Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 242 of 332
Found at i:80533884 original size:23 final size:21
Alignment explanation
Indices: 80533858--80533902 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
80533848 TAAGTTTATA
80533858 TTATTTCATAAAAATATATTTTT
1 TTATTT-ATAAAAA-ATATTTTT
* *
80533881 TTATTTTTAAACAATATTTTT
1 TTATTTATAAAAAATATTTTT
80533902 T
1 T
80533903 ACATAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 5 0.25
23 6 0.30
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (21 bp):
TTATTTATAAAAAATATTTTT
Found at i:80536093 original size:20 final size:20
Alignment explanation
Indices: 80536068--80536105 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80536058 CACATGGGAT
80536068 GAATGTCT-TCGATGGGACGA
1 GAATGTCTGT-GATGGGACGA
80536088 GAATGTCTGTGATGGGAC
1 GAATGTCTGTGATGGGAC
80536106 AGATATTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.24, C:0.13, G:0.37, T:0.26
Consensus pattern (20 bp):
GAATGTCTGTGATGGGACGA
Found at i:80538773 original size:27 final size:28
Alignment explanation
Indices: 80538736--80538875 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
80538726 AGCATGGCTG
* *
80538736 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
80538762 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
80538790 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
80538817 CCAGAT-CAGATATTTGTGGCAAAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
80538844 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
80538871 CCAGA
1 CCAGA
80538876 ACGCTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
26 5 0.05
27 83 0.79
28 17 0.16
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:80540572 original size:31 final size:26
Alignment explanation
Indices: 80540495--80540604 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
80540485 CATGAAATTC
* *
80540495 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
80540521 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
80540547 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
80540573 TTATCATAGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
80540599 TTATCA
1 TTATCA
80540605 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:80543823 original size:27 final size:27
Alignment explanation
Indices: 80543789--80543966 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
80543779 TAAATTGTAC
*
80543789 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
80543816 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
80543842 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
80543870 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
80543897 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
80543925 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80543952 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80543967 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:80543850 original size:54 final size:55
Alignment explanation
Indices: 80543789--80543966 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
80543779 TAAATTGTAC
* **
80543789 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
80543844 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
80543897 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
80543952 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80543967 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:80551839 original size:27 final size:27
Alignment explanation
Indices: 80551805--80551982 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
80551795 TAAATTGTAC
*
80551805 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
80551832 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
80551858 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
80551886 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
80551913 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
80551941 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
80551968 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80551983 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:80551866 original size:54 final size:55
Alignment explanation
Indices: 80551805--80551982 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
80551795 TAAATTGTAC
* **
80551805 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
80551860 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
80551913 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
80551968 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80551983 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:80554328 original size:46 final size:48
Alignment explanation
Indices: 80554275--80554681 Score: 262
Period size: 48 Copynumber: 8.6 Consensus size: 48
80554265 ATTGTGTGCT
80554275 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
* ** *
80554321 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTAAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TATTATGAGAGCC
* * * * *
80554369 AGTGTAAGA-CATGTTTGAGACAT-GCATTGGCCTTGA-GATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATG-AGAGCC
** * *
80554415 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-C-TACGA-GATATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGA-GCC
* ** * * *
80554459 AGTGTAAGACCATGCCTGAAACATGGCATCGGCACGTA-TA-AAGATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CATATTATGAGA-GCC
* * * *
80554507 AGTTTAAGACCATATCTGAGACATGGCATCGGCACGGATATGTA--AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-C--ATAT-TATGAGAGCC
* *
80554557 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGATT-TCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT--ATTAT-GAGAGCC
* *
80554606 AGTGTAAGACCATGTCTGGGACATGGCATC-GAC-T-TGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTAT-GA-GAGCC
* * *
80554653 AGTGCAAGAGCATGTCTAGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
80554682 TGGCATTATA
Statistics
Matches: 297, Mismatches: 39, Indels: 49
0.77 0.10 0.13
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 14 0.05
45 13 0.04
46 61 0.21
47 61 0.21
48 70 0.24
49 36 0.12
50 33 0.11
51 3 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCC
Found at i:80554365 original size:48 final size:48
Alignment explanation
Indices: 80554275--80554689 Score: 279
Period size: 46 Copynumber: 8.8 Consensus size: 48
80554265 ATTGTGTGCT
**
80554275 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-TATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTAAGATGAGAGCC
* *
80554321 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTAAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGAGCC
* * * * *
80554369 AGTGTAAGA-CATGTTTGAGACAT-GCATTGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATG-AGAGCC
* * *
80554415 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--TACGA-GATATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGA-GCC
* ** * *
80554459 AGTGTAAGACCATGCCTGAAACATGGCATCGGCACGTATAA-A-GA-TGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TAAGATGAGAGCC
* * * *** * *
80554507 AGTTTAAGACCATATCTGAGACATGGCATCGGCACGGATATGTAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATG--AGAGCC
* ** ** * *
80554557 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAT-GAGAGCC
*
80554606 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TT--GATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAT-GA-GAGCC
* * * *
80554653 AGTGCAAGAGCATGTCTAGGACATGGCATTGGCATTA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTA
80554690 TACCCTATGT
Statistics
Matches: 295, Mismatches: 52, Indels: 41
0.76 0.13 0.11
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 14 0.05
45 12 0.04
46 66 0.22
47 61 0.21
48 62 0.21
49 36 0.12
50 38 0.13
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGAGCC
Found at i:80554569 original size:98 final size:99
Alignment explanation
Indices: 80554459--80554636 Score: 243
Period size: 98 Copynumber: 1.8 Consensus size: 99
80554449 GAGATATGTC
*
80554459 AGTGTAAGACCATGCCTGAAACATGGCATCGG-CACGTATAAAGAT-GTCAGTTTAAGACCATAT
1 AGTGTAAGACCATGCCTGAAACATGGCATCGGCCACG-ATAAAGATAGTCAGTGTAAGACCATAT
80554522 CTGAGACATGGCATCGGCACGGATATGTAAGAGCT
65 CTGAGACATGGCATCGGCACGGATATGTAAGAGCT
* ** * *** *
80554557 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGATAGTCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGCCTGAAACATGGCATCGGCCACGATAAAGATAGTCAGTGTAAGACCATATC
*
80554622 TGGGACATGGCATCG
66 TGAGACATGGCATCG
80554637 ACTTGATGGA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
98 34 0.50
99 34 0.50
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (99 bp):
AGTGTAAGACCATGCCTGAAACATGGCATCGGCCACGATAAAGATAGTCAGTGTAAGACCATATC
TGAGACATGGCATCGGCACGGATATGTAAGAGCT
Found at i:80562958 original size:14 final size:14
Alignment explanation
Indices: 80562939--80562972 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80562929 ATGGTAAGAG
80562939 TGGTATGAACAAAA
1 TGGTATGAACAAAA
**
80562953 TGGTATGAATGAAA
1 TGGTATGAACAAAA
80562967 TGGTAT
1 TGGTAT
80562973 AAACGAAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.26, T:0.29
Consensus pattern (14 bp):
TGGTATGAACAAAA
Found at i:80565540 original size:28 final size:29
Alignment explanation
Indices: 80565500--80565554 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
80565490 CACAAGCGAT
*
80565500 GACATGGGCGTGT-CTAGGCCGTGTGAGG
1 GACACGGGCGTGTGCTAGGCCGTGTGAGG
* *
80565528 GACACGGGCGTGTGTTCGGCCGTGTGA
1 GACACGGGCGTGTGCTAGGCCGTGTGA
80565555 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.13, C:0.20, G:0.45, T:0.22
Consensus pattern (29 bp):
GACACGGGCGTGTGCTAGGCCGTGTGAGG
Found at i:80565637 original size:20 final size:20
Alignment explanation
Indices: 80565612--80565663 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
80565602 GGGGTAAGGG
*
80565612 ACACGGGCGTGTCCCAATGT
1 ACACGGGCGTGTCCCAATGC
*
80565632 ACACGGGTGTGTCCCAATGC
1 ACACGGGCGTGTCCCAATGC
80565652 ACACGGGCGTGT
1 ACACGGGCGTGT
80565664 GCATTGCCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAATGC
Found at i:80570018 original size:21 final size:21
Alignment explanation
Indices: 80569985--80570031 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
80569975 TAAGATAGAC
80569985 CACAAGGCCGTGT-GAGTGGGT
1 CACAAGGCCGTGTGGA-TGGGT
* *
80570006 CACATGGCTGTGTGGATGGGT
1 CACAAGGCCGTGTGGATGGGT
80570027 CACAA
1 CACAA
80570032 TGTAACAGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (21 bp):
CACAAGGCCGTGTGGATGGGT
Found at i:80574217 original size:55 final size:53
Alignment explanation
Indices: 80574117--80574291 Score: 210
Period size: 55 Copynumber: 3.2 Consensus size: 53
80574107 ATGTCTTAAC
* *
80574117 ATGGTCTTACCTGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGA
1 ATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGA
* * *
80574170 ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTT-GA
1 ATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGGA
* * * *
80574224 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 -ATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGA
80574279 ATGGTCTTACATG
1 ATGGTCTTACATG
80574292 ATATCCTTAT
Statistics
Matches: 104, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
52 2 0.02
53 22 0.21
54 35 0.34
55 43 0.41
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
ATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGA
Found at i:80574286 original size:54 final size:54
Alignment explanation
Indices: 80574092--80574299 Score: 233
Period size: 54 Copynumber: 3.9 Consensus size: 54
80574082 TTTCCTTTTT
* * * * * *
80574092 GAACTTACCATTGCCATGTCTTAACATGGTCTTACCTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
** *
80574145 GAACTCACCAATGCCATGCCTTGGA-ATGGTCTTACATGGGA-CCTTTTCCTTATA
1 GAACTCACCAATGCCATGCCTT-GACATGGTCTTACATGATATCC-TTGCCTTATA
* * *
80574199 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
80574254 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
80574300 ATCTTACCAA
Statistics
Matches: 132, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 41 0.31
54 45 0.34
55 42 0.32
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:80574331 original size:47 final size:47
Alignment explanation
Indices: 80574278--80574399 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
80574268 CATGCCTTGG
* * *
80574278 CATGGTCTTACATGATATCCTTATCTTACCAAATGCTATGCTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
* * * *
80574325 TATGGTCTTACATGGTACCCTTGTCCTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
80574372 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
80574400 GAGCCAATGC
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
Found at i:80577422 original size:19 final size:19
Alignment explanation
Indices: 80577400--80577461 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
80577390 TTCAATCCAC
80577400 CATTTCATATTCCATTTCA
1 CATTTCATATTCCATTTCA
*
80577419 CATTTCATCTTCC-TTAATACA
1 CATTTCATATTCCATT--T-CA
80577440 CATTTCATATT-CATTTCTA
1 CATTTCATATTCCATTTC-A
80577459 CAT
1 CAT
80577462 ATTTTTCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 3 0.08
19 17 0.47
20 2 0.06
21 14 0.39
ACGTcount: A:0.27, C:0.26, G:0.00, T:0.47
Consensus pattern (19 bp):
CATTTCATATTCCATTTCA
Found at i:80577460 original size:21 final size:20
Alignment explanation
Indices: 80577400--80577465 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
80577390 TTCAATCCAC
80577400 CATTTCATATTCCA-TTT-CA
1 CATTTCATATT-CATTTTACA
* * *
80577419 CATTTCATCTTCCTTAATACA
1 CATTTCATATTCATT-TTACA
80577440 CATTTCATATTCATTTCTACA
1 CATTTCATATTCATTT-TACA
*
80577461 TATTT
1 CATTT
80577466 TTCCATTTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 1 0.03
19 11 0.31
20 1 0.03
21 23 0.64
ACGTcount: A:0.27, C:0.24, G:0.00, T:0.48
Consensus pattern (20 bp):
CATTTCATATTCATTTTACA
Found at i:80603879 original size:13 final size:13
Alignment explanation
Indices: 80603861--80603885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80603851 TATATGATAT
80603861 GTGTGAAAATTTC
1 GTGTGAAAATTTC
80603874 GTGTGAAAATTT
1 GTGTGAAAATTT
80603886 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:80607329 original size:11 final size:11
Alignment explanation
Indices: 80607315--80607359 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
80607305 AGATAAATAT
80607315 TATTTTATTAA
1 TATTTTATTAA
80607326 TATTTTATTAA
1 TATTTTATTAA
*
80607337 TATTTTAATAAGA
1 TATTTT-ATTA-A
80607350 TATTTTATTA
1 TATTTTATTA
80607360 TTTTATTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
11 17 0.57
12 6 0.20
13 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:80609186 original size:21 final size:21
Alignment explanation
Indices: 80609162--80609233 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
80609152 CTTTCTGAAA
80609162 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * * *
80609183 TGAAA-GATACCATAGGAACATGAT
1 TGAAATG-T---GTAAGACCATGGT
80609207 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
80609229 TGAAA
1 TGAAA
80609234 GATACCATGG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 11 0.30
22 9 0.24
24 9 0.24
25 6 0.16
26 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:80609213 original size:46 final size:46
Alignment explanation
Indices: 80609161--80609388 Score: 289
Period size: 46 Copynumber: 5.0 Consensus size: 46
80609151 GCTTTCTGAA
* *
80609161 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGG-AACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCAT-GGCAACATGAC
*
80609207 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
80609253 AGGAAATGAATAAGACTATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
80609299 ATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
80609345 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
80609389 TCAAAGATAA
Statistics
Matches: 161, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 3 0.02
46 158 0.98
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:80617491 original size:19 final size:19
Alignment explanation
Indices: 80617467--80617506 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80617457 CACAATTAAG
80617467 TAGCATGACTGGGTATAAT
1 TAGCATGACTGGGTATAAT
80617486 TAGCATGACTGGGTATAAT
1 TAGCATGACTGGGTATAAT
80617505 TA
1 TA
80617507 CGTATGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (19 bp):
TAGCATGACTGGGTATAAT
Found at i:80621011 original size:23 final size:22
Alignment explanation
Indices: 80620980--80621024 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
80620970 TTTAAGTTCA
80620980 TTAAAATTTGTT-TGATTTAATTT
1 TTAAAATTT-TTATGA-TTAATTT
*
80621003 TTAATATTTTTATGATTAATTT
1 TTAAAATTTTTATGATTAATTT
80621025 GAAATAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (22 bp):
TTAAAATTTTTATGATTAATTT
Found at i:80626457 original size:12 final size:12
Alignment explanation
Indices: 80626442--80626504 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
80626432 TGTTATCAAT
80626442 TTATTATTATAA
1 TTATTATTATAA
**
80626454 TTATTATTATGGT
1 TTATTATTAT-AA
*
80626467 TTTTTATT-TAA
1 TTATTATTATAA
*
80626478 ATATTATTATTAA
1 TTATTATTA-TAA
80626491 -TATTATTAT-A
1 TTATTATTATAA
80626501 TTAT
1 TTAT
80626505 GAAATAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 10 0.25
12 19 0.47
13 10 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TTATTATTATAA
Found at i:80626948 original size:3 final size:3
Alignment explanation
Indices: 80626940--80626988 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
80626930 ATGAATTAAA
* *
80626940 TAT TAT TA- TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
80626984 TAT TA
1 TAT TA
80626989 ACTAATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:80626957 original size:13 final size:13
Alignment explanation
Indices: 80626939--80626988 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
80626929 TATGAATTAA
80626939 ATATTATTATATT
1 ATATTATTATATT
80626952 ATATTA-T-TATT
1 ATATTATTATATT
80626963 ATAATGTATTATTATT
1 AT-AT-TATTA-TATT
80626979 AATATTATTA
1 -ATATTATTA
80626989 ACTAATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
11 6 0.19
12 3 0.10
13 8 0.26
14 1 0.03
15 5 0.16
16 6 0.19
17 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
ATATTATTATATT
Found at i:80626961 original size:16 final size:16
Alignment explanation
Indices: 80626940--80626986 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
80626930 ATGAATTAAA
80626940 TATTATTATATTATAT
1 TATTATTATATTATAT
* *
80626956 TATTATTATAATGTAT
1 TATTATTATATTATAT
80626972 TATTATTAATATTAT
1 TATTATT-ATATTAT
80626987 TAACTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:80626964 original size:19 final size:21
Alignment explanation
Indices: 80626940--80626986 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
80626930 ATGAATTAAA
80626940 TATTATTATAT-TA-TATTAT
1 TATTATTATATGTATTATTAT
80626959 TATTA-TA-ATGTATTATTAT
1 TATTATTATATGTATTATTAT
*
80626978 TAATATTAT
1 TATTATTAT
80626987 TAACTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 2 0.09
18 4 0.17
19 15 0.65
20 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTATTATATGTATTATTAT
Found at i:80628386 original size:30 final size:30
Alignment explanation
Indices: 80628352--80628409 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
80628342 ATTTTATAGT
*
80628352 TATTTAAAT-AGATAATTATTATTTATTTAA
1 TATTTAAATAAGACAATTATTA-TTATTTAA
* *
80628382 TATTTTAATAAGACATTTATTATTATTT
1 TATTTAAATAAGACAATTATTATTATTT
80628410 TATTATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (30 bp):
TATTTAAATAAGACAATTATTATTATTTAA
Found at i:80630339 original size:30 final size:31
Alignment explanation
Indices: 80630271--80630329 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
80630261 CACCCTTAAA
* * *
80630271 ATATTTGCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
80630302 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
80630330 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:80633365 original size:18 final size:17
Alignment explanation
Indices: 80633304--80633379 Score: 75
Period size: 18 Copynumber: 4.4 Consensus size: 17
80633294 AGAAAATGGA
*
80633304 AAAGTGAATTTGAATTG
1 AAAGTGAAATTGAATTG
80633321 -AA-TGAGAATTGAATTG
1 AAAGTGA-AATTGAATTG
* *
80633337 AATTGTGAATTTGAATTG
1 AA-AGTGAAATTGAATTG
*
80633355 AAAGTGAAATTAACATTG
1 AAAGTGAAATTGA-ATTG
80633373 AAAGTGA
1 AAAGTGA
80633380 TTTGAAATGT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
15 3 0.06
16 11 0.23
17 9 0.19
18 22 0.46
19 3 0.06
ACGTcount: A:0.43, C:0.01, G:0.22, T:0.33
Consensus pattern (17 bp):
AAAGTGAAATTGAATTG
Found at i:80633383 original size:34 final size:33
Alignment explanation
Indices: 80633304--80633385 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 33
80633294 AGAAAATGGA
*
80633304 AAAGTGAATTTGAATTGAATGAGAATTGAATTG
1 AAAGTGAATTTGAATTGAATGAGAATTAAATTG
*
80633337 AATTGTGAATTTGAATTGAAAGTGA-AATTAACATTG
1 AA-AGTGAATTTGAATTG-AA-TGAGAATTAA-ATTG
80633373 AAAGTG-ATTTGAA
1 AAAGTGAATTTGAA
80633386 ATGTGAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
33 2 0.05
34 21 0.50
35 10 0.24
36 9 0.21
ACGTcount: A:0.43, C:0.01, G:0.22, T:0.34
Consensus pattern (33 bp):
AAAGTGAATTTGAATTGAATGAGAATTAAATTG
Found at i:80640988 original size:19 final size:19
Alignment explanation
Indices: 80640964--80641000 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80640954 ACCGAGAACT
80640964 TTAGAAAATTTTTCACTAC
1 TTAGAAAATTTTTCACTAC
**
80640983 TTAGAATTTTTTTCACTA
1 TTAGAAAATTTTTCACTA
80641001 AACAGGGGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.05, T:0.49
Consensus pattern (19 bp):
TTAGAAAATTTTTCACTAC
Found at i:80650214 original size:42 final size:42
Alignment explanation
Indices: 80650124--80650215 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
80650114 ATTAATAGTT
80650124 TATT-AATTTAATACATCATATCAATATCTAGACAAATATTA
1 TATTAAATTTAATACATCATATCAATATCTAGACAAATATTA
* * * *
80650165 AAATAAATTTAATATC-TTATATTAATATCTAGACAAAT-TTA
1 TATTAAATTTAATA-CATCATATCAATATCTAGACAAATATTA
80650206 GTATTAAATT
1 -TATTAAATT
80650216 CATTAAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
41 5 0.12
42 36 0.86
43 1 0.02
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (42 bp):
TATTAAATTTAATACATCATATCAATATCTAGACAAATATTA
Found at i:80650605 original size:19 final size:19
Alignment explanation
Indices: 80650583--80650620 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
80650573 GAGTTTTGGT
*
80650583 TCTCAGGTTCAATTTTCAA
1 TCTCAGGTCCAATTTTCAA
*
80650602 TCTCTGGTCCAATTTTCAA
1 TCTCAGGTCCAATTTTCAA
80650621 GTTCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (19 bp):
TCTCAGGTCCAATTTTCAA
Found at i:80653308 original size:39 final size:39
Alignment explanation
Indices: 80653264--80653500 Score: 375
Period size: 39 Copynumber: 6.1 Consensus size: 39
80653254 ATGCAAGACA
*
80653264 CTGGAAATGTATCCGGGATAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
80653303 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
80653342 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
80653381 CTGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
80653420 CTGGAAATGTATCTGGGCCAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
80653459 CTGGAAATGTATCCAGGTTAAAGTCCCACAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
80653498 CTG
1 CTG
80653501 ATAATATAAT
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 181 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:80655721 original size:25 final size:27
Alignment explanation
Indices: 80655684--80655736 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
80655674 TCAAACATGC
80655684 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
80655710 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
80655736 A
1 A
80655737 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:80660859 original size:12 final size:12
Alignment explanation
Indices: 80660842--80660871 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
80660832 TGTTTGAAAG
80660842 ATAAATAAATGA
1 ATAAATAAATGA
80660854 ATAAATAAATGA
1 ATAAATAAATGA
80660866 ATAAAT
1 ATAAAT
80660872 TTAATTTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (12 bp):
ATAAATAAATGA
Found at i:80666363 original size:37 final size:37
Alignment explanation
Indices: 80666291--80666363 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
80666281 ACAGGTAACC
**
80666291 TGATAAACCATAATTTATACATATTTTTATTCCATGT
1 TGATAAACCATAATTTATACATATTTTTACCCCATGT
**
80666328 TGATAAACTGTAATTTATACATATTTTTACCCCATG
1 TGATAAACCATAATTTATACATATTTTTACCCCATG
80666364 CTTAACGCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (37 bp):
TGATAAACCATAATTTATACATATTTTTACCCCATGT
Found at i:80675686 original size:29 final size:29
Alignment explanation
Indices: 80675644--80675703 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
80675634 TACATGGTCG
80675644 TATCCCTTTGGCAGGATTGAAGCATGACT
1 TATCCCTTTGGCAGGATTGAAGCATGACT
80675673 TATCCCTTTGGCAGGATTGAAGCATGACT
1 TATCCCTTTGGCAGGATTGAAGCATGACT
80675702 TA
1 TA
80675704 CACGGGTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (29 bp):
TATCCCTTTGGCAGGATTGAAGCATGACT
Found at i:80683344 original size:47 final size:47
Alignment explanation
Indices: 80683266--80683576 Score: 505
Period size: 47 Copynumber: 6.6 Consensus size: 47
80683256 CCCTTCGGGA
* * * * * *
80683266 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80683313 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80683360 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80683407 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80683454 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80683501 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80683550 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
80683577 TATTCAAATA
Statistics
Matches: 248, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 203 0.82
49 45 0.18
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80685283 original size:13 final size:13
Alignment explanation
Indices: 80685265--80685289 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80685255 TACTAAATTT
80685265 TCATGGATTCAAA
1 TCATGGATTCAAA
80685278 TCATGGATTCAA
1 TCATGGATTCAA
80685290 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:80693648 original size:19 final size:19
Alignment explanation
Indices: 80693611--80693648 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
80693601 AAATTTTGAT
80693611 AAATAAAGAATATAGTGAA
1 AAATAAAGAATATAGTGAA
80693630 AAATACAAGAATATA-TGAA
1 AAATA-AAGAATATAGTGAA
80693649 TATTGTAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.13, T:0.21
Consensus pattern (19 bp):
AAATAAAGAATATAGTGAA
Found at i:80696395 original size:31 final size:31
Alignment explanation
Indices: 80696357--80696497 Score: 264
Period size: 31 Copynumber: 4.5 Consensus size: 31
80696347 TTTAACGGTT
80696357 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
80696388 ACTGGGCCGAAGCCTTTTCATAAATCACATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
80696419 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
80696450 ACTAGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
80696481 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
80696498 ACTGTAAACG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:80696745 original size:25 final size:25
Alignment explanation
Indices: 80696717--80696786 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
80696707 CTCTTTTAAT
80696717 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
80696742 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80696767 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
80696787 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:80697783 original size:29 final size:29
Alignment explanation
Indices: 80697713--80697798 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 29
80697703 GTAAATCTAC
80697713 AAACCAAGGGTATTTC-AGTAATTTTGT--
1 AAACCAAGGGTATTTCTA-TAATTTTGTAA
* *
80697740 AAACTAATGGTATTTCTATAATTTT-TAA
1 AAACCAAGGGTATTTCTATAATTTTGTAA
*
80697768 AAAGCCAAGGGTATTTCTGTAATTTTGTAA
1 AAA-CCAAGGGTATTTCTATAATTTTGTAA
80697798 A
1 A
80697799 TCAGGGGAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 21 0.43
28 4 0.08
29 19 0.39
30 4 0.08
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (29 bp):
AAACCAAGGGTATTTCTATAATTTTGTAA
Found at i:80697826 original size:27 final size:27
Alignment explanation
Indices: 80697776--80697926 Score: 155
Period size: 27 Copynumber: 5.6 Consensus size: 27
80697766 AAAAAGCCAA
**
80697776 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
* *
80697803 GGGAATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* ** *
80697829 AAGGTATTTCAGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
80697857 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
80697884 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
80697911 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
80697927 CTATCTTATA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.02
27 100 0.96
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:80697872 original size:54 final size:54
Alignment explanation
Indices: 80697721--80697918 Score: 141
Period size: 54 Copynumber: 3.6 Consensus size: 54
80697711 ACAAACCAAG
*** ** * * *
80697721 GGTATTTCAGTAATTTTGTAAACTAATGGTATTTCTATAATTTTTAAAAAGCCA-A
1 GGTATTTCAGTAATTTCACAAACTAGGGGTATTTCGATAA-TTTTACAAA-CTAGA
* *** * * * *
80697776 GGGTATTTCTGTAATTTTGTAAA-TCAGGGGAATTTTGGTAATTTTACAAA-TTGAA
1 -GGTATTTCAGTAATTTCACAAACT-AGGGGTATTTCGATAATTTTACAAACTAG-A
* *
80697831 GGTATTTCAGTAATTTCACAAACTAGTGGTATTTCGATAATTTTACAAACTAGG
1 GGTATTTCAGTAATTTCACAAACTAGGGGTATTTCGATAATTTTACAAACTAGA
** *
80697885 GGTATTTTGGTAATTTTACAAACTAGGGGTATTT
1 GGTATTTCAGTAATTTCACAAACTAGGGGTATTT
80697919 TGGTAATTCT
Statistics
Matches: 113, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
54 69 0.61
55 13 0.12
56 31 0.27
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
GGTATTTCAGTAATTTCACAAACTAGGGGTATTTCGATAATTTTACAAACTAGA
Found at i:80697939 original size:54 final size:54
Alignment explanation
Indices: 80697831--80697956 Score: 146
Period size: 54 Copynumber: 2.3 Consensus size: 54
80697821 ACAAATTGAA
* *
80697831 GGTATTTCAGTAATTTCACAAACTAGTGGTATTTCGATAATTTTACAAACTAGG
1 GGTATTTCAGTAATTTCACAAACTAGGGGTATTTCGATAATTCTACAAACTAGG
** * * * **
80697885 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCTTA-TAGG
1 GGTATTTCAGTAATTTCACAAACTAGGGGTATTTCGATAATTCTA-CAAACTAGG
*
80697939 GGTATTTCAATAATTTCA
1 GGTATTTCAGTAATTTCA
80697957 TAATCGAGGG
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
54 56 0.97
55 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (54 bp):
GGTATTTCAGTAATTTCACAAACTAGGGGTATTTCGATAATTCTACAAACTAGG
Found at i:80697992 original size:27 final size:27
Alignment explanation
Indices: 80697958--80698155 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
80697948 ATAATTTCAT
* *
80697958 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
80697985 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
80698012 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
80698039 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
80698066 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
80698093 AATCGAAGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
80698120 AATCGAGGGTAAAATGGTAATTCTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
80698147 AATCGAGGG
1 AATCGAGGG
80698156 CATTTCAGTA
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:80698074 original size:81 final size:81
Alignment explanation
Indices: 80697958--80698155 Score: 308
Period size: 81 Copynumber: 2.4 Consensus size: 81
80697948 ATAATTTCAT
* * * * *
80697958 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAAGGT
80698022 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
* *
80698039 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAAGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAAGGTA
80698104 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
80698120 AATCGAGGGTAAAATGGTAATTCTAAAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
80698156 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAAGGTA
AAACGGTAATTCTATA
Found at i:80698167 original size:81 final size:81
Alignment explanation
Indices: 80698001--80698175 Score: 260
Period size: 81 Copynumber: 2.2 Consensus size: 81
80697991 GGGTAAAATG
* *
80698001 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAAGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAAA
* *
80698066 AATCGAGGGTAAAACG
66 AATCGAGGGCAAAACA
* *
80698082 GTAATTTTGTAAATCGAAGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAAA
1 GTAATTTTGTAAATCGAAGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAAA
***
80698147 AATCGAGGGCATTTCA
66 AATCGAGGGCAAAACA
*
80698163 GTAATTTAGTAAA
1 GTAATTTTGTAAA
80698176 CTAAAGTATT
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAAGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTAAA
AATCGAGGGCAAAACA
Found at i:80700320 original size:61 final size:60
Alignment explanation
Indices: 80700251--80700375 Score: 198
Period size: 61 Copynumber: 2.1 Consensus size: 60
80700241 AGTAAATTTC
*
80700251 ACTAAATTAATTAACAAATA-ATCGAGATTAGCATTATTTTTAAGTAAAAAAGGTGGTAAAA
1 ACTAAATTAATTAACAAATACA-CGAGATTAACATTATTTTTAAGT-AAAAAGGTGGTAAAA
* *
80700312 ACTAAATTAATTAACAAATACACGGGATTAATATTATTTTTAAGTAAAAAGGTGGTAAAA
1 ACTAAATTAATTAACAAATACACGAGATTAACATTATTTTTAAGTAAAAAGGTGGTAAAA
80700372 ACTA
1 ACTA
80700376 CTAGAAAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
60 19 0.32
61 40 0.67
62 1 0.02
ACGTcount: A:0.49, C:0.07, G:0.13, T:0.31
Consensus pattern (60 bp):
ACTAAATTAATTAACAAATACACGAGATTAACATTATTTTTAAGTAAAAAGGTGGTAAAA
Found at i:80702674 original size:25 final size:25
Alignment explanation
Indices: 80702640--80702726 Score: 129
Period size: 25 Copynumber: 3.5 Consensus size: 25
80702630 TCATTAGGGT
* *
80702640 TACCGATTTATGGCTCGTGAGAGCA
1 TACCAATTTATAGCTCGTGAGAGCA
*
80702665 TACCAATTTATAGCTCGTGAGAGTA
1 TACCAATTTATAGCTCGTGAGAGCA
* *
80702690 TATCAATTTATAGCTCGTAAGAGCA
1 TACCAATTTATAGCTCGTGAGAGCA
80702715 TACCAATTTATA
1 TACCAATTTATA
80702727 TCTCATAAGA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (25 bp):
TACCAATTTATAGCTCGTGAGAGCA
Found at i:80702720 original size:50 final size:50
Alignment explanation
Indices: 80702645--80702741 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
80702635 AGGGTTACCG
* * * *
80702645 ATTTATGGCTCGTGAGAGCATACCAATTTATAGCTCGTGAGAGTATATCA
1 ATTTATAGCTCGTAAGAGCATACCAATTTATAGCTCATAAGAGTATATCA
*
80702695 ATTTATAGCTCGTAAGAGCATACCAATTTATATCTCATAAGAGTATA
1 ATTTATAGCTCGTAAGAGCATACCAATTTATAGCTCATAAGAGTATA
80702742 CCGATCTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (50 bp):
ATTTATAGCTCGTAAGAGCATACCAATTTATAGCTCATAAGAGTATATCA
Found at i:80702735 original size:25 final size:25
Alignment explanation
Indices: 80702640--80702743 Score: 127
Period size: 25 Copynumber: 4.2 Consensus size: 25
80702630 TCATTAGGGT
* * *
80702640 TACCGATTTATGGCTCGTGAGAGCA
1 TACCAATTTATAGCTCGTAAGAGCA
* *
80702665 TACCAATTTATAGCTCGTGAGAGTA
1 TACCAATTTATAGCTCGTAAGAGCA
*
80702690 TATCAATTTATAGCTCGTAAGAGCA
1 TACCAATTTATAGCTCGTAAGAGCA
* * *
80702715 TACCAATTTATATCTCATAAGAGTA
1 TACCAATTTATAGCTCGTAAGAGCA
80702740 TACC
1 TACC
80702744 GATCTTCAGC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 69 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (25 bp):
TACCAATTTATAGCTCGTAAGAGCA
Found at i:80702764 original size:50 final size:50
Alignment explanation
Indices: 80702659--80702767 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
80702649 ATGGCTCGTG
* * * * *
80702659 AGAGCATACCAATTTATAGCTCGTGAGAGTATATCAATTTATAGCTCGTA
1 AGAGCATACCAATTTATAGCTCATAAGAGTATACCAATTTACAGCTCGAA
* *
80702709 AGAGCATACCAATTTATATCTCATAAGAGTATACCGATCTT-CAGCTC-AA
1 AGAGCATACCAATTTATAGCTCATAAGAGTATACCAAT-TTACAGCTCGAA
80702758 ATGAGCATAC
1 A-GAGCATAC
80702768 GATTCACAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 2 0.04
50 46 0.92
51 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (50 bp):
AGAGCATACCAATTTATAGCTCATAAGAGTATACCAATTTACAGCTCGAA
Found at i:80706114 original size:96 final size:97
Alignment explanation
Indices: 80705965--80706244 Score: 234
Period size: 96 Copynumber: 2.9 Consensus size: 97
80705955 ACGTATCGAT
* * * * * * *
80705965 GCCATATCCTAGATATGGTCTTATAC-AAAGTCTCATATT-AGTGTCGATTCCATGTCCAAGACA
1 GCCATATCCCAGATATGGTCTTACACGAGA-TCACATCTTGA-TGCCGATGCCATGTCCAAGACA
* * * * *
80706028 TGGTCTTATACGGGACCTCAC-ATCGATGCTAAT
64 TGGTCTTACACGGGAACTCACTAACGATGCCAAA
* * *
80706061 GCCATATCCCAGATATGGTCTTACATGGGATCTCATGC-TGATGCCGATGCCATGTCCCAA-ACA
1 GCCATATCCCAGATATGGTCTTACACGAGATCACAT-CTTGATGCCGATGCCATGT-CCAAGACA
* *
80706124 TAGTCTTACAC--GAAATCACTTAACGATGCCAAA
64 TGGTCTTACACGGGAACTCAC-TAACGATGCCAAA
* * * * *
80706157 GCTATTTCCCTGATATGGTCTTATACGAGATCACATCTTGATGCCGATGCCATGGGCC-AGACAT
1 GCCATATCCCAGATATGGTCTTACACGAGATCACATCTTGATGCCGATGCCAT-GTCCAAGACAT
* *
80706221 GGTCTTACACGGGATCTCATTAAC
65 GGTCTTACACGGGAACTCACTAAC
80706245 CATGGTGTCA
Statistics
Matches: 146, Mismatches: 27, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
94 6 0.04
95 2 0.01
96 122 0.84
97 11 0.08
98 5 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (97 bp):
GCCATATCCCAGATATGGTCTTACACGAGATCACATCTTGATGCCGATGCCATGTCCAAGACATG
GTCTTACACGGGAACTCACTAACGATGCCAAA
Found at i:80717122 original size:22 final size:22
Alignment explanation
Indices: 80717094--80717191 Score: 94
Period size: 22 Copynumber: 4.4 Consensus size: 22
80717084 GGCTGATCGT
*
80717094 TTCAGCTCTTATGAGCTTACCG
1 TTCAGCTCTTAGGAGCTTACCG
*
80717116 TTCAGCTCTTCGGAGCTTACCG
1 TTCAGCTCTTAGGAGCTTACCG
**
80717138 TTTCAG-TCCTTAAGG-GCTTACTAT
1 -TTCAGCT-CTT-AGGAGCTTAC-CG
80717162 TTCAGCTC-TACGGAGCTTACCG
1 TTCAGCTCTTA-GGAGCTTACCG
80717184 TTCAGCTC
1 TTCAGCTC
80717192 AATTGAGCTT
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
21 1 0.02
22 32 0.52
23 26 0.42
24 3 0.05
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.35
Consensus pattern (22 bp):
TTCAGCTCTTAGGAGCTTACCG
Found at i:80724467 original size:48 final size:48
Alignment explanation
Indices: 80724344--80724561 Score: 226
Period size: 48 Copynumber: 4.6 Consensus size: 48
80724334 TGAGATCCCA
* * * * * * *
80724344 TGTAAGACCATGTCTGGGACATGACATTGGAATCGAGA--TGAGATCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGTGTTAG
* ** *
80724390 TATAAGACCATGTCTGGGACATGGCATCGGGGTTGATATGTGTGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGTGTTAG
* * * ** * *
80724438 TGTAAGACCATGTCTTGGACATGGTATCGGCCTCGACGTGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGTGTTAG
*
80724486 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAT-TTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTG-TGTTAG
*
80724534 TGTAAGACCATGTCTGGTACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
80724562 ATTATGAGAC
Statistics
Matches: 140, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
46 31 0.22
48 109 0.78
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGTGTTAG
Found at i:80728737 original size:29 final size:31
Alignment explanation
Indices: 80728705--80728762 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
80728695 TGTACATTAT
*
80728705 ATATATATGCTGAA-TT-AAGT-TGTAAAAGA
1 ATATAAATG-TGAAGTTGAAGTATGTAAAAGA
80728734 ATATAAATGTGAAGTTGAAGTATGTAAAA
1 ATATAAATGTGAAGTTGAAGTATGTAAAA
80728763 TATGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 4 0.16
31 7 0.28
ACGTcount: A:0.47, C:0.02, G:0.19, T:0.33
Consensus pattern (31 bp):
ATATAAATGTGAAGTTGAAGTATGTAAAAGA
Found at i:80734111 original size:22 final size:22
Alignment explanation
Indices: 80734066--80734125 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
80734056 CCACAGCTCG
* **
80734066 TATGAGCTTACCATTTCAGCTCT
1 TATGAGCTTACC-GTTCAAATCT
80734089 TATGAGCTTACCGTTCAAATCT
1 TATGAGCTTACCGTTCAAATCT
**
80734111 TCGGAGCTTACCGTT
1 TATGAGCTTACCGTT
80734126 TCAGACCTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 20 0.62
23 12 0.38
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (22 bp):
TATGAGCTTACCGTTCAAATCT
Found at i:80734143 original size:45 final size:46
Alignment explanation
Indices: 80734069--80734177 Score: 125
Period size: 45 Copynumber: 2.4 Consensus size: 46
80734059 CAGCTCGTAT
* * *
80734069 GAGCTTACCATTTCAGCTCTTATGAGCTTACCGT-TCAAATCTTCG
1 GAGCTTACCGTTTCAGCTCTTAAGAGCTTACCGTCTCAAATCTACG
* **
80734114 GAGCTTACCGTTTCAGAC-CTTAAGGGCTTACCGTCTCAGCTCTACG
1 GAGCTTACCGTTTCAG-CTCTTAAGAGCTTACCGTCTCAAATCTACG
*
80734160 GAGCTTATCG-TTCAGCTC
1 GAGCTTACCGTTTCAGCTC
80734178 AATTTAGCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
44 1 0.02
45 35 0.65
46 18 0.33
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.32
Consensus pattern (46 bp):
GAGCTTACCGTTTCAGCTCTTAAGAGCTTACCGTCTCAAATCTACG
Found at i:80734165 original size:23 final size:23
Alignment explanation
Indices: 80734069--80734177 Score: 93
Period size: 23 Copynumber: 4.8 Consensus size: 23
80734059 CAGCTCGTAT
* *
80734069 GAGCTTACCATTTCAGCTCTTA-T
1 GAGCTTACC-GTTCAGCTCTTACG
**
80734092 GAGCTTACCGTTCAAATCTT-CG
1 GAGCTTACCGTTCAGCTCTTACG
*
80734114 GAGCTTACCGTTTCAGAC-CTTAAG
1 GAGCTTACCG-TTCAG-CTCTTACG
80734138 G-GCTTACCGTCTCAGCTC-TACG
1 GAGCTTACCGT-TCAGCTCTTACG
*
80734160 GAGCTTATCGTTCAGCTC
1 GAGCTTACCGTTCAGCTC
80734178 AATTTAGCTT
Statistics
Matches: 70, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
22 31 0.44
23 37 0.53
24 2 0.03
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.32
Consensus pattern (23 bp):
GAGCTTACCGTTCAGCTCTTACG
Found at i:80736377 original size:27 final size:27
Alignment explanation
Indices: 80736344--80736865 Score: 672
Period size: 27 Copynumber: 19.3 Consensus size: 27
80736334 CCAAAGTACT
80736344 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
80736371 CTTGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
80736398 CTCGATTTTTAAAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
80736425 CTC-AGTTTATAGAATTACCGTTTTACC
1 CTCGA-TTTATAGAATTACCGTTTTACC
* *
80736452 CTTGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
80736479 CTC-AGTTTATAGAATTACCATTTTACC
1 CTCGA-TTTATAGAATTACCGTTTTACC
* * * *
80736506 CTTGATTTACAAAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* **
80736533 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTATAGAATTACCGTTTTACC
*
80736560 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* * * *
80736587 CTCAATTTGTAAAATTACTGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
80736614 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* * **
80736641 CTCAATTTACAGAATTACTATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* * **
80736668 CTCGATTTACAAAATTATTGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
80736695 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
**
80736722 CTCGATTTATAGAATTACTATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
80736749 CTCGATTTACAGAATTACCGGTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
*
80736776 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
80736803 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACC
* *
80736830 CTCGATTTATAGAATTACTGTTTTATC
1 CTCGATTTATAGAATTACCGTTTTACC
80736857 CTCGATTTA
1 CTCGATTTA
80736866 CAAAATTATT
Statistics
Matches: 435, Mismatches: 54, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.01
27 429 0.99
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTATAGAATTACCGTTTTACC
Found at i:80736907 original size:27 final size:27
Alignment explanation
Indices: 80736862--80737021 Score: 137
Period size: 27 Copynumber: 5.9 Consensus size: 27
80736852 TTATCCTCGA
* * * *
80736862 TTTACAAAATTATTGAAATACCCTTAG
1 TTTATAAAATTACTAAAATACCCCTAG
* * *
80736889 TTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACTAAAATACCCCTAG
* * *
80736915 ATCAGTAAAATTACCAAAATACCCCTAG
1 TTTA-TAAAATTACTAAAATACCCCTAG
* *
80736943 TTTGTAAAATTACTAAAATACCCCTGG
1 TTTATAAAATTACTAAAATACCCCTAG
* *
80736970 TTTGTAAAATTACTAAAATACCCCTGAC
1 TTTATAAAATTACTAAAATACCCCT-AG
*
80736998 TTGTAT--AATTACCAAAATACCCCT
1 TT-TATAAAATTACTAAAATACCCCT
80737022 GATTTGTGAA
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 6 0.05
27 95 0.86
28 8 0.07
29 2 0.02
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACTAAAATACCCCTAG
Found at i:80736952 original size:81 final size:81
Alignment explanation
Indices: 80736867--80737044 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 81
80736857 CTCGATTTAC
* *
80736867 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTACC
1 AAAATTATTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTACC
80736930 AAAATACCCCT-AGTTTGT
64 AAAATACCCCTGA-TTTGT
* * ** * * *
80736948 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGACTTGTATAATTACCAA
1 AAAATTATTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
80737013 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
* *
80737029 GAAATTATCAAAATAC
1 AAAATTATTAAAATAC
80737045 TCTCGATTTG
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
81 76 0.93
82 6 0.07
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTATTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:80737022 original size:27 final size:27
Alignment explanation
Indices: 80736894--80737074 Score: 199
Period size: 27 Copynumber: 6.7 Consensus size: 27
80736884 CTTAGTTTAC
**
80736894 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
80736921 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* *
80736948 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
80736975 AAAATTACTAAAATACCCCTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
80737002 ATAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
80737029 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* *
80737056 ATAA-TATCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
80737075 ATAGGGTAGA
Statistics
Matches: 133, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 14 0.11
27 115 0.86
28 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:80737122 original size:53 final size:54
Alignment explanation
Indices: 80737065--80737172 Score: 173
Period size: 53 Copynumber: 2.0 Consensus size: 54
80737055 TATAATATCA
* *
80737065 AAATACCCCTATAGGGTAGAATTACCGAAATA-CCCTTTAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCG
* *
80737118 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCG
80737172 A
1 A
80737173 GATGCCTTGT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 29 0.58
54 21 0.42
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (54 bp):
AAATACCCCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCG
Found at i:80737193 original size:26 final size:27
Alignment explanation
Indices: 80737065--80737196 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
80737055 TATAATATCA
* *
80737065 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
80737092 AAATACCCTT-TAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
80737118 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
80737145 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
80737172 AGAT-GCCTTGTAAGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
80737197 ATTTTGCCCT
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 43 0.45
27 52 0.55
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:80737606 original size:6 final size:6
Alignment explanation
Indices: 80737597--80737735 Score: 106
Period size: 6 Copynumber: 23.0 Consensus size: 6
80737587 TTGCATTCAC
* *
80737597 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
80737646 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * ** * * *
80737694 ATTCTC ATTTTG GTTCCA ATTCTG ATTATG TTTCTT ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
80737736 TAATGGGCTA
Statistics
Matches: 102, Mismatches: 22, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
5 6 0.06
6 89 0.87
7 5 0.05
8 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:80737662 original size:30 final size:30
Alignment explanation
Indices: 80737597--80737736 Score: 167
Period size: 30 Copynumber: 4.6 Consensus size: 30
80737587 TTGCATTCAC
*
80737597 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
80737628 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
80737658 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* * *
80737688 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACTAATTCTG
* * *
80737718 ATTATGTTTCTTATTCTGT
1 ATTCTGATTCTGATTCTGT
80737737 AATGGGCTAA
Statistics
Matches: 96, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
29 3 0.03
30 68 0.71
31 25 0.26
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:80739477 original size:26 final size:26
Alignment explanation
Indices: 80739447--80739497 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
80739437 CACCAATGAA
*
80739447 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
80739473 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
80739498 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:80739509 original size:102 final size:102
Alignment explanation
Indices: 80739313--80739574 Score: 406
Period size: 102 Copynumber: 2.6 Consensus size: 102
80739303 TAACCGTTAT
* *
80739313 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
80739378 AATCAGCACATAGCAACCCCCTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
80739415 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
80739478 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTT--CATTTCAAAGATA
* * **
80739517 TGGTGGATCA-CGCACATAGCACCACC-ATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
80739575 TTTATATACA
Statistics
Matches: 149, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
100 28 0.19
101 31 0.21
102 89 0.60
103 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (102 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
Found at i:80739933 original size:29 final size:29
Alignment explanation
Indices: 80739900--80739963 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
80739890 TAATCCACCA
80739900 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
80739929 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
80739959 CCCAA
1 CCCAA
80739964 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:80739937 original size:30 final size:30
Alignment explanation
Indices: 80739907--80739963 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80739897 CCACCCAACT
80739907 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
80739936 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
80739964 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:80747046 original size:104 final size:105
Alignment explanation
Indices: 80746791--80747058 Score: 459
Period size: 105 Copynumber: 2.6 Consensus size: 105
80746781 TAACCGTTAT
* *
80746791 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
80746856 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
80746896 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
80746960 GAATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* * **
80747000 TGGTGGATCACGCACATAGCACCACCAATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
80747059 TTTATATACA
Statistics
Matches: 155, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
104 71 0.46
105 84 0.54
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:80747419 original size:29 final size:29
Alignment explanation
Indices: 80747386--80747449 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
80747376 TAATCCACCA
80747386 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
80747415 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
80747445 CCCAA
1 CCCAA
80747450 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:80747423 original size:30 final size:30
Alignment explanation
Indices: 80747393--80747449 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
80747383 CCACCCAACT
80747393 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
80747422 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
80747450 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:80750224 original size:6 final size:6
Alignment explanation
Indices: 80750213--80750265 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
80750203 GCAAATGGAT
* *
80750213 CATTTC CATTTC CATTTC TATTAT- CATTTC CATTTC CATTTC TATTTC
1 CATTTC CATTTC CATTTC CATT-TC CATTTC CATTTC CATTTC CATTTC
80750261 CATTT
1 CATTT
80750266 TTGAAAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
5 1 0.02
6 39 0.95
7 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (6 bp):
CATTTC
Found at i:80750265 original size:24 final size:24
Alignment explanation
Indices: 80750211--80750258 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
80750201 TTGCAAATGG
80750211 ATCATTTCCATTTCCATTTCTATT
1 ATCATTTCCATTTCCATTTCTATT
80750235 ATCATTTCCATTTCCATTTCTATT
1 ATCATTTCCATTTCCATTTCTATT
80750259 TCCATTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.00, T:0.54
Consensus pattern (24 bp):
ATCATTTCCATTTCCATTTCTATT
Found at i:80751212 original size:16 final size:17
Alignment explanation
Indices: 80751193--80751245 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
80751183 AAATAGATAT
80751193 TTATT-TAAATATTAAA
1 TTATTATAAATATTAAA
*
80751209 TTATTATAATTATT-AA
1 TTATTATAAATATTAAA
* *
80751225 TTATTATTAATATTATA
1 TTATTATAAATATTAAA
80751242 TTAT
1 TTAT
80751246 AATATGAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 19 0.61
17 12 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATTATAAATATTAAA
Found at i:80751862 original size:16 final size:17
Alignment explanation
Indices: 80751838--80751871 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
80751828 GTATTGATAT
*
80751838 TTGAGTTGAAT-GAGAA
1 TTGAATTGAATGGAGAA
80751854 TTGAATTGAATGGAGAA
1 TTGAATTGAATGGAGAA
80751871 T
1 T
80751872 GTGTATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.32
Consensus pattern (17 bp):
TTGAATTGAATGGAGAA
Found at i:80752089 original size:23 final size:22
Alignment explanation
Indices: 80752063--80752114 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
80752053 AGGCACTTTA
*
80752063 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-ATCAGGCACCTCG
* *
80752086 TGTGCCG-AATCAGGCATCTCG
1 TGTGTCGTAATCAGGCACCTCG
80752107 TGTGTCGT
1 TGTGTCGT
80752115 TTTAGTCACT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 17 0.71
22 1 0.04
23 6 0.25
ACGTcount: A:0.13, C:0.25, G:0.29, T:0.33
Consensus pattern (22 bp):
TGTGTCGTAATCAGGCACCTCG
Found at i:80757510 original size:16 final size:17
Alignment explanation
Indices: 80757486--80757519 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
80757476 GTATTGATAT
*
80757486 TTGAGTTGAATG-AGAA
1 TTGAATTGAATGAAGAA
80757502 TTGAATTGAATGAAGAA
1 TTGAATTGAATGAAGAA
80757519 T
1 T
80757520 GTGTATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.32
Consensus pattern (17 bp):
TTGAATTGAATGAAGAA
Found at i:80761715 original size:53 final size:54
Alignment explanation
Indices: 80761647--80761853 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
80761637 TTCCTTTTTA
* * *
80761647 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
80761700 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
80761754 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
80761809 AACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80761854 AAACCTTAAT
Statistics
Matches: 124, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 46 0.37
54 37 0.30
55 41 0.33
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:80766768 original size:15 final size:15
Alignment explanation
Indices: 80766748--80766778 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80766738 GTATGCTTAT
80766748 CTCATATACGCATGA
1 CTCATATACGCATGA
80766763 CTCATATACGCATGA
1 CTCATATACGCATGA
80766778 C
1 C
80766779 ATGCTATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (15 bp):
CTCATATACGCATGA
Found at i:80770296 original size:19 final size:19
Alignment explanation
Indices: 80770260--80770298 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
80770250 TATCACAATT
*
80770260 ATATTATAACATAATATAA
1 ATATTATAACAAAATATAA
80770279 ATATTATAA-AAAATTATAA
1 ATATTATAACAAAA-TATAA
80770298 A
1 A
80770299 ACATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
ATATTATAACAAAATATAA
Found at i:80771198 original size:46 final size:46
Alignment explanation
Indices: 80771146--80771237 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
80771136 ATAATGACCC
*
80771146 AAGCTCTCTTTATATATGGATAGTTCAGAGAGAGTTCAACTAGGAT
1 AAGCTCTCTTTATATATGGAGAGTTCAGAGAGAGTTCAACTAGGAT
80771192 AAGCTCTCTTTATATATGGAGAGTTCAGAGAGAGTTCAACTAGGAT
1 AAGCTCTCTTTATATATGGAGAGTTCAGAGAGAGTTCAACTAGGAT
80771238 TAGAATTAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.32
Consensus pattern (46 bp):
AAGCTCTCTTTATATATGGAGAGTTCAGAGAGAGTTCAACTAGGAT
Found at i:80771305 original size:37 final size:39
Alignment explanation
Indices: 80771252--80771347 Score: 97
Period size: 42 Copynumber: 2.4 Consensus size: 39
80771242 ATTAAACAAA
* *
80771252 TTAATATTAAATTAATA-A-AATATTATCTAGACAAATAT
1 TTAAT-TTAATTTAATACATAATAATATCTAGACAAATAT
* *
80771290 TTAATTTAATTTAATATCTCATATTAATATCTAGATAAATAT
1 TTAATTTAATTTAATA---CATAATAATATCTAGACAAATAT
*
80771332 TAAATTTAATTTAATA
1 TTAATTTAATTTAATA
80771348 TTAAATTCAT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
37 10 0.21
38 5 0.10
41 1 0.02
42 32 0.67
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (39 bp):
TTAATTTAATTTAATACATAATAATATCTAGACAAATAT
Found at i:80775056 original size:35 final size:34
Alignment explanation
Indices: 80775012--80775082 Score: 133
Period size: 35 Copynumber: 2.1 Consensus size: 34
80775002 CTTTTTGCCT
80775012 AAAAATAATTCCGTTCATCTATTTATTCACCTAC
1 AAAAATAATTCCGTTCATCTATTTATTCACCTAC
80775046 AAAAACTAATTCCGTTCATCTATTTATTCACCTAC
1 AAAAA-TAATTCCGTTCATCTATTTATTCACCTAC
80775081 AA
1 AA
80775083 CTGATTTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 5 0.14
35 31 0.86
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.37
Consensus pattern (34 bp):
AAAAATAATTCCGTTCATCTATTTATTCACCTAC
Found at i:80785024 original size:7 final size:7
Alignment explanation
Indices: 80785012--80785036 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
80785002 ATATATTTGT
80785012 GTTTTAC
1 GTTTTAC
80785019 GTTTTAC
1 GTTTTAC
80785026 GTTTTAC
1 GTTTTAC
80785033 GTTT
1 GTTT
80785037 CGGTTATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.16, T:0.60
Consensus pattern (7 bp):
GTTTTAC
Found at i:80792107 original size:33 final size:33
Alignment explanation
Indices: 80792069--80792167 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
80792059 GACTGAGTGG
*
80792069 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* **
80792102 GAGTGTTTTGCTGCTGGACAGGAGCTAAAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* *
80792135 GAGTGTTTTGTTGTTGGACAAGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
80792168 CAAGAAGAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.21, C:0.09, G:0.37, T:0.32
Consensus pattern (33 bp):
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Found at i:80798072 original size:9 final size:9
Alignment explanation
Indices: 80798058--80798089 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
80798048 AACTTGGTGC
80798058 ATTTTGTTT
1 ATTTTGTTT
80798067 ATTTTGTTT
1 ATTTTGTTT
80798076 ATTTTGTTT
1 ATTTTGTTT
80798085 ATTTT
1 ATTTT
80798090 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:80802530 original size:9 final size:9
Alignment explanation
Indices: 80802516--80802547 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
80802506 AACTTGGTGC
80802516 ATTTTGTTT
1 ATTTTGTTT
80802525 ATTTTGTTT
1 ATTTTGTTT
80802534 ATTTTGTTT
1 ATTTTGTTT
80802543 ATTTT
1 ATTTT
80802548 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:80802655 original size:23 final size:23
Alignment explanation
Indices: 80802625--80802673 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
80802615 ATTGAAACAA
80802625 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
80802648 CATAATGATAGCTAATATGCTTT
1 CATAATGATAGCTAATATGCTTT
80802671 CAT
1 CAT
80802674 CTTTTTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (23 bp):
CATAATGATAGCTAATATGCTTT
Found at i:80809089 original size:17 final size:18
Alignment explanation
Indices: 80809067--80809114 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 18
80809057 TTTTAAGTAT
80809067 TATGTCAAAAAAT-TTGA
1 TATGTCAAAAAATATTGA
*
80809084 TATGTCAAAAACTATTGA
1 TATGTCAAAAAATATTGA
80809102 TATTGTTCAAAAA
1 TA-TG-TCAAAAA
80809115 TAATAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 12 0.44
18 6 0.22
19 2 0.07
20 7 0.26
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.35
Consensus pattern (18 bp):
TATGTCAAAAAATATTGA
Found at i:80810104 original size:7 final size:6
Alignment explanation
Indices: 80810063--80810103 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
80810053 ATAATTTAAT
*
80810063 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
80810104 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:80810104 original size:20 final size:20
Alignment explanation
Indices: 80810066--80810105 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
80810056 ATTTAATAAA
**
80810066 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
80810086 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
80810106 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:80810137 original size:9 final size:9
Alignment explanation
Indices: 80810123--80810181 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
80810113 TTTATACAAA
*
80810123 TAATTCGAT
1 TAATTCGGT
80810132 TAATTCGGT
1 TAATTCGGT
* *
80810141 CAATTCGGG
1 TAATTCGGT
80810150 TAATTCGGT
1 TAATTCGGT
* *
80810159 CAATTCGAT
1 TAATTCGGT
*
80810168 TAATTTGGT
1 TAATTCGGT
80810177 TAATT
1 TAATT
80810182 TTATACTTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:80810181 original size:18 final size:18
Alignment explanation
Indices: 80810124--80810172 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
80810114 TTATACAAAT
80810124 AATTCGATTAATTCGGTC
1 AATTCGATTAATTCGGTC
**
80810142 AATTCGGGTAATTCGGTC
1 AATTCGATTAATTCGGTC
80810160 AATTCGATTAATT
1 AATTCGATTAATT
80810173 TGGTTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (18 bp):
AATTCGATTAATTCGGTC
Found at i:80811584 original size:17 final size:17
Alignment explanation
Indices: 80811562--80811596 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
80811552 TAGAAGAACC
*
80811562 CCAAATGAATTATCTAA
1 CCAAATAAATTATCTAA
80811579 CCAAATAAATTATCTAA
1 CCAAATAAATTATCTAA
80811596 C
1 C
80811597 ATCCCAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.29
Consensus pattern (17 bp):
CCAAATAAATTATCTAA
Found at i:80818335 original size:51 final size:51
Alignment explanation
Indices: 80818275--80818377 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
80818265 TTTGGAAACT
*
80818275 TAGAAAAATTTCAACCATATAGGGGTCACACGCCCATGTGAACAGGCCGTG
1 TAGAAAAATTTCAACCATACAGGGGTCACACGCCCATGTGAACAGGCCGTG
*
80818326 TAGAAAAATTTCAACCATACAGGGGTCACACGCCCGTGTGAACAGGCCGTG
1 TAGAAAAATTTCAACCATACAGGGGTCACACGCCCATGTGAACAGGCCGTG
80818377 T
1 T
80818378 GCCTTAAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (51 bp):
TAGAAAAATTTCAACCATACAGGGGTCACACGCCCATGTGAACAGGCCGTG
Found at i:80819644 original size:40 final size:40
Alignment explanation
Indices: 80819583--80819679 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
80819573 ACTCGATATC
*
80819583 TCGCACACTAAGTGCCGTATATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
* * * * **
80819623 TCGCATACTAAGTGCTATATATAGCTGAAGCTATGTTGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
80819663 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
80819680 CAAATAACCA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
Found at i:80821799 original size:460 final size:459
Alignment explanation
Indices: 80820909--80821823 Score: 1429
Period size: 460 Copynumber: 2.0 Consensus size: 459
80820899 CTCAAGTTCC
*
80820909 CATGTAGCTTCTTCAACCCCGTGTCGATACCATAATACTTTCACTAATGTGATTATCTTATTTCT
1 CATGTAGCTTCTTCAACCCCGTGTCAATACCATAATACTTTCACTAATGTGATTATCTTATTTCT
* ** * *
80820974 CAGTTCTTTGATCTCACAAGCTGAAATTCGAATTGGTTCTTCAGCATATGACATATCATATTGAA
66 CAGTTCTTTGATCTCACAAGCTAAAATTCGAACCGATTCTTCAGCATATGACATATCAGATTGAA
** * * *
80821039 TTTCAACCTCGGTCGGGGAAATGACTTGTGATGGGTCAGATGGTATCATCGAAGCATCGACACAT
131 TTTCAACCTCGACCGGGGAAATGACATGTGAAGGGTCAGATGGGATCATCGAAGCATCGACACAT
*
80821104 GAAACACATTATGTATTTTCTCTAACTCAGACAGTAAAGATAGTCGATATGCCACTGGCCCAACT
196 GAAACACATTATGTATTTTCTCTAACTCAGACAGTAAAGATAGTCGACATGCCACTGGCCCAACT
80821169 CGCTCAGTAATCTCATACGGTCCGATGAATCGCGAACTCAATTTCCCTTTCTGACCAAACCGCAA
261 CGCTCAGTAATCTCATACGGTCCGATGAATCGCGAACTCAATTTCCCTTTCTGACCAAACCGCAA
* *
80821234 TATCTTATTCCACGGCGACACTTTTAAAAACACTTTATCCCTAATGTAGAACTCAATATCTTTCC
326 TATCTTATTCCACGGCGACACTTTTAAAAACACTTTATCCCCAATCTAGAACTCAATATCTTTCC
* * *
80821299 ATTTCAAGGCTGCACACAATTTCTGTCGATTCGGAGCTGCTTTCAAACTATCGCGAATTACTTTC
391 ATTTCAAGGCTGCACACAATTTCTGTCGATCCGAAGCTGCTTTCAAACTATCACGAATTACTTTC
80821364 AATA
456 AATA
* * * *
80821368 CATGTAGCTTCTTCAACCTCGTGTCAATTCCATAATACTTTCACTAATGTGATTCTCTTATTTTT
1 CATGTAGCTTCTTCAACCCCGTGTCAATACCATAATACTTTCACTAATGTGATTATCTTATTTCT
* * * * * *
80821433 TAGTTTTTTGGTCTCATAAGCTAAAATTCGAACCGATTCTTCAGCATATGACATGTTAGATTGAA
66 CAGTTCTTTGATCTCACAAGCTAAAATTCGAACCGATTCTTCAGCATATGACATATCAGATTGAA
* *
80821498 TTTCAACCTCGACCGGGGAAATGCCATGTGAAGGGTC-GAATCGGGATCGTCGAAGCATCGACAC
131 TTTCAACCTCGACCGGGGAAATGACATGTGAAGGGTCAG-AT-GGGATCATCGAAGCATCGACAC
80821562 ATGAAACACATTATGTATTTTCTCTAACTCAGACAGTAAAGATAGTCGACATGCCACTGGCCCAA
194 ATGAAACACATTATGTATTTTCTCTAACTCAGACAGTAAAGATAGTCGACATGCCACTGGCCCAA
* * * *
80821627 CTCGCTCAGTAATTTCATACGGTCTGATGAATCGCGGACTCAATTTCCCTTTCCT-ACCAAACTG
259 CTCGCTCAGTAATCTCATACGGTCCGATGAATCGCGAACTCAATTTCCCTTT-CTGACCAAACCG
*
80821691 CAATATCTTATTCCACGGTGACACTTTTAAAAACACTTTATCCCCAATCTAGAACTCAATATCTT
323 CAATATCTTATTCCACGGCGACACTTTTAAAAACACTTTATCCCCAATCTAGAACTCAATATCTT
* * * * * *
80821756 TCTATTTCAAGTCTGCATACGATTTTTGTTGATCCGAAGCTGCTTTCAAACTATCACGAATTACT
388 TCCATTTCAAGGCTGCACACAATTTCTGTCGATCCGAAGCTGCTTTCAAACTATCACGAATTACT
80821821 TTC
453 TTC
80821824 TCTTTTTCTT
Statistics
Matches: 413, Mismatches: 40, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
458 1 0.00
459 148 0.36
460 262 0.63
461 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (459 bp):
CATGTAGCTTCTTCAACCCCGTGTCAATACCATAATACTTTCACTAATGTGATTATCTTATTTCT
CAGTTCTTTGATCTCACAAGCTAAAATTCGAACCGATTCTTCAGCATATGACATATCAGATTGAA
TTTCAACCTCGACCGGGGAAATGACATGTGAAGGGTCAGATGGGATCATCGAAGCATCGACACAT
GAAACACATTATGTATTTTCTCTAACTCAGACAGTAAAGATAGTCGACATGCCACTGGCCCAACT
CGCTCAGTAATCTCATACGGTCCGATGAATCGCGAACTCAATTTCCCTTTCTGACCAAACCGCAA
TATCTTATTCCACGGCGACACTTTTAAAAACACTTTATCCCCAATCTAGAACTCAATATCTTTCC
ATTTCAAGGCTGCACACAATTTCTGTCGATCCGAAGCTGCTTTCAAACTATCACGAATTACTTTC
AATA
Found at i:80826645 original size:12 final size:13
Alignment explanation
Indices: 80826614--80826647 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
80826604 ACAAAAATAG
*
80826614 GCCATTTTACCAA
1 GCCATTTTGCCAA
80826627 GCCATTTTGCCAA
1 GCCATTTTGCCAA
80826640 -CCATTTTG
1 GCCATTTTG
80826648 AACATTCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (13 bp):
GCCATTTTGCCAA
Found at i:80827582 original size:123 final size:123
Alignment explanation
Indices: 80827363--80827609 Score: 485
Period size: 123 Copynumber: 2.0 Consensus size: 123
80827353 GCTAGGAGAG
*
80827363 ATGACCAAATGTTAAAGCTTCACCCATGGCTATCTTAAGCTAAATTTTTGGTTGAAGATTAGCAA
1 ATGACCAAATGTTAAAGCTTCACCCATGGCTATCTTAAGCTAAATTTTTGGTTGAAGATGAGCAA
80827428 AGAAAGATAGTGGTTTTGTTTTATTATTTTTATCATTAATTACCAAATTACCTTTTTA
66 AGAAAGATAGTGGTTTTGTTTTATTATTTTTATCATTAATTACCAAATTACCTTTTTA
80827486 ATGACCAAATGTTAAAGCTTCACCCATGGCTATCTTAAGCTAAATTTTTGGTTGAAGATGAGCAA
1 ATGACCAAATGTTAAAGCTTCACCCATGGCTATCTTAAGCTAAATTTTTGGTTGAAGATGAGCAA
80827551 AGAAAGATAGTGGTTTTGTTTTATTATTTTTATCATTAATTACCAAATTACCTTTTTA
66 AGAAAGATAGTGGTTTTGTTTTATTATTTTTATCATTAATTACCAAATTACCTTTTTA
80827609 A
1 A
80827610 CATTTTAAAA
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 123 1.00
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (123 bp):
ATGACCAAATGTTAAAGCTTCACCCATGGCTATCTTAAGCTAAATTTTTGGTTGAAGATGAGCAA
AGAAAGATAGTGGTTTTGTTTTATTATTTTTATCATTAATTACCAAATTACCTTTTTA
Found at i:80828014 original size:58 final size:58
Alignment explanation
Indices: 80827924--80828039 Score: 191
Period size: 58 Copynumber: 2.0 Consensus size: 58
80827914 ACACATAAAC
*
80827924 TTTAAGATAATGCAAATAAGAGCATCCGAGGTACTTACCTTTTGGATGCTTTAGAATA
1 TTTAAGATAATGCAAATAAGAGCATCCGAGGTACTTACCTTTTGGATGCTCTAGAATA
80827982 TTTAAGAT-A-GCATAAGTAAGAGCATCCGAGGTACTTACCTTTTGGATGCTCTAGAATA
1 TTTAAGATAATGCA-AA-TAAGAGCATCCGAGGTACTTACCTTTTGGATGCTCTAGAATA
80828040 CAAAATCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
56 3 0.05
57 3 0.05
58 49 0.89
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (58 bp):
TTTAAGATAATGCAAATAAGAGCATCCGAGGTACTTACCTTTTGGATGCTCTAGAATA
Found at i:80833510 original size:31 final size:26
Alignment explanation
Indices: 80833407--80833516 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
80833397 CATGAAATTC
*
80833407 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
80833433 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
80833459 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
* *
80833485 TTATCATGGAACATTTACTTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
80833511 TTATCA
1 TTATCA
80833517 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:80837011 original size:17 final size:17
Alignment explanation
Indices: 80836979--80837010 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80836969 TTACACTTCT
80836979 ATAATTATCTATTTTTA
1 ATAATTATCTATTTTTA
80836996 ATAATTATC-ATTTTT
1 ATAATTATCTATTTTT
80837011 TCCTCTAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (17 bp):
ATAATTATCTATTTTTA
Found at i:80837451 original size:20 final size:21
Alignment explanation
Indices: 80837426--80837466 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
80837416 CTTATCTTGC
80837426 AATCAAAA-CCCCAAATTAAA
1 AATCAAAAGCCCCAAATTAAA
*
80837446 AATCAAAAGCCCTAAATTAAA
1 AATCAAAAGCCCCAAATTAAA
80837467 CCCTCTATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.59, C:0.22, G:0.02, T:0.17
Consensus pattern (21 bp):
AATCAAAAGCCCCAAATTAAA
Found at i:80838418 original size:21 final size:22
Alignment explanation
Indices: 80838371--80838425 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
80838361 AATTATTTTA
** *
80838371 TTTTTACTTTACCCCTCTAACC
1 TTTTTACTTTTTCCCTCAAACC
*
80838393 CTTTTACTTTTTCCCT-AAACC
1 TTTTTACTTTTTCCCTCAAACC
*
80838414 TTTTTACCTTTT
1 TTTTTACTTTTT
80838426 ACTTTCCCCT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.16, C:0.31, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTTACTTTTTCCCTCAAACC
Found at i:80843292 original size:4 final size:4
Alignment explanation
Indices: 80843283--80843340 Score: 116
Period size: 4 Copynumber: 14.5 Consensus size: 4
80843273 GTGGTAGCAA
80843283 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
80843331 GTAT GTAT GT
1 GTAT GTAT GT
80843341 GATGACTTTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:80844646 original size:49 final size:49
Alignment explanation
Indices: 80844545--80844639 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
80844535 GGGGGCCAGT
** *
80844545 GTTATACTTCAACTCGTGACTGTATAACCATCGTCAACTAGGAGCCCTA
1 GTTATACTTCAACTCGTGACCATATAACCACCGTCAACTAGGAGCCCTA
*
80844594 GTTATACTTCAACTCGTGACCATATAACCACCGTGAACTAGGAGCC
1 GTTATACTTCAACTCGTGACCATATAACCACCGTCAACTAGGAGCC
80844640 TAAGTTACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
GTTATACTTCAACTCGTGACCATATAACCACCGTCAACTAGGAGCCCTA
Found at i:80857282 original size:63 final size:63
Alignment explanation
Indices: 80857212--80857337 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
80857202 TTAAATGTTA
80857212 GAACCTATTTGATATATCCTAATGAGGTGAATTTGGCCAAGTTTTCGTTAGCTTATTATGTGT
1 GAACCTATTTGATATATCCTAATGAGGTGAATTTGGCCAAGTTTTCGTTAGCTTATTATGTGT
*
80857275 GAACCTATTTGATATATCCTAATGAGGTGAATTTGGCCAAGTTTTGGTTAGCTTATTATGTGT
1 GAACCTATTTGATATATCCTAATGAGGTGAATTTGGCCAAGTTTTCGTTAGCTTATTATGTGT
80857338 TTAGGTAAGT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.41
Consensus pattern (63 bp):
GAACCTATTTGATATATCCTAATGAGGTGAATTTGGCCAAGTTTTCGTTAGCTTATTATGTGT
Found at i:80862055 original size:42 final size:42
Alignment explanation
Indices: 80861992--80862074 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
80861982 ATATTTGTAC
80861992 ATCATAATCATAGACCCAAACTCACAAGGTCATCACCATTTT
1 ATCATAATCATAGACCCAAACTCACAAGGTCATCACCATTTT
* * *
80862034 ATCATACTCATAGACCTAAACTCACAAGGTCATTACCATTT
1 ATCATAATCATAGACCCAAACTCACAAGGTCATCACCATTT
80862075 CATTCTCATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.37, C:0.28, G:0.07, T:0.28
Consensus pattern (42 bp):
ATCATAATCATAGACCCAAACTCACAAGGTCATCACCATTTT
Found at i:80874175 original size:28 final size:26
Alignment explanation
Indices: 80874144--80874209 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
80874134 AATTTTCTAG
* *
80874144 AATTTTTTATTTTTATTACCTTTTTAT
1 AATTTTATATTTTTA-TAACTTTTTAT
*
80874171 CAATTTTATATTTTTATAATTTTTTAT
1 -AATTTTATATTTTTATAACTTTTTAT
80874198 AATTTTA-ATTTT
1 AATTTTATATTTT
80874210 AATTTTCTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.14
26 7 0.20
27 9 0.26
28 14 0.40
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (26 bp):
AATTTTATATTTTTATAACTTTTTAT
Done.