541521 GGAGGATTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
11 25 0.43
12 18 0.31
13 10 0.17
14 5 0.09
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:78541516 original size:17 final size:18
Alignment explanation
Indices: 78541439--78541517 Score: 67
Period size: 17 Copynumber: 4.6 Consensus size: 18
78541429 ATGTCTTTCA
* *
78541439 AAATAAAATAATAAAATTG
1 AAATAAAA-AATAAAAATC
*
78541458 AAAT-GAAAATAAAAATC
1 AAATAAAAAATAAAAATC
* *
78541475 AAA-AGAAAATAAAAATA
1 AAATAAAAAATAAAAATC
*
78541492 AAAT-AAAAATAAAACT-
1 AAATAAAAAATAAAAATC
78541508 AAATAAAAAA
1 AAATAAAAAA
78541518 ATAGGAGGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
16 4 0.08
17 41 0.80
18 2 0.04
19 4 0.08
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.18
Consensus pattern (18 bp):
AAATAAAAAATAAAAATC
Found at i:78546907 original size:13 final size:13
Alignment explanation
Indices: 78546889--78546913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78546879 GGCTTGTTTA
78546889 TTAAACTAATTAT
1 TTAAACTAATTAT
78546902 TTAAACTAATTA
1 TTAAACTAATTA
78546914 ACTGATTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:78548436 original size:81 final size:81
Alignment explanation
Indices: 78548273--78548627 Score: 244
Period size: 81 Copynumber: 4.4 Consensus size: 81
78548263 GCCGAAATGG
* * * *
78548273 TGACTGAAATACCCCGTAT--AGTAAAATGACCAAAATACCCCCATAGAA-TAAAATGACTA-AA
1 TGACCGAAATACCCC-TATAGAGTAAAATGACTAAAATACCCTCATA-AAGTAAAATAAC-AGAA
** *
78548334 ATACCCA-CATATTGTATAA
63 ATA-CCATCATAAAGTAAAA
*
78548353 TGACCAAAATA-CCCTCATAGAGTAAAATGACTAAAATACCCTCATAAAGTAAAATAATC-GAAA
1 TGACCGAAATACCCCT-ATAGAGTAAAATGACTAAAATACCCTCATAAAGTAAAATAA-CAGAAA
**
78548416 TACCATCATAGGGTAAAA
64 TACCATCATAAAGTAAAA
* * * * * **
78548434 TGACTGAAATACCCCTATAGGGTAAAAT-AATCGAAATATCCC-CGTAGGGTAAAATAACAGAAA
1 TGACCGAAATACCCCTATAGAGTAAAATGACT-AAAATA-CCCTCATAAAGTAAAATAACAGAAA
*
78548497 TACCCTCATAAAGTAAAA
64 TACCATCATAAAGTAAAA
* * ** ** ** * *
78548515 TAACCGAAATACCCCTATAAAGTAAAATGACTGTAATACCCTTGTAGGGTAAAATGACCGAAATA
1 TGACCGAAATACCCCTATAGAGTAAAATGACTAAAATACCCTCATAAAGTAAAATAACAGAAATA
* * *
78548580 TCC-TTATAAGGGAAAA
66 -CCATCATAAAGTAAAA
* * * *
78548596 TGACTGTAATACCCCTGTAAAGTAAAATGACT
1 TGACCGAAATACCCCTATAGAGTAAAATGACT
78548628 GATTTTCCCT
Statistics
Matches: 226, Mismatches: 35, Indels: 27
0.78 0.12 0.09
Matches are distributed among these distances:
78 1 0.00
79 5 0.02
80 20 0.09
81 188 0.83
82 12 0.05
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (81 bp):
TGACCGAAATACCCCTATAGAGTAAAATGACTAAAATACCCTCATAAAGTAAAATAACAGAAATA
CCATCATAAAGTAAAA
Found at i:78548552 original size:27 final size:27
Alignment explanation
Indices: 78548273--78548629 Score: 214
Period size: 27 Copynumber: 13.3 Consensus size: 27
78548263 GCCGAAATGG
78548273 TGACTGAAATACCCCGTAT--AGTAAAA
1 TGACTGAAATACCCC-TATAAAGTAAAA
** *
78548299 TGACCAAAATACCCCCATAGAA-TAAAA
1 TGACTGAAATACCCCTATA-AAGTAAAA
* ** *
78548326 TGACTAAAATACCCAC-ATATTGTATAA
1 TGACTGAAATACCC-CTATAAAGTAAAA
** *
78548353 TGACCAAAATA-CCCTCATAGAGTAAAA
1 TGACTGAAATACCCCT-ATAAAGTAAAA
*
78548380 TGACTAAAATA-CCCTCATAAAGTAAAA
1 TGACTGAAATACCCCT-ATAAAGTAAAA
* * **
78548407 T-AATCGAAATA-CCATCATAGGGTAAAA
1 TGACT-GAAATACCCCT-ATAAAGTAAAA
**
78548434 TGACTGAAATACCCCTATAGGGTAAAA
1 TGACTGAAATACCCCTATAAAGTAAAA
* * **
78548461 T-AATCGAAATATCCCC-GTAGGGTAAAA
1 TGACT-GAAATA-CCCCTATAAAGTAAAA
* *
78548488 TAACAGAAATA-CCCTCATAAAGTAAAA
1 TGACTGAAATACCCCT-ATAAAGTAAAA
* *
78548515 TAACCGAAATACCCCTATAAAGTAAAA
1 TGACTGAAATACCCCTATAAAGTAAAA
* * * **
78548542 TGACTGTAATACCCTTGTAGGGTAAAA
1 TGACTGAAATACCCCTATAAAGTAAAA
* * * * *
78548569 TGACCGAAATATCCTTATAAGGGAAAA
1 TGACTGAAATACCCCTATAAAGTAAAA
* *
78548596 TGACTGTAATACCCCTGTAAAGTAAAA
1 TGACTGAAATACCCCTATAAAGTAAAA
78548623 TGACTGA
1 TGACTGA
78548630 TTTTCCCTAC
Statistics
Matches: 266, Mismatches: 49, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
25 6 0.02
26 19 0.07
27 225 0.85
28 16 0.06
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.22
Consensus pattern (27 bp):
TGACTGAAATACCCCTATAAAGTAAAA
Found at i:78548626 original size:54 final size:54
Alignment explanation
Indices: 78548273--78548623 Score: 270
Period size: 54 Copynumber: 6.5 Consensus size: 54
78548263 GCCGAAATGG
* * * **
78548273 TGACTGAAATACCCCGTAT--AGTAAAATGACCAAAATACCCCCATAGAATAAAA
1 TGACTGAAATACCCC-TATAAAGTAAAATAACCGAAATATCCCCATAGGGTAAAA
* ** * * * *
78548326 TGACTAAAATACCCAC-ATATTGTATAATGACCAAAATA-CCCTCATAGAGTAAAA
1 TGACTGAAATACCC-CTATAAAGTAAAATAACCGAAATATCCC-CATAGGGTAAAA
* * *
78548380 TGACTAAAATA-CCCTCATAAAGTAAAATAATCGAAATA-CCATCATAGGGTAAAA
1 TGACTGAAATACCCCT-ATAAAGTAAAATAACCGAAATATCC-CCATAGGGTAAAA
** * *
78548434 TGACTGAAATACCCCTATAGGGTAAAATAATCGAAATATCCCCGTAGGGTAAAA
1 TGACTGAAATACCCCTATAAAGTAAAATAACCGAAATATCCCCATAGGGTAAAA
* * **
78548488 TAACAGAAATA-CCCTCATAAAGTAAAATAACCGAAATA-CCCCTATAAAGTAAAA
1 TGACTGAAATACCCCT-ATAAAGTAAAATAACCGAAATATCCCC-ATAGGGTAAAA
* * * ** * **
78548542 TGACTGTAATACCCTTGTAGGGTAAAATGACCGAAATATCCTTATAAGGG-AAAA
1 TGACTGAAATACCCCTATAAAGTAAAATAACCGAAATATCCCCAT-AGGGTAAAA
* *
78548596 TGACTGTAATACCCCTGTAAAGTAAAAT
1 TGACTGAAATACCCCTATAAAGTAAAAT
78548624 GACTGATTTT
Statistics
Matches: 244, Mismatches: 40, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
52 3 0.01
53 26 0.11
54 202 0.83
55 13 0.05
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (54 bp):
TGACTGAAATACCCCTATAAAGTAAAATAACCGAAATATCCCCATAGGGTAAAA
Found at i:78548628 original size:81 final size:80
Alignment explanation
Indices: 78548359--78548629 Score: 271
Period size: 81 Copynumber: 3.4 Consensus size: 80
78548349 ATAATGACCA
* * * ** *
78548359 AAATA-CCCTCATAGAGTAAAATGACTAAAATACCCTCATAAAGTAAAATAATCGAAATACCATC
1 AAATACCCCT-ATAAAGTAAAATGACTGAAATACCCTCGTAGGGTAAAATAACCGAAATACC-TC
78548423 AT-AGGGTAAAATGACTG
64 ATAAGGG-AAAATGACTG
** * *
78548440 AAATACCCCTATAGGGTAAAAT-AATCGAAATATCCC-CGTAGGGTAAAATAACAGAAATACCCT
1 AAATACCCCTATAAAGTAAAATGACT-GAAATA-CCCTCGTAGGGTAAAATAACCGAAATA-CCT
* * * *
78548503 CATAAAGTAAAATAACCG
63 CATAAGGGAAAATGACTG
* * * *
78548521 AAATACCCCTATAAAGTAAAATGACTGTAATACCCTTGTAGGGTAAAATGACCGAAATATCCTTA
1 AAATACCCCTATAAAGTAAAATGACTGAAATACCCTCGTAGGGTAAAATAACCGAAATA-CCTCA
78548586 TAAGGGAAAATGACTG
65 TAAGGGAAAATGACTG
* *
78548602 TAATACCCCTGTAAAGTAAAATGACTGA
1 AAATACCCCTATAAAGTAAAATGACTGA
78548630 TTTTCCCTAC
Statistics
Matches: 155, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
80 5 0.03
81 137 0.88
82 13 0.08
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (80 bp):
AAATACCCCTATAAAGTAAAATGACTGAAATACCCTCGTAGGGTAAAATAACCGAAATACCTCAT
AAGGGAAAATGACTG
Found at i:78548981 original size:22 final size:23
Alignment explanation
Indices: 78548956--78548998 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
78548946 TAGCCCCACA
78548956 TGGTGTATAG-GGCTGGATGGAG
1 TGGTGTATAGAGGCTGGATGGAG
*
78548978 TGGTGTGTAGAGGCTGGATGG
1 TGGTGTATAGAGGCTGGATGG
78548999 GTAGCATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.16, C:0.05, G:0.51, T:0.28
Consensus pattern (23 bp):
TGGTGTATAGAGGCTGGATGGAG
Found at i:78554058 original size:20 final size:22
Alignment explanation
Indices: 78554021--78554061 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
78554011 AGCACTAACA
78554021 TATTTTGATTTCTTTATTTCTT
1 TATTTTGATTTCTTTATTTCTT
78554043 TATTTT-ATTT-TTTATTTCT
1 TATTTTGATTTCTTTATTTCT
78554062 AACACTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 4 0.21
22 6 0.32
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (22 bp):
TATTTTGATTTCTTTATTTCTT
Found at i:78556298 original size:6 final size:6
Alignment explanation
Indices: 78556287--78556326 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
78556277 TCCTCTTATC
* * *
78556287 TTTTTA TTTTTA TTTTTA TTTTTG TTCTTA TTTTTC TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
78556327 CATTACAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:78559289 original size:22 final size:23
Alignment explanation
Indices: 78559244--78559285 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
78559234 AAATTTTCTC
78559244 TTTGCTTTAGTTTAATCAGTTAA
1 TTTGCTTTAGTTTAATCAGTTAA
*
78559267 TTTG-TTTAG-TTAATTAGTT
1 TTTGCTTTAGTTTAATCAGTT
78559286 TAATAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.57
Consensus pattern (23 bp):
TTTGCTTTAGTTTAATCAGTTAA
Found at i:78559581 original size:24 final size:24
Alignment explanation
Indices: 78559554--78559601 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
78559544 TAGTAGAGTG
78559554 AACTGAAACTGTAGTAAACTGGTA
1 AACTGAAACTGTAGTAAACTGGTA
*
78559578 AACTGAAACTGTAGTAAATTGGTA
1 AACTGAAACTGTAGTAAACTGGTA
78559602 GTCACCGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (24 bp):
AACTGAAACTGTAGTAAACTGGTA
Found at i:78561857 original size:27 final size:27
Alignment explanation
Indices: 78561723--78561859 Score: 168
Period size: 27 Copynumber: 5.1 Consensus size: 27
78561713 AATGGTGATC
*
78561723 GAAATA-CCCTCATAGGGTAAAATGACC
1 GAAATACCCCT-ATAGGGTAAAATGACT
* *
78561750 GAAATACCCCCATAGGGTAAAATGACC
1 GAAATACCCCTATAGGGTAAAATGACT
* *
78561777 GAAATACCCCTATAAGGAAAAATGACT
1 GAAATACCCCTATAGGGTAAAATGACT
* * *
78561804 GTAATACCCCTGTAGGGAAAAATGACT
1 GAAATACCCCTATAGGGTAAAATGACT
* *
78561831 GTAATACCCCTATAAGGTAAAATGACT
1 GAAATACCCCTATAGGGTAAAATGACT
78561858 GA
1 GA
78561860 TTTTCCCTAT
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 94 0.97
28 3 0.03
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
GAAATACCCCTATAGGGTAAAATGACT
Found at i:78572822 original size:21 final size:20
Alignment explanation
Indices: 78572794--78572833 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
78572784 CAAAACTTGT
78572794 ATAACTATCATCAAA-CATTC
1 ATAACTATCAT-AAATCATTC
78572814 ATAATCTATCATAAATCATT
1 ATAA-CTATCATAAATCATT
78572834 AAAATACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATAAATCATTC
Found at i:78575014 original size:37 final size:37
Alignment explanation
Indices: 78574963--78575037 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
78574953 AATGTTAATT
78574963 TACCCCTTTCGGAATTAATTGATAAAATACCAAAATA
1 TACCCCTTTCGGAATTAATTGATAAAATACCAAAATA
* *
78575000 TACCCCTTTTGGAATTAATTGATAAAATACTAAAATA
1 TACCCCTTTCGGAATTAATTGATAAAATACCAAAATA
78575037 T
1 T
78575038 GCCAAGTACT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (37 bp):
TACCCCTTTCGGAATTAATTGATAAAATACCAAAATA
Found at i:78576101 original size:70 final size:70
Alignment explanation
Indices: 78576027--78576183 Score: 226
Period size: 71 Copynumber: 2.2 Consensus size: 70
78576017 GAACCTAAAT
*
78576027 AATTTGAAAAT-CTAGTACATATCGAGACACAGGTACCCCTTTGTTGCGACACGCAACTTTGAAG
1 AATTTGAAAATACTAGT-CATATCGAGACACAGGTACCCCTATGTTGCGACACGCAACTTTGAAG
78576091 TATTAA
65 TATTAA
* * * * * *
78576097 AATTTGAAAATACCAGGTCGTTTTGTGACACATGTACCCCTATGTTGCGACACGCAACTTTGAAG
1 AATTTGAAAATACTA-GTCATATCGAGACACAGGTACCCCTATGTTGCGACACGCAACTTTGAAG
78576162 TATTAA
65 TATTAA
78576168 AATTTGAAAATACTAG
1 AATTTGAAAATACTAG
78576184 GCTGTGTCAC
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
70 12 0.16
71 63 0.82
72 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (70 bp):
AATTTGAAAATACTAGTCATATCGAGACACAGGTACCCCTATGTTGCGACACGCAACTTTGAAGT
ATTAA
Found at i:78576217 original size:71 final size:70
Alignment explanation
Indices: 78576053--78576198 Score: 215
Period size: 71 Copynumber: 2.1 Consensus size: 70
78576043 ACATATCGAG
* *
78576053 ACACAGGTACCCCTTTGTTGCGACACGCAACTTTGAAGTATTAAAATTTGAAAATACCAGGTCGT
1 ACACATGTACCCCTATGTTGCGACACGCAACTTTGAAGTATTAAAATTTGAAAATACCAGGTCG-
* *
78576118 TTTGTG
65 TGTGTC
*
78576124 ACACATGTACCCCTATGTTGCGACACGCAACTTTGAAGTATTAAAATTTGAAAATACTAGG-C-T
1 ACACATGTACCCCTATGTTGCGACACGCAACTTTGAAGTATTAAAATTTGAAAATACCAGGTCGT
78576187 GTGTC
66 GTGTC
78576192 ACGACAT
1 AC-ACAT
78576199 AGGTTTCCTT
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
68 6 0.09
69 4 0.06
70 1 0.01
71 58 0.84
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (70 bp):
ACACATGTACCCCTATGTTGCGACACGCAACTTTGAAGTATTAAAATTTGAAAATACCAGGTCGT
GTGTC
Found at i:78580273 original size:13 final size:13
Alignment explanation
Indices: 78580236--78580294 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
78580226 ATCCCAGATG
78580236 AAGAAAAGAAAAA
1 AAGAAAAGAAAAA
* *
78580249 TGAGTAAAAAGAAAAT
1 -AAG--AAAAGAAAAA
78580265 AAGAAAAGAAAAA
1 AAGAAAAGAAAAA
*
78580278 AAGAAAATAAAAA
1 AAGAAAAGAAAAA
78580291 AAGA
1 AAGA
78580295 GATATACTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
13 25 0.66
14 2 0.05
15 2 0.05
16 9 0.24
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (13 bp):
AAGAAAAGAAAAA
Found at i:78580292 original size:21 final size:21
Alignment explanation
Indices: 78580254--78580294 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
78580244 AAAAATGAGT
*
78580254 AAAAAGAAAATAAGAAAAGAA
1 AAAAAGAAAATAAAAAAAGAA
78580275 AAAAAGAAAATAAAAAAAGA
1 AAAAAGAAAATAAAAAAAGA
78580295 GATATACTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (21 bp):
AAAAAGAAAATAAAAAAAGAA
Found at i:78580292 original size:29 final size:29
Alignment explanation
Indices: 78580236--78580292 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
78580226 ATCCCAGATG
* * *
78580236 AAGAAAAGAAAAATGAGTAAAAAGAAAAT
1 AAGAAAAGAAAAATAAGAAAAAAAAAAAT
78580265 AAGAAAAGAAAAA-AAGAAAATAAAAAAA
1 AAGAAAAGAAAAATAAGAAAA-AAAAAAA
78580293 GAGATATACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (29 bp):
AAGAAAAGAAAAATAAGAAAAAAAAAAAT
Found at i:78580869 original size:11 final size:10
Alignment explanation
Indices: 78580845--78580881 Score: 56
Period size: 11 Copynumber: 3.5 Consensus size: 10
78580835 TATCTTTGCA
78580845 TTTTTCTTTT
1 TTTTTCTTTT
78580855 TTTTTCTTTT
1 TTTTTCTTTT
78580865 GTTTTTCTTTT
1 -TTTTTCTTTT
78580876 TCTTTT
1 T-TTTT
78580882 TTGTTCGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 11 0.44
11 14 0.56
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:78583534 original size:17 final size:19
Alignment explanation
Indices: 78583512--78583546 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
78583502 CAATTCAAAT
78583512 TCAAATT-CA-TATTTTCA
1 TCAAATTACACTATTTTCA
78583529 TCAAATTACACTATTTTC
1 TCAAATTACACTATTTTC
78583547 CATTCTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (19 bp):
TCAAATTACACTATTTTCA
Found at i:78586487 original size:23 final size:24
Alignment explanation
Indices: 78586448--78586495 Score: 64
Period size: 22 Copynumber: 2.0 Consensus size: 24
78586438 TTTATTTGAT
78586448 AATATGTTTTGATATAACAAATTAA
1 AATATGTTTTGATATAA-AAATTAA
*
78586473 AATAT-TTTTGA-ATAAAAGTTAA
1 AATATGTTTTGATATAAAAATTAA
78586495 A
1 A
78586496 GTTGAACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 4 0.18
24 6 0.27
25 5 0.23
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (24 bp):
AATATGTTTTGATATAAAAATTAA
Found at i:78593956 original size:20 final size:20
Alignment explanation
Indices: 78593931--78593989 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
78593921 TAAACATGGT
*
78593931 ATGTATGATATGCATATGAC
1 ATGTATGATATGCACATGAC
* *
78593951 ATGTATGATATGCACATAAT
1 ATGTATGATATGCACATGAC
78593971 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
78593990 TGTATTCGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:78594098 original size:24 final size:24
Alignment explanation
Indices: 78594039--78594159 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
78594029 GGAGGAAGTG
78594039 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
78594063 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
78594088 TAAAAGGGCTTATGCCCCAATTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
78594112 TAAAAGGGCTT-TGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
78594135 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
78594160 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.20
24 39 0.45
25 30 0.35
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:78594388 original size:31 final size:31
Alignment explanation
Indices: 78594353--78594416 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
78594343 CGTTTACAGT
78594353 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
78594384 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
78594415 AA
1 AA
78594417 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:78600913 original size:45 final size:45
Alignment explanation
Indices: 78600814--78601030 Score: 316
Period size: 45 Copynumber: 4.9 Consensus size: 45
78600804 CTGAATTCAT
* * *
78600814 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
*
78600856 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
78600901 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
** *
78600946 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGTTCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
78600991 TCACGGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
78601031 ATACTGTGCG
Statistics
Matches: 158, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
42 11 0.07
43 16 0.10
44 5 0.03
45 125 0.79
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:78601893 original size:47 final size:47
Alignment explanation
Indices: 78601837--78601979 Score: 250
Period size: 47 Copynumber: 3.0 Consensus size: 47
78601827 AAAATTTTCT
* * *
78601837 TTAACTAAGTAACTTATCCGGAAATAATAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
*
78601884 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGAAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
78601931 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
78601978 TT
1 TT
78601980 TAAATTCAAC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:78606599 original size:20 final size:20
Alignment explanation
Indices: 78606576--78606614 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
78606566 TAAAAGAGTA
78606576 TGTTTTAAATAAGAGGTCAC
1 TGTTTTAAATAAGAGGTCAC
78606596 TGTTTTAAATAAGAGGTCA
1 TGTTTTAAATAAGAGGTCA
78606615 TCCAATAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (20 bp):
TGTTTTAAATAAGAGGTCAC
Found at i:78613383 original size:16 final size:16
Alignment explanation
Indices: 78613362--78613396 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
78613352 ACATAAAATA
* *
78613362 AAATAAAGTAAAGTAG
1 AAATAAAATAAAGAAG
78613378 AAATAAAATAAAGAAG
1 AAATAAAATAAAGAAG
78613394 AAA
1 AAA
78613397 ATTTTATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (16 bp):
AAATAAAATAAAGAAG
Found at i:78617404 original size:17 final size:16
Alignment explanation
Indices: 78617376--78617424 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 16
78617366 AGTGTGTGTT
*
78617376 TAAAAATAAAATATAA
1 TAAATATAAAATATAA
78617392 TAAATAGTAAAATAT-A
1 TAAATA-TAAAATATAA
78617408 -AAATATAAAA-ATAA
1 TAAATATAAAATATAA
78617422 TAA
1 TAA
78617425 TAACAACACA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 2 0.07
14 6 0.21
15 7 0.24
16 6 0.21
17 8 0.28
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
TAAATATAAAATATAA
Found at i:78617409 original size:7 final size:7
Alignment explanation
Indices: 78617376--78617426 Score: 52
Period size: 7 Copynumber: 7.0 Consensus size: 7
78617366 AGTGTGTGTT
78617376 TAAAA-A
1 TAAAATA
78617382 TAAAATA
1 TAAAATA
78617389 TAATAAATA
1 T-A-AAATA
78617398 GTAAAATA
1 -TAAAATA
78617406 TAAAATA
1 TAAAATA
78617413 TAAAA-A
1 TAAAATA
78617419 TAATAATA
1 TAA-AATA
78617427 ACAACACATG
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
6 9 0.23
7 16 0.41
8 7 0.18
9 6 0.15
10 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (7 bp):
TAAAATA
Found at i:78617410 original size:24 final size:22
Alignment explanation
Indices: 78617376--78617420 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 22
78617366 AGTGTGTGTT
78617376 TAAAAATAAAATATAATAAATAG
1 TAAAAATAAAATATAA-AAATAG
78617399 TAAAATATAAAATATAAAAATA
1 TAAAA-ATAAAATATAAAAATA
78617421 ATAATAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAAAATAAAATATAAAAATAG
Found at i:78617992 original size:29 final size:29
Alignment explanation
Indices: 78617945--78618006 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
78617935 TGTAATGTCG
78617945 TACATGAACTTTGATTTTG-TGTGATTTT
1 TACATGAACTTTGATTTTGATGTGATTTT
* *
78617973 ATACATGAAATTTTGA-TTTGATTTGATTTT
1 -TACATG-AACTTTGATTTTGATGTGATTTT
78618003 TACA
1 TACA
78618007 AATTACTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.27, C:0.06, G:0.15, T:0.52
Consensus pattern (29 bp):
TACATGAACTTTGATTTTGATGTGATTTT
Found at i:78618870 original size:7 final size:7
Alignment explanation
Indices: 78618858--78618882 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
78618848 ATTTAATCTC
78618858 ATTTAAA
1 ATTTAAA
78618865 ATTTAAA
1 ATTTAAA
78618872 ATTTAAA
1 ATTTAAA
78618879 ATTT
1 ATTT
78618883 TTATTTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATTTAAA
Found at i:78630083 original size:7 final size:7
Alignment explanation
Indices: 78630071--78630095 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
78630061 ATATATTTGG
78630071 ATTTAAA
1 ATTTAAA
78630078 ATTTAAA
1 ATTTAAA
78630085 ATTTAAA
1 ATTTAAA
78630092 ATTT
1 ATTT
78630096 TTTATTTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATTTAAA
Found at i:78633343 original size:58 final size:59
Alignment explanation
Indices: 78633239--78633351 Score: 158
Period size: 58 Copynumber: 1.9 Consensus size: 59
78633229 AGTGATTATC
* * *
78633239 TTAATATTAAATTTAATTTAATATTTATCTACATAAACATTCTATTATTTTAATAAGAA
1 TTAATATTAAATTTAATATAATATTTATCTACATAAACATTATATTAATTTAATAAGAA
**
78633298 TTAATATTAAA-TTAATATAATATTTATCTTGAT-AACTATTATATTAATTTAATA
1 TTAATATTAAATTTAATATAATATTTATCTACATAAAC-ATTATATTAATTTAATA
78633352 TTATAGTGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 3 0.06
58 34 0.71
59 11 0.23
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (59 bp):
TTAATATTAAATTTAATATAATATTTATCTACATAAACATTATATTAATTTAATAAGAA
Found at i:78636049 original size:18 final size:18
Alignment explanation
Indices: 78635998--78636050 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
78635988 CTCTCGTCCT
**
78635998 CTAAGGGAAATTAGAAAG
1 CTAAGGGAAAGAAGAAAG
* *
78636016 TTAAGAGG-AAGCAGAAAG
1 CTAAG-GGAAAGAAGAAAG
78636034 CTAAGGGAAAGAAGAAA
1 CTAAGGGAAAGAAGAAA
78636051 CAGACTAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 2 0.07
18 24 0.86
19 2 0.07
ACGTcount: A:0.53, C:0.06, G:0.30, T:0.11
Consensus pattern (18 bp):
CTAAGGGAAAGAAGAAAG
Found at i:78637852 original size:15 final size:17
Alignment explanation
Indices: 78637793--78637855 Score: 108
Period size: 17 Copynumber: 3.7 Consensus size: 17
78637783 TAGTACAATG
*
78637793 GGCCCACACACTTGTGT
1 GGCCCACACACCTGTGT
78637810 GGCCCACACACCTGTGT
1 GGCCCACACACCTGTGT
78637827 GGCCCACACACCTGTGT
1 GGCCCACACACCTGTGT
*
78637844 GGCCTACACACC
1 GGCCCACACACC
78637856 CAGATTGGCC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 44 1.00
ACGTcount: A:0.19, C:0.41, G:0.22, T:0.17
Consensus pattern (17 bp):
GGCCCACACACCTGTGT
Found at i:78643163 original size:59 final size:59
Alignment explanation
Indices: 78643084--78643197 Score: 151
Period size: 59 Copynumber: 1.9 Consensus size: 59
78643074 AATGATTATG
* * *
78643084 TTAATATTAAATTTAATTTAATGTTTAT-TTACATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATTTAATATTTATCTT-CATAAACATTATATTAATTTAATAAGAT
* *
78643143 TTAATATTAAATCTT-ATTTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAAT-TTAATTTAATATTTATCTTCATAAACATTATATTAATTTAATA
78643198 TTAAAGTAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 44 0.92
60 4 0.08
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.52
Consensus pattern (59 bp):
TTAATATTAAATTTAATTTAATATTTATCTTCATAAACATTATATTAATTTAATAAGAT
Found at i:78643197 original size:16 final size:16
Alignment explanation
Indices: 78643141--78643200 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
78643131 TTTTAATAAG
* *
78643141 ATTTAATATTAAATCTT
1 ATTTAATATTATAT-TA
* *
78643158 ATTTAATATTTATCTTG
1 ATTTAATA-TTATATTA
*
78643175 A-TAAATATTATATTA
1 ATTTAATATTATATTA
78643190 ATTTAATATTA
1 ATTTAATATTA
78643201 AAGTAATTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
15 7 0.21
16 13 0.38
17 10 0.29
18 4 0.12
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (16 bp):
ATTTAATATTATATTA
Found at i:78653060 original size:30 final size:30
Alignment explanation
Indices: 78653026--78653088 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
78653016 ATTTATTTTA
78653026 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
78653056 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
78653086 TTG
1 TTG
78653089 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:78654323 original size:25 final size:25
Alignment explanation
Indices: 78654271--78654328 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
78654261 CTTATTTCAT
* *
78654271 TAAATAAA-A-ATTTTAAAATATAA
1 TAAATAAATACATTTAAAAACATAA
78654294 TAAATCAAATACATTTAAAAACATAA
1 TAAAT-AAATACATTTAAAAACATAA
78654320 -AAATAAATA
1 TAAATAAATA
78654329 TTAAAACAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 5 0.17
24 8 0.27
25 5 0.17
26 12 0.40
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAATACATTTAAAAACATAA
Found at i:78654805 original size:14 final size:14
Alignment explanation
Indices: 78654786--78654823 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
78654776 GTTTGCCAGT
*
78654786 AAAATGTTTTCCGA
1 AAAATGATTTCCGA
78654800 AAAATGATTTCCGA
1 AAAATGATTTCCGA
78654814 AAAATGATTT
1 AAAATGATTT
78654824 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (14 bp):
AAAATGATTTCCGA
Found at i:78667074 original size:18 final size:18
Alignment explanation
Indices: 78667035--78667075 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
78667025 AACCCAAGGG
*
78667035 GAAGGGGAAGAAGAAGAG
1 GAAGGGGAAGAAGAAGAA
78667053 GAAGGGGAGAGAAG-AGAA
1 GAAGGGGA-AGAAGAAGAA
78667071 GAAGG
1 GAAGG
78667076 CGTCATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (18 bp):
GAAGGGGAAGAAGAAGAA
Found at i:78668889 original size:20 final size:21
Alignment explanation
Indices: 78668832--78668893 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
78668822 TATTTATTTT
78668832 AAAATAGTTTAACTTTGATTGAA
1 AAAATA-TTTAAC-TTGATTGAA
78668855 AAAATATTCTAACTTGATTGAA
1 AAAATATT-TAACTTGATTGAA
**
78668877 ACCAT-TTTAACTTGATT
1 AAAATATTTAACTTGATT
78668894 TAAAGGTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 10 0.28
21 2 0.06
22 14 0.39
23 10 0.28
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (21 bp):
AAAATATTTAACTTGATTGAA
Found at i:78670272 original size:24 final size:24
Alignment explanation
Indices: 78670208--78670276 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
78670198 AATGGAAGGT
*
78670208 TGGAGTGATTTATGGAGTG-TATCA
1 TGGAGTGATTTATGGAG-GAAATCA
*
78670232 TGGAGAGATATTA-GGAGGAAATCAA
1 TGGAGTGAT-TTATGGAGGAAATC-A
78670257 T-GAGTGATTTATGGA-GAAAT
1 TGGAGTGATTTATGGAGGAAAT
78670277 TTAAGGAGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 9 0.24
24 24 0.63
25 5 0.13
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.30
Consensus pattern (24 bp):
TGGAGTGATTTATGGAGGAAATCA
Found at i:78671242 original size:9 final size:9
Alignment explanation
Indices: 78671228--78671252 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
78671218 CTTAGACCAT
78671228 AATGGGCCG
1 AATGGGCCG
78671237 AATGGGCCG
1 AATGGGCCG
78671246 AATGGGC
1 AATGGGC
78671253 TCGCTTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.20, G:0.44, T:0.12
Consensus pattern (9 bp):
AATGGGCCG
Found at i:78671640 original size:27 final size:27
Alignment explanation
Indices: 78671594--78671655 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
78671584 ACCCCCAACT
* *
78671594 TGTAAAATTATCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCCTATAG
* * *
78671621 TGTAAAATTACCGAACTACCCCTGTAG
1 TGTAAAATTACCAAAATACCCCTATAG
*
78671648 GGTAAAAT
1 TGTAAAAT
78671656 GACTTTTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTATAG
Found at i:78673996 original size:24 final size:24
Alignment explanation
Indices: 78673933--78673996 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
78673923 ATGGGAGGTT
* *
78673933 GGAGTGATTTATGGAGTGTATCAT
1 GGAGTGATTTATGGAGTGAATCAA
*
78673957 GGAGAGATATTA-GGAG-GAAATCAA
1 GGAGTGAT-TTATGGAGTG-AATCAA
78673981 GGAGTGATTTATGGAG
1 GGAGTGATTTATGGAG
78673997 AGATTTGAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 4 0.12
24 26 0.79
25 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.36, T:0.28
Consensus pattern (24 bp):
GGAGTGATTTATGGAGTGAATCAA
Found at i:78677287 original size:20 final size:20
Alignment explanation
Indices: 78677245--78677293 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
78677235 AACTCAATAT
* *
78677245 GTATCGATATTTTTAAGAGG
1 GTATCGATAATTTTAAAAGG
* *
78677265 GTATAGATAATTTTAAAATG
1 GTATCGATAATTTTAAAAGG
78677285 GTATCGATA
1 GTATCGATA
78677294 CCAAATCAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (20 bp):
GTATCGATAATTTTAAAAGG
Found at i:78693495 original size:42 final size:43
Alignment explanation
Indices: 78693366--78693538 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 43
78693356 GACATAGGAT
* * *
78693366 TCGATATGTG-TTATCATGTAAGAACATGTCTGGGACGTTGGCA
1 TCGATATTTGATTA-CATGTAAGACCCTGTCTGGGACGTTGGCA
* * ** *
78693409 TTGACT-TATGATTTATGTGTCAA-ACCATGTCTGGGACGTTGGCA
1 TCGA-TATTTGA-TTACATGT-AAGACCCTGTCTGGGACGTTGGCA
*
78693453 TCG-TATTTGATTTCATGTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTACATGTAAGACCCTGTCTGGGAC-GTTGGCA
* *
78693495 TCGATATTTGATTACATGTAAGACCAC-GTCTAGGATGTTGGCA
1 TCGATATTTGATTACATGTAAGACC-CTGTCTGGGACGTTGGCA
78693538 T
1 T
78693539 TGTATGAGAG
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
41 2 0.02
42 28 0.26
43 44 0.42
44 27 0.25
45 5 0.05
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCCTGTCTGGGACGTTGGCA
Found at i:78694450 original size:13 final size:13
Alignment explanation
Indices: 78694410--78694443 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
78694400 CTGAACTTCC
78694410 TCACACGGGCGTG
1 TCACACGGGCGTG
78694423 TCACACGGGCGTG
1 TCACACGGGCGTG
78694436 TCACACGG
1 TCACACGG
78694444 CCATGTCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.32, G:0.35, T:0.15
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:78697293 original size:25 final size:25
Alignment explanation
Indices: 78697259--78697307 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
78697249 AAAGGGTACA
*
78697259 AACCACGGGTGCTATACCCCAATGT
1 AACCACGGGTGCCATACCCCAATGT
*
78697284 AACCACGGGTGCCATACCCTAATG
1 AACCACGGGTGCCATACCCCAATG
78697308 CAACAAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (25 bp):
AACCACGGGTGCCATACCCCAATGT
Found at i:78701468 original size:20 final size:20
Alignment explanation
Indices: 78701440--78701484 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
78701430 TTTTTTAGCT
*
78701440 TGAGTGTTAATTCCATATTC
1 TGAGAGTTAATTCCATATTC
78701460 TGAGAGTTAATTCCATATTC
1 TGAGAGTTAATTCCATATTC
78701480 TGAGA
1 TGAGA
78701485 AAAAGCTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (20 bp):
TGAGAGTTAATTCCATATTC
Found at i:78704653 original size:34 final size:34
Alignment explanation
Indices: 78704610--78704678 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
78704600 GGTACGAGTG
*
78704610 TTCGATAAATTGTCTTTGAATCCAGATGAATGCA
1 TTCGATAAATTGTCTTTGAATCCAGATAAATGCA
78704644 TTCGATAAATTGTCTTTGAATCCAGATAAATGCA
1 TTCGATAAATTGTCTTTGAATCCAGATAAATGCA
78704678 T
1 T
78704679 AAAATCTATC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (34 bp):
TTCGATAAATTGTCTTTGAATCCAGATAAATGCA
Found at i:78713042 original size:39 final size:39
Alignment explanation
Indices: 78712998--78713265 Score: 437
Period size: 39 Copynumber: 6.9 Consensus size: 39
78712988 TACCAGTACA
* ** *
78712998 AAGCCTACGGGACTTTAACCCGGATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
78713037 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
78713076 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
* * *
78713115 AAGCCTGTGGGACTTTGGCTCAGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
78713154 AAGCCTGCGGGACTTTGGCCCGGATACATTTCTAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
78713193 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
*
78713232 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
1 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCA
78713266 ATGTCTTGCA
Statistics
Matches: 212, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 212 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
Found at i:78716690 original size:27 final size:27
Alignment explanation
Indices: 78716667--78716897 Score: 255
Period size: 27 Copynumber: 8.6 Consensus size: 27
78716657 AAGTACCATT
*
78716667 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* *
78716694 GATTTACACAATTACAATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
*
78716721 GATTTATAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* * * *
78716748 AATTTATAGAATTATCATTTTATCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* **
78716775 GATTTACAAAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTC
* ** * *
78716802 GATTTATAGAATTATGATTTTACTCTT
1 GATTTACAGAATTACCATTTTACCCTC
* *
78716829 GATTTACAGAATTATCATTTTACCCTT
1 GATTTACAGAATTACCATTTTACCCTC
* * *
78716856 GATTTACAGAACTACCGTTTTACCCTT
1 GATTTACAGAATTACCATTTTACCCTC
* *
78716883 GTTTTACAAAATTAC
1 GATTTACAGAATTAC
78716898 TAAAATACCC
Statistics
Matches: 172, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 172 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
GATTTACAGAATTACCATTTTACCCTC
Found at i:78716896 original size:81 final size:81
Alignment explanation
Indices: 78716660--78716881 Score: 291
Period size: 81 Copynumber: 2.7 Consensus size: 81
78716650 ATTACCAAAG
* * * * *
78716660 TACCATTGATTTACAGAATTACCGTTTTACCCTCGATTTACACAATTACAATTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACAGTTTTACCCTCGATT
78716725 TATAGAATTACCATTT
66 TATAGAATTACCATTT
** * * *
78716741 TACCCTCAATTTATAGAATTATCATTTTATCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACAGTTTTACCCTCGATT
**
78716806 TATAGAATTATGATTT
66 TATAGAATTACCATTT
* * * * *
78716822 TACTCTTGATTTACAGAATTATCATTTTACCCTTGATTTACAGAACTACCGTTTTACCCT
1 TACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACAGTTTTACCCT
78716882 TGTTTTACAA
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 120 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACAGTTTTACCCTCGATT
TATAGAATTACCATTT
Found at i:78716916 original size:81 final size:81
Alignment explanation
Indices: 78716635--78716916 Score: 276
Period size: 81 Copynumber: 3.5 Consensus size: 81
78716625 TACTGAAATG
* * * * * *
78716635 CCCTCAATTTGTAAAATTACCAAAGTACCATTGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTA
* *
78716700 CACAATTACAATTTTA
66 CAAAATTACAGTTTTA
* ** ** * *
78716716 CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCATTTTATCCTCGATTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTA
*
78716781 CAAAATTACTGTTTTA
66 CAAAATTACAGTTTTA
* ** ** * *
78716797 CCCTCGATTTATAGAATTATGATTTTACTCTTGATTTACAGAATTATCATTTTACCCTTGATTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTA
* * *
78716862 CAGAACTACCGTTTTA
66 CAAAATTACAGTTTTA
* * * * * *
78716878 CCCTTGTTTTACAAAATTACTAAAATACCCTTGGTTTAC
1 CCCTCGATTTATAAAATTACCAAATTACCCTTGATTTAC
78716917 GAAATTACCA
Statistics
Matches: 163, Mismatches: 38, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 163 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAATTATCATTTTACCCTCGATTTA
CAAAATTACAGTTTTA
Found at i:78717043 original size:27 final size:27
Alignment explanation
Indices: 78716890--78717044 Score: 186
Period size: 27 Copynumber: 5.7 Consensus size: 27
78716880 CTTGTTTTAC
* * * **
78716890 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
* * **
78716917 GAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
78716944 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
78716971 AAAATTACTAAAATACTCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
78716998 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
78717025 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
78717045 GATTTGTGAA
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.04
27 100 0.92
28 5 0.05
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:78717051 original size:27 final size:27
Alignment explanation
Indices: 78716890--78717083 Score: 164
Period size: 27 Copynumber: 7.2 Consensus size: 27
78716880 CTTGTTTTAC
* * * **
78716890 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
* **
78716917 GAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
78716944 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* *
78716971 AAAATTACTAAAATACTCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
78716998 AAAATTACCAAAATACCCCT-AGCTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
78717025 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * * *
78717052 GAAGTTATCGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
78717079 AAAAT
1 AAAAT
78717084 GTCGAAATAC
Statistics
Matches: 138, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 7 0.05
27 126 0.91
28 5 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:78717051 original size:81 final size:80
Alignment explanation
Indices: 78716890--78717044 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 80
78716880 CTTGTTTTAC
* *
78716890 AAAATTACTAAAATACCCTTGGTTTACGAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTAGGTTTAC-AAATTACCAAAATACCCTAGATCAGTAAAATTACCAA
78716955 AATACCCCTAGTTTGT
65 AATACCCCTAGTTTGT
* * *
78716971 AAAATTACTAAAATACTCCTAGTTTGTA-AAATTACCAAAATACCCCTAGCT-TGTAAAATTACC
1 AAAATTACTAAAATAC-CCTAGGTT-TACAAATTACCAAAATA-CCCTAGATCAGTAAAATTACC
78717034 AAAATACCCCT
63 AAAATACCCCT
78717045 GATTTGTGAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
81 52 0.79
82 12 0.18
83 2 0.03
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTAGGTTTACAAATTACCAAAATACCCTAGATCAGTAAAATTACCAAA
ATACCCCTAGTTTGT
Found at i:78717066 original size:81 final size:81
Alignment explanation
Indices: 78716890--78717083 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 81
78716880 CTTGTTTTAC
* * * *** *
78716890 AAAATTACTAAAATACCCTTGGTTTACGAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACTCTAGATTTGTAAAATTACCAAAATACCCTAGATCAGTAAAATTACCAA
78716955 AATACCCCTAGTTTGT
66 AATACCCCTAGTTTGT
* *
78716971 AAAATTACTAAAATACTCCTAG-TTTGTAAAATTACCAAAATACCCCTAGCT-TGTAAAATTACC
1 AAAATTACTAAAATACT-CTAGATTTGTAAAATTACCAAAATA-CCCTAGATCAGTAAAATTACC
78717034 AAAATACCCCT-GATTTGT
64 AAAATACCCCTAG-TTTGT
* * * *
78717052 GAAGTTA-TCGAAATACTCTCGATTTGTAAAAT
1 AAAATTACT-AAAATACTCTAGATTTGTAAAAT
78717084 GTCGAAATAC
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
80 5 0.05
81 82 0.85
82 9 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACTCTAGATTTGTAAAATTACCAAAATACCCTAGATCAGTAAAATTACCAA
AATACCCCTAGTTTGT
Found at i:78717126 original size:27 final size:27
Alignment explanation
Indices: 78717087--78717408 Score: 328
Period size: 27 Copynumber: 12.0 Consensus size: 27
78717077 GTAAAATGTC
*
78717087 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
78717114 AAAATACCCCTATAGGGAAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
78717141 GAAATACTCTTG-AAGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
78717167 AAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
78717194 GAAATACCCCTATAAGATAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
*
78717220 CGAAATACCCCTGTAAGGTAGAATTA-T
1 -GAAATACCCCTGTAGGGTAGAATTACT
78717247 CGAAATACCCCTGTAGGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
78717275 GAAATAGCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
78717302 GAAATACCCATGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
** * * *
78717329 GAAATACCTTTATAAGGTAGAAAT-CT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
78717355 GAAATACCCCTATAGAGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
78717382 GAGATACCCTTGTGGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
78717409 ATTTTTCCCC
Statistics
Matches: 249, Mismatches: 42, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 42 0.17
27 206 0.83
28 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:78717649 original size:25 final size:25
Alignment explanation
Indices: 78717613--78717707 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
78717603 AGGAAGTGCT
*
78717613 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
78717638 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
78717663 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
78717688 AAAAGGGCTTTGCCGCAGTT
1 AAAAGGGCTTTGCCCCAGTT
78717708 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:78717720 original size:24 final size:25
Alignment explanation
Indices: 78717613--78717720 Score: 109
Period size: 25 Copynumber: 4.4 Consensus size: 25
78717603 AGGAAGTGCT
* *
78717613 AAAAG-GGTTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
78717637 GAAAAG-GGCTTTGCCCCAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
78717662 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
78717687 AAAA-AGGGCTTTGCCGCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
78717711 AAAAGAGGCT
1 AAAAGAGGCT
78717721 AGGCTCCTAG
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
24 16 0.21
25 60 0.79
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:78720045 original size:54 final size:54
Alignment explanation
Indices: 78719973--78720235 Score: 276
Period size: 54 Copynumber: 4.9 Consensus size: 54
78719963 TACTAAAATG
* * *** *
78719973 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* *
78720027 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* * * * *
78720081 CCCTTGATTTATAGAATTATCATTTTATCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* * * ***
78720135 CCCTCGATTTATAAAATTACCATTTTACCTTTGATTTACAGAAATATTGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* *** * * *
78720189 CCCTTGATTTACGGAATTATCGTTTTACCCTC-ATTTTACAAAATTAC
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTTACAGAATTAC
78720236 TAAAATACCA
Statistics
Matches: 175, Mismatches: 33, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
53 1 0.01
54 174 0.99
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
Found at i:78720097 original size:81 final size:80
Alignment explanation
Indices: 78719973--78720235 Score: 321
Period size: 81 Copynumber: 3.2 Consensus size: 80
78719963 TACTAAAATG
* * *** *
78719973 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTA-TATTTTACCCTCGATTTA
* *
78720038 TAGAATTACCATTTTA
65 CAGAATTACCGTTTTA
* * *
78720054 CCCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAGAATTATCATTTTATCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTAT-ATTTTACCCTCGATTTA
78720119 CAGAATTACCGTTTTA
65 CAGAATTACCGTTTTA
* * * *
78720135 CCCTCGATTTATAAAATTACCATTTTACCTTTGATTTACAGAAATATTGTTTTACCCTTGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTA-TATTTTACCCTCGATTTA
* *
78720200 CGGAATTATCGTTTTA
65 CAGAATTACCGTTTTA
*
78720216 CCCTC-ATTTTACAAAATTAC
1 CCCTCGA-TTTATAAAATTAC
78720236 TAAAATACCA
Statistics
Matches: 158, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
80 2 0.01
81 155 0.98
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (80 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTATATTTTACCCTCGATTTAC
AGAATTACCGTTTTA
Found at i:78720227 original size:27 final size:27
Alignment explanation
Indices: 78719998--78720224 Score: 267
Period size: 27 Copynumber: 8.4 Consensus size: 27
78719988 ATTACCAAAG
* *
78719998 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
78720025 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
78720052 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
78720079 TACCCTTGATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
78720106 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
78720133 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * * ***
78720160 TACCTTTGATTTACAGAAATATTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* ** * *
78720187 TACCCTTGATTTACGGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
78720214 TACCCTC-ATTT
1 TACCCTCGATTT
78720225 TACAAAATTA
Statistics
Matches: 174, Mismatches: 26, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 4 0.02
27 170 0.98
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:78720272 original size:54 final size:53
Alignment explanation
Indices: 78720214--78720421 Score: 175
Period size: 54 Copynumber: 3.8 Consensus size: 53
78720204 ATTATCGTTT
* * * **
78720214 TACCCTCATTTTACAAAATTACTAAAATACCATTGGTTTAAAAAATTACCAAAA
1 TACCCTCA-TTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * *
78720268 TACCCTCGA-TCAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTC-ATTTA-TAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* ** * *
78720322 TACTCTTGGTTTGTAAAATTACCAAAATACCCTTGGCTTGTAAAATTACCAAAA
1 TAC-CCTCATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * * * * *
78720376 TACCCCTGATTTGTGAAATTATCGAAATACTCTCGATTTGTAAAAT
1 TA-CCCTCATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAAT
78720422 ATCGAAATAC
Statistics
Matches: 124, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
53 2 0.02
54 117 0.94
55 5 0.04
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (53 bp):
TACCCTCATTTATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:78720389 original size:27 final size:27
Alignment explanation
Indices: 78720228--78720405 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
78720218 CTCATTTTAC
* ** **
78720228 AAAATTACTAAAATACCATTGGTTTAA
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
78720255 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
78720282 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
78720309 AAAATTACTAAAATACTCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
78720336 AAAATTACCAAAATACCCTTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
78720363 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
78720390 GAAATTATCGAAATAC
1 AAAATTACCAAAATAC
78720406 TCTCGATTTG
Statistics
Matches: 126, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.02
27 120 0.95
28 4 0.03
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:78720389 original size:81 final size:81
Alignment explanation
Indices: 78720228--78720421 Score: 250
Period size: 81 Copynumber: 2.4 Consensus size: 81
78720218 CTCATTTTAC
**
78720228 AAAATTACTAAAATAC-CATTGGTTTAAAAAATTACCAAAATACCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACTC-TTGGTTTGTAAAATTACCAAAATACCCTCGATCAGTAAAATTACCA
*
78720292 AAATACCCCTGGTTTGT
65 AAATACCCCTGATTTGT
* * *
78720309 AAAATTACTAAAATACTCTTGGTTTGTAAAATTACCAAAATACCCTTG-GCTTGTAAAATTACCA
1 AAAATTACTAAAATACTCTTGGTTTGTAAAATTACCAAAATACCCTCGATC-AGTAAAATTACCA
78720373 AAATACCCCTGATTTGT
65 AAATACCCCTGATTTGT
* * * *
78720390 GAAATTA-TCGAAATACTCTCGATTTGTAAAAT
1 AAAATTACT-AAAATACTCTTGGTTTGTAAAAT
78720422 ATCGAAATAC
Statistics
Matches: 100, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
80 2 0.02
81 97 0.97
82 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (81 bp):
AAAATTACTAAAATACTCTTGGTTTGTAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:78720435 original size:27 final size:26
Alignment explanation
Indices: 78720359--78720436 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
78720349 TACCCTTGGC
* * *
78720359 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAA-TATCGAAATACCTCTGAT
*
78720386 TTGTGAAATTATCGAAATA-CTCTCGAT
1 TTGT-AAAATATCGAAATACCTCT-GAT
78720413 TTGTAAAATATCGAAATACCTCTG
1 TTGTAAAATATCGAAATACCTCTG
78720437 TAGGGTAGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
26 17 0.40
27 23 0.53
28 3 0.07
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (26 bp):
TTGTAAAATATCGAAATACCTCTGAT
Found at i:78720455 original size:27 final size:27
Alignment explanation
Indices: 78720425--78720745 Score: 360
Period size: 27 Copynumber: 12.0 Consensus size: 27
78720415 GTAAAATATC
* *
78720425 GAAATACCTCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACT
*
78720452 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACT
* * *
78720479 GAAATACTCTTGTAAGGTAAAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACT
*
78720506 GAAATACCCCTGTAAGGTAAAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACT
*
78720533 GAAATACCCCTATAAGGTAGAATTA-T
1 GAAATACCCCTGTAAGGTAGAATTACT
* *
78720559 CGAAATACCCTTGTAAGGTAGAATTACC
1 -GAAATACCCCTGTAAGGTAGAATTACT
*
78720587 GAAATACCCCTGTAGGGTAGAATT-CT
1 GAAATACCCCTGTAAGGTAGAATTACT
* ** *
78720613 GAAATACCCTTGTGGGGTAGAATTATT
1 GAAATACCCCTGTAAGGTAGAATTACT
* *
78720640 GAAATACCCCTGTAAGATAGAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACT
** * * *
78720667 GAAATACCTTTATAAGGTAGAAATACC
1 GAAATACCCCTGTAAGGTAGAATTACT
* *
78720694 GAAATA-CCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACT
* * * *
78720720 GAGATACCCTTGTGAGGTAAAATTAC
1 GAAATACCCCTGTAAGGTAGAATTAC
78720746 CATTTTGCCC
Statistics
Matches: 251, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 44 0.18
27 207 0.82
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTGTAAGGTAGAATTACT
Found at i:78720543 original size:81 final size:81
Alignment explanation
Indices: 78720415--78720746 Score: 395
Period size: 80 Copynumber: 4.1 Consensus size: 81
78720405 CTCTCGATTT
* * * *
78720415 GTAAAA-TATCGAAATACCTCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACT
1 GTAAAATTACCGAAATACCCCTGTAAGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACT
*
78720479 GAAATACTCTTGTAAG
66 GAAATACCCTTGTAAG
* * *
78720495 GTAAAATTACTGAAATACCCCTGTAAGGTAAAATTACTGAAATACCCCTATAAGGTAGAATTA-T
1 GTAAAATTACCGAAATACCCCTGTAAGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACT
78720559 CGAAATACCCTTGTAAG
66 -GAAATACCCTTGTAAG
* * * * * *
78720576 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATT-CTGAAATACCCTTGTGGGGTAGAATTATT
1 GTAAAATTACCGAAATACCCCTGTAAGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACT
*
78720640 GAAATACCCCTGTAAG
66 GAAATACCCTTGTAAG
* * ** * *
78720656 ATAGAATTACCGAAATACCTTTATAAGGTAGAAA-TACCGAAATA-CCCTGTAGGGTAGAATTAC
1 GTAAAATTACCGAAATACCCCTGTAAGGTA-AAATTACTGAAATACCCCTGTAGGGTAGAATTAC
* * *
78720719 CGAGATACCCTTGTGAG
65 TGAAATACCCTTGTAAG
78720736 GTAAAATTACC
1 GTAAAATTACC
78720747 ATTTTGCCCC
Statistics
Matches: 214, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
80 109 0.51
81 105 0.49
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCCTGTAAGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACT
GAAATACCCTTGTAAG
Found at i:78720757 original size:107 final size:106
Alignment explanation
Indices: 78720415--78720745 Score: 387
Period size: 107 Copynumber: 3.1 Consensus size: 106
78720405 CTCTCGATTT
* * * * * * * *
78720415 GTAAAA-TATCGAAATACCTCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACT
1 GTAAAATTA-CGAAATACCCCTATAAGATAGAATTACCGAAATACCCTTGTAAGGTAGAATTACC
* * * * *
78720479 GAAATACTCTTGTAAGGTAAAATTACTGAAATACCCCTGTAAG
65 GAAATAC-CCTGTAGGGTAGAATTACTGAAATACCCTTGTGAG
* *
78720522 GTAAAATTACTGAAATACCCCTATAAGGTAGAATTATCGAAATACCCTTGTAAGGTAGAATTACC
1 GTAAAATTAC-GAAATACCCCTATAAGATAGAATTACCGAAATACCCTTGTAAGGTAGAATTACC
*
78720587 GAAATACCCCTGTAGGGTAGAATT-CTGAAATACCCTTGTGGG
65 GAAATA-CCCTGTAGGGTAGAATTACTGAAATACCCTTGTGAG
* * * * * *
78720629 GTAGAATTATTGAAATACCCCTGTAAGATAGAATTACCGAAATACCTTTATAAGGTAGAAATACC
1 GTAAAATTA-CGAAATACCCCTATAAGATAGAATTACCGAAATACCCTTGTAAGGTAGAATTACC
* *
78720694 GAAATACCCTGTAGGGTAGAATTACCGAGATACCCTTGTGAG
65 GAAATACCCTGTAGGGTAGAATTACTGAAATACCCTTGTGAG
78720736 GTAAAATTAC
1 GTAAAATTAC
78720746 CATTTTGCCC
Statistics
Matches: 192, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
106 17 0.09
107 107 0.56
108 67 0.35
109 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (106 bp):
GTAAAATTACGAAATACCCCTATAAGATAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCG
AAATACCCTGTAGGGTAGAATTACTGAAATACCCTTGTGAG
Found at i:78720987 original size:25 final size:25
Alignment explanation
Indices: 78720951--78721020 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
78720941 AGGAAGTGCT
* *
78720951 AAAAGGGATTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
78720976 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
78721001 AAAAGGGCTTTGCCGCAGTT
1 AAAAGGGCTTTGCCCCAGTT
78721021 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:78732137 original size:47 final size:47
Alignment explanation
Indices: 78732074--78732477 Score: 756
Period size: 47 Copynumber: 8.5 Consensus size: 47
78732064 ATGATAGTAT
78732074 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
78732121 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
78732168 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
78732215 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
78732262 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
78732309 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
78732356 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAA
*
78732404 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
78732453 GGCCTAATGGCCGATGTGATGAATG
1 GGCCTAATGGCCGATGTGATGAATG
78732478 CGATAAGTCC
Statistics
Matches: 351, Mismatches: 1, Indels: 8
0.98 0.00 0.02
Matches are distributed among these distances:
46 3 0.01
47 265 0.75
48 43 0.12
49 40 0.11
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:78732659 original size:37 final size:37
Alignment explanation
Indices: 78732603--78732681 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
78732593 CCGAGCTCTA
* * *
78732603 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78732640 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78732677 AAGAC
1 AAGAC
78732682 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78735753 original size:17 final size:19
Alignment explanation
Indices: 78735711--78735754 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
78735701 ACGAAATTTT
*
78735711 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
78735730 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
78735748 AA-TATTA
1 AATTATTA
78735755 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:78735868 original size:15 final size:15
Alignment explanation
Indices: 78735850--78735878 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
78735840 ATATTTATAA
78735850 AATTATTATTATTAT
1 AATTATTATTATTAT
78735865 AATTATTATTATTA
1 AATTATTATTATTA
78735879 GATAGGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:78738183 original size:60 final size:60
Alignment explanation
Indices: 78738106--78738242 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 60
78738096 AACTATGTTA
* * *
78738106 ATATGGCCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTACAGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCTCATAC-TGTAA-AGGGCTACAGCCCAGATTAATACTG
* ** *
78738166 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAAGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTCATACTGTAAAGGGCTACAGCCCAGATTAATACTG
78738226 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
78738243 GTTAACACTA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
60 49 0.73
61 16 0.24
62 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTCATACTGTAAAGGGCTACAGCCCAGATTAATACTG
Found at i:78738938 original size:16 final size:17
Alignment explanation
Indices: 78738906--78738938 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78738896 CATCAAGAAG
78738906 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
78738924 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
78738939 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:78742105 original size:19 final size:19
Alignment explanation
Indices: 78742059--78742106 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
78742049 GTATATATTT
78742059 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
78742077 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
78742096 TAAGTTTTATT
1 TAAATTTTATT
78742107 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:78745582 original size:56 final size:56
Alignment explanation
Indices: 78745347--78745581 Score: 308
Period size: 56 Copynumber: 4.2 Consensus size: 56
78745337 CCATGGCATT
* * * *
78745347 GATATATGTGTGCGAGTAGGACCACGTTTAATACGTTGGCATCGATATGTGATTTT
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
* * * *
78745403 GATATATGTTTGCAAGCAAGACCAAGTTTAATACGTTGGCATCGATATGTGACTTC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
* * * * * *
78745459 GATATATGTGTGCAAGTAAGACCATGTTTAACACATTGGTATCGATATGTGAATCC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
* * *
78745515 GGTATATGTGTACGAGTAAGACCATGTTTAATACTTTGGCATCGATATGTGACTTC
1 GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
*
78745571 AATATATGTGT
1 GATATATGTGT
78745582 ATGAGTAATA
Statistics
Matches: 154, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 154 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
Found at i:78745588 original size:56 final size:56
Alignment explanation
Indices: 78745347--78745619 Score: 298
Period size: 56 Copynumber: 4.9 Consensus size: 56
78745337 CCATGGCATT
* * * * *
78745347 GATATATGTGTGCGAGTAGGACCACGTTTAATACGTTGGCATCGATATGTGATTTT
1 GATATATGTGTACGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
* * * * *
78745403 GATATATGTTTGCAAGCAAGACCAAGTTTAATACGTTGGCATCGATATGTGACTTC
1 GATATATGTGTACGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
* * * * * * *
78745459 GATATATGTGTGCAAGTAAGACCATGTTTAACACATTGGTATCGATATGTGAATCC
1 GATATATGTGTACGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
* *
78745515 GGTATATGTGTACGAGTAAGACCATGTTTAATACTTTGGCATCGATATGTGACTTC
1 GATATATGTGTACGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
* * * * *
78745571 AATATATGTGTATGAGTAATACCCTGTCTAGGATA-G-TGGCATCGATATG
1 GATATATGTGTACGAGTAAGACCATGTTTA--ATACGTTGGCATCGATATG
78745620 GGATTACATG
Statistics
Matches: 185, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
56 182 0.98
58 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
GATATATGTGTACGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTTC
Done.