Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 243 of 332
Found at i:80874177 original size:10 final size:9
Alignment explanation
Indices: 80874132--80874203 Score: 53
Period size: 10 Copynumber: 7.9 Consensus size: 9
80874122 TAGGTCATAG
80874132 ATAATTTTCT
1 ATAATTTT-T
*
80874142 AGAATTTTT
1 ATAATTTTT
80874151 -T-ATTTTT
1 ATAATTTTT
*
80874158 ATTACCTTTTT
1 A-TA-ATTTTT
80874169 ATCAA-TTTT
1 AT-AATTTTT
80874178 AT-ATTTTT
1 ATAATTTTT
80874186 ATAATTTTTT
1 ATAA-TTTTT
80874196 ATAATTTT
1 ATAATTTT
80874204 AATTTTAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
7 7 0.14
8 6 0.12
9 13 0.26
10 17 0.34
11 7 0.14
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (9 bp):
ATAATTTTT
Found at i:80874179 original size:9 final size:8
Alignment explanation
Indices: 80874165--80874250 Score: 51
Period size: 8 Copynumber: 11.1 Consensus size: 8
80874155 TTTATTACCT
80874165 TTTTATCAA
1 TTTTAT-AA
*
80874174 TTTTATAT
1 TTTTATAA
80874182 TTTTATAA
1 TTTTATAA
80874190 TTTTTTATAA
1 --TTTTATAA
80874200 -TTT-TAA
1 TTTTATAA
*
80874206 TTTTA-AT
1 TTTTATAA
80874213 TTTCTATAA
1 TTT-TATAA
80874222 -TTTAT--
1 TTTTATAA
80874227 TTTTAT-A
1 TTTTATAA
*
80874234 TTTTTTAA
1 TTTTATAA
*
80874242 TTTTCTAA
1 TTTTATAA
80874250 T
1 T
80874251 ATAAATTTGT
Statistics
Matches: 62, Mismatches: 6, Indels: 19
0.71 0.07 0.22
Matches are distributed among these distances:
6 8 0.13
7 18 0.29
8 21 0.34
9 7 0.11
10 8 0.13
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTTATAA
Found at i:80874193 original size:26 final size:28
Alignment explanation
Indices: 80874135--80874209 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 28
80874125 GTCATAGATA
* * *
80874135 ATTTTCTAGAATTTTTTATTTTTATTAC
1 ATTTTTTATAATTTTATATTTTTATTAC
*
80874163 -CTTTTTATCAATTTTATATTTTTA-TA-
1 ATTTTTTAT-AATTTTATATTTTTATTAC
80874189 ATTTTTTATAATTTTA-ATTTT
1 ATTTTTTATAATTTTATATTTT
80874210 AATTTTCTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
25 5 0.12
26 7 0.17
27 14 0.35
28 14 0.35
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (28 bp):
ATTTTTTATAATTTTATATTTTTATTAC
Found at i:80874221 original size:32 final size:32
Alignment explanation
Indices: 80874172--80874248 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
80874162 CCTTTTTATC
*
80874172 AATTTTATATTTT-TATAATTT-TTTATAATTTT
1 AATTTTA-ATTTTCTATAATTTATTT-TAATATT
*
80874204 AATTTTAATTTTCTATAATTTATTTTTATATT
1 AATTTTAATTTTCTATAATTTATTTTAATATT
80874236 --TTTTAATTTTCTA
1 AATTTTAATTTTCTA
80874249 ATATAAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
30 13 0.32
31 5 0.12
32 20 0.49
33 3 0.07
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (32 bp):
AATTTTAATTTTCTATAATTTATTTTAATATT
Found at i:80874222 original size:10 final size:10
Alignment explanation
Indices: 80874181--80874240 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
80874171 CAATTTTATA
80874181 TTTTTATAAT
1 TTTTTATAAT
80874191 TTTTTATAAT
1 TTTTTATAAT
*
80874201 TTTAATTTTAAT
1 TTT--TTATAAT
*
80874213 TTTCTATAAT
1 TTTTTATAAT
*
80874223 TTATTTTTATAT
1 TT-TTTATA-AT
80874235 TTTTTA
1 TTTTTA
80874241 ATTTTCTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
10 20 0.50
11 7 0.17
12 13 0.32
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:80874497 original size:18 final size:19
Alignment explanation
Indices: 80874474--80874513 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
80874464 TTTTATGTTT
*
80874474 TTTTTA-ATTTGTTATTAA
1 TTTTTATATTTGTTATAAA
80874492 TTTTTATATTTGTTATAAA
1 TTTTTATATTTGTTATAAA
80874511 TTT
1 TTT
80874514 ATAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (19 bp):
TTTTTATATTTGTTATAAA
Found at i:80881469 original size:7 final size:7
Alignment explanation
Indices: 80881457--80881518 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
80881447 ACAAACATAC
80881457 AATAAAA
1 AATAAAA
80881464 AATAAAA
1 AATAAAA
80881471 AATAAAA
1 AATAAAA
80881478 AATAAAA
1 AATAAAA
*
80881485 ACTAAAA
1 AATAAAA
*
80881492 ACA-AAAG
1 A-ATAAAA
*
80881499 AA-AAGA
1 AATAAAA
*
80881505 AATAAAG
1 AATAAAA
80881512 AATAAAA
1 AATAAAA
80881519 TTTTTAAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
6 5 0.11
7 40 0.89
ACGTcount: A:0.81, C:0.03, G:0.05, T:0.11
Consensus pattern (7 bp):
AATAAAA
Found at i:80884570 original size:186 final size:187
Alignment explanation
Indices: 80884256--80884626 Score: 690
Period size: 186 Copynumber: 2.0 Consensus size: 187
80884246 GGTGATTTTT
80884256 TTTTATATATTTCGCACTTATAATTAATTATTTTATATGAGTGAAAACATGTTTTAAAAAATAAT
1 TTTTATATATTTCGCACTTATAATTAATTATTTTATATGAGTGAAAACATGTTTTAAAAAATAAT
**
80884321 AGTTGAAAAAGATAAATTAAAACAAATTAATAAATTTTTTTAAAAAATATATTAAAAGAAAATTA
66 AGTTGAAAAAGATAAATTAAAACAAATTAATAAATTTTTAAAAAAAATATATTAAAAGAAAATTA
*
80884386 TGCTATGAATATCTTATGAAGTAGATGTTCATCATAATTAAGATAAA-TTTTAATTA
131 TGCTATGAATATCTTATGAAGTAGATGTTCATCAAAATTAAGATAAAGTTTTAATTA
*
80884442 TTTTATATATTTTGCACTTATAATTAATTATTTTATATGAGTGAAAACATGTTTTAAAAAATAAT
1 TTTTATATATTTCGCACTTATAATTAATTATTTTATATGAGTGAAAACATGTTTTAAAAAATAAT
80884507 AGTTGAAAAAGATAAATTAAAACAAATTAATAAATTTTTAAAAAAAATATATTAAAAGAAAATTA
66 AGTTGAAAAAGATAAATTAAAACAAATTAATAAATTTTTAAAAAAAATATATTAAAAGAAAATTA
*
80884572 TGCTATGAATATCTTATTAAGTAGATGTTCATCAAAATTAAGATAAAGTTTTAAT
131 TGCTATGAATATCTTATGAAGTAGATGTTCATCAAAATTAAGATAAAGTTTTAAT
80884627 GTACTTTAAA
Statistics
Matches: 179, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
186 172 0.96
187 7 0.04
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.39
Consensus pattern (187 bp):
TTTTATATATTTCGCACTTATAATTAATTATTTTATATGAGTGAAAACATGTTTTAAAAAATAAT
AGTTGAAAAAGATAAATTAAAACAAATTAATAAATTTTTAAAAAAAATATATTAAAAGAAAATTA
TGCTATGAATATCTTATGAAGTAGATGTTCATCAAAATTAAGATAAAGTTTTAATTA
Found at i:80886304 original size:32 final size:32
Alignment explanation
Indices: 80886268--80886328 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
80886258 TATACAAGTA
*
80886268 ATTTAACA-TATATTTCAATAAATAATTATAAT
1 ATTTAACATTATAATTCAA-AAATAATTATAAT
* *
80886300 ATTTAATATTATAATTCTAAAATAATTAT
1 ATTTAACATTATAATTCAAAAATAATTAT
80886329 TTTTTATTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 17 0.68
33 8 0.32
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATTTAACATTATAATTCAAAAATAATTATAAT
Found at i:80888100 original size:30 final size:30
Alignment explanation
Indices: 80888066--80888122 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
80888056 TAACAAGCAG
*
80888066 ATGTCTCTAGAATAATAAAAAAATTAACAA
1 ATGTCTCTAAAATAATAAAAAAATTAACAA
* *
80888096 ATGTCTTTAAAATAATAACAAAATTAA
1 ATGTCTCTAAAATAATAAAAAAATTAA
80888123 TAATAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (30 bp):
ATGTCTCTAAAATAATAAAAAAATTAACAA
Found at i:80889211 original size:20 final size:19
Alignment explanation
Indices: 80889169--80889211 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
80889159 TGAATAATTT
* *
80889169 TAAATTCATATATATCTTT
1 TAAATTCATATATATATTA
*
80889188 TAAATTTATATAATATATTA
1 TAAATTCATAT-ATATATTA
80889208 TAAA
1 TAAA
80889212 AAAACTTGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
TAAATTCATATATATATTA
Found at i:80890284 original size:17 final size:18
Alignment explanation
Indices: 80890254--80890289 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
80890244 ATTTTTTAAT
80890254 TTAAAAATTCAAAAATTA
1 TTAAAAATTCAAAAATTA
*
80890272 TTAAAAATT-AAAATTTA
1 TTAAAAATTCAAAAATTA
80890289 T
1 T
80890290 AGAAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAAAATTCAAAAATTA
Found at i:80906044 original size:17 final size:17
Alignment explanation
Indices: 80905998--80906047 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
80905988 ATTTAAAAAA
*
80905998 ACAAAATTTATAAACATT
1 ACAAAATTTAT-AATATT
** *
80906016 TTAAAATATATAATATT
1 ACAAAATTTATAATATT
80906033 ACAAAATTTATAATA
1 ACAAAATTTATAATA
80906048 AGATTTTTCA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
ACAAAATTTATAATATT
Found at i:80913463 original size:6 final size:6
Alignment explanation
Indices: 80913452--80913476 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
80913442 TATTTTCTCC
80913452 AAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG A
80913477 TTTTTGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:80926341 original size:22 final size:24
Alignment explanation
Indices: 80926304--80926347 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
80926294 AATAATGATT
*
80926304 TAAAAATTAAAAATACTTTTAAAA
1 TAAAAATTAAAAATACTATTAAAA
80926328 TAAAAA-T-AAAATACTATTAA
1 TAAAAATTAAAAATACTATTAA
80926348 TTTTTAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 1 0.05
24 6 0.32
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (24 bp):
TAAAAATTAAAAATACTATTAAAA
Found at i:80926844 original size:50 final size:50
Alignment explanation
Indices: 80926783--80926885 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
80926773 TATAAAAAGA
*
80926783 TATAAAGAATATTTAATATTATTTTAATTTATATGTGCAACTAACCCTTG
1 TATAAAAAATATTTAATATTATTTTAATTTATATGTGCAACTAACCCTTG
80926833 TATAAAAAATATTTAATATTATTTTAATTTATATGTGCAACTAACCCTTG
1 TATAAAAAATATTTAATATTATTTTAATTTATATGTGCAACTAACCCTTG
80926883 TAT
1 TAT
80926886 CTCACAAGTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.45
Consensus pattern (50 bp):
TATAAAAAATATTTAATATTATTTTAATTTATATGTGCAACTAACCCTTG
Found at i:80928449 original size:3 final size:3
Alignment explanation
Indices: 80928433--80928471 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
80928423 ATCTTTGTGA
* *
80928433 ATT ATT ACT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80928472 TTGTATAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:80930178 original size:37 final size:37
Alignment explanation
Indices: 80930107--80930209 Score: 104
Period size: 37 Copynumber: 2.8 Consensus size: 37
80930097 TAAAAATTCC
* *
80930107 AATAAATAGAAAATTATTA-AATTTATTTTTAAAATCTTGT
1 AATAAATA-AAAA-TATTATAATTT-TTTTAAAAAT-TTGG
80930147 AA-AAATAAAAATATTATAATTTTTTTAAAAATTTGG
1 AATAAATAAAAATATTATAATTTTTTTAAAAATTTGG
* * *
80930183 AATATATTAAAA-AGTATAATTTTTTTA
1 AATAAATAAAAATATTATAATTTTTTTA
80930210 TTATTTTCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
36 19 0.34
37 21 0.38
38 9 0.16
39 5 0.09
40 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.05, T:0.45
Consensus pattern (37 bp):
AATAAATAAAAATATTATAATTTTTTTAAAAATTTGG
Found at i:80934814 original size:21 final size:21
Alignment explanation
Indices: 80934772--80934814 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
80934762 ATTTTGATGA
* **
80934772 AGGTATCAATACCTTGGGTTT
1 AGGTAACAATACCTTGCCTTT
*
80934793 AGGTAACAGTACCTTGCCTTT
1 AGGTAACAATACCTTGCCTTT
80934814 A
1 A
80934815 AAATTAATAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35
Consensus pattern (21 bp):
AGGTAACAATACCTTGCCTTT
Found at i:80937059 original size:23 final size:22
Alignment explanation
Indices: 80937010--80937066 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
80937000 AACTGATACA
*
80937010 TATATATTATCTTTTAAATTTT
1 TATATATTATTTTTTAAATTTT
*
80937032 TATATATTATTTTTTAATTGTTT
1 TATATATTATTTTTTAAAT-TTT
*
80937055 TATATGTTATTT
1 TATATATTATTT
80937067 ATTTTATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 17 0.55
23 14 0.45
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (22 bp):
TATATATTATTTTTTAAATTTT
Found at i:80937155 original size:22 final size:22
Alignment explanation
Indices: 80937092--80937155 Score: 62
Period size: 24 Copynumber: 2.9 Consensus size: 22
80937082 TTTTAAACTA
**
80937092 TTTTA-TTATTTATTTT-AAGT
1 TTTTATTTATTTATTTTGAAAC
80937112 TTTTATATATCATTT-TTTTGAAAC
1 TTTTAT-T-T-ATTTATTTTGAAAC
80937136 TTTTATTTATTTATTTTGAA
1 TTTTATTTATTTATTTTGAA
80937156 TTGTTTTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 9 0.25
23 6 0.17
24 12 0.33
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.66
Consensus pattern (22 bp):
TTTTATTTATTTATTTTGAAAC
Found at i:80939147 original size:19 final size:19
Alignment explanation
Indices: 80939123--80939166 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
80939113 CACATCTTTT
*
80939123 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
*
80939142 TGCATTGTATTTCATCATA
1 TGCATTGCATTTCATCATA
80939161 TGCATT
1 TGCATT
80939167 AAATTTCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.45
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:80939172 original size:19 final size:20
Alignment explanation
Indices: 80939130--80939174 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
80939120 TTTTGCATTC
* **
80939130 ATTTCATGCATCTGCATTGT
1 ATTTCATGCATATGCATTAA
80939150 ATTTCAT-CATATGCATTAA
1 ATTTCATGCATATGCATTAA
80939169 ATTTCA
1 ATTTCA
80939175 CAAAATGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (20 bp):
ATTTCATGCATATGCATTAA
Found at i:80945284 original size:55 final size:55
Alignment explanation
Indices: 80945223--80945326 Score: 145
Period size: 55 Copynumber: 1.9 Consensus size: 55
80945213 CAAGCCTCAC
* * *
80945223 GCCCGTGTTAATTTAACAGGTTCGACCACGGGTGTTCCACACGGGCGTGTCAAAA
1 GCCCGTGCTAATTTAACAGGTTCGACCACAGGTCTTCCACACGGGCGTGTCAAAA
* * * *
80945278 GCCCGTGCTATTTTAACAGGTTTGCCCACAGTTCTTCCACACGGGCGTG
1 GCCCGTGCTAATTTAACAGGTTCGACCACAGGTCTTCCACACGGGCGTG
80945327 CGTTGTTTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.20, C:0.28, G:0.26, T:0.26
Consensus pattern (55 bp):
GCCCGTGCTAATTTAACAGGTTCGACCACAGGTCTTCCACACGGGCGTGTCAAAA
Found at i:80952234 original size:42 final size:42
Alignment explanation
Indices: 80952175--80952254 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
80952165 CAAATTACAA
*
80952175 ATCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGGAGTTAG
1 ATCTTATCTCCCTAAAGTTACAGTGGAGTAGATCGGAGTTAG
* **
80952217 ATCTTATCTCCTTAAAGTTGTAGTGGAGTAGATCGGAG
1 ATCTTATCTCCCTAAAGTTACAGTGGAGTAGATCGGAG
80952255 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (42 bp):
ATCTTATCTCCCTAAAGTTACAGTGGAGTAGATCGGAGTTAG
Found at i:80952415 original size:49 final size:45
Alignment explanation
Indices: 80952034--80952568 Score: 291
Period size: 44 Copynumber: 11.7 Consensus size: 45
80952024 TATGGCGAAC
* ** *
80952034 CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTT-GAAGTTACAACAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGTTAC-A-AA-T
* * * ** *
80952081 CTTATCTCCCTGAAGTTGCAGTGGAGAAGACT-GAAAACTGCAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAG-AAGTTACAAAT
* * * * *
80952126 CTTATTTCCTTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTACAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATT--AG----AAGTTACAAAT
* * * *
80952177 CTTATCTCCCTAAAGTTACAGTGGAGTAGATT-GGAGTT--AGAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGTTACAAAT
* * ** * * * *
80952219 CTTATCTCCTTAAAGTTGTAGTGGAGTAGA-TCGGAGATAGCAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGTTA-CAAAT
* * * * * * *
80952264 CTTATCTCTCTGTAGTTACAGTAGAGCAGATTA-AAGCTATATAC
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGTTACAAAT
** * * * * *
80952308 CTTATCTCCCTGAAGTCGCAGTGGAGTAGTTTAAAAATAAACAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGT-TACAAAT
*
80952354 TTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAGGTTACAAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATT--AGA-A-GTTACAAAT
** * ** * *
80952403 CTTATCTCCCTGAAGTTGTAATGGAGCAGATTA-AAGCCACGAAC
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGTTACAAAT
* * * *
80952447 CTTTTCTCCCTGAAGTTACAGTAGAGCAGGTT-GAAGTTACAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGTTACAAAT
* * * *
80952491 CTTATCTCCTTGAAGTTGA-AGTGAAGCAGATT-GAAGATAACGAAT
1 CTTATCTCCCTGAAGTT-ACAGTGGAGCAGATTAGAAG-TTACAAAT
* * *
80952536 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTA
80952569 AAGCTAAGAG
Statistics
Matches: 368, Mismatches: 97, Indels: 47
0.72 0.19 0.09
Matches are distributed among these distances:
41 1 0.00
42 35 0.10
44 97 0.26
45 92 0.25
46 34 0.09
47 30 0.08
48 8 0.02
49 35 0.10
50 1 0.00
51 35 0.10
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAGAAGTTACAAAT
Found at i:80952434 original size:139 final size:133
Alignment explanation
Indices: 80952029--80952574 Score: 337
Period size: 138 Copynumber: 4.0 Consensus size: 133
80952019 TCTAATATGG
* *** * * * *
80952029 CGAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTTACAACAAGTCTTATCTCCCTGA
1 CGAACCTTATCTCCCTGAAGTCACAGTAGAGCAGGTT-AA--AATAACAAATCTTATCTCCCTGA
* * * * * * * * *
80952094 AGTTGCAGTGGAGAAGACTGAAAACT-GCAAATCTTATTTCCTTGAAGTTGCAGTGGAACAGATT
63 AGTTGAAGTGAAGCAGATTGAAGA-TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
80952158 AAAGCTA
127 AAAGCTA
* * * * * * ** * * *
80952165 CAAATTACAAATCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGGAGT--TAGATCTTATCTCC
1 C-GA--AC----CTTATCTCCCTGAAGTCACAGTAGAGCAGGTTAAAATAACAAATCTTATCTCC
* * * * * * * * * * * *
80952228 TTAAAGTTGTAGTGGAGTAGATCGGAGATAGCAAATCTTATCTCTCTGTAGTTACAGTAGAGCAG
59 CTGAAGTTGAAGTGAAGCAGATTGAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
80952293 ATTAAAGCTA
124 ATTAAAGCTA
* * * * * *
80952303 -TATACCTTATCTCCCTGAAGTCGCAGTGGAGTAGTTTAAAAATAAACAAATTTTATCTCCCTGA
1 CGA-ACCTTATCTCCCTGAAGTCACAGTAGAGCAGGTT-AAAAT-AACAAATCTTATCTCCCTGA
* * * *
80952367 AGTT-ACAGTGGAGCAGATTGAAGACAGGTTACAAATCTTATCTCCCTGAAGTTGTAATGGAGCA
63 AGTTGA-AGTGAAGCAGATTGAAG--A--TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
*
80952431 GATTAAAGCCA
123 GATTAAAGCTA
* * * * * * *
80952442 CGAACCTTTTCTCCCTGAAGTTACAGTAGAGCAGGTTGAAGTTACAAGTCTTATCTCCTTGAAGT
1 CGAACCTTATCTCCCTGAAGTCACAGTAGAGCAGGTTAAAATAACAAATCTTATCTCCCTGAAGT
* * *
80952507 TGAAGTGAAGCAGATTGAAGATAACGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAG
66 TGAAGTGAAGCAGATTGAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
80952572 CTA
131 CTA
80952575 AGAGTTACAA
Statistics
Matches: 316, Mismatches: 75, Indels: 41
0.73 0.17 0.09
Matches are distributed among these distances:
131 28 0.09
132 2 0.01
133 40 0.13
135 35 0.11
136 2 0.01
137 39 0.12
138 73 0.23
139 68 0.22
140 1 0.00
143 28 0.09
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (133 bp):
CGAACCTTATCTCCCTGAAGTCACAGTAGAGCAGGTTAAAATAACAAATCTTATCTCCCTGAAGT
TGAAGTGAAGCAGATTGAAGATAACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG
CTA
Found at i:80952481 original size:93 final size:90
Alignment explanation
Indices: 80952034--80952567 Score: 246
Period size: 93 Copynumber: 5.9 Consensus size: 90
80952024 TATGGCGAAC
* * * * * *
80952034 CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTTACAAC-AAGTCTTA-TCTCCCTGAAGT
1 CTTATCTCCCTGAAGTTGAAGTGAAGCAGATTAAAG--ACAACGAA-CCTTATTCTCCCTGAAGT
* * * * ** *
80952097 TGCAGTGGAGAAGACTGAAAACTGCAAAT
63 TACAGTAGAGCAGATTG-AAGTTACAAAT
* * * * * *
80952126 CTTATTTCCTTGAAGTTGCAGTGGAA-CAGATTAAAGCTACAAATTACAAATCTTA-TCTCCCTA
1 CTTATCTCCCTGAAGTTGAAGT-GAAGCAGATTAAAG--AC--A--ACGAACCTTATTCTCCCTG
* * * *
80952189 AAGTTACAGTGGAGTAGATTGGAGTT--AGAT
59 AAGTTACAGTAGAGCAGATTGAAGTTACAAAT
* * * * * *** * * * * * *
80952219 CTTATCTCCTTAAAGTTGTAGTGGAGTAGATCGGAGATAGCAAATCTTA-TCTCTCTGTAGTTAC
1 CTTATCTCCCTGAAGTTGAAGTGAAGCAGATTAAAGACAACGAACCTTATTCTCCCTGAAGTTAC
* * * * *
80952283 AGTAGAGCAGATTAAAGCTATATAC
66 AGTAGAGCAGATTGAAGTTACAAAT
* * * * * * * * **
80952308 CTTATCTCCCTGAAGTCGCAGTGGAGTAGTTTAAAAATAAACAAATTTTA-TCTCCCTGAAGTTA
1 CTTATCTCCCTGAAGTTGAAGTGAAGCAGATTAAAGA-CAACGAACCTTATTCTCCCTGAAGTTA
*
80952372 CAGTGGAGCAGATTGAAGACAGGTTACAAAT
65 CAGTAGAGCAGATT---GA-A-GTTACAAAT
* *
80952403 CTTATCTCCCTGAAGTTGTAA-TGGAGCAGATTAAAG-CCACGAACCTT-TTCTCCCTGAAGTTA
1 CTTATCTCCCTGAAGTTG-AAGTGAAGCAGATTAAAGACAACGAACCTTATTCTCCCTGAAGTTA
* *
80952465 CAGTAGAGCAGGTTGAAGTTACAAGT
65 CAGTAGAGCAGATTGAAGTTACAAAT
* * * * *
80952491 CTTATCTCCTTGAAGTTGAAGTGAAGCAGATTGAAGATAACGAATCTTATT-TCCCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGAAGTGAAGCAGATTAAAGACAACGAACCTTATTCTCCCTGAAGTTAC
* *
80952555 AGTGGAACAGATT
66 AGTAGAGCAGATT
80952568 AAAGCTAAGA
Statistics
Matches: 343, Mismatches: 79, Indels: 43
0.74 0.17 0.09
Matches are distributed among these distances:
87 37 0.11
88 38 0.11
89 62 0.18
90 38 0.11
91 1 0.00
92 31 0.09
93 63 0.18
94 2 0.01
95 36 0.10
96 33 0.10
97 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (90 bp):
CTTATCTCCCTGAAGTTGAAGTGAAGCAGATTAAAGACAACGAACCTTATTCTCCCTGAAGTTAC
AGTAGAGCAGATTGAAGTTACAAAT
Found at i:80954232 original size:176 final size:176
Alignment explanation
Indices: 80953938--80954290 Score: 643
Period size: 176 Copynumber: 2.0 Consensus size: 176
80953928 TAAAACGACA
*
80953938 TCGTTTTAGCCTCTGACCCTGACCCAACCTGCTCCAATGGGGGGATCCACTTGTTTCATTCTTTT
1 TCGTTTTAGCCTCTGAACCTGACCCAACCTGCTCCAATGGGGGGATCCACTTGTTTCATTCTTTT
80954003 GGATTTATTTCGCGCGTGGTCCTTTCGCTTTAGCAGTGCGCTACAATCTGGCCCTTGTTGTTTCT
66 GGATTTATTTCGCGCGTGGTCCTTTCGCTTTAGCAGTGCGCTACAATCTGGCCCTTGTTGTTTCT
80954068 TTTATTTTTTCCTTAAATCTCCGCATAATTTAGGTTTTGTTTCACT
131 TTTATTTTTTCCTTAAATCTCCGCATAATTTAGGTTTTGTTTCACT
** *
80954114 TCGTTTTAGTTTCTGAATCTGACCCAACCTGCTCCAATGGGGGGATCCACTTGTTTCATTCTTTT
1 TCGTTTTAGCCTCTGAACCTGACCCAACCTGCTCCAATGGGGGGATCCACTTGTTTCATTCTTTT
* *
80954179 GGATTTATTTCGCGCGTGGTCCTTTCGCTTTAGCGGTGCGCTGCAATCTGGCCCTTGTTGTTTCT
66 GGATTTATTTCGCGCGTGGTCCTTTCGCTTTAGCAGTGCGCTACAATCTGGCCCTTGTTGTTTCT
*
80954244 TTTATTTTTTCCTTAAATCTCCGCATAATTTAGTTTTTGTTTCACT
131 TTTATTTTTTCCTTAAATCTCCGCATAATTTAGGTTTTGTTTCACT
80954290 T
1 T
80954291 TACTCCATTG
Statistics
Matches: 170, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
176 170 1.00
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.43
Consensus pattern (176 bp):
TCGTTTTAGCCTCTGAACCTGACCCAACCTGCTCCAATGGGGGGATCCACTTGTTTCATTCTTTT
GGATTTATTTCGCGCGTGGTCCTTTCGCTTTAGCAGTGCGCTACAATCTGGCCCTTGTTGTTTCT
TTTATTTTTTCCTTAAATCTCCGCATAATTTAGGTTTTGTTTCACT
Found at i:80954871 original size:20 final size:20
Alignment explanation
Indices: 80954846--80954886 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80954836 TCTTTTATTC
80954846 TTATTTATTTTAAGTTTCTT
1 TTATTTATTTTAAGTTTCTT
80954866 TTATTTATTTTAAGTTTCTT
1 TTATTTATTTTAAGTTTCTT
80954886 T
1 T
80954887 CATATATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.71
Consensus pattern (20 bp):
TTATTTATTTTAAGTTTCTT
Found at i:80954894 original size:20 final size:20
Alignment explanation
Indices: 80954851--80954894 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
80954841 TATTCTTATT
* *
80954851 TATTTTAAGTTTCTTTTATT
1 TATTTTAAGTTTCTTTCATA
80954871 TATTTTAAGTTTCTTTCATA
1 TATTTTAAGTTTCTTTCATA
80954891 TATT
1 TATT
80954895 ATTTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.66
Consensus pattern (20 bp):
TATTTTAAGTTTCTTTCATA
Found at i:80954977 original size:39 final size:39
Alignment explanation
Indices: 80954939--80955015 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
80954929 TAAATTTTTA
* *
80954939 TATATTATT--TTTT-AATTGTTTTATATGTTATTTCTTT
1 TATATTATTCATTTTAAATTGTTTTAT-TATTATTTATTT
*
80954976 TATATTGTTCATTTTAAATTGTTTTATTATTATTTATTT
1 TATATTATTCATTTTAAATTGTTTTATTATTATTTATTT
80955015 T
1 T
80955016 GAGTTTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 8 0.24
39 15 0.44
40 11 0.32
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (39 bp):
TATATTATTCATTTTAAATTGTTTTATTATTATTTATTT
Found at i:80954984 original size:26 final size:23
Alignment explanation
Indices: 80954915--80954971 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
80954905 AACTGATACA
* *
80954915 TATATATTATCTTTTAAAT-TTT
1 TATATATTATTTTTTAATTGTTT
80954937 TATATATTATTTTTTAATTGTTT
1 TATATATTATTTTTTAATTGTTT
*
80954960 TATATGTTATTT
1 TATATATTATTT
80954972 CTTTTATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 17 0.55
23 14 0.45
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (23 bp):
TATATATTATTTTTTAATTGTTT
Found at i:80956581 original size:26 final size:26
Alignment explanation
Indices: 80956552--80956658 Score: 178
Period size: 26 Copynumber: 4.1 Consensus size: 26
80956542 TGGTACAAAT
80956552 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80956578 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80956604 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80956630 TGATAATGGTTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80956656 TGA
1 TGA
80956659 CGGGCATTTC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80958298 original size:27 final size:27
Alignment explanation
Indices: 80958258--80958317 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
80958248 AGGAAGTGTC
80958258 CTGGTGGCTATGCCAAAATTATCTG-AT
1 CTGGTGGCTATGCCAAAA-TATCTGTAT
* *
80958285 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCAAAATATCTGTAT
80958312 CTGGTG
1 CTGGTG
80958318 ACTTCGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.20
27 24 0.80
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTATGCCAAAATATCTGTAT
Found at i:80958328 original size:27 final size:26
Alignment explanation
Indices: 80958258--80958335 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
80958248 AGGAAGTGTC
* * *
80958258 CTGGTGGCTATGCCAAAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGAT
*
80958285 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTG-AT
*
80958312 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
80958336 GCAGCCTCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.16
27 38 0.84
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGAT
Found at i:80964680 original size:26 final size:26
Alignment explanation
Indices: 80964651--80964810 Score: 275
Period size: 26 Copynumber: 6.2 Consensus size: 26
80964641 TGGTAAAAAT
80964651 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80964677 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80964703 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80964729 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80964755 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80964781 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80964807 TGAT
1 TGAT
80964811 GGGCATTTCA
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 125 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80966003 original size:8 final size:8
Alignment explanation
Indices: 80965990--80966019 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
80965980 AGATCGGCAT
80965990 AAGCCGAA
1 AAGCCGAA
80965998 AAGCCGAA
1 AAGCCGAA
*
80966006 ATGCCGAA
1 AAGCCGAA
80966014 AAGCCG
1 AAGCCG
80966020 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:80966449 original size:27 final size:27
Alignment explanation
Indices: 80966409--80966549 Score: 155
Period size: 27 Copynumber: 5.2 Consensus size: 27
80966399 AGGAAGCGTC
80966409 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
80966436 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
80966462 CCTGGTGGCTATGCCTCAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* * *
80966490 CTGGTGGCTTTACCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
80966517 CCGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
80966544 CTGGTG
1 CTGGTG
80966550 ACTTCTTCAC
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
26 11 0.12
27 80 0.84
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:80966488 original size:54 final size:54
Alignment explanation
Indices: 80966406--80966549 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
80966396 TGGAGGAAGC
*
80966406 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* *
80966460 GTCCTGGTGGCTATGCCTCAATTATCTGATCTGGTGGCTTTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
80966514 GTTCC-GGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 G-TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
80966550 ACTTCTTCAC
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
53 6 0.07
54 74 0.89
55 3 0.04
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:80968448 original size:19 final size:19
Alignment explanation
Indices: 80968420--80968456 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80968410 ATGACTACTT
80968420 TTCATATTTTCCTCCACTC
1 TTCATATTTTCCTCCACTC
* *
80968439 TTCATCTTTTTCTCCACT
1 TTCATATTTTCCTCCACT
80968457 TTTCTACACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.14, C:0.35, G:0.00, T:0.51
Consensus pattern (19 bp):
TTCATATTTTCCTCCACTC
Found at i:80973722 original size:17 final size:16
Alignment explanation
Indices: 80973700--80973733 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80973690 AAATACGTCC
80973700 TCTCTTTGCTCTCTTAT
1 TCTCTTTG-TCTCTTAT
*
80973717 TCTCTTTGTCTTTTAT
1 TCTCTTTGTCTCTTAT
80973733 T
1 T
80973734 TTATAAAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.06, C:0.24, G:0.06, T:0.65
Consensus pattern (16 bp):
TCTCTTTGTCTCTTAT
Found at i:80978423 original size:27 final size:26
Alignment explanation
Indices: 80978351--80978422 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
80978341 TATAAAAATT
* *
80978351 ATTATA-TATTATATCTTTTAGTATTC
1 ATTATATTATTAT-TATTTTACTATTC
*
80978377 ATTATATTATTTTTATTTTACTATATC
1 ATTATATTATTATTATTTTACTAT-TC
*
80978404 ATTTTATTATTAATTATTT
1 ATTATATTATT-ATTATTT
80978423 ATTATGTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
26 15 0.39
27 17 0.45
28 6 0.16
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (26 bp):
ATTATATTATTATTATTTTACTATTC
Found at i:80983880 original size:43 final size:43
Alignment explanation
Indices: 80983832--80983986 Score: 274
Period size: 43 Copynumber: 3.6 Consensus size: 43
80983822 CCGACATTAC
*
80983832 GCCTGCTAGGTACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
80983875 GCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80983918 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
80983961 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
80983987 TAATACCAGC
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:80984043 original size:37 final size:38
Alignment explanation
Indices: 80983979--80984061 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 38
80983969 GGCACGAAGG
* * *
80983979 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAT
* *
80984017 CCCGGATA-AATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAT
*
80984054 CCTGAATA
1 CCCGAATA
80984062 CACATCAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 31 0.82
38 7 0.18
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCAGGATTTAT
Found at i:80985735 original size:24 final size:24
Alignment explanation
Indices: 80985703--80985750 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
80985693 TAATTACATA
80985703 ATTTATTCAGCTTCTAACTCATCT
1 ATTTATTCAGCTTCTAACTCATCT
80985727 ATTTATTCAGCTTCTAACTCATCT
1 ATTTATTCAGCTTCTAACTCATCT
80985751 CCCACAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.04, T:0.46
Consensus pattern (24 bp):
ATTTATTCAGCTTCTAACTCATCT
Found at i:80989959 original size:18 final size:19
Alignment explanation
Indices: 80989931--80989971 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
80989921 GTACCTAAAC
* *
80989931 AGTAATCAGTAACGGTAGT
1 AGTAATCAGTAACAGTAAT
80989950 AGTAAT-AGTAACAGTAAT
1 AGTAATCAGTAACAGTAAT
80989968 AGTA
1 AGTA
80989972 TTCAACACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (19 bp):
AGTAATCAGTAACAGTAAT
Found at i:80990020 original size:45 final size:45
Alignment explanation
Indices: 80989951--80990061 Score: 150
Period size: 45 Copynumber: 2.5 Consensus size: 45
80989941 AACGGTAGTA
* * * * * * *
80989951 GTAATAGTAACAGTAATAGTATTCAACACATAAAGTGTTGAATCT
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTATCGAATCG
*
80989996 GTAACAGTAATGGTAACAGTATTCAACACACAAAGTATCGAATCG
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTATCGAATCG
80990041 GTAACAGTAACGGTAACAGTA
1 GTAACAGTAACGGTAACAGTA
80990062 ACAGTAGTCG
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGTATTCAACACACAAAGTATCGAATCG
Found at i:80990056 original size:12 final size:12
Alignment explanation
Indices: 80990039--80990063 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80990029 AGTATCGAAT
80990039 CGGTAACAGTAA
1 CGGTAACAGTAA
80990051 CGGTAACAGTAA
1 CGGTAACAGTAA
80990063 C
1 C
80990064 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:80990332 original size:21 final size:21
Alignment explanation
Indices: 80990267--80990334 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
80990257 AATTCATTAC
* *
80990267 TTCAGTAATTTCACAGTTCAA
1 TTCAGTAACTTCACAATTCAA
* * *
80990288 TGCAGTACACATAACAA-T--A
1 TTCAGTA-ACTTCACAATTCAA
80990307 TTCAGTAACTTCACAATTCAA
1 TTCAGTAACTTCACAATTCAA
80990328 TTCAGTA
1 TTCAGTA
80990335 TTCCAAACAA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
21 15 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (21 bp):
TTCAGTAACTTCACAATTCAA
Found at i:80990344 original size:40 final size:40
Alignment explanation
Indices: 80990267--80990376 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
80990257 AATTCATTAC
* *
80990267 TTCAGTAATTTCACAGTTCAATGCAGTA-CACATAACAATA
1 TTCAGTAA-TTCACAATTCAATTCAGTATCACATAACAATA
80990307 TTCAGTAACTTCACAATTCAATTCAGTATTC-CA-AACAATA
1 TTCAGTAA-TTCACAATTCAATTCAGTA-TCACATAACAATA
* * *
80990347 TTTAGT-ATTCCATAATTCAGTTCAGTATCA
1 TTCAGTAATT-CACAATTCAATTCAGTATCA
80990377 GTCTCAATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
38 4 0.07
39 16 0.27
40 37 0.62
41 2 0.03
42 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (40 bp):
TTCAGTAATTCACAATTCAATTCAGTATCACATAACAATA
Found at i:80991456 original size:16 final size:15
Alignment explanation
Indices: 80991418--80991460 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
80991408 ATTTAAAAAT
* *
80991418 ATAAATTATAATTTG
1 ATAAATAATAATATG
80991433 ATAGAATAATAATAATG
1 ATA-AATAATAAT-ATG
80991450 ATAAATAATAA
1 ATAAATAATAA
80991461 ATATCTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 16 0.67
17 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (15 bp):
ATAAATAATAATATG
Found at i:80991602 original size:25 final size:27
Alignment explanation
Indices: 80991568--80991629 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 27
80991558 TGGCTTTAAT
*
80991568 TTAATTTAATTCATAATATGATATTTATAA
1 TTAA-TTAATTAATAATAT-AT-TTTATAA
80991598 TTAATTAATTTAATAATATATTTTATAA
1 TTAATTAA-TTAATAATATATTTTATAA
80991626 TTAA
1 TTAA
80991630 ATTATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 11 0.37
29 6 0.20
30 13 0.43
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
TTAATTAATTAATAATATATTTTATAA
Found at i:80991640 original size:24 final size:23
Alignment explanation
Indices: 80991599--80991653 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
80991589 TATTTATAAT
* **
80991599 TAATTAATTTAATAATATATTTTA
1 TAATTAAATTAATAATAT-TTACA
80991623 TAATTAAATT-ATATATATTTACA
1 TAATTAAATTAATA-ATATTTACA
80991646 TAATTAAA
1 TAATTAAA
80991654 ATCTAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.52
24 13 0.48
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
TAATTAAATTAATAATATTTACA
Found at i:80994352 original size:24 final size:21
Alignment explanation
Indices: 80994301--80994342 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80994291 TGTATGAGTT
80994301 TATATGATCATTTATTATGTC
1 TATATGATCATTTATTATGTC
80994322 TATATGATCATTTATTATGTC
1 TATATGATCATTTATTATGTC
80994343 AAGTGTATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (21 bp):
TATATGATCATTTATTATGTC
Found at i:80996462 original size:24 final size:24
Alignment explanation
Indices: 80996430--80996477 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
80996420 TAATTACATA
80996430 ATTTATTCAGCTTCTAACTCATCT
1 ATTTATTCAGCTTCTAACTCATCT
80996454 ATTTATTCAGCTTCTAACTCATCT
1 ATTTATTCAGCTTCTAACTCATCT
80996478 CCCACAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.04, T:0.46
Consensus pattern (24 bp):
ATTTATTCAGCTTCTAACTCATCT
Found at i:81000686 original size:18 final size:19
Alignment explanation
Indices: 81000658--81000698 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
81000648 GTACCTAAAC
* *
81000658 AGTAATCAGTAACGGTAGT
1 AGTAATCAGTAACAGTAAT
81000677 AGTAAT-AGTAACAGTAAT
1 AGTAATCAGTAACAGTAAT
81000695 AGTA
1 AGTA
81000699 TTCAACACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (19 bp):
AGTAATCAGTAACAGTAAT
Found at i:81000747 original size:45 final size:45
Alignment explanation
Indices: 81000678--81000788 Score: 150
Period size: 45 Copynumber: 2.5 Consensus size: 45
81000668 AACGGTAGTA
* * * * * * *
81000678 GTAATAGTAACAGTAATAGTATTCAACACATAAAGTGTTGAATCT
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTATCGAATCG
*
81000723 GTAACAGTAATGGTAACAGTATTCAACACACAAAGTATCGAATCG
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTATCGAATCG
81000768 GTAACAGTAACGGTAACAGTA
1 GTAACAGTAACGGTAACAGTA
81000789 ACAGTAGTCG
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGTATTCAACACACAAAGTATCGAATCG
Found at i:81000783 original size:12 final size:12
Alignment explanation
Indices: 81000766--81000790 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81000756 AGTATCGAAT
81000766 CGGTAACAGTAA
1 CGGTAACAGTAA
81000778 CGGTAACAGTAA
1 CGGTAACAGTAA
81000790 C
1 C
81000791 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:81001059 original size:21 final size:21
Alignment explanation
Indices: 81000994--81001061 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
81000984 AATTCATTAC
* *
81000994 TTCAGTAATTTCACAGTTCAA
1 TTCAGTAACTTCACAATTCAA
* * *
81001015 TGCAGTACACATAACAA-T--A
1 TTCAGTA-ACTTCACAATTCAA
81001034 TTCAGTAACTTCACAATTCAA
1 TTCAGTAACTTCACAATTCAA
81001055 TTCAGTA
1 TTCAGTA
81001062 TTCCAAACAA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
21 15 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (21 bp):
TTCAGTAACTTCACAATTCAA
Found at i:81001071 original size:40 final size:40
Alignment explanation
Indices: 81000994--81001103 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
81000984 AATTCATTAC
* *
81000994 TTCAGTAATTTCACAGTTCAATGCAGTA-CACATAACAATA
1 TTCAGTAA-TTCACAATTCAATTCAGTATCACATAACAATA
81001034 TTCAGTAACTTCACAATTCAATTCAGTATTC-CA-AACAATA
1 TTCAGTAA-TTCACAATTCAATTCAGTA-TCACATAACAATA
* * *
81001074 TTTAGT-ATTCCATAATTCAGTTCAGTATCA
1 TTCAGTAATT-CACAATTCAATTCAGTATCA
81001104 GTCTCAATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
38 4 0.07
39 16 0.27
40 37 0.62
41 2 0.03
42 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (40 bp):
TTCAGTAATTCACAATTCAATTCAGTATCACATAACAATA
Found at i:81002183 original size:16 final size:15
Alignment explanation
Indices: 81002145--81002187 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
81002135 ATTTAAAAAT
* *
81002145 ATAAATTATAATTTG
1 ATAAATAATAATATG
81002160 ATAGAATAATAATAATG
1 ATA-AATAATAAT-ATG
81002177 ATAAATAATAA
1 ATAAATAATAA
81002188 ATATCTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 16 0.67
17 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (15 bp):
ATAAATAATAATATG
Found at i:81002329 original size:25 final size:27
Alignment explanation
Indices: 81002295--81002356 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 27
81002285 TGGCTTTAAT
*
81002295 TTAATTTAATTCATAATATGATATTTATAA
1 TTAA-TTAATTAATAATAT-AT-TTTATAA
81002325 TTAATTAATTTAATAATATATTTTATAA
1 TTAATTAA-TTAATAATATATTTTATAA
81002353 TTAA
1 TTAA
81002357 ATTATATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 11 0.37
29 6 0.20
30 13 0.43
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
TTAATTAATTAATAATATATTTTATAA
Found at i:81002367 original size:24 final size:23
Alignment explanation
Indices: 81002326--81002380 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
81002316 TATTTATAAT
* **
81002326 TAATTAATTTAATAATATATTTTA
1 TAATTAAATTAATAATAT-TTACA
81002350 TAATTAAATT-ATATATATTTACA
1 TAATTAAATTAATA-ATATTTACA
81002373 TAATTAAA
1 TAATTAAA
81002381 ATCTAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.52
24 13 0.48
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
TAATTAAATTAATAATATTTACA
Found at i:81005078 original size:24 final size:21
Alignment explanation
Indices: 81005027--81005068 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
81005017 TGTATGAGTT
81005027 TATATGATCATTTATTATGTC
1 TATATGATCATTTATTATGTC
81005048 TATATGATCATTTATTATGTC
1 TATATGATCATTTATTATGTC
81005069 AAGTGTATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (21 bp):
TATATGATCATTTATTATGTC
Found at i:81013304 original size:19 final size:19
Alignment explanation
Indices: 81013276--81013320 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
81013266 AACATAAAAG
81013276 AAAA-GAATTAAATTGCTC
1 AAAACGAATTAAATTGCTC
81013294 AAAACGAATTAAATTGCTC
1 AAAACGAATTAAATTGCTC
81013313 AAAACGAA
1 AAAACGAA
81013321 AAAAATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.53, C:0.13, G:0.11, T:0.22
Consensus pattern (19 bp):
AAAACGAATTAAATTGCTC
Found at i:81013326 original size:19 final size:19
Alignment explanation
Indices: 81013285--81013327 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
81013275 GAAAAGAATT
**
81013285 AAATTGCTCAAAACGAATT
1 AAATTGCTCAAAACGAAAA
81013304 AAATTGCTCAAAACGAAAA
1 AAATTGCTCAAAACGAAAA
81013323 AAATT
1 AAATT
81013328 ATAGGGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.23
Consensus pattern (19 bp):
AAATTGCTCAAAACGAAAA
Found at i:81013492 original size:12 final size:12
Alignment explanation
Indices: 81013475--81013500 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81013465 TAAATTAAGC
81013475 TTTTAGTGGCAT
1 TTTTAGTGGCAT
81013487 TTTTAGTGGCAT
1 TTTTAGTGGCAT
81013499 TT
1 TT
81013501 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (12 bp):
TTTTAGTGGCAT
Found at i:81015268 original size:25 final size:25
Alignment explanation
Indices: 81015238--81015289 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
81015228 ATGAAAAGTT
*
81015238 ATTAAATGACAAAGAAAACAATTTC
1 ATTAAATGAAAAAGAAAACAATTTC
81015263 ATTAAATGAAAAAGAAAACAATTTC
1 ATTAAATGAAAAAGAAAACAATTTC
81015288 AT
1 AT
81015290 ATCATCTTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.58, C:0.10, G:0.08, T:0.25
Consensus pattern (25 bp):
ATTAAATGAAAAAGAAAACAATTTC
Found at i:81016258 original size:28 final size:28
Alignment explanation
Indices: 81016223--81016288 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
81016213 CGTGTCTATG
*
81016223 GCCCGTGTCCCTCACACGGCCATGACAC
1 GCCCGTGTCCCTCACACAGCCATGACAC
*
81016251 GCCTGTGTCCCTCACACAGCCATGACAC
1 GCCCGTGTCCCTCACACAGCCATGACAC
81016279 GCCCGTGTCC
1 GCCCGTGTCC
81016289 TAGCCCGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.17, C:0.45, G:0.21, T:0.17
Consensus pattern (28 bp):
GCCCGTGTCCCTCACACAGCCATGACAC
Found at i:81017565 original size:46 final size:47
Alignment explanation
Indices: 81017395--81017641 Score: 156
Period size: 46 Copynumber: 5.3 Consensus size: 47
81017385 CCCAGACATG
* * * *
81017395 GTCTTACTCTGGCTCTCACATCTC-CGTGTCGATGCCATGTCCCAGAAAT
1 GTCTTACACTGGCTCT-ACATCTCAAG-GCCGATG-CATGTCCTAGAAAT
* * *
81017444 GGTCTTACACT-G-AC-ACATCTCATA-GCAGATGCATGTCCTAGACAT
1 -GTCTTACACTGGCTCTACATCTCA-AGGCCGATGCATGTCCTAGAAAT
*
81017489 GTCTTACACTGGCT-TACATCTCGAGGCCGATGCATGTCCTAGAAAT
1 GTCTTACACTGGCTCTACATCTCAAGGCCGATGCATGTCCTAGAAAT
* ** **
81017535 GTCTTACACTAGCTCT-TGTCTCAATTCCGATGCCATGTTCC-A-AACAT
1 GTCTTACACTGGCTCTACATCTCAAGGCCGATG-CATG-TCCTAGAA-AT
* ** * * *
81017582 GGTCTTACACTGGCTCT-CATAAT-GTGGCCAATGCATGTCCTATACAT
1 -GTCTTACACTGGCTCTACAT-CTCAAGGCCGATGCATGTCCTAGAAAT
81017629 GTCTTACACTGGC
1 GTCTTACACTGGC
81017642 GCACAAATGA
Statistics
Matches: 156, Mismatches: 27, Indels: 32
0.73 0.13 0.15
Matches are distributed among these distances:
44 10 0.06
45 14 0.09
46 80 0.51
47 15 0.10
48 26 0.17
49 2 0.01
50 9 0.06
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
GTCTTACACTGGCTCTACATCTCAAGGCCGATGCATGTCCTAGAAAT
Found at i:81022757 original size:30 final size:31
Alignment explanation
Indices: 81022708--81022769 Score: 108
Period size: 30 Copynumber: 2.0 Consensus size: 31
81022698 AAGTAGAAAC
81022708 TAAAAATCAAACAAAAAAACCCACAAATCAT
1 TAAAAATCAAACAAAAAAACCCACAAATCAT
*
81022739 TAAAAATCAAAC-AAAAAACCCATAAATCAT
1 TAAAAATCAAACAAAAAAACCCACAAATCAT
81022769 T
1 T
81022770 CAAGAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 18 0.60
31 12 0.40
ACGTcount: A:0.63, C:0.21, G:0.00, T:0.16
Consensus pattern (31 bp):
TAAAAATCAAACAAAAAAACCCACAAATCAT
Found at i:81025113 original size:19 final size:19
Alignment explanation
Indices: 81025091--81025128 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81025081 AGAAAAATAT
*
81025091 TAAACTTATTAAAAATTAA
1 TAAAATTATTAAAAATTAA
*
81025110 TAAAATTATTTAAAATTAA
1 TAAAATTATTAAAAATTAA
81025129 AATAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAATTATTAAAAATTAA
Found at i:81025135 original size:20 final size:20
Alignment explanation
Indices: 81025091--81025135 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
81025081 AGAAAAATAT
*
81025091 TAAACTTATTAAAAATTAATA
1 TAAA-TTATTAAAAATTAAAA
*
81025112 -AAATTATTTAAAATTAAAA
1 TAAATTATTAAAAATTAAAA
81025131 TAAAT
1 TAAAT
81025136 ATTCAAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAATTATTAAAAATTAAAA
Found at i:81026140 original size:21 final size:21
Alignment explanation
Indices: 81026096--81026140 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
81026086 AAAAAAACAC
*
81026096 AAACTTAAAATTAAAATTCTA
1 AAACTTAAAATTAAAATTCAA
*
81026117 AAAC-TAAAATTTAAATTTCAA
1 AAACTTAAAA-TTAAAATTCAA
81026138 AAA
1 AAA
81026141 ATACAAGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (21 bp):
AAACTTAAAATTAAAATTCAA
Found at i:81043021 original size:45 final size:45
Alignment explanation
Indices: 81042913--81043177 Score: 376
Period size: 45 Copynumber: 6.0 Consensus size: 45
81042903 CTGAATTCAT
* * * *
81042913 TCACCAGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATA
* * *
81042955 TCACTGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
*
81043000 TCACCGGCATTATAGCCTGCTAGGCTCAAATGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
* * *
81043045 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTTTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
*
81043090 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
*
81043135 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
81043178 CTGTACGATA
Statistics
Matches: 201, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
42 9 0.04
43 17 0.08
44 5 0.02
45 169 0.84
46 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATA
Found at i:81044030 original size:25 final size:24
Alignment explanation
Indices: 81044002--81044080 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 24
81043992 TCGGAAATGA
*
81044002 TAAGGGAAACTTTAACCGAAAATAT
1 TAAGGGAAA-TTTAACCGAAATTAT
*
81044027 TAAGAGAAAATTTAACC-AGAATTAT
1 TAAG-GGAAATTTAACCGA-AATTAT
*
81044052 TAAGAGCAAATTTAACCGAAATTAT
1 TAAG-GGAAATTTAACCGAAATTAT
81044077 TAAG
1 TAAG
81044081 AGCAAATTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
24 1 0.02
25 42 0.88
26 5 0.10
ACGTcount: A:0.49, C:0.10, G:0.14, T:0.27
Consensus pattern (24 bp):
TAAGGGAAATTTAACCGAAATTAT
Found at i:81044081 original size:25 final size:25
Alignment explanation
Indices: 81044012--81044088 Score: 120
Period size: 25 Copynumber: 3.1 Consensus size: 25
81044002 TAAGGGAAAC
* *
81044012 TTTAACCGAAAATATTAAGAGAAAA
1 TTTAACCGAAATTATTAAGAGCAAA
81044037 TTTAACC-AGAATTATTAAGAGCAAA
1 TTTAACCGA-AATTATTAAGAGCAAA
81044062 TTTAACCGAAATTATTAAGAGCAAA
1 TTTAACCGAAATTATTAAGAGCAAA
81044087 TT
1 TT
81044089 ATCAAGCTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
24 1 0.02
25 46 0.96
26 1 0.02
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (25 bp):
TTTAACCGAAATTATTAAGAGCAAA
Found at i:81044089 original size:14 final size:14
Alignment explanation
Indices: 81044046--81044090 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
81044036 ATTTAACCAG
81044046 AATTATTAAGAGCA
1 AATTATTAAGAGCA
**
81044060 AA-T-TTAACCG-A
1 AATTATTAAGAGCA
81044071 AATTATTAAGAGCA
1 AATTATTAAGAGCA
81044085 AATTAT
1 AATTAT
81044091 CAAGCTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
11 3 0.12
12 6 0.25
13 6 0.25
14 9 0.38
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (14 bp):
AATTATTAAGAGCA
Found at i:81050568 original size:45 final size:44
Alignment explanation
Indices: 81050478--81050724 Score: 328
Period size: 45 Copynumber: 5.7 Consensus size: 44
81050468 CCGACATTTT
* *
81050478 GCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATATCA-CGGCATTATA
** *
81050521 GCCTGCTAGGCTTGAAGGCCCGAATAGTATGTCACTGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCAC-GGCATTATA
* *
81050566 GCCTGCTAGGCTCAAA-TCCCGAATAGTATATCACCG-ATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACGGCATTATA
*
81050608 GCCTGCTAGGCTC-AAGGCCCGAATAGTATCT-ACGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACGGCATTATA
*
81050650 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACTGGTATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCAC-GGCATTATA
81050695 GCCTGCTAGGCTCAAAGGCCCGAATAGTAT
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTAT
81050725 TGTACGATAT
Statistics
Matches: 183, Mismatches: 12, Indels: 16
0.87 0.06 0.08
Matches are distributed among these distances:
41 5 0.03
42 51 0.28
43 33 0.18
44 24 0.13
45 69 0.38
46 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (44 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACGGCATTATA
Found at i:81050668 original size:129 final size:131
Alignment explanation
Indices: 81050478--81050724 Score: 378
Period size: 129 Copynumber: 1.9 Consensus size: 131
81050468 CCGACATTTT
* **
81050478 GCCTGCTAGGCTCGAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCTTGAAGGCCCG
1 GCCTGCTAGGCTCGAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCG
* *
81050543 AATAGTATGTCACTGGCATTATAGCCTGCTAGGCTCAAA-TCCCGAATAGTATATCACCGATTAT
66 AATAGTATATCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCGATTAT
81050607 A
131 A
81050608 GCCTGCTAGGCTC-AAGGCCCGAATAGT-ATCT-A-CGGCATTATAGCCTGCTAGGCTCAAAGGC
1 GCCTGCTAGGCTCGAA-GCCCG-ATA-TCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGC
*
81050669 CCGAATAGTATATCACTGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
63 CCGAATAGTATATCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
81050725 TGTACGATAT
Statistics
Matches: 107, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
129 69 0.64
130 31 0.29
131 6 0.06
132 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (131 bp):
GCCTGCTAGGCTCGAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCG
AATAGTATATCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCGATTAT
A
Found at i:81051567 original size:25 final size:25
Alignment explanation
Indices: 81051538--81051633 Score: 133
Period size: 25 Copynumber: 3.8 Consensus size: 25
81051528 GTAACTTATT
*
81051538 CGGAAATGA-TAAGGGCAAATTTAAC
1 CGGAAAT-ATTAAGAGCAAATTTAAC
*
81051563 TGGAAATATTAAGAGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
*
81051588 CGGAATTATTAAGAGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
81051613 C-GAAATTATTAAGAGCAAATT
1 CGGAAA-TATTAAGAGCAAATT
81051634 ATCAAGCTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
24 4 0.06
25 60 0.94
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (25 bp):
CGGAAATATTAAGAGCAAATTTAAC
Found at i:81051634 original size:14 final size:14
Alignment explanation
Indices: 81051591--81051635 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
81051581 ATTTAACCGG
81051591 AATTATTAAGAGCA
1 AATTATTAAGAGCA
**
81051605 AA-T-TTAACCG-A
1 AATTATTAAGAGCA
81051616 AATTATTAAGAGCA
1 AATTATTAAGAGCA
81051630 AATTAT
1 AATTAT
81051636 CAAGCTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
11 3 0.12
12 6 0.25
13 6 0.25
14 9 0.38
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (14 bp):
AATTATTAAGAGCA
Found at i:81053974 original size:46 final size:46
Alignment explanation
Indices: 81053915--81054039 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 46
81053905 TTGAGATGAG
*
81053915 AGCTAGTGTAAGACATGTCTGGGACATGCATCGACCT-CGGGATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTACGAGATGT
*
81053960 AAGCTAGTGTAAGACATGTCTGGGACATGCATC-AGCTACGAGATGT
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTACGAGATGT
* *
81054006 -GCCAGTGTAAGACCAAGTCTGGGACATGGCATCG
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
81054040 GCACGTATAG
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
44 11 0.15
45 16 0.23
46 44 0.62
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTACGAGATGT
Found at i:81054067 original size:48 final size:46
Alignment explanation
Indices: 81053919--81054085 Score: 157
Period size: 46 Copynumber: 3.6 Consensus size: 46
81053909 GATGAGAGCT
* * * *
81053919 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCT-CGGGATGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCTACGAGAGGT--GCC
*
81053965 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGATGTGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGAGGTGCC
* * *
81054009 AGTGTAAGACCAAGTCTGGGACATGGCATCGGC-ACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACG---AGAGGTGCC
*
81054057 AGTGTAAGACCATGTTTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
81054086 TGGCCTCAAT
Statistics
Matches: 106, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
44 11 0.10
45 19 0.18
46 42 0.40
48 34 0.32
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGAGGTGCC
Found at i:81056777 original size:44 final size:41
Alignment explanation
Indices: 81056700--81056855 Score: 150
Period size: 43 Copynumber: 3.7 Consensus size: 41
81056690 TTCCATTATG
* **
81056700 TGATTTCGTGTAAGACCACGTCTGGGATGTTGGCATCGACTT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA-TT
* *
81056742 CTGTTTTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATT
1 -TGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCG-ATT
* * * *
81056786 TGATTTCATGTAAGACCCTGTTTGGGACAGTGGCATCGATGTT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA--TT
* * *
81056829 TGATTACATGTAAGACCACGTCTGGGA
1 TGATTTCGTGTAAGACCATGTCTGGGA
81056856 TGTTGACATT
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATT
Found at i:81056844 original size:43 final size:42
Alignment explanation
Indices: 81056747--81056851 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 42
81056737 GACTTCTGTT
* *
81056747 TTACGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGTGGCATCGTATTTGA
* * * * *
81056789 TTTCATGTAAGACCCTGTTTGGGACAGTGGCATCGATGTTTGA
1 TTACATGTAAGACCATGTCTAGGACAGTGGCATCG-TATTTGA
*
81056832 TTACATGTAAGACCACGTCT
1 TTACATGTAAGACCATGTCT
81056852 GGGATGTTGA
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 29 0.57
43 22 0.43
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTAGGACAGTGGCATCGTATTTGA
Found at i:81057532 original size:23 final size:22
Alignment explanation
Indices: 81057501--81057544 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
81057491 TGAATCATAT
*
81057501 GTTTAGGTATGATTTTAGTTTAA
1 GTTTAGGTATGAATTTA-TTTAA
*
81057524 GTTTTGGTATGAATTTATTTA
1 GTTTAGGTATGAATTTATTTA
81057545 TGAATTGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTAGGTATGAATTTATTTAA
Found at i:81065251 original size:43 final size:41
Alignment explanation
Indices: 81065139--81065288 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 41
81065129 CAATGCCAAC
* * *
81065139 GTCCCAGACGTGGTCTTACA-TGTAATCAAATATCGATGCCATT
1 GTCCCAGACATGGTCTTACACT-AAATCAAATA-CGATG-CAAT
* * * *
81065182 GTCCCAGATAGGGTCTTACACGAAATCAAATACGATGTCGAT
1 GTCCCAGACATGGTCTTACACTAAATCAAATACGATG-CAAT
* *
81065224 GTCTCAGACATGGTCTTACACATAAATCATAGGT-CGATGCCAAT
1 GTCCCAGACATGGTCTTACAC-TAAATCA-A-ATACGATG-CAAT
*
81065268 ATCCCAGACATGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
81065289 GAAAACACAT
Statistics
Matches: 86, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
42 25 0.29
43 32 0.37
44 28 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACACTAAATCAAATACGATGCAAT
Found at i:81073983 original size:20 final size:20
Alignment explanation
Indices: 81073946--81073983 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81073936 GATTTCTATA
*
81073946 AAAATTAATTTTGACAAAGT
1 AAAATTAATATTGACAAAGT
81073966 AAAATTAA-ATTGATCAAA
1 AAAATTAATATTGA-CAAA
81073984 TTAATTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.32
Consensus pattern (20 bp):
AAAATTAATATTGACAAAGT
Found at i:81074478 original size:24 final size:24
Alignment explanation
Indices: 81074451--81074517 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 24
81074441 TTAATATTAA
81074451 ATTAAATTTAATATTTATCTAGAT
1 ATTAAATTTAATATTTATCTAGAT
* * *
81074475 ATT-AATATGAGA--TAT-TA-A-
1 ATTAAATTTAATATTTATCTAGAT
81074493 ATTAAATTTAATATTTATCTAGAT
1 ATTAAATTTAATATTTATCTAGAT
81074517 A
1 A
81074518 ATATTTTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 12
0.63 0.12 0.24
Matches are distributed among these distances:
18 3 0.10
19 7 0.23
20 2 0.06
21 6 0.19
22 2 0.06
23 7 0.23
24 4 0.13
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (24 bp):
ATTAAATTTAATATTTATCTAGAT
Found at i:81076587 original size:42 final size:41
Alignment explanation
Indices: 81076484--81076590 Score: 99
Period size: 42 Copynumber: 2.6 Consensus size: 41
81076474 ACATCGATTT
* * * * * **
81076484 CATATCCTAGATATGGTCTTATACGAATTCTCATTTTGACC
1 CATATCCCAGAGATGGTCTTACACGAAATCTCATATCAACC
* *
81076525 CTATGTCCCAGACG-TAGTCTTACACGAAATCTCATATCAACGC
1 C-ATATCCCAGA-GATGGTCTTACACGAAATCTCATATCAAC-C
81076568 CATATCCCAGAGATGGTCTTACA
1 CATATCCCAGAGATGGTCTTACA
81076591 TGATAACTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
41 2 0.04
42 47 0.92
43 2 0.04
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (41 bp):
CATATCCCAGAGATGGTCTTACACGAAATCTCATATCAACC
Found at i:81086345 original size:29 final size:29
Alignment explanation
Indices: 81086313--81086387 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
81086303 TCATATTCAT
* *
81086313 ATGGCCCATTAGACCCAAATCACCGGTAC
1 ATGGCCCATTAGGCCCAAATCACAGGTAC
** *
81086342 ATGGCCCATTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACAGGTAC
81086371 ATGGCCCATTAGGCCCA
1 ATGGCCCATTAGGCCCA
81086388 GTCACATTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACAGGTAC
Found at i:81086632 original size:8 final size:8
Alignment explanation
Indices: 81086619--81086653 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
81086609 ACTGTTGGCT
81086619 TTTCGGCA
1 TTTCGGCA
81086627 TTTCGGCA
1 TTTCGGCA
*
81086635 TTTCAGCA
1 TTTCGGCA
81086643 TTTCGGCA
1 TTTCGGCA
81086651 TTT
1 TTT
81086654 TGGCTTTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (8 bp):
TTTCGGCA
Found at i:81095762 original size:40 final size:40
Alignment explanation
Indices: 81095707--81095850 Score: 243
Period size: 40 Copynumber: 3.6 Consensus size: 40
81095697 ATATATGTGC
* * *
81095707 AAGGCATTCGTGCGGGTTATTAGAGCTGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
81095747 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
81095787 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
* *
81095827 AAGGCATTCGTGCTGGTTGTTATA
1 AAGGCATTCGTGCGGGTTATTATA
81095851 TCCGAGCCAA
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (40 bp):
AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
Found at i:81104077 original size:40 final size:40
Alignment explanation
Indices: 81104022--81104245 Score: 394
Period size: 40 Copynumber: 5.6 Consensus size: 40
81104012 ATATATGTGC
* * *
81104022 AAGGCATTCGTGCGGGATATTATAACCAGGTTAAGTCTCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
81104062 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
81104102 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
* *
81104142 AAGGTATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
81104182 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
*
81104222 AAGGCATTCGTGCTGGTTATTATA
1 AAGGCATTCGTGCGGGTTATTATA
81104246 TCCGAGCCAA
Statistics
Matches: 176, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (40 bp):
AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
Found at i:81106482 original size:21 final size:21
Alignment explanation
Indices: 81106456--81106500 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
81106446 ATTGAAACCA
81106456 TTACTGACTGAGGCACCGATT
1 TTACTGACTGAGGCACCGATT
81106477 TTACTGACTGAGGCACCGATT
1 TTACTGACTGAGGCACCGATT
81106498 TTA
1 TTA
81106501 GTACAACCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (21 bp):
TTACTGACTGAGGCACCGATT
Found at i:81114906 original size:69 final size:69
Alignment explanation
Indices: 81114820--81114958 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
81114810 TGTTTTATGA
*
81114820 AGAAGGTATAATCAATATTACTTTGTTGATAGCCAAAATATATCATGCATTTTCTAAATTTGCCA
1 AGAAGGTATAATCAATATTACTTTGTTGATAACCAAAATATATCATGCATTTTCTAAATTTGCCA
81114885 AACC
66 AACC
*
81114889 AGAAGGTATAATCAATATTACTTTGTTGATAACCAAAATATATCATGCCTTTTCTAAATTTGCCA
1 AGAAGGTATAATCAATATTACTTTGTTGATAACCAAAATATATCATGCATTTTCTAAATTTGCCA
81114954 AACC
66 AACC
81114958 A
1 A
81114959 TGCTCCAAGA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35
Consensus pattern (69 bp):
AGAAGGTATAATCAATATTACTTTGTTGATAACCAAAATATATCATGCATTTTCTAAATTTGCCA
AACC
Found at i:81117103 original size:17 final size:16
Alignment explanation
Indices: 81117073--81117126 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
81117063 TTATGAAAAG
*
81117073 TTTTTTATTCAGTTTAA
1 TTTTTAATT-AGTTTAA
*
81117090 TTTTTCAATTAGTTTAG
1 TTTTT-AATTAGTTTAA
*
81117107 TTTTTACTTAGTTTCAA
1 TTTTTAATTAGTTT-AA
81117124 TTT
1 TTT
81117127 CCCTTTCAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 8 0.26
17 20 0.65
18 3 0.10
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (16 bp):
TTTTTAATTAGTTTAA
Found at i:81119240 original size:42 final size:42
Alignment explanation
Indices: 81119193--81119346 Score: 143
Period size: 42 Copynumber: 3.6 Consensus size: 42
81119183 TAAGATTACG
* *
81119193 TGTAAGACCATATCGGGGATATGGCATCAATATGAAGCTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAAGCTTCA
** * * * *
81119235 TGTAAGACTGTATTTGGGATATGACATTGATATGATA-CTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGA-AGCTTCA
* * *
81119277 TGTAAGACCATAGT-TGGGCTATTGGCATCGATA-CAAGATTACA
1 TGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAAGCTT-CA
*
81119320 TGTAAGACCATATCTGGGTTATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
81119347 TGGTATGGTA
Statistics
Matches: 89, Mismatches: 17, Indels: 12
0.75 0.14 0.10
Matches are distributed among these distances:
41 1 0.01
42 58 0.65
43 30 0.34
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAAGCTTCA
Found at i:81119348 original size:85 final size:84
Alignment explanation
Indices: 81119191--81119358 Score: 187
Period size: 85 Copynumber: 2.0 Consensus size: 84
81119181 ACTAAGATTA
* * ** *
81119191 CGTGTAAGACCATATCGGGGATATGGCATCAATATGAAGCTTCATGTAAGACTGTATTTGGGATA
1 CGTGTAAGACCATATCGGGGATATGGCATCAATATCAAGATTCATGTAAGACCATATCTGGGATA
81119256 TGACATTGATATGATACTT
66 TGACATTGATATGATACTT
* * *
81119275 CGTGTAAGACCATAGT-TGGGCTATTGGCATCGATA-CAAGATTACATGTAAGACCATATCTGGG
1 CGTGTAAGACCATA-TCGGGGATA-TGGCATCAATATCAAGATT-CATGTAAGACCATATCTGGG
* * * *
81119338 TTATGGCATTGGTATGGTACT
63 ATATGACATTGATATGATACT
81119359 GTGTGTACTA
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
84 24 0.35
85 45 0.65
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (84 bp):
CGTGTAAGACCATATCGGGGATATGGCATCAATATCAAGATTCATGTAAGACCATATCTGGGATA
TGACATTGATATGATACTT
Found at i:81123096 original size:13 final size:13
Alignment explanation
Indices: 81123078--81123102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81123068 AATTTATGTT
81123078 TGTGAAAATTTTG
1 TGTGAAAATTTTG
81123091 TGTGAAAATTTT
1 TGTGAAAATTTT
81123103 AGCGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:81124253 original size:44 final size:42
Alignment explanation
Indices: 81124186--81124329 Score: 141
Period size: 44 Copynumber: 3.4 Consensus size: 42
81124176 CAATATGTGT
* * ** *
81124186 TTTCGTGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCATGTTTGGGACATCGGCATCGTA-TT-TGA
*
81124229 TTTATGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGA
*
81124272 TTTCGTGTAAGACCCTGTTTGGGACAGT-GGCATCGATATTTGA
1 TTTCGTGTAAGACCATGTTTGGGACA-TCGGCATCG-TATTTGA
*
81124315 TTACAG-GTAAGACCA
1 TTTC-GTGTAAGACCA
81124330 CATCTAGGAT
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
42 28 0.33
43 28 0.33
44 29 0.34
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGA
Found at i:81124326 original size:43 final size:42
Alignment explanation
Indices: 81124189--81124329 Score: 135
Period size: 42 Copynumber: 3.3 Consensus size: 42
81124179 TATGTGTTTT
* * ** *
81124189 CGTGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCATGTTTGGGACATCGGCATCGTA-TT-TGA-TTA
* *
81124233 TGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTT
1 CGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTA
*
81124275 CGTGTAAGACCCTGTTTGGGACAGT-GGCATCGATATTTGATTA
1 CGTGTAAGACCATGTTTGGGACA-TCGGCATCG-TATTTGATTA
81124318 CAG-GTAAGACCA
1 C-GTGTAAGACCA
81124330 CATCTAGGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.37
43 22 0.27
44 29 0.35
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTA
Found at i:81124544 original size:19 final size:20
Alignment explanation
Indices: 81124522--81124567 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
81124512 CATATGAATT
* *
81124522 ATGTTTGTAT-TATGTGGAA
1 ATGTTTGTATATATGAGAAA
81124541 ATGTGTTGTATATATGAGAAA
1 ATGT-TTGTATATATGAGAAA
81124562 ATGTTT
1 ATGTTT
81124568 ATGAGTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 8 0.35
21 11 0.48
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (20 bp):
ATGTTTGTATATATGAGAAA
Found at i:81128815 original size:48 final size:48
Alignment explanation
Indices: 81128719--81128843 Score: 153
Period size: 48 Copynumber: 2.6 Consensus size: 48
81128709 TTTATGTGAA
* * *
81128719 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTCGACATGTGAG
1 CCAGTGTAAGACCATGTTTGGAACATGGCATCAGCTTCGACATATGAG
* * ***
81128767 CCAGTGTAAGACCATGTTTGGAACATGGCATC-GGTATTGTTTTATGAG
1 CCAGTGTAAGACCATGTTTGGAACATGGCATCAGCT-TCGACATATGAG
*
81128815 CTAGTGTAAGACCATGTTTGGAACATGGC
1 CCAGTGTAAGACCATGTTTGGAACATGGC
81128844 CTCGACATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
47 2 0.03
48 65 0.97
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTTTGGAACATGGCATCAGCTTCGACATATGAG
Found at i:81133545 original size:13 final size:13
Alignment explanation
Indices: 81133527--81133552 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81133517 CAAAATCATA
81133527 ATTATAATAATTT
1 ATTATAATAATTT
81133540 ATTATAATAATTT
1 ATTATAATAATTT
81133553 CAGTAAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:81135760 original size:40 final size:40
Alignment explanation
Indices: 81135703--81135920 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
81135693 CGGATGATAA
* * *
81135703 CCGGGCTAAGTCGCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
81135743 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
81135783 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81135823 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81135863 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
81135903 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81135921 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.10
40 149 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81140559 original size:40 final size:40
Alignment explanation
Indices: 81140504--81140585 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
81140494 TATCCTTTTT
*
81140504 TATTTGGTCCCTGAACTGCACAAATTTGGACGTCGGGCCA
1 TATTTGGTCCCTGAACTGCACAAATTTGGACATCGGGCCA
*
81140544 TATTTGGTCCCTGAACTGCACGAATTTGGACATCGGGCCA
1 TATTTGGTCCCTGAACTGCACAAATTTGGACATCGGGCCA
81140584 TA
1 TA
81140586 CATATTGAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (40 bp):
TATTTGGTCCCTGAACTGCACAAATTTGGACATCGGGCCA
Found at i:81145734 original size:21 final size:21
Alignment explanation
Indices: 81145708--81145765 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
81145698 TTGATTTTAG
*
81145708 GGCTATGTCGCAACACCCTCT
1 GGCTATGTCGCGACACCCTCT
81145729 GGCTATGTCGCGACACCCTCT
1 GGCTATGTCGCGACACCCTCT
* *
81145750 GGTTGTGTCGCGACAC
1 GGCTATGTCGCGACAC
81145766 TGAAGGCAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.24
Consensus pattern (21 bp):
GGCTATGTCGCGACACCCTCT
Found at i:81162542 original size:13 final size:13
Alignment explanation
Indices: 81162524--81162552 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81162514 TCTAGTTTAA
81162524 TTAGTTAATTAGT
1 TTAGTTAATTAGT
81162537 TTAGTTAATTAGT
1 TTAGTTAATTAGT
81162550 TTA
1 TTA
81162553 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:81162870 original size:19 final size:19
Alignment explanation
Indices: 81162846--81162884 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
81162836 GCAATTTAAT
81162846 TTAATTTTA-TTATTATTTC
1 TTAA-TTTACTTATTATTTC
*
81162865 TTAATTTACTTATTCTTTC
1 TTAATTTACTTATTATTTC
81162884 T
1 T
81162885 CTTGGCAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (19 bp):
TTAATTTACTTATTATTTC
Found at i:81171259 original size:17 final size:17
Alignment explanation
Indices: 81171239--81171294 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
81171229 CATACAACCA
81171239 ACATAATAATACCAATC
1 ACATAATAATACCAATC
*
81171256 ACATTAATCA-ACC-AT-
1 ACA-TAATAATACCAATC
*
81171271 TCATAATAATACCAATC
1 ACATAATAATACCAATC
*
81171288 ATATAAT
1 ACATAAT
81171295 CATTCAGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 5 0.17
15 5 0.17
16 4 0.13
17 11 0.37
18 5 0.17
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (17 bp):
ACATAATAATACCAATC
Found at i:81171289 original size:15 final size:15
Alignment explanation
Indices: 81171235--81171294 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
81171225 CATACATACA
81171235 ACCAA-CATAATAAT
1 ACCAATCATAATAAT
* *
81171249 ACCAATCACATTAAT
1 ACCAATCATAATAAT
*
81171264 CAACCATTCATAATAAT
1 --ACCAATCATAATAAT
81171281 ACCAATCAT-ATAAT
1 ACCAATCATAATAAT
81171295 CATTCAGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
14 10 0.27
15 15 0.41
17 12 0.32
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (15 bp):
ACCAATCATAATAAT
Found at i:81174845 original size:44 final size:43
Alignment explanation
Indices: 81174777--81174887 Score: 143
Period size: 44 Copynumber: 2.6 Consensus size: 43
81174767 CCGATATGTG
* * * *
81174777 TTATCGTGTAAGACCATGTTTGGGACGTTAGCATCGATTTTTGAT
1 TTAT-GTGTAAGACCATGTCTGGGACATTAGCATCG-TATATGAT
*
81174822 TTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGAT
1 TTATGTGTAAGACCATGTCTGGGACATTAGCATCGTATATGAT
*
81174865 TT-CGTGTAAGACCATGTCTGGGA
1 TTATGTGTAAGACCATGTCTGGGA
81174888 TAGTGGCATT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 20 0.33
43 8 0.13
44 28 0.47
45 4 0.07
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.36
Consensus pattern (43 bp):
TTATGTGTAAGACCATGTCTGGGACATTAGCATCGTATATGAT
Found at i:81174883 original size:42 final size:43
Alignment explanation
Indices: 81174780--81174939 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
81174770 ATATGTGTTA
* * * *
81174780 TCGTGTAAGACCATGTTTGGGACGTTAGCATCGATTTTTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATT
* *
81174823 TATGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATT
* * * * *
81174866 TCGTGTAAGACCATGTCTGGGATAGTGGCATTGATCTTTTATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATT
* * * *
81174909 ACATGTAAGACCACGTTTGGGACATTGGCAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCAT
81174940 TTTATGAGAT
Statistics
Matches: 96, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 28 0.29
43 40 0.42
44 28 0.29
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.36
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATT
Found at i:81184773 original size:43 final size:42
Alignment explanation
Indices: 81184683--81184797 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
81184673 CATCAATTTG
* * ** *
81184683 TGATTTACGTGTAAGACCATGTCTAGGACATTGGCATCATATA
1 TGATTT-CATGTAAGACCATGTCTGGGACAACGACATCATATA
* *
81184726 TGATTTCATGTAAGACCCTGTCTGGGACAACGACATCGATATT
1 TGATTTCATGTAAGACCATGTCTGGGACAACGACATC-ATATA
* *
81184769 TGATTACATGTAAGACCAGGTCTGGGACA
1 TGATTTCATGTAAGACCATGTCTGGGACA
81184798 TTGGCATTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 25 0.41
43 36 0.59
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (42 bp):
TGATTTCATGTAAGACCATGTCTGGGACAACGACATCATATA
Found at i:81185841 original size:56 final size:56
Alignment explanation
Indices: 81185755--81186042 Score: 549
Period size: 56 Copynumber: 5.1 Consensus size: 56
81185745 ACAAGGGATG
*
81185755 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
81185811 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
81185867 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
81185923 ATTGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
81185979 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
81186035 ATGGGCAA
1 ATGGGCAA
81186043 TAAACTAATA
Statistics
Matches: 229, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 229 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:81187324 original size:79 final size:80
Alignment explanation
Indices: 81187188--81187366 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 80
81187178 TCGAATGATG
* *
81187188 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
81187253 GTGCAAGATACTA-A
66 GTGCAAGATACTATA
* * * **
81187267 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
81187329 TTTGTGCGAGTTACTATA
63 TTTGTGCAAGATACTATA
* *
81187347 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
81187367 AATTTGAACG
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.68
80 26 0.31
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCAAGATACTATA
Found at i:81187379 original size:40 final size:40
Alignment explanation
Indices: 81187188--81187372 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
81187178 TCGAATGATG
* * * *
81187188 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
81187228 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81187268 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81187307 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
81187348 -CCGGGCTATGTCCCGAAGGAATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81187373 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.