Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 238 of 332
Found at i:79093763 original size:16 final size:16
Alignment explanation
Indices: 79093742--79093775 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
79093732 GCAAACGTCC
79093742 CTATTTAAGAGTAGAT
1 CTATTTAAGAGTAGAT
*
79093758 CTATTTAAGATTAGAT
1 CTATTTAAGAGTAGAT
79093774 CT
1 CT
79093776 GGCATAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (16 bp):
CTATTTAAGAGTAGAT
Found at i:79096765 original size:40 final size:40
Alignment explanation
Indices: 79096533--79096758 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
79096523 TTGAATGATG
* * * *
79096533 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
79096573 TCCGGACTAAGAT-CCGAAGGCATTTGTATGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79096613 TCCGGACTAAGAT-CGGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79096653 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79096693 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
79096734 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79096759 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.95
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79098252 original size:16 final size:17
Alignment explanation
Indices: 79098234--79098267 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
79098224 AAACAAGGGT
79098234 CACACGCCCGTGTGGTCA
1 CACACGCCCGTGTGGT-A
79098252 CACACGCCCGTGTGGT
1 CACACGCCCGTGTGGT
79098268 TTGGTCCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.15, C:0.38, G:0.29, T:0.18
Consensus pattern (17 bp):
CACACGCCCGTGTGGTA
Found at i:79100101 original size:81 final size:81
Alignment explanation
Indices: 79100011--79100206 Score: 270
Period size: 81 Copynumber: 2.4 Consensus size: 81
79100001 CAATTTACAA
* *
79100011 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATA-CCTCTGTAGGGTAGAATTACTAAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT-TGTAGGGTAGAAATACCAAA
*
79100075 ATACCCCTGTAGGTTAG
65 ATACCCCTGTAGGGTAG
* *
79100092 AATTACTGAAATA-CCTCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAA
1 AATTACTGAAATACCCT-TGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAA
*
79100156 ATATCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * *
79100173 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
79100207 ATTTTGCCCC
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
80 3 0.03
81 92 0.91
82 6 0.06
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (81 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAA
TACCCCTGTAGGGTAG
Found at i:79100206 original size:27 final size:27
Alignment explanation
Indices: 79100011--79100206 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
79100001 CAATTTACAA
*
79100011 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
79100038 AATTACCGAAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
** * *
79100065 AATTACTAAAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
79100092 AATTACTGAAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
*
79100119 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
79100146 AAATACCGAAATATCCC-TGTAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
* * *
79100173 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
79100200 AATTACC
1 AATTACC
79100207 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
26 8 0.05
27 131 0.89
28 8 0.05
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:79100445 original size:25 final size:25
Alignment explanation
Indices: 79100411--79100480 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
79100401 AGGAAGTGCA
*
79100411 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
79100436 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
79100461 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
79100481 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:79100504 original size:50 final size:50
Alignment explanation
Indices: 79100411--79100505 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
79100401 AGGAAGTGCA
**
79100411 AAAAGGGCTTTGCCCCAGTTTATCGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCGAAAAGGGCTAGGCCCCAGTTTACCG
*
79100461 AAAAGGGCTTTGCCCCAG-TTAT-TAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTATCGAAAAG-GGCTAGGCC-CCAGTT
79100506 ATATGATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
48 5 0.12
49 11 0.28
50 24 0.60
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTATCGAAAAGGGCTAGGCCCCAGTTTACCG
Found at i:79109203 original size:27 final size:26
Alignment explanation
Indices: 79109173--79109264 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 26
79109163 ATTACCAAAG
* *
79109173 TACCCTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACA-AATTACCATTT
*
79109200 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTAC-AAATTACCATTT
*
79109227 TACCCTC-AGTTTACCAAATTACCGTTT
1 TACCCTCGA-TTTA-CAAATTACCATTT
79109254 TACCCTCGATT
1 TACCCTCGATT
79109265 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
26 1 0.02
27 53 0.93
28 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.39
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACCATTT
Found at i:79109206 original size:54 final size:53
Alignment explanation
Indices: 79109148--79109284 Score: 118
Period size: 54 Copynumber: 2.5 Consensus size: 53
79109138 TATTGAAATG
* * *
79109148 CCCTCGACTTGTAAAATTACCAAAGTACCCTC-GATTTA-TAGAATTATCATTTTA
1 CCCTCGA-TTGTAAAATTACCAAAATACCCTCAG-TTTACCA-AATTACCATTTTA
* *** *
79109202 CCCTCAATT-TACAAAATTACCATTTTACCCTCAGTTTACCAAATTACCGTTTTA
1 CCCTCGATTGT--AAAATTACCAAAATACCCTCAGTTTACCAAATTACCATTTTA
* *
79109256 CCCTCGATTGTGAAATTACTAAAATACCC
1 CCCTCGATTGTAAAATTACCAAAATACCC
79109285 CTGTAGGATA
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
52 1 0.02
53 15 0.23
54 46 0.71
55 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (53 bp):
CCCTCGATTGTAAAATTACCAAAATACCCTCAGTTTACCAAATTACCATTTTA
Found at i:79109405 original size:27 final size:27
Alignment explanation
Indices: 79109263--79109419 Score: 138
Period size: 27 Copynumber: 5.8 Consensus size: 27
79109253 TTACCCTCGA
* *
79109263 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
79109289 AGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
* * *
79109317 TTGTAAAATTACCAAAATGCCTCTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * * *
79109344 TTGTGAAATTACCGAAATA-TCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
*
79109371 TTGTAAAATTACCAAAATACCCCTATT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
79109398 TTACAAAATTACAAAAATACCC
1 TTGTAAAATTACCAAAATACCC
79109420 TTGACTTTCT
Statistics
Matches: 102, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
26 3 0.03
27 93 0.91
28 6 0.06
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:79109470 original size:27 final size:27
Alignment explanation
Indices: 79109431--79109482 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
79109421 TGACTTTCTA
79109431 AAAATTATAGAAATA-CCATTGGTTTAC
1 AAAATTATAGAAATATCC-TTGGTTTAC
79109458 AAAATTACT-GAAATATCCTTGGTTT
1 AAAATTA-TAGAAATATCCTTGGTTT
79109483 GTGGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATATCCTTGGTTTAC
Found at i:79109600 original size:27 final size:27
Alignment explanation
Indices: 79109536--79109600 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
79109526 ACTCGTAATA
* *
79109536 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTATAG
* *
79109563 GGTAAAGTGACCGTAATA-CCCCTATAT
1 GGTAAAATGACCGTAA-AGCCCCTATAG
79109590 GGTAAAATGAC
1 GGTAAAATGAC
79109601 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTATAG
Found at i:79110469 original size:24 final size:25
Alignment explanation
Indices: 79110394--79110462 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 25
79110384 GGAAGTGCTG
* * *
79110394 AAAGGGCTATGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCCAGTTTATCAA
79110419 AAAGGGCTTTGCCCCAGTTTATCAA
1 AAAGGGCTTTGCCCCAGTTTATCAA
79110444 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
79110463 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATCAA
Found at i:79110475 original size:24 final size:24
Alignment explanation
Indices: 79110394--79110489 Score: 81
Period size: 25 Copynumber: 3.9 Consensus size: 24
79110384 GGAAGTGCTG
* *
79110394 AAAG-GGCTATGCCCCAGTTTACCGA
1 AAAGAGGCTTTGCCCCAG-TTATC-A
79110419 AAAG-GGCTTTGCCCCAGTTTATCA
1 AAAGAGGCTTTGCCCCAG-TTATCA
*
79110443 AAA-AGGGCTTTGCCCCAGTTATTA
1 AAAGA-GGCTTTGCCCCAGTTATCA
**
79110467 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAGAGGCTTTGCC-CCAGTTAT
79110490 ATGATAAAGT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
24 19 0.31
25 43 0.69
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAGAGGCTTTGCCCCAGTTATCA
Found at i:79110731 original size:31 final size:31
Alignment explanation
Indices: 79110682--79110764 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
79110672 CGCTTACAAT
*
79110682 AAAGGCTTTGG-CCAGTGATATGATTTATCA
1 AAAGGCTTCGGCCCAGTGATATGATTTATCA
*
79110712 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATCA
79110743 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
79110765 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 15 0.30
31 35 0.70
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATCA
Found at i:79112743 original size:18 final size:18
Alignment explanation
Indices: 79112720--79112755 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
79112710 TCTCGAAATG
79112720 AACTTACACATATTCTCA
1 AACTTACACATATTCTCA
79112738 AACTTACACATATTCTCA
1 AACTTACACATATTCTCA
79112756 TCTTTGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (18 bp):
AACTTACACATATTCTCA
Found at i:79112938 original size:41 final size:41
Alignment explanation
Indices: 79112893--79112989 Score: 185
Period size: 41 Copynumber: 2.4 Consensus size: 41
79112883 ATAGACGAGC
*
79112893 CTGCTCACACAAGCTGTTGGTCAAGACGTGGCTACACGGTG
1 CTGCTCACACAAGCTGTTGGTCAAGACGTAGCTACACGGTG
79112934 CTGCTCACACAAGCTGTTGGTCAAGACGTAGCTACACGGTG
1 CTGCTCACACAAGCTGTTGGTCAAGACGTAGCTACACGGTG
79112975 CTGCTCACACAAGCT
1 CTGCTCACACAAGCT
79112990 ACCAAGTATC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (41 bp):
CTGCTCACACAAGCTGTTGGTCAAGACGTAGCTACACGGTG
Found at i:79130619 original size:41 final size:40
Alignment explanation
Indices: 79130557--79130646 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 40
79130547 AGAAGAATAT
* **
79130557 CCCTGAATTGCACATACATG-CCACTGTTTGTACTTTGGTA
1 CCCTGAATTGCACATAAATGCCCA-TGTTTGTACTTCAGTA
79130597 CCCCTGAATTGCACATAAATGCCCATGTTTGTACTTCAGTA
1 -CCCTGAATTGCACATAAATGCCCATGTTTGTACTTCAGTA
79130638 CCCTGAATT
1 CCCTGAATT
79130647 CACTTTTGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
40 9 0.20
41 33 0.73
42 3 0.07
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (40 bp):
CCCTGAATTGCACATAAATGCCCATGTTTGTACTTCAGTA
Found at i:79134556 original size:11 final size:11
Alignment explanation
Indices: 79134540--79134568 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
79134530 TCGGGTTATA
79134540 TCTAAGGTGTT
1 TCTAAGGTGTT
79134551 TCTAAGGTGTT
1 TCTAAGGTGTT
79134562 TCTAAGG
1 TCTAAGG
79134569 CCTCGAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.10, G:0.28, T:0.41
Consensus pattern (11 bp):
TCTAAGGTGTT
Found at i:79144040 original size:45 final size:48
Alignment explanation
Indices: 79143882--79144109 Score: 254
Period size: 48 Copynumber: 4.8 Consensus size: 48
79143872 AGGTGTTACA
* * *
79143882 GATCCCATGTAAGACCATGTCTGGGACATTGCTTTGGCATCGTTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTATGT
* * **
79143930 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATAATAA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTATGT
* *
79143978 GA-CATCATGTAAGACCATAG-CTGGG-CTATCGGC-TTTG-AT-A-TATGT
1 GATC-CCATGTAAGACCAT-GTCTGGGAC-AT-GGCATTGGCATCATTATGT
79144023 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTATGT
* ** *
79144071 GGTCCCATGTAAGACCAAATCTGGGATATGGCATTGGCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
79144110 CCCTACCTTG
Statistics
Matches: 150, Mismatches: 19, Indels: 22
0.79 0.10 0.12
Matches are distributed among these distances:
44 4 0.03
45 27 0.18
46 5 0.03
47 5 0.03
48 105 0.70
49 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTATGT
Found at i:79147457 original size:22 final size:22
Alignment explanation
Indices: 79147440--79147482 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
79147430 GAATATATAT
*
79147440 AATCATATACATATATATTCATG
1 AATCAT-TACATAAATATTCATG
79147463 AATCATTACATAAATATTCA
1 AATCATTACATAAATATTCA
79147483 CATTATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (22 bp):
AATCATTACATAAATATTCATG
Found at i:79157889 original size:47 final size:47
Alignment explanation
Indices: 79157835--79158122 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
79157825 TTAGGATTTT
** *
79157835 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
79157882 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
79157929 ATGCGGTGAATATGAACATGCATATATGTGATAAGGTCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
79157976 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
79158023 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * ** *
79158070 ATGTGGTGAATATGAACATGCATATATGTGGTAAAACCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
79158117 ATGTGA
1 ATGTGA
79158123 AATATATATA
Statistics
Matches: 213, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 213 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:79158057 original size:141 final size:141
Alignment explanation
Indices: 79157834--79158099 Score: 496
Period size: 141 Copynumber: 1.9 Consensus size: 141
79157824 TTTAGGATTT
** *
79157834 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
79157899 ATGCATATGTGTGATAAGGCCGAATGGCCAATGCGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGCGGTGAATATGAACATGCATATATGTGATAAG
79157964 GTCGAATGGCC
131 GTCGAATGGCC
79157975 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
79158040 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGCGGTGAATATGAACATGCATATATGTG
79158100 GTAAAACCGA
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 121 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGCGGTGAATATGAACATGCATATATGTGATAAG
GTCGAATGGCC
Found at i:79158078 original size:25 final size:25
Alignment explanation
Indices: 79158003--79158078 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
79157993 ATGCATATAT
79158003 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
79158028 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
79158050 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
79158075 GTGA
1 GTGA
79158079 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:79158173 original size:94 final size:91
Alignment explanation
Indices: 79157857--79158178 Score: 290
Period size: 94 Copynumber: 3.4 Consensus size: 91
79157847 TGAATGTGTA
* * * * * **
79157857 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGA
1 TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAACCGA
* *
79157922 ATGGCCAATGCGGTGAATATGAA-CATG
65 ATGGCCAATGTGATGAATAT-AAGCATG
* * * **
79157949 CATATATGTGATAAGGTCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
1 --TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAACC
* *
79158014 GAATGGCCAATGTGATGAATGTGAGCATG
63 GAATGGCCAATGTGATGAATATAAGCATG
* * *
79158043 CATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAACC
1 TATATGTG-G-TAAGGCCGAATGGCCTATGT-GTGAATATGAACATGCATATATGTGATAAAACC
* * *
79158108 GAATGGTCAATGTGAAATATATATATAAGATATG
63 GAATGGCCAATGTG--AT-GA-ATATAAG-CATG
*
79158142 TATATGTGGTAAAGCCGAATGG-CTA-GTGTGAAGTATG
1 TATATGTGGTAAGGCCGAATGGCCTATGTGTGAA-TATG
79158179 TAGGCGATGT
Statistics
Matches: 194, Mismatches: 24, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
92 7 0.04
93 1 0.01
94 146 0.75
95 7 0.04
96 4 0.02
97 13 0.07
98 6 0.03
99 10 0.05
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.27
Consensus pattern (91 bp):
TATATGTGGTAAGGCCGAATGGCCTATGTGTGAATATGAACATGCATATATGTGATAAAACCGAA
TGGCCAATGTGATGAATATAAGCATG
Found at i:79158546 original size:37 final size:37
Alignment explanation
Indices: 79158327--79158545 Score: 357
Period size: 37 Copynumber: 5.9 Consensus size: 37
79158317 GGAAATATAT
*
79158327 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
79158364 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
79158401 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
79158438 TCCGGGTAAGACCCGATGACTACGCGTGAAGAGTATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
79158475 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
79158512 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
79158546 TCGTCTGAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 170 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:79161171 original size:27 final size:27
Alignment explanation
Indices: 79161141--79161319 Score: 117
Period size: 27 Copynumber: 6.6 Consensus size: 27
79161131 ATATTGAGCC
* * *
79161141 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
79161168 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
79161195 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
79161223 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
79161250 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * *
79161277 CGCACACTTAGTGCAACATAGTCGAAAT
1 CGCACACTTAGTGCTACACAATC-AAAT
79161305 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79161320 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
27 85 0.69
28 39 0.31
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:79161234 original size:55 final size:55
Alignment explanation
Indices: 79161141--79161319 Score: 206
Period size: 55 Copynumber: 3.3 Consensus size: 55
79161131 ATATTGAGCC
* * *
79161141 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
79161195 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** *
79161250 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTC-AAAT
79161305 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79161320 GTACAATTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 40 0.38
55 62 0.59
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:79161280 original size:82 final size:82
Alignment explanation
Indices: 79161162--79161318 Score: 210
Period size: 82 Copynumber: 1.9 Consensus size: 82
79161152 TGCTATACAA
* * *
79161162 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAG-ACTCGC
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAAATCGC
79161226 ACACTTAGTGCCGCATGG
65 ACACTTAGTGCCGCATGG
* * ** *
79161244 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAAATCGC
79161308 ACACTTAGTGC
65 ACACTTAGTGC
79161319 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
81 4 0.06
82 61 0.94
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAAATCGCA
CACTTAGTGCCGCATGG
Found at i:79169248 original size:27 final size:27
Alignment explanation
Indices: 79169218--79169397 Score: 110
Period size: 27 Copynumber: 6.6 Consensus size: 27
79169208 ATATTGAGCC
* * *
79169218 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
79169245 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
79169272 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
79169300 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
79169327 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * *
79169354 CGCACACTTAGTGCAACTAGTAGTCAAAT
1 CGCACACTTAGTGCTAC-A-CAATCAAAT
79169383 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79169398 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
27 80 0.65
28 24 0.19
29 20 0.16
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:79169311 original size:55 final size:55
Alignment explanation
Indices: 79169218--79169397 Score: 199
Period size: 55 Copynumber: 3.3 Consensus size: 55
79169208 ATATTGAGCC
* *
79169218 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACGTAGTCAAAT
* * * *
79169272 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACGTAGTCAAAT
** *
79169327 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACTAGTAGTCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCAC--GTAGTCAAAT
79169383 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
79169398 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 35 0.34
55 45 0.43
56 21 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACGTAGTCAAAT
Found at i:79169357 original size:82 final size:83
Alignment explanation
Indices: 79169239--79169396 Score: 205
Period size: 82 Copynumber: 1.9 Consensus size: 83
79169229 TGCTATACAA
* * * *
79169239 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTAC-A-TAGTTAGACTCG
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACTAGTAGTCA-AATCG
79169302 CACACTTAGTGCCGCATGG
65 CACACTTAGTGCCGCATGG
* * **
79169321 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACTAGTAGTCAAATCG
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACTAGTAGTCAAATCG
79169385 CACACTTAGTGC
65 CACACTTAGTGC
79169397 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
81 2 0.03
82 41 0.63
83 17 0.26
84 5 0.08
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (83 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACTAGTAGTCAAATCGC
ACACTTAGTGCCGCATGG
Found at i:79172513 original size:27 final size:27
Alignment explanation
Indices: 79172476--79172602 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
79172466 TAGTTTATTG
*
79172476 CCACAAAGGCTATTCTTTTAGAGTTTA
1 CCACAAAGGCTATTCTTTCAGAGTTTA
* ** **
79172503 CCACAAAGGCTATTCTTTCATAAATCG
1 CCACAAAGGCTATTCTTTCAGAGTTTA
*
79172530 CTACAAAGGCTATTCTTTCAGAGTTTA
1 CCACAAAGGCTATTCTTTCAGAGTTTA
* * *
79172557 CCATAAAGTCTATTCTTTCAGAGTTTG
1 CCACAAAGGCTATTCTTTCAGAGTTTA
79172584 CCACAAAGGCTATTCTTTC
1 CCACAAAGGCTATTCTTTC
79172603 CTGACGTGTT
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTCAGAGTTTA
Found at i:79172542 original size:54 final size:54
Alignment explanation
Indices: 79172475--79172602 Score: 184
Period size: 54 Copynumber: 2.4 Consensus size: 54
79172465 TTAGTTTATT
* *
79172475 GCCACAAAGGCTATTCTTTTAGAGTTTACCACAAAGGCTATTCTTTCATAAATC
1 GCCACAAAGGCTATTCTTTCAGAGTTTACCACAAAGGCTATTCTTTCAGAAATC
* * * ** *
79172529 GCTACAAAGGCTATTCTTTCAGAGTTTACCATAAAGTCTATTCTTTCAGAGTTT
1 GCCACAAAGGCTATTCTTTCAGAGTTTACCACAAAGGCTATTCTTTCAGAAATC
79172583 GCCACAAAGGCTATTCTTTC
1 GCCACAAAGGCTATTCTTTC
79172603 CTGACGTGTT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (54 bp):
GCCACAAAGGCTATTCTTTCAGAGTTTACCACAAAGGCTATTCTTTCAGAAATC
Found at i:79175650 original size:43 final size:43
Alignment explanation
Indices: 79175602--79175768 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
79175592 ATCGAGATGT
*
79175602 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
* * * * *
79175645 GATTACGTGTAAGACCATTTCTGGGACATTAGCATTGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGA
* * * * * *
79175688 GATTTCGTGTAAGACCGTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGA
* * * *
79175731 GATAACATGTAAGACTATATCTGGGATA-TGGCATTGTA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
79175769 CAAGCTTATG
Statistics
Matches: 98, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 86 0.88
44 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
Found at i:79176476 original size:34 final size:34
Alignment explanation
Indices: 79176410--79176476 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
79176400 TTTGATTTTG
** * *
79176410 AGATGATATTATAATGTGTTATGTGATATGGAAT
1 AGATGATAAGATAATGAGTTATGTAATATGGAAT
79176444 AGATGATAAGATAATGAGTTAATGTAAT-TGGAA
1 AGATGATAAGATAATGAGTT-ATGTAATATGGAA
79176477 CTTATGAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 22 0.79
35 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (34 bp):
AGATGATAAGATAATGAGTTATGTAATATGGAAT
Found at i:79179220 original size:26 final size:26
Alignment explanation
Indices: 79179191--79179258 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
79179181 CCCATTATAT
79179191 GGCTCTTCGTGAGCTT-TTCGATTAAA
1 GGCTCTTCGTGAGCTTCTT-GATTAAA
** * *
79179217 GGCTCTTTATGAGCTTCTTGATTTAT
1 GGCTCTTCGTGAGCTTCTTGATTAAA
*
79179243 GGCTCTCCG-GAGCTTC
1 GGCTCTTCGTGAGCTTC
79179259 CCAATATGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
25 7 0.21
26 25 0.74
27 2 0.06
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.40
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCTTGATTAAA
Found at i:79179269 original size:23 final size:25
Alignment explanation
Indices: 79179240--79179306 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 25
79179230 CTTCTTGATT
79179240 TATGGCTCTCCGGAGCTTCCC-A-A
1 TATGGCTCTCCGGAGCTTCCCGATA
* * *
79179263 TATGGCTCGCCTGAACTTCCCGATA
1 TATGGCTCTCCGGAGCTTCCCGATA
* *
79179288 TATGGCTATCTGGAGCTTC
1 TATGGCTCTCCGGAGCTTC
79179307 TTGATTAACG
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
23 18 0.53
24 1 0.03
25 15 0.44
ACGTcount: A:0.18, C:0.30, G:0.22, T:0.30
Consensus pattern (25 bp):
TATGGCTCTCCGGAGCTTCCCGATA
Found at i:79179309 original size:73 final size:73
Alignment explanation
Indices: 79179227--79179367 Score: 176
Period size: 73 Copynumber: 1.9 Consensus size: 73
79179217 GGCTCTTTAT
* * * * *
79179227 GAGCTTCTTGATTTATGGCTCTCCGGAGCTTCCCAATA-TGGCTCGCCTGAACTTCCCGATATAT
1 GAGCTTCTTGATTAACGGCTCTCCAGAGCTACCCAATATTGGCTCGCATGAACTTCCCGA-ATAT
79179291 GGCTATCTG
65 GGCTATCTG
* * * * *
79179300 GAGCTTCTTGATTAACGGCTTTTCAGAGCTACCCATTATTGGCTCGCATGAGCTTCCTGAATATG
1 GAGCTTCTTGATTAACGGCTCTCCAGAGCTACCCAATATTGGCTCGCATGAACTTCCCGAATATG
79179365 GCT
66 GCT
79179368 CTTATTAGCT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
73 39 0.68
74 18 0.32
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (73 bp):
GAGCTTCTTGATTAACGGCTCTCCAGAGCTACCCAATATTGGCTCGCATGAACTTCCCGAATATG
GCTATCTG
Found at i:79179378 original size:73 final size:73
Alignment explanation
Indices: 79179217--79179379 Score: 168
Period size: 73 Copynumber: 2.2 Consensus size: 73
79179207 TTCGATTAAA
* * * * *
79179217 GGCTCTTTATGAGCTTCTTGATTTATGGCTCTCCGGAGCTTCCCAATATGGCTCGCCTGAACTTC
1 GGCTC-TTATGAGCTTCTTGATTAACGGCTCTCCAGAGCTACCCAATATGGCTCGCATGAACTTC
79179282 CCGATATAT
65 CCGATATAT
* * * * * *
79179291 GGCTATCT-GGAGCTTCTTGATTAACGGCTTTTCAGAGCTACCCATTATTGGCTCGCATGAGCTT
1 GGCTCT-TATGAGCTTCTTGATTAACGGCTCTCCAGAGCTACCCAATA-TGGCTCGCATGAACTT
*
79179355 CCTGA-ATAT
64 CCCGATATAT
*
79179364 GGCTCTTATTAGCTTC
1 GGCTCTTATGAGCTTC
79179380 CCGTTATACA
Statistics
Matches: 71, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
72 1 0.01
73 47 0.66
74 23 0.32
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (73 bp):
GGCTCTTATGAGCTTCTTGATTAACGGCTCTCCAGAGCTACCCAATATGGCTCGCATGAACTTCC
CGATATAT
Found at i:79181740 original size:15 final size:13
Alignment explanation
Indices: 79181709--79181757 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 13
79181699 GGTTTCGTGA
79181709 CCACAC-GGGTGG
1 CCACACAGGGTGG
79181721 CCACACAGGCGTGTG
1 CCACACAGG-GTG-G
79181736 CCACACATGGGTGG
1 CCACACA-GGGTGG
79181750 CTCACACA
1 C-CACACA
79181758 ACCGTGTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.19
13 2 0.06
14 5 0.16
15 17 0.53
16 2 0.06
ACGTcount: A:0.22, C:0.35, G:0.31, T:0.12
Consensus pattern (13 bp):
CCACACAGGGTGG
Found at i:79188298 original size:46 final size:46
Alignment explanation
Indices: 79188245--79188419 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
79188235 TATTTGGGCA
*
79188245 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
79188291 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
79188338 TCCAAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
79188383 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79188420 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 32 0.30
46 34 0.32
47 30 0.28
49 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:79191370 original size:15 final size:15
Alignment explanation
Indices: 79191339--79191414 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
79191329 TCTTGGGTTT
* *
79191339 TTTATCCTGGATCTC
1 TTTATTCTGGATTTC
*
79191354 TTTATTCTAGATTTC
1 TTTATTCTGGATTTC
*
79191369 TTTATTCTGGGTTTC
1 TTTATTCTGGATTTC
*
79191384 TCTA-TCTTGGATTTC
1 TTTATTC-TGGATTTC
*
79191399 TTTATTC-GGTTTTC
1 TTTATTCTGGATTTC
79191413 TT
1 TT
79191415 GTTATCTTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
14 10 0.20
15 38 0.76
16 2 0.04
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTATTCTGGATTTC
Found at i:79193384 original size:46 final size:46
Alignment explanation
Indices: 79193331--79193506 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
79193321 TATTTGGGCA
79193331 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
79193377 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAATAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT--G
* * *
79193422 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
79193470 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79193507 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 8 0.07
45 3 0.03
46 63 0.56
47 29 0.26
48 3 0.03
50 6 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:79193480 original size:93 final size:93
Alignment explanation
Indices: 79193327--79193498 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
79193317 GGGATATTTG
* * *
79193327 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
79193392 TTGAGTCCGAGTTCGTGAGATGTAAATA
66 TTGAGTCCGAGTTCGTGAGATGTAAATA
* *
79193420 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
79193485 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
79193499 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAAATA
Found at i:79199050 original size:550 final size:550
Alignment explanation
Indices: 79198004--79199104 Score: 2166
Period size: 550 Copynumber: 2.0 Consensus size: 550
79197994 CATTTCTCGG
79198004 AGGCTTCCAATTCAAAATAGCAAAAATCTTGCTCAGATCAACTCCTATACCAGATGATGATATAA
1 AGGCTTCCAATTCAAAATAGCAAAAATCTTGCTCAGATCAACTCCTATACCAGATGATGATATAA
79198069 TATGGCCCAGAAAACCAGCTTCGCATAACCAGAACTCACATTTACTGAACTTCGCAAATAATTGT
66 TATGGCCCAGAAAACCAGCTTCGCATAACCAGAACTCACATTTACTGAACTTCGCAAATAATTGT
*
79198134 TTATCACGCAAAATCTGTAGCACTATTCTCAAATGTTCGGCTTGTTTGGTTTCATCATGTGAATA
131 TTATCACGCAAAATCTGTAGCACTATTCTCAAATGTTCGGCTTGTTTAGTTTCATCATGTGAATA
79198199 TATCAAAATGTCATCAATGAATACAATGAAAAATCAATCTAAATATGGTCTAAAAATTCTATTCA
196 TATCAAAATGTCATCAATGAATACAATGAAAAATCAATCTAAATATGGTCTAAAAATTCTATTCA
79198264 TCAAATCCATAAAAACACCAGGTGCATTTGTTAATCCGAAAGGCATAACCAAAAACACATAATGT
261 TCAAATCCATAAAAACACCAGGTGCATTTGTTAATCCGAAAGGCATAACCAAAAACACATAATGT
*
79198329 CTGTACCTCGTTCGGAAAGCAGTTTTTGAAACGTCTGAGTATTTTACTCGCAACTGATAATAACC
326 CTGTACCTCGTTCGGAAAGCAGTTTTCGAAACGTCTGAGTATTTTACTCGCAACTGATAATAACC
79198394 CGACCTCATATCTATCTTTGAAAACACAGTAGCTCCTTTTAACTAATCAAACAAATCATTAATTC
391 CGACCTCATATCTATCTTTGAAAACACAGTAGCTCCTTTTAACTAATCAAACAAATCATTAATTC
79198459 AGGGCAGAGGATATTTGTTCTTGATAGTCACTTTGTTCAATTGACGATAATCAATGCACATTCTC
456 AGGGCAGAGGATATTTGTTCTTGATAGTCACTTTGTTCAATTGACGATAATCAATGCACATTCTC
79198524 ATCATGCCTCCTTTCTTTTTCGCAAACAGA
521 ATCATGCCTCCTTTCTTTTTCGCAAACAGA
*
79198554 AGGCTTCCAATTCAAAATAGCGAAAATCTTGCTCAGATCAACTCCTATACCAGATGATGATATAA
1 AGGCTTCCAATTCAAAATAGCAAAAATCTTGCTCAGATCAACTCCTATACCAGATGATGATATAA
79198619 TATGGCCCAGAAAACCAGCTTCGCATAACCAGAACTCACATTTACTGAACTTCGCAAATAATTGT
66 TATGGCCCAGAAAACCAGCTTCGCATAACCAGAACTCACATTTACTGAACTTCGCAAATAATTGT
79198684 TTATCACGCAAAATCTGTAGCACTATTCTCAAATGTTCGGCTTGTTTAGTTTCATCATGTGAATA
131 TTATCACGCAAAATCTGTAGCACTATTCTCAAATGTTCGGCTTGTTTAGTTTCATCATGTGAATA
79198749 TATCAAAATGTCATCAATGAATACAATGAAAAATCAATCTAAATATGGTCTAAAAATTCTATTCA
196 TATCAAAATGTCATCAATGAATACAATGAAAAATCAATCTAAATATGGTCTAAAAATTCTATTCA
79198814 TCAAATCCATAAAAACACCAGGTGCATTTGTTAATCCGAAAGGCATAACCAAAAACACATAATGT
261 TCAAATCCATAAAAACACCAGGTGCATTTGTTAATCCGAAAGGCATAACCAAAAACACATAATGT
79198879 CTGTACCTCGTTCGGAAAGCAGTTTTCGAAACGTCTGAGTATTTTACTCGCAACTGATAATAACC
326 CTGTACCTCGTTCGGAAAGCAGTTTTCGAAACGTCTGAGTATTTTACTCGCAACTGATAATAACC
79198944 CGACCTCATATCTATCTTTGAAAACACAGTAGCTCCTTTTAACTAATCAAACAAATCATTAATTC
391 CGACCTCATATCTATCTTTGAAAACACAGTAGCTCCTTTTAACTAATCAAACAAATCATTAATTC
*
79199009 AGGGCAGAGGATATTTGTTCTTGATAGTCACTTTTTTCAATTGACGATAATCAATGCACATTCTC
456 AGGGCAGAGGATATTTGTTCTTGATAGTCACTTTGTTCAATTGACGATAATCAATGCACATTCTC
79199074 ATCATGCCTCCTTTCTTTTTCGCAAACAGA
521 ATCATGCCTCCTTTCTTTTTCGCAAACAGA
79199104 A
1 A
79199105 CAGGTGCACC
Statistics
Matches: 547, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
550 547 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (550 bp):
AGGCTTCCAATTCAAAATAGCAAAAATCTTGCTCAGATCAACTCCTATACCAGATGATGATATAA
TATGGCCCAGAAAACCAGCTTCGCATAACCAGAACTCACATTTACTGAACTTCGCAAATAATTGT
TTATCACGCAAAATCTGTAGCACTATTCTCAAATGTTCGGCTTGTTTAGTTTCATCATGTGAATA
TATCAAAATGTCATCAATGAATACAATGAAAAATCAATCTAAATATGGTCTAAAAATTCTATTCA
TCAAATCCATAAAAACACCAGGTGCATTTGTTAATCCGAAAGGCATAACCAAAAACACATAATGT
CTGTACCTCGTTCGGAAAGCAGTTTTCGAAACGTCTGAGTATTTTACTCGCAACTGATAATAACC
CGACCTCATATCTATCTTTGAAAACACAGTAGCTCCTTTTAACTAATCAAACAAATCATTAATTC
AGGGCAGAGGATATTTGTTCTTGATAGTCACTTTGTTCAATTGACGATAATCAATGCACATTCTC
ATCATGCCTCCTTTCTTTTTCGCAAACAGA
Found at i:79209237 original size:21 final size:21
Alignment explanation
Indices: 79209188--79209235 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
79209178 TCGCTACTTT
79209188 TAAAAAATATTTATATATGTA
1 TAAAAAATATTTATATATGTA
*
79209209 TATAAAATATTTATA-AT-TA
1 TAAAAAATATTTATATATGTA
79209228 TCAAAAAA
1 T-AAAAAA
79209236 ATTAAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 7 0.29
21 14 0.58
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAAAAAATATTTATATATGTA
Found at i:79214590 original size:32 final size:32
Alignment explanation
Indices: 79214550--79214614 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
79214540 GGGTACATAA
79214550 AATAATTTCTCCCCAAATCACCCACACTTGTT
1 AATAATTTCTCCCCAAATCACCCACACTTGTT
79214582 AATAATTTCTCCCCAAATCACCCACACTTGTT
1 AATAATTTCTCCCCAAATCACCCACACTTGTT
79214614 A
1 A
79214615 TTATATGGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.34, G:0.03, T:0.31
Consensus pattern (32 bp):
AATAATTTCTCCCCAAATCACCCACACTTGTT
Found at i:79236241 original size:34 final size:34
Alignment explanation
Indices: 79236198--79236272 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
79236188 AAGACGCTGC
79236198 TTCATATGCAACTTGCTTGTTAGAGTTTTCGACA
1 TTCATATGCAACTTGCTTGTTAGAGTTTTCGACA
79236232 TTCATATGCAACTTGCTTGTTAGAGTTTTCGACA
1 TTCATATGCAACTTGCTTGTTAGAGTTTTCGACA
*
79236266 TACATAT
1 TTCATAT
79236273 TTGTTCTAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.41
Consensus pattern (34 bp):
TTCATATGCAACTTGCTTGTTAGAGTTTTCGACA
Found at i:79236606 original size:11 final size:11
Alignment explanation
Indices: 79236590--79236619 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
79236580 CCCATTTGTG
79236590 AAAAATAAAAT
1 AAAAATAAAAT
79236601 AAAAATAAAAT
1 AAAAATAAAAT
79236612 -AAAATAAA
1 AAAAATAAA
79236620 GAACACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:79237555 original size:14 final size:15
Alignment explanation
Indices: 79237530--79237559 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
79237520 TGACTCGCCC
79237530 TTATTAATTTTTATA
1 TTATTAATTTTTATA
79237545 TTATT-ATTTTTATA
1 TTATTAATTTTTATA
79237559 T
1 T
79237560 AAAAACAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTATTAATTTTTATA
Found at i:79245236 original size:25 final size:23
Alignment explanation
Indices: 79245208--79245267 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 23
79245198 TAACAAATAT
79245208 ATAATTATTAAATATTTAATT-AAAA
1 ATAATTA-TAAATATTT--TTCAAAA
79245233 ATAA-TATAAATATTTTTCAAAA
1 ATAATTATAAATATTTTTCAAAA
*
79245255 ATAA-TAAAAATAT
1 ATAATTATAAATAT
79245268 AAACAAACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 2 0.06
22 16 0.48
23 9 0.27
24 2 0.06
25 4 0.12
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
ATAATTATAAATATTTTTCAAAA
Found at i:79245257 original size:22 final size:22
Alignment explanation
Indices: 79245216--79245267 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
79245206 ATATAATTAT
79245216 TAAATATTTAATTAAAAATAATA
1 TAAATATTT-ATTAAAAATAATA
79245239 TAAATATTT-TTCAAAAATAATA
1 TAAATATTTATT-AAAAATAATA
*
79245261 AAAATAT
1 TAAATAT
79245268 AAACAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 2 0.07
22 16 0.59
23 9 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATATTTATTAAAAATAATA
Found at i:79247203 original size:143 final size:145
Alignment explanation
Indices: 79247027--79247297 Score: 340
Period size: 145 Copynumber: 1.9 Consensus size: 145
79247017 CGGCGCTTTA
*
79247027 AAAAAACGCCACAAAAAATTAGCGTTTTATATTGAGCTTC-AGCAGCGTTAGCGGCG-TCTTTTG
1 AAAAAACGCCACAAAAAATTAGCGTTTTATATTGAGCTTCTAGCAGCGTTAGCAGCGCTCTTTTG
* *
79247090 AAAAAACGCCGCTATA-G-ATCGA-GTATTAGTG-GCGCTTTTTAAAAAACGCCGCTAATGTTCT
66 AAAAAACGCCGCTATATGTA-C-ACCT-TTAG-GAGCGCTTTTTAAAAAACGCCGCTAATGCTCT
79247151 ATCTTTAGTGGCACTTTTC
127 ATCTTTAGTGGCACTTTTC
* * ** * *
79247170 AAAAAACGCCACAAAAAATTTTGC-TTTTGTATTGAGCTTCTAGTGGCTTTAGCAGCGCTTTTTT
1 AAAAAACGCCACAAAAAA-TTAGCGTTTTATATTGAGCTTCTAGCAGCGTTAGCAGCGCTCTTTT
* * *
79247234 TATAAAATGCCGCTATATGTACACCTTTAGGAGCGCTTTTTAAAAAACGCCGCTAATGCTCTAT
65 GAAAAAACGCCGCTATATGTACACCTTTAGGAGCGCTTTTTAAAAAACGCCGCTAATGCTCTAT
79247298 TGCTTTTAGT
Statistics
Matches: 109, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
143 33 0.30
144 17 0.16
145 55 0.50
146 3 0.03
147 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (145 bp):
AAAAAACGCCACAAAAAATTAGCGTTTTATATTGAGCTTCTAGCAGCGTTAGCAGCGCTCTTTTG
AAAAAACGCCGCTATATGTACACCTTTAGGAGCGCTTTTTAAAAAACGCCGCTAATGCTCTATCT
TTAGTGGCACTTTTC
Found at i:79247671 original size:14 final size:14
Alignment explanation
Indices: 79247652--79247679 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79247642 TTAATTATCA
79247652 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
79247666 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
79247680 ATATGTGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:79249367 original size:39 final size:40
Alignment explanation
Indices: 79249231--79249455 Score: 235
Period size: 39 Copynumber: 5.7 Consensus size: 40
79249221 TTGAATGCTG
* * * * *
79249231 TCCGGGCTAAGTCCCGAAGCGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAG-GCATTTGTGC-GAGTTACTAAA
** *
79249272 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79249311 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79249351 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79249391 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79249430 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
79249456 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 67 0.43
40 66 0.42
41 23 0.15
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79249380 original size:79 final size:79
Alignment explanation
Indices: 79249285--79249453 Score: 225
Period size: 79 Copynumber: 2.1 Consensus size: 79
79249275 GGACTAAGAT
* *
79249285 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACT
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGTTACT
* *
79249348 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * *
79249364 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGTTACTAA
*
79249429 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
79249443 CCGAAGGCATT
1 CCGAAGGCATT
79249454 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 9 0.11
79 67 0.85
80 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGTTACTAA
AACCGGGCTAAGTC
Found at i:79249473 original size:79 final size:79
Alignment explanation
Indices: 79249312--79249488 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
79249302 AGATACAAAT
* * * *
79249312 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
79249377 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * *
79249391 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
79249455 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
79249470 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
79249489 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 25 0.30
79 58 0.70
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:79257305 original size:39 final size:40
Alignment explanation
Indices: 79257170--79257393 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
79257160 TTGAATGCTG
* * * * *
79257170 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
79257210 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79257249 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79257289 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79257329 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79257368 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
79257394 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
39 67 0.43
40 82 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79257310 original size:79 final size:78
Alignment explanation
Indices: 79257170--79257393 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 78
79257160 TTGAATGCTG
* * * * *
79257170 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
79257234 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * *
79257249 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
79257314 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * * *
79257329 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
79257394 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 10 0.08
79 81 0.66
80 24 0.20
81 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:79257411 original size:79 final size:79
Alignment explanation
Indices: 79257250--79257426 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
79257240 AGATACAAAT
* * * *
79257250 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
79257315 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * *
79257329 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
79257393 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
79257408 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
79257427 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 25 0.30
79 58 0.70
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:79258855 original size:7 final size:7
Alignment explanation
Indices: 79258812--79258882 Score: 61
Period size: 7 Copynumber: 10.0 Consensus size: 7
79258802 GAGTTCCTAT
*
79258812 TTTAAGG
1 TTTATGG
79258819 TTTATGG
1 TTTATGG
*
79258826 ATTATGAG
1 TTTATG-G
*
79258834 TTTATGA
1 TTTATGG
*
79258841 ATTATGG
1 TTTATGG
79258848 TTTATGG
1 TTTATGG
*
79258855 TTTAGGG
1 TTTATGG
* **
79258862 GTTGGGG
1 TTTATGG
79258869 TTTATGG
1 TTTATGG
79258876 TTTATGG
1 TTTATGG
79258883 GTTAAGGGTT
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 44 0.88
8 6 0.12
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (7 bp):
TTTATGG
Found at i:79258870 original size:21 final size:21
Alignment explanation
Indices: 79258846--79258885 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
79258836 TATGAATTAT
79258846 GGTTTATGGTTTAGGGGTTGG
1 GGTTTATGGTTTAGGGGTTGG
*
79258867 GGTTTATGGTTTATGGGTT
1 GGTTTATGGTTTAGGGGTT
79258886 AAGGGTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.00, G:0.42, T:0.47
Consensus pattern (21 bp):
GGTTTATGGTTTAGGGGTTGG
Found at i:79258878 original size:28 final size:29
Alignment explanation
Indices: 79258842--79258899 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
79258832 AGTTTATGAA
* *
79258842 TTATGGTTTATGGTTTAGGGGTT-GGGGT
1 TTATGGTTTATGGGTTAAGGGTTAGGGGT
79258870 TTATGGTTTATGGGTTAAGGGTTAGGGGT
1 TTATGGTTTATGGGTTAAGGGTTAGGGGT
79258899 T
1 T
79258900 CAAGGTTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 21 0.78
29 6 0.22
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (29 bp):
TTATGGTTTATGGGTTAAGGGTTAGGGGT
Found at i:79259064 original size:51 final size:51
Alignment explanation
Indices: 79258988--79259090 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
79258978 TGTAAAAGAG
*
79258988 ATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAGTTTAGGGTTT
1 ATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAATTTAGGGTTT
79259039 ATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAATTTAGGGTTT
1 ATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAATTTAGGGTTT
79259090 A
1 A
79259091 CGATTTAGGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.49
Consensus pattern (51 bp):
ATAGTATTAATTTTAAAATATTGAATTAATTATCATTATAATTTAGGGTTT
Found at i:79259161 original size:14 final size:14
Alignment explanation
Indices: 79259080--79259169 Score: 56
Period size: 14 Copynumber: 6.4 Consensus size: 14
79259070 ATCATTATAA
*
79259080 TTTAGGGTTTACGA
1 TTTAGGGTTTACGG
* *
79259094 TTTAGGGTATATGG
1 TTTAGGGTTTACGG
* *
79259108 TTAAGGGTTTAAGG
1 TTTAGGGTTTACGG
* *
79259122 TTTATGAG-TTACGAT
1 TTTA-GGGTTTACG-G
* * *
79259137 TTTAAGATTTATGG
1 TTTAGGGTTTACGG
*
79259151 TTTAGGGTTTAGGG
1 TTTAGGGTTTACGG
79259165 TTTAG
1 TTTAG
79259170 TGTGCAATTG
Statistics
Matches: 55, Mismatches: 18, Indels: 6
0.70 0.23 0.08
Matches are distributed among these distances:
14 45 0.82
15 10 0.18
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.44
Consensus pattern (14 bp):
TTTAGGGTTTACGG
Found at i:79259475 original size:20 final size:22
Alignment explanation
Indices: 79259452--79259503 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 22
79259442 AATATATATA
79259452 TTTAGAGTTTAGAG-TGTAA-G
1 TTTAGAGTTTAGAGATGTAAGG
* *
79259472 TTTATAGTTT-GAGATTTAAGG
1 TTTAGAGTTTAGAGATGTAAGG
*
79259493 TTTAGGGTTTA
1 TTTAGAGTTTA
79259504 CTGTTGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 3 0.12
20 13 0.52
21 9 0.36
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (22 bp):
TTTAGAGTTTAGAGATGTAAGG
Found at i:79259706 original size:17 final size:18
Alignment explanation
Indices: 79259684--79259720 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
79259674 AATATTTCTT
79259684 TTAATATA-TTAAAATTA
1 TTAATATAGTTAAAATTA
*
79259701 TTAATATAGTTTAAATTA
1 TTAATATAGTTAAAATTA
79259719 TT
1 TT
79259721 TAAGAGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTAATATAGTTAAAATTA
Found at i:79259723 original size:19 final size:18
Alignment explanation
Indices: 79259683--79259723 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
79259673 TAATATTTCT
79259683 TTTAATATATTAAAATTA
1 TTTAATATATTAAAATTA
*
79259701 -TTAATATAGTTTAAATTA
1 TTTAATATA-TTAAAATTA
79259719 TTTAA
1 TTTAA
79259724 GAGATAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTAATATATTAAAATTA
Found at i:79268268 original size:26 final size:26
Alignment explanation
Indices: 79268239--79268372 Score: 205
Period size: 26 Copynumber: 5.2 Consensus size: 26
79268229 TGGTACAAAT
79268239 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
79268265 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79268291 TGATAATGTGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
79268317 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
79268343 TGATAATGGTTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
79268369 TGAT
1 TGAT
79268373 GGGCATTTCA
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 98 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:79273076 original size:43 final size:43
Alignment explanation
Indices: 79273009--79273095 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
79272999 TTTAAATTTT
* * * * *
79273009 ATGACCTTTAGCGGCGTTTTTGGGAGAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGAGGCGTTTGTGGGAAAAACGCCGCTAAAAGTC
* *
79273052 ATGACTTTTAGAGGTGTTTGTGGGAAAAACGCCGCTAAAAGTC
1 ATGACCTTTAGAGGCGTTTGTGGGAAAAACGCCGCTAAAAGTC
79273095 A
1 A
79273096 ATTTTGCTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (43 bp):
ATGACCTTTAGAGGCGTTTGTGGGAAAAACGCCGCTAAAAGTC
Found at i:79274724 original size:29 final size:29
Alignment explanation
Indices: 79274691--79274747 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
79274681 CACAGTAAGG
79274691 TGCTATTGATAAATTTGTTTTTAAAAAAA
1 TGCTATTGATAAATTTGTTTTTAAAAAAA
*
79274720 TGCTATTGATAAATTTGTTTTTCAAAAA
1 TGCTATTGATAAATTTGTTTTTAAAAAA
79274748 GTAGTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.46
Consensus pattern (29 bp):
TGCTATTGATAAATTTGTTTTTAAAAAAA
Found at i:79280031 original size:14 final size:14
Alignment explanation
Indices: 79280012--79280039 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79280002 CACATGTGTG
79280012 TTTGATTTCTACTA
1 TTTGATTTCTACTA
79280026 TTTGATTTCTACTA
1 TTTGATTTCTACTA
79280040 GTCTTTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (14 bp):
TTTGATTTCTACTA
Found at i:79285215 original size:23 final size:22
Alignment explanation
Indices: 79285185--79285247 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 22
79285175 AAATTAAATC
*
79285185 TCTAAGATTTCAAAATCATATCT
1 TCTAAGATTGC-AAATCATATCT
*
79285208 TCTAAGATTGCATATCATA---
1 TCTAAGATTGCAAATCATATCT
79285227 TCTAAGATTGC-AATCATATCT
1 TCTAAGATTGCAAATCATATCT
79285248 AAGATTGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
18 6 0.18
19 11 0.32
22 7 0.21
23 10 0.29
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (22 bp):
TCTAAGATTGCAAATCATATCT
Found at i:79285264 original size:35 final size:36
Alignment explanation
Indices: 79285208--79285333 Score: 193
Period size: 35 Copynumber: 3.5 Consensus size: 36
79285198 AATCATATCT
*
79285208 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCTATCATA
79285245 TCTAAGATTG-TATCATATCTAAGATTGCGTATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGC-TATCATA
*
79285281 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCTATCATA
79285316 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
79285334 TGAAGATTAT
Statistics
Matches: 83, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
35 36 0.43
36 21 0.25
37 26 0.31
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCTATCATA
Found at i:79285278 original size:54 final size:54
Alignment explanation
Indices: 79285208--79285333 Score: 243
Period size: 54 Copynumber: 2.3 Consensus size: 54
79285198 AATCATATCT
79285208 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
79285262 TCTAAGATTGCGTATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
79285316 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
79285334 TGAAGATTAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:79285331 original size:14 final size:15
Alignment explanation
Indices: 79285222--79285331 Score: 87
Period size: 17 Copynumber: 6.5 Consensus size: 15
79285212 AGATTGCATA
79285222 TCATATCTAAGATTG
1 TCATATCTAAGATTG
79285237 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
79285255 TATCATATCTAAGATTGCG
1 --TCATATCTAAGATT--G
79285274 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
79285291 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
79285309 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
79285326 -CATATC
1 TCATATC
79285332 ATTGAAGATT
Statistics
Matches: 86, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
14 6 0.07
17 32 0.37
18 31 0.36
19 17 0.20
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:79285341 original size:17 final size:19
Alignment explanation
Indices: 79285208--79285333 Score: 201
Period size: 19 Copynumber: 6.9 Consensus size: 19
79285198 AATCATATCT
79285208 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
79285227 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
79285245 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
79285262 TCTAAGATTGCGTATCATA
1 TCTAAGATTGCATATCATA
79285281 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
79285299 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
79285316 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
79285334 TGAAGATTAT
Statistics
Matches: 100, Mismatches: 1, Indels: 12
0.88 0.01 0.11
Matches are distributed among these distances:
17 32 0.32
18 32 0.32
19 36 0.36
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:79285866 original size:87 final size:85
Alignment explanation
Indices: 79285727--79285889 Score: 202
Period size: 87 Copynumber: 1.9 Consensus size: 85
79285717 CAATTCAGTT
* * * *
79285727 ATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACATGTGAAAGCCAAATCTGCTGTGTCTTTGA
1 ATGCCAAATCATCTTAGATCTACTTCA-CGTAAACATCTGAAAGCCAAATCTGCTAT-TCTTTAA
79285792 TTTGCTCCTTGTGAACACAAGG
64 TTTGCTCCTTGTGAACACAAGG
* * * *
79285814 ATGCCAAATCATCTTGGATCTACTTCA-GTAAAATCATCTGAAGGTCAGATCTGCTATTCTTTAA
1 ATGCCAAATCATCTTAGATCTACTTCACGT-AAA-CATCTGAAAGCCAAATCTGCTATTCTTTAA
*
79285878 TTTGCTTCTTGT
64 TTTGCTCCTTGT
79285890 AAACTTATGA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
85 2 0.03
86 20 0.31
87 43 0.66
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (85 bp):
ATGCCAAATCATCTTAGATCTACTTCACGTAAACATCTGAAAGCCAAATCTGCTATTCTTTAATT
TGCTCCTTGTGAACACAAGG
Found at i:79285993 original size:43 final size:44
Alignment explanation
Indices: 79285914--79285996 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
79285904 CCTGTTGATA
**
79285914 TCTTCGATCTGCTCTCTGCCAAGTACAGAGACGCCAAATCTGTT
1 TCTTCGATCTGCTCTCTAACAAGTACAGAGACGCCAAATCTGTT
* * *
79285958 TCTTCGATTTGTTCTCTAACAA-TACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCTAACAAGTACAGAGACGCCAAATC
79285997 ATCTTAGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 16 0.47
44 18 0.53
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTAACAAGTACAGAGACGCCAAATCTGTT
Found at i:79286102 original size:260 final size:255
Alignment explanation
Indices: 79285638--79286125 Score: 701
Period size: 260 Copynumber: 1.9 Consensus size: 255
79285628 GCAAACTCAA
*
79285638 GACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCGAACACAGAGACGCCAAATCTGCTTCTTC
1 GACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCCAACACAGAGACGCCAAATCTGCTTCTTC
* * ** * *
79285703 GATTTGTTTTCTAACAATTCAGTTATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACATGTGA
66 GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
* * * * *
79285768 AAGCCAAATCTGCTGTGTCTTTGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGAT
131 AAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGAT
79285833 CTACTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATTCTTTAATTTGCTTCTTGTAAACTTAT
196 CTACTTCAG-----TCATCTGAAGGTCAGATCTGCTATTCTTTAATTTGCTTCTTGTAAACTTAT
* * * *
79285898 GACTGTCCTGTTGATATCTTCGATCTGCTCTCTG-CCAAGTACAGAGACGCCAAATCTGTTTCTT
1 GACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCCAA-CACAGAGACGCCAAATCTGCTTCTT
* * *
79285962 CGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCTTAAGCACGCG
65 CGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCG
*
79286027 AAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGT-AAGCACAAGGATGCCAAACCATCTTGG
130 AAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTGAA-CACAAGGATGCCAAACCATCTTGG
* *
79286091 ATCTGCTTCAGTCATCTGAAGGTTAGATCTGCTAT
194 ATCTACTTCAGTCATCTGAAGGTCAGATCTGCTAT
79286126 GTATCTGCTC
Statistics
Matches: 204, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
255 23 0.11
259 5 0.02
260 176 0.86
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (255 bp):
GACTGTCATGTTGATATCTTCGATCTGCTCTCCGTCCAACACAGAGACGCCAAATCTGCTTCTTC
GATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGCGA
AAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAACCATCTTGGAT
CTACTTCAGTCATCTGAAGGTCAGATCTGCTATTCTTTAATTTGCTTCTTGTAAACTTAT
Found at i:79286413 original size:205 final size:205
Alignment explanation
Indices: 79285959--79286662 Score: 1211
Period size: 205 Copynumber: 3.5 Consensus size: 205
79285949 AAATCTGTTT
* * *
79285959 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCTTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* *
79286024 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
79286089 GGATCTGCTTCAG--T---CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
79286149 AGATGCCAGA
196 AGATGCCAGA
* *
79286159 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* *
79286224 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
79286289 GGATCTGCTTCAGTATAAACATCTGTAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
79286354 AGATGCCAGA
196 AGATGCCAGA
79286364 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
*
79286429 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
79286494 GGATCTGCTTCAGTACAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATCGAAATAG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
*
79286559 AGATGCCAAA
196 AGATGCCAGA
* * *
79286569 CTTCAATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
79286634 GTGAAAGCCAAATCAGCTATGTCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
79286663 CTGCTCTCCG
Statistics
Matches: 477, Mismatches: 22, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
200 136 0.29
202 1 0.00
205 340 0.71
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:79286706 original size:44 final size:44
Alignment explanation
Indices: 79286640--79286747 Score: 153
Period size: 44 Copynumber: 2.4 Consensus size: 44
79286630 ACACGTGAAA
* *
79286640 GCCAAATCAGCTATGTCTTCGATCTGCTCTCCGCCAATACAGAGAT
1 GCCAAATCTGCTA--TCTTCGATCTGCTCTCCGACAATACAGAGAT
* * *
79286686 GCCAAATCTGGTATCTTCGATCTGCTCTCTGACAATACGGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGAT
79286730 GCCAAATCTGCTATCTTC
1 GCCAAATCTGCTATCTTC
79286748 AACTTGTTCC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 45 0.80
46 11 0.20
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGAT
Found at i:79286775 original size:44 final size:44
Alignment explanation
Indices: 79286727--79287001 Score: 163
Period size: 44 Copynumber: 6.3 Consensus size: 44
79286717 ACAATACGGA
79286727 GATGCCAAATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAAG
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAAG
** * * ** * *
79286771 GATGCC--ATGCTGAAATCCTCGATCTGCTTCGTTGTAAGCAC-AG
1 GATGCCAAAT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAAG
* * * * *
79286814 GAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACAGG
1 GA-TGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAAG
*
79286859 GATGCCAAATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGG
1 GATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAACACAAG
*** * ** * * *
79286903 GATGCC--ATGCTAAAATATTTGATCTGCTTCGCTGTAAGCAC-AG
1 GATGCCAAAT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAAG
* * * *
79286946 GAATGTC-AATATGCTATCTTCGATCTGTTCCCTATAAACACAGG
1 G-ATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAAG
*
79286990 GATGTCAAATCT
1 GATGCCAAATCT
79287002 TGTTTCTTTG
Statistics
Matches: 173, Mismatches: 43, Indels: 30
0.70 0.17 0.12
Matches are distributed among these distances:
42 4 0.02
43 43 0.25
44 105 0.61
45 19 0.11
46 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
GATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAACACAAG
Found at i:79286863 original size:132 final size:131
Alignment explanation
Indices: 79286727--79287001 Score: 451
Period size: 132 Copynumber: 2.1 Consensus size: 131
79286717 ACAATACGGA
* *
79286727 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTGAAATCCTCG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTAAAATACTCG
* * * *
79286792 ATCTGCTTCGTTGTAAGCACAGGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAACACA
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCA-ATATGCTATCTTCGATCTGTTCCCTATAAACACA
79286857 GG
130 GG
* * *
79286859 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATATTTG
1 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTAAAATACTCG
79286924 ATCTGCTTCGCTGTAAGCACAGGAATGTCAATATGCTATCTTCGATCTGTTCCCTATAAACACAG
66 ATCTGCTTCGCTGTAAGCACAGGAATGTCAATATGCTATCTTCGATCTGTTCCCTATAAACACAG
79286989 G
131 G
*
79286990 GATGTCAAATCT
1 GATGCCAAATCT
79287002 TGTTTCTTTG
Statistics
Matches: 133, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
131 45 0.34
132 88 0.66
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (131 bp):
GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCCATGCTAAAATACTCG
ATCTGCTTCGCTGTAAGCACAGGAATGTCAATATGCTATCTTCGATCTGTTCCCTATAAACACAG
G
Found at i:79287903 original size:1 final size:1
Alignment explanation
Indices: 79287893--79287984 Score: 58
Period size: 1 Copynumber: 92.0 Consensus size: 1
79287883 GGCCTCTCCA
* * * * * * * * * *
79287893 TTTTTCTTTTTTCTTTTTTTCTTTTTTTTATTTTTTTCTCTTTTTTCTTTTTATTTTTTTTCTCT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * **
79287958 TTTTCTTTTCTTTTTTCCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
79287985 GAAATAGAAG
Statistics
Matches: 65, Mismatches: 26, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (1 bp):
T
Found at i:79287905 original size:7 final size:7
Alignment explanation
Indices: 79287893--79287981 Score: 87
Period size: 7 Copynumber: 12.7 Consensus size: 7
79287883 GGCCTCTCCA
79287893 TTTTTCT
1 TTTTTCT
79287900 TTTTTCTT
1 TTTTTC-T
79287908 TTTTTCT
1 TTTTTCT
79287915 TTTTT-T
1 TTTTTCT
*
79287921 TATTT-T
1 TTTTTCT
*
79287927 TTTCTCT
1 TTTTTCT
79287934 TTTTTCT
1 TTTTTCT
*
79287941 TTTTATTT
1 TTTT-TCT
79287949 TTTTTCT
1 TTTTTCT
79287956 CTTTTTC-
1 -TTTTTCT
79287963 -TTTTCT
1 TTTTTCT
79287969 TTTTTCCT
1 TTTTT-CT
79287977 TTTTT
1 TTTTT
79287982 TTTGAAATAG
Statistics
Matches: 69, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
5 5 0.07
6 9 0.13
7 29 0.42
8 26 0.38
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:79287910 original size:8 final size:8
Alignment explanation
Indices: 79287893--79287982 Score: 91
Period size: 8 Copynumber: 11.6 Consensus size: 8
79287883 GGCCTCTCCA
79287893 TTTTTC-T
1 TTTTTCTT
79287900 TTTTTCTT
1 TTTTTCTT
79287908 TTTTTCTTT
1 TTTTTC-TT
*
79287917 TTTTTATT
1 TTTTTCTT
79287925 TTTTTCTCT
1 TTTTTCT-T
79287934 TTTTTCTT
1 TTTTTCTT
*
79287942 TTTAT-TT
1 TTTTTCTT
*
79287949 TTTTTCTC
1 TTTTTCTT
79287957 TTTTTC--
1 TTTTTCTT
79287963 -TTTTCTT
1 TTTTTCTT
*
79287970 TTTTCCTT
1 TTTTTCTT
79287978 TTTTT
1 TTTTT
79287983 TTGAAATAGA
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
5 5 0.07
7 12 0.17
8 37 0.54
9 15 0.22
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTCTT
Found at i:79287921 original size:17 final size:16
Alignment explanation
Indices: 79287893--79287984 Score: 94
Period size: 17 Copynumber: 5.4 Consensus size: 16
79287883 GGCCTCTCCA
*
79287893 TTTTTCTTTTTTCTTT
1 TTTTTTTTTTTTCTTT
*
79287909 TTTTCTTTTTTTTATTT
1 TTTT-TTTTTTTTCTTT
*
79287926 TTTTCTCTTTTTTCTTT
1 TTTT-TTTTTTTTCTTT
*
79287943 TTATTTTTTTTCTCTTT
1 TT-TTTTTTTTTTCTTT
79287960 TTCTTTTCTTTTTTCCTTT
1 TT-TTTT-TTTTTT-CTTT
79287979 TTTTTT
1 TTTTTT
79287985 GAAATAGAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
16 4 0.06
17 43 0.67
18 11 0.17
19 6 0.09
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTTTTCTTT
Found at i:79287973 original size:24 final size:23
Alignment explanation
Indices: 79287893--79287973 Score: 99
Period size: 23 Copynumber: 3.4 Consensus size: 23
79287883 GGCCTCTCCA
* *
79287893 TTTTTCTTTTTTCTTTTTTTCTTT
1 TTTTTTTTTTTTCTCTTTTTC-TT
79287917 TTTTTATTTTTTTCTCTTTTTTCTT
1 TTTTT-TTTTTTTCTC-TTTTTCTT
*
79287942 TTTATTTTTTTTCTCTTTTTCTT
1 TTTTTTTTTTTTCTCTTTTTCTT
*
79287965 TTCTTTTTT
1 TTTTTTTTT
79287974 CCTTTTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
23 15 0.30
24 15 0.30
25 14 0.28
26 6 0.12
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (23 bp):
TTTTTTTTTTTTCTCTTTTTCTT
Found at i:79290850 original size:40 final size:40
Alignment explanation
Indices: 79290743--79290945 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
79290733 CGGATGATAA
* * *
79290743 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
79290783 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
79290822 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
79290862 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
79290902 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
79290942 CCGG
1 CCGG
79290946 TTACATCCCG
Statistics
Matches: 144, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 33 0.23
40 111 0.77
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:79296912 original size:22 final size:21
Alignment explanation
Indices: 79296877--79296934 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
79296867 AAAAGGTATG
* * *
79296877 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAAAT
79296898 TACAAAATCATATCTTCTAAAAT
1 TAC-AAATCATATC-TCTAAAAT
* *
79296921 TGCATATCATATCT
1 TACAAATCATATCT
79296935 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:79297000 original size:71 final size:71
Alignment explanation
Indices: 79296913--79297047 Score: 252
Period size: 71 Copynumber: 1.9 Consensus size: 71
79296903 AATCATATCT
*
79296913 TCTAAAATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGT
1 TCTAAAATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTGT
79296978 ATCATA
66 ATCATA
*
79296984 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTG
1 TCTAAAATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTG
79297048 CATATCATTG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (71 bp):
TCTAAAATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTGT
ATCATA
Found at i:79297061 original size:17 final size:19
Alignment explanation
Indices: 79296919--79297063 Score: 166
Period size: 17 Copynumber: 8.2 Consensus size: 19
79296909 ATCTTCTAAA
*
79296919 ATTGCATATCATATCTAAG
1 ATTGCATATCATATCGAAG
*
79296938 ATTGCA-ATCATATCTAAG
1 ATTGCATATCATATCGAAG
*
79296956 ATTG--TATCATATCTAAG
1 ATTGCATATCATATCGAAG
*
79296973 ATTG--TATCATATCTAAG
1 ATTGCATATCATATCGAAG
*
79296990 ATTGCATATCATATCTAAG
1 ATTGCATATCATATCGAAG
79297009 ATTGCA-ATCATATCGAAG
1 ATTGCATATCATATCGAAG
*
79297027 ATTG--TATCATATCTAAG
1 ATTGCATATCATATCGAAG
79297044 ATTGCATATCAT-T-GAAG
1 ATTGCATATCATATCGAAG
79297061 ATT
1 ATT
79297064 ATATTTCCAT
Statistics
Matches: 117, Mismatches: 3, Indels: 14
0.87 0.02 0.10
Matches are distributed among these distances:
17 54 0.46
18 32 0.27
19 31 0.26
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
ATTGCATATCATATCGAAG
Found at i:79297062 original size:71 final size:71
Alignment explanation
Indices: 79296919--79297063 Score: 240
Period size: 71 Copynumber: 2.0 Consensus size: 71
79296909 ATCTTCTAAA
*
79296919 ATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGTATCATA
1 ATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTGTATCATA
*
79296984 TCTAAG
66 TCGAAG
79296990 ATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTGCATATCA
1 ATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTG--TATCA
79297055 T-T-GAAG
64 TATCGAAG
79297061 ATT
1 ATT
79297064 ATATTTCCAT
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
71 63 0.90
72 1 0.01
73 6 0.09
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (71 bp):
ATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTGTATCATATCTAAGATTGTATCATA
TCGAAG
Found at i:79297075 original size:54 final size:53
Alignment explanation
Indices: 79296925--79297055 Score: 228
Period size: 54 Copynumber: 2.5 Consensus size: 53
79296915 TAAAATTGCA
*
79296925 TATCATATCTAAGATTGCA-ATCATATCTAAGATTGTATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCGAAGATTG
*
79296977 TATCATATCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG-TATCATATCGAAGATTG
79297031 TATCATATCTAAGATTGCATATCAT
1 TATCATATCTAAGATTGCATATCAT
79297056 TGAAGATTAT
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
52 19 0.25
53 16 0.21
54 40 0.53
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (53 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTGTATCATATCGAAGATTG
Found at i:79297953 original size:30 final size:27
Alignment explanation
Indices: 79297919--79297973 Score: 74
Period size: 30 Copynumber: 1.9 Consensus size: 27
79297909 ACCTCCAACT
79297919 GAATTAGATCAGTTAACCAATCGATTAACC
1 GAATTAGATCAGTT---CAATCGATTAACC
*
79297949 GAATTAGATCGGTTCAATCGATTAA
1 GAATTAGATCAGTTCAATCGATTAA
79297974 TTCAGTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 11 0.46
30 13 0.54
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
GAATTAGATCAGTTCAATCGATTAACC
Found at i:79300210 original size:14 final size:14
Alignment explanation
Indices: 79300183--79300210 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79300173 GCTTTTATTG
79300183 TTTTATTTTTTTAT
1 TTTTATTTTTTTAT
79300197 TTTTATTTTTTTAT
1 TTTTATTTTTTTAT
79300211 AATTATTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTATTTTTTTAT
Found at i:79300641 original size:12 final size:13
Alignment explanation
Indices: 79300624--79300664 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
79300614 TTTCCATCTA
79300624 TCTTCTTTATT-T
1 TCTTCTTTATTAT
*
79300636 TCTTCTTTATTGT
1 TCTTCTTTATTAT
*
79300649 CCTT-TTTATTAT
1 TCTTCTTTATTAT
79300661 TCTT
1 TCTT
79300665 GTATTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (13 bp):
TCTTCTTTATTAT
Found at i:79300843 original size:18 final size:17
Alignment explanation
Indices: 79300820--79300866 Score: 62
Period size: 15 Copynumber: 2.8 Consensus size: 17
79300810 AGTCAAATTC
79300820 TTGACTTGCGACTTTTTT
1 TTGACTTGCGAC-TTTTT
*
79300838 TTGACTTGCGGC--TTT
1 TTGACTTGCGACTTTTT
79300853 TTGACTTGCGACTT
1 TTGACTTGCGACTT
79300867 GAAAATAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 14 0.56
18 11 0.44
ACGTcount: A:0.11, C:0.19, G:0.21, T:0.49
Consensus pattern (17 bp):
TTGACTTGCGACTTTTT
Found at i:79301168 original size:17 final size:18
Alignment explanation
Indices: 79301131--79301169 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
79301121 TAAATCTAAA
79301131 TAAAACTATTAAGTATAC
1 TAAAACTATTAAGTATAC
* *
79301149 TAAAACT-TTAATTATCC
1 TAAAACTATTAAGTATAC
79301166 TAAA
1 TAAA
79301170 TAAGAAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.36
Consensus pattern (18 bp):
TAAAACTATTAAGTATAC
Found at i:79302634 original size:25 final size:25
Alignment explanation
Indices: 79302594--79302649 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
79302584 TTTTTGTTTC
79302594 TTATAA-ATTATATTTTAAATTTTT
1 TTATAATATTATATTTTAAATTTTT
*
79302618 TTATAATATTA-ATTTTTGAATTTTT
1 TTATAATATTATA-TTTTAAATTTTT
*
79302643 ATATAAT
1 TTATAAT
79302650 TTTTAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (25 bp):
TTATAATATTATATTTTAAATTTTT
Found at i:79308331 original size:13 final size:13
Alignment explanation
Indices: 79308314--79308349 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
79308304 AGCGGAAAAA
79308314 AATATATGAAATG
1 AATATATGAAATG
* *
79308327 GATATACGAAATG
1 AATATATGAAATG
79308340 AATATATGAA
1 AATATATGAA
79308350 TTAGACACAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.28
Consensus pattern (13 bp):
AATATATGAAATG
Found at i:79310983 original size:18 final size:18
Alignment explanation
Indices: 79310945--79310996 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
79310935 TTAAAAACTA
* **
79310945 ACTGCTACTGAATAATTG
1 ACTGATACTGAATAAACG
* *
79310963 ACTGTTATTGAATAAACG
1 ACTGATACTGAATAAACG
79310981 ACTGATACTGAATAAA
1 ACTGATACTGAATAAA
79310997 TGATTATTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (18 bp):
ACTGATACTGAATAAACG
Found at i:79311007 original size:18 final size:18
Alignment explanation
Indices: 79310971--79311026 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
79310961 TGACTGTTAT
*
79310971 TGAATAAACGACTGA-TAC
1 TGAATAAACGA-TTATTAC
*
79310989 TGAATAAATGATTATTAC
1 TGAATAAACGATTATTAC
* *
79311007 TGATTAACCGATTATTAC
1 TGAATAAACGATTATTAC
79311025 TG
1 TG
79311027 TTGACTGACT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 2 0.06
18 30 0.94
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (18 bp):
TGAATAAACGATTATTAC
Found at i:79319665 original size:5 final size:5
Alignment explanation
Indices: 79319655--79319681 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
79319645 GCATAAGCAG
79319655 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
79319682 GGGCAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:79320727 original size:42 final size:42
Alignment explanation
Indices: 79320663--79320749 Score: 104
Period size: 42 Copynumber: 2.1 Consensus size: 42
79320653 CTCATATAAA
* * * *
79320663 TTTTCGTTCAGCTCTATTGAGTTGCTGTTTAACCCTTATTGG
1 TTTTCGTTCAGCTCTATCGAGTTGCCGTTCAACCCTTATGGG
* *
79320705 TTTTTGTTCAGCTCT-TACGAGTTTCCGTTCAACCCTTATGGG
1 TTTTCGTTCAGCTCTAT-CGAGTTGCCGTTCAACCCTTATGGG
79320747 TTT
1 TTT
79320750 CTATTTAGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (42 bp):
TTTTCGTTCAGCTCTATCGAGTTGCCGTTCAACCCTTATGGG
Found at i:79320749 original size:21 final size:21
Alignment explanation
Indices: 79320693--79320750 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 21
79320683 GTTGCTGTTT
* **
79320693 AACCCTTATTGGTTTTTGTTC
1 AACCCTTATGGGTTTCCGTTC
* * * *
79320714 AGCTCTTACGAGTTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
79320735 AACCCTTATGGGTTTC
1 AACCCTTATGGGTTTC
79320751 TATTTAGCTC
Statistics
Matches: 26, Mismatches: 11, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.43
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCGTTC
Found at i:79321493 original size:35 final size:35
Alignment explanation
Indices: 79321447--79321517 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
79321437 GGTTGTATTG
79321447 AAGGTTTTGTTATGGTATATGAGTGTGCTAGATGA
1 AAGGTTTTGTTATGGTATATGAGTGTGCTAGATGA
79321482 AAGGTTTTGTTATGGTATATGAGTGTGCTAGATGA
1 AAGGTTTTGTTATGGTATATGAGTGTGCTAGATGA
79321517 A
1 A
79321518 GTGTTTAGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.27, C:0.03, G:0.31, T:0.39
Consensus pattern (35 bp):
AAGGTTTTGTTATGGTATATGAGTGTGCTAGATGA
Found at i:79325915 original size:21 final size:21
Alignment explanation
Indices: 79325891--79325933 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
79325881 CATAAACACT
79325891 ATTTAAATATTATGTCA-ATTA
1 ATTTAAATATTAT-TCAGATTA
* *
79325912 ATTTCAATCTTATTCAGATTA
1 ATTTAAATATTATTCAGATTA
79325933 A
1 A
79325934 ATAATTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.47
Consensus pattern (21 bp):
ATTTAAATATTATTCAGATTA
Found at i:79328447 original size:21 final size:21
Alignment explanation
Indices: 79328381--79328449 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
79328371 CTAGACATGA
79328381 CCGTGTGT-CAAAACACACGC
1 CCGTGTGTCCAAAACACACGC
* ** * *
79328401 CCGTGTGCCCACCAGACACGG
1 CCGTGTGTCCAAAACACACGC
* *
79328422 TCGTGTGTCCAAAATACACGC
1 CCGTGTGTCCAAAACACACGC
79328443 CCGTGTG
1 CCGTGTG
79328450 GGATCCCTAA
Statistics
Matches: 36, Mismatches: 12, Indels: 1
0.73 0.24 0.02
Matches are distributed among these distances:
20 7 0.19
21 29 0.81
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (21 bp):
CCGTGTGTCCAAAACACACGC
Found at i:79331217 original size:15 final size:16
Alignment explanation
Indices: 79331197--79331234 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
79331187 ACACATACAG
*
79331197 TACAGTGCGA-TAAAT
1 TACAGTACGAGTAAAT
79331212 TACAGTACGAGTAAAT
1 TACAGTACGAGTAAAT
79331228 TACAGTA
1 TACAGTA
79331235 GAACTGCCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.26
Consensus pattern (16 bp):
TACAGTACGAGTAAAT
Found at i:79342215 original size:53 final size:52
Alignment explanation
Indices: 79342067--79342222 Score: 188
Period size: 52 Copynumber: 3.0 Consensus size: 52
79342057 GAAAAAGATC
* * * **
79342067 TGATATATGATTCCGTATAAGACCATAGCCGGGCTATGGCATCTGTACAATG
1 TGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATGATG
* *
79342119 TGATTTGTG-TTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATG
1 TGATATGTGATT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATGATG
** * *
79342171 TGATAATGTGATTCCGTATAAGACCATATTTGGGATATGACATCGGTATGAT
1 TGAT-ATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATGAT
79342223 ATGTGATCCG
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
51 2 0.02
52 46 0.52
53 38 0.43
54 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (52 bp):
TGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATGATG
Found at i:79343042 original size:20 final size:20
Alignment explanation
Indices: 79343017--79343070 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
79343007 CATGGACAGA
79343017 CCACACGGGCATGTTCCAGG
1 CCACACGGGCATGTTCCAGG
* *
79343037 CCACACGGGCGTGTTTCAGG
1 CCACACGGGCATGTTCCAGG
79343057 CCACACGGGCATGT
1 CCACACGGGCATGT
79343071 GCCCCTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (20 bp):
CCACACGGGCATGTTCCAGG
Found at i:79363195 original size:17 final size:17
Alignment explanation
Indices: 79363173--79363205 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
79363163 TTTGTGGTAC
79363173 GATGATAGCGAAGAAGT
1 GATGATAGCGAAGAAGT
79363190 GATGATAGCGAAGAAG
1 GATGATAGCGAAGAAG
79363206 GTTGTTCGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.36, T:0.15
Consensus pattern (17 bp):
GATGATAGCGAAGAAGT
Found at i:79368705 original size:21 final size:20
Alignment explanation
Indices: 79368669--79368723 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
79368659 TAGATATGTA
* *
79368669 AAAAAATCATAGAAAATTAT
1 AAAAAATCATAAAAAAGTAT
*
79368689 TAAAAATCATTAAAAAAGTAT
1 AAAAAATCA-TAAAAAAGTAT
*
79368710 AAAAAATAATAAAA
1 AAAAAATCATAAAA
79368724 TTGTTTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (20 bp):
AAAAAATCATAAAAAAGTAT
Found at i:79373403 original size:43 final size:43
Alignment explanation
Indices: 79373310--79373415 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
79373300 TATCCATGAT
* * * *
79373310 ATGGTCTTACATGTTATCATATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAA
*
79373353 A-GAGTCTTATATGTAATCACATAAT-GATGCCAATGTCCCAGAA
1 ATG-GTCTTACATGTAATCACAT-ATCGATGCCAATGTCCCAGAA
**
79373396 ATGGTCTTACACATAATCAC
1 ATGGTCTTACATGTAATCAC
79373416 GTCTTGTTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
42 1 0.02
43 48 0.92
44 3 0.06
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAA
Found at i:79378548 original size:27 final size:28
Alignment explanation
Indices: 79378511--79378649 Score: 191
Period size: 27 Copynumber: 5.1 Consensus size: 28
79378501 AGCATGGCTG
* *
79378511 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
79378537 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
79378565 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
79378592 CCAGAT-CAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
79378619 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
79378646 CCAG
1 CCAG
79378650 GACGCTTCCT
Statistics
Matches: 105, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 83 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:79379055 original size:8 final size:8
Alignment explanation
Indices: 79379039--79379068 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
79379029 CTCAAAATAC
79379039 CGGCTTTT
1 CGGCTTTT
*
79379047 CGGCATTT
1 CGGCTTTT
79379055 CGGCTTTT
1 CGGCTTTT
79379063 CGGCTT
1 CGGCTT
79379069 GTGCCAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:79382748 original size:46 final size:46
Alignment explanation
Indices: 79382690--79382865 Score: 137
Period size: 46 Copynumber: 3.8 Consensus size: 46
79382680 GGGCTATTGT
*
79382690 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGA
* * *
79382736 GAGCCAGTGTAAGACCATGTCTGGGACAT--ATCT-TCGACTTTGAAACT-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGCAT-TGGCCACATT---A-TGA
* * * * * ** *
79382784 GTGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATG-A
*
79382831 -AGTCAGTGTAAGACATGTCTGGGACATGCATTGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGGC
79382866 TACGAGATGT
Statistics
Matches: 99, Mismatches: 20, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
45 7 0.07
46 45 0.45
47 29 0.29
48 13 0.13
49 5 0.05
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGA
Done.