Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 244 of 332
Found at i:81187394 original size:79 final size:79
Alignment explanation
Indices: 81187241--81187405 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
81187231 GGACTAAGAT
* * **
81187241 CCGAAGGCATTTGTGCAAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
*
81187306 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
81187320 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGAATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGATACTAAT-ACCGGGCTAAG-CCCGAAGGAATTGGAACGAGTTA-C
* * *
81187383 TATAT-CTGGTTAAATT
63 TAAATCCGGGTTAAATC
81187399 CCGAAGG
1 CCGAAGG
81187406 TACGTGATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.68
80 21 0.30
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:81192059 original size:27 final size:25
Alignment explanation
Indices: 81192013--81192066 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
81192003 TTTCTTGAAT
*
81192013 AAATATTTTTCCTTGAAGTTCTAGA
1 AAATATTTTTCCTTGAAGTTCGAGA
81192038 AAATATTTTTCAACTTTG-AGTTCGAGA
1 AAATATTTTTC--C-TTGAAGTTCGAGA
81192065 AA
1 AA
81192067 TTTTAAGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 11 0.44
27 11 0.44
28 3 0.12
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (25 bp):
AAATATTTTTCCTTGAAGTTCGAGA
Found at i:81203480 original size:50 final size:48
Alignment explanation
Indices: 81203417--81203548 Score: 156
Period size: 48 Copynumber: 2.7 Consensus size: 48
81203407 GGTATAATGT
** * *
81203417 CGATGCCATGTCCCAGACATGGTCTTACACTAGTTATCACATATCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GACACCAC-TATATGTGC
* * *
81203467 CGATGCCATGTCCCAGACATGATCTTACACTGACACCTCTATATGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCACTATATGTGC
* * *
81203515 TGATACCATGTCCCAGACATGGTATTACACTGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC
81203549 GCATCTCATA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 37 0.52
49 4 0.06
50 30 0.42
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCACTATATGTGC
Found at i:81209167 original size:11 final size:11
Alignment explanation
Indices: 81209151--81209185 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
81209141 ATTTTCACAT
81209151 GTTAATAGTTA
1 GTTAATAGTTA
81209162 GTTAATAGTTA
1 GTTAATAGTTA
81209173 GTT-A-AGTTA
1 GTTAATAGTTA
81209182 GTTA
1 GTTA
81209186 TTTGATGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.35
10 1 0.04
11 14 0.61
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (11 bp):
GTTAATAGTTA
Found at i:81213549 original size:48 final size:48
Alignment explanation
Indices: 81213478--81213661 Score: 208
Period size: 48 Copynumber: 3.8 Consensus size: 48
81213468 GTAAGATACT
*
81213478 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCC
* * * *** * *
81213526 GATGCCATGTTCC-GAACATGGTCTTACACTGGCTCACATATTGAGGCT
1 GATGCCATGTCCCAG-ACATGGTCTTACACTAGCTCTCATAACAATGCC
81213574 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCC
* * * * * * *
81213622 AATGACATGTTCCAAACATGGTTTTACACTGGCTCACATA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
81213662 TTGAGGCCAA
Statistics
Matches: 110, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 108 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCC
Found at i:81213640 original size:96 final size:96
Alignment explanation
Indices: 81213476--81213668 Score: 341
Period size: 96 Copynumber: 2.0 Consensus size: 96
81213466 GGGTAAGATA
* * * *
81213476 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATGCCGATGCCATGTTCCGA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
81213541 ACATGGTCTTACACTGGCTCACATATTGAGG
66 ACATGGTCTTACACTGGCTCACATATTGAGG
81213572 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
*
81213637 ACATGGTTTTACACTGGCTCACATATTGAGG
66 ACATGGTCTTACACTGGCTCACATATTGAGG
81213668 C
1 C
81213669 CAATTTCTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 92 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (96 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGACATGTTCCAA
ACATGGTCTTACACTGGCTCACATATTGAGG
Found at i:81220400 original size:108 final size:110
Alignment explanation
Indices: 81220247--81220447 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
81220237 ATCCTTTTGA
* * *
81220247 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTACCCTTGCCTTATG-AA-CTCACC-A
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACACGATACCCTTGCCTTA-GAAACCTCACCGA
81220309 ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** * *
81220355 AACTTATCAATGCCATGTCTTGACATGGTCTTACACGATTTCCTTGCCTTAGAAACCTTACCGAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACACGATACCCTTGCCTTAGAAACCTCACCGAA
81220420 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
81220448 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 5 0.06
110 29 0.35
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACACGATACCCTTGCCTTAGAAACCTCACCGAA
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:81220454 original size:55 final size:53
Alignment explanation
Indices: 81220200--81220454 Score: 261
Period size: 55 Copynumber: 4.8 Consensus size: 53
81220190 ACGCGGGTAC
* * *
81220200 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
81220249 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTACCCTTGCCTTATG-AA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
81220302 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * * * *
81220357 CTTATCAATGCCATGTCTTGACATGGTCTTACACGATTTCCTTGCCTTAGAAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
81220410 CCTTACCGATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACC-ATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
81220455 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
52 4 0.02
53 45 0.27
54 9 0.05
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (53 bp):
CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:81222343 original size:48 final size:48
Alignment explanation
Indices: 81222272--81222547 Score: 250
Period size: 48 Copynumber: 5.8 Consensus size: 48
81222262 GGGTAAGATA
* * * *
81222272 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATT
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
* * * *** *
81222320 CTGATGCAATGTTCCAAACATGGTCTTACACTTGCTCGCATATTGAGG
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
** * * *
81222368 CTTTTGCCATG-TCTTAGACATGGTCTTACACTAGCTCTCATAACAATA
1 CTGATGCCATGTTC-CAAACATGGTCTTACACTAGCTCTCATAACAATG
* * * * * *** *
81222416 CTAATGTCATGTTCCAAACATGGT-TTGCACTGGCTCACATATTGAGG
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
* * * *
81222463 CCGATGCCATGTCCCAAACATTGTCATACACTAGCTCTCATAACAATG
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
* *
81222511 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
1 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTC
81222548 ACATGTACCT
Statistics
Matches: 172, Mismatches: 53, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
47 36 0.21
48 134 0.78
49 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (48 bp):
CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATG
Found at i:81226624 original size:32 final size:33
Alignment explanation
Indices: 81226582--81226674 Score: 100
Period size: 32 Copynumber: 2.8 Consensus size: 33
81226572 CAAGCCCATC
*
81226582 GGGCCTAAGCCC-ATTCAGATAACAGTGATACT
1 GGGCCTAAGCCCTATTCAGATAACAGTGAAACT
* * * *
81226614 GGGCCAAAGCCCTTTTCAGATTACA-TTAAACT
1 GGGCCTAAGCCCTATTCAGATAACAGTGAAACT
*
81226646 GGGCCTTAGCCCCTTATTCAGATAACAGT
1 GGGCCTAAG-CCC-TATTCAGATAACAGT
81226675 ATGGCCCATA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
32 23 0.48
33 13 0.27
34 11 0.23
35 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (33 bp):
GGGCCTAAGCCCTATTCAGATAACAGTGAAACT
Found at i:81227024 original size:25 final size:27
Alignment explanation
Indices: 81226983--81227037 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
81226973 AGTCAGACAT
81226983 GTATTTAGGTCAATTTAAC-CCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
* *
81227009 GTATTTCGGT-AATTTATCTCCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
81227035 GTA
1 GTA
81227038 AAACTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (27 bp):
GTATTTAGGTCAATTTAACTCCTAGGG
Found at i:81237211 original size:25 final size:25
Alignment explanation
Indices: 81237151--81237246 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
81237141 AGCTGGAAAT
*
81237151 GGTAAGCTCCTCCGAGATGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
*** * *
81237176 CAAAAGTTCCTCTGAGCTGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* *
81237201 GGTAAGCTCCTCCGAGCTGAGTATC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* * *
81237226 AGTAAGCTCATACGAGCTGAA
1 GGTAAGCTCCTCCGAGCTGAA
81237247 ATTGGTAACC
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAC
Found at i:81237399 original size:13 final size:13
Alignment explanation
Indices: 81237381--81237440 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
81237371 TCAAAGAATA
81237381 TAATTACACAATT
1 TAATTACACAATT
*
81237394 TAATTACACGAACT
1 TAATTACAC-AATT
* *
81237408 TACA--A-AGAATA
1 TA-ATTACACAATT
81237419 TAATTACACAATT
1 TAATTACACAATT
81237432 TAATTACAC
1 TAATTACAC
81237441 GAACTTACCT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
10 1 0.03
11 4 0.11
12 2 0.06
13 23 0.64
14 5 0.14
15 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.32
Consensus pattern (13 bp):
TAATTACACAATT
Found at i:81237423 original size:38 final size:38
Alignment explanation
Indices: 81237372--81237448 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
81237362 CTAATCCAAT
81237372 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
1 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
81237410 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
1 CAAAGAATATAATTACACAATTTAATTACACGAACTTA
81237448 C
1 C
81237449 CTCGACGAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (38 bp):
CAAAGAATATAATTACACAATTTAATTACACGAACTTA
Found at i:81239579 original size:45 final size:45
Alignment explanation
Indices: 81239507--81239682 Score: 266
Period size: 45 Copynumber: 4.0 Consensus size: 45
81239497 TATTGTACAC
*
81239507 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
81239552 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
81239597 TACTATTCGAGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
81239642 CACTAATCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
81239683 ATGAATTCAG
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 12 0.10
44 13 0.11
45 95 0.79
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:81246179 original size:45 final size:45
Alignment explanation
Indices: 81246105--81246280 Score: 248
Period size: 45 Copynumber: 4.0 Consensus size: 45
81246095 TATTGTACAC
* *
81246105 TACTATTTGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
81246150 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
81246195 TACTATTCGAGCCTTTGAGCTTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
81246240 CACTAATCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
81246281 ATGAATTCGG
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
43 10 0.09
44 14 0.12
45 93 0.79
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:81261795 original size:30 final size:29
Alignment explanation
Indices: 81261761--81261834 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
81261751 CCGTGTGCTA
81261761 GGCCGTGTCCC-ACACATGGTTGAGACACAC
1 GGCCGTGTCCCTACACA--GTTGAGACACAC
81261791 GGCCGTGTCCCTTACACAGTTGAGACACAC
1 GGCCGTGTCCC-TACACAGTTGAGACACAC
* * *
81261821 AGCCATGTCTCTAC
1 GGCCGTGTCCCTAC
81261835 CCGTGTGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
29 3 0.08
30 31 0.79
32 5 0.13
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (29 bp):
GGCCGTGTCCCTACACAGTTGAGACACAC
Found at i:81262808 original size:46 final size:45
Alignment explanation
Indices: 81262758--81262924 Score: 146
Period size: 46 Copynumber: 3.6 Consensus size: 45
81262748 TCTCATAGCT
81262758 GATGCATGTCCCAGACATGTCTTACACTGGCTTATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTATATCTCGA-GCC
* * * * *
81262804 GATGCATGTCCCAGACATGTCTTATACTAGC--ACTCGTCTCAATACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTA-T-ATCTCGA-GCC
*
81262850 GATGCGATGTCCC-GACATGGTCTTACACTGGCTCTCATA-AT-GTAGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-T-ATATCTCG-AGCC
* *
81262897 AATGCATGTCCCAAACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
81262925 AGCTCACAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 63 0.65
47 28 0.29
48 2 0.02
50 1 0.01
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTATATCTCGAGCC
Found at i:81262877 original size:93 final size:92
Alignment explanation
Indices: 81262758--81262927 Score: 231
Period size: 93 Copynumber: 1.8 Consensus size: 92
81262748 TCTCATAGCT
* * *
81262758 GATGCATGTCCCAGACATGTCTTACACTGGCT-T-AT-ATCTCGAGGCCGATGCATGTCCCAGAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGT--A-GCCAATGCATGTCCCAAAC
*
81262820 ATGTCTTATACTAGCACTCGTCTCAATACC
63 ATGTCTTACACTAGCACTCGTCTCAATACC
81262850 GATGCGATGTCCC-GACATGGTCTTACACTGGCTCTCATAATGTAGCCAATGCATGTCCCAAACA
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTAGCCAATGCATGTCCCAAACA
81262914 TGTCTTACACTAGC
64 TGTCTTACACTAGC
81262928 TCACAATAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
92 10 0.14
93 52 0.75
94 2 0.03
95 2 0.03
96 3 0.04
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTAGCCAATGCATGTCCCAAACATG
TCTTACACTAGCACTCGTCTCAATACC
Found at i:81265377 original size:21 final size:21
Alignment explanation
Indices: 81265351--81265397 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
81265341 ATCGATGGCA
*
81265351 AGTTCGGATGATGGTAATTCT
1 AGTTCGAATGATGGTAATTCT
81265372 AGTTCGAATGATGGTAATTCT
1 AGTTCGAATGATGGTAATTCT
81265393 AGTTC
1 AGTTC
81265398 AGGCTAGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.38
Consensus pattern (21 bp):
AGTTCGAATGATGGTAATTCT
Found at i:81267877 original size:45 final size:44
Alignment explanation
Indices: 81267725--81267923 Score: 161
Period size: 45 Copynumber: 4.5 Consensus size: 44
81267715 AGAAACAAGA
* * * * * **
81267725 AAGACCAT-GATTGAAAGATATGATGGCATTTTACCCAAAATGAGG
1 AAGACCATAG-TTGAAAGATATTAAGGCA-TTAAACCAGAATGAAT
* * *
81267770 AAGACCATAGTTGAAAGATAATAAGGCATTAAATCGGAATGAAT
1 AAGACCATAGTTGAAAGATATTAAGGCATTAAACCAGAATGAAT
* * * * *
81267814 AAGACCACAATTGAAAGATATTATGGCATTAAACCATATATGTAT
1 AAGACCATAGTTGAAAGATATTAAGGCATTAAACCAGA-ATGAAT
* *
81267859 AGGACCATAGTTGAAAGATATTAGGGCATTAAATCC--AATGCAAAT
1 AAGACCATAGTTGAAAGATATTAAGGCATTAAA-CCAGAATG--AAT
*
81267904 AAGATCATAGTTGAAAGATA
1 AAGACCATAGTTGAAAGATA
81267924 CTAGGCACTA
Statistics
Matches: 124, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
43 3 0.02
44 41 0.33
45 77 0.62
46 3 0.02
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (44 bp):
AAGACCATAGTTGAAAGATATTAAGGCATTAAACCAGAATGAAT
Found at i:81276579 original size:26 final size:26
Alignment explanation
Indices: 81276533--81276583 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81276523 TAGCCATTCA
* *
81276533 AACATGCATTAATATATTATCAAAAT
1 AACATGCATCAATATAGTATCAAAAT
81276559 AACATGCATCAATA-AGGTATCAAAA
1 AACATGCATCAATATA-GTATCAAAA
81276584 GTACCAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (26 bp):
AACATGCATCAATATAGTATCAAAAT
Found at i:81280370 original size:50 final size:50
Alignment explanation
Indices: 81280253--81280695 Score: 435
Period size: 50 Copynumber: 8.8 Consensus size: 50
81280243 TGTGAGAACG
* * ** *
81280253 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTT-TTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCA-GATTGTTAGGTCA
** * *
81280305 TGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * * * *
81280355 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGTTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCA
* * *
81280406 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * * *
81280456 CATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTGATAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
*** * * *
81280506 CATGTGTAGTACTAAGTGCAGGCTACTATACGTACTC-GATAGTTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCA
* * * * * *
81280557 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGATAAGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * * *
81280607 -AGTGTGCAGTATTAAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCA
1 CA-TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* *
81280657 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
81280696 GAGCTTCGGT
Statistics
Matches: 319, Mismatches: 63, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
49 3 0.01
50 209 0.66
51 80 0.25
52 27 0.08
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
Found at i:81280438 original size:101 final size:102
Alignment explanation
Indices: 81280253--81280695 Score: 470
Period size: 101 Copynumber: 4.4 Consensus size: 102
81280243 TGTGAGAACG
* * * * *
81280253 CATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGACGGTTTTAGGTCATGTGTGTAGTAC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATGG-TTTAGGTCACGTGTGTAGTAC
* *
81280317 TAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCG
65 TAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
* * * *
81280355 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAGTTTCGATCACGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATGGTTTAGGTCACGTGTGTAGTACT
* *
81280419 AAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
66 AAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
** * * * * *
81280456 CATGTGTAGTACTAAGTGCAGGCTACTACATGTAC-CGGATTG-ATAGGTCGCATGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATGGTTTAGGTCACGTGTGTAGTACT
*** * * *
81280519 AAGTGCAGGCTACTATACGTACTC-GATAGTTTCGATCA
66 AAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGTCA
* * * * * * * *
81280557 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAAATGG-ATAAGTCAAGTGTGCAGTATT
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATGGTTTAGGTCACGTGTGTAGTACT
* *
81280620 AAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCA
66 AAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
*
81280657 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGA
81280696 GAGCTTCGGT
Statistics
Matches: 282, Mismatches: 52, Indels: 16
0.81 0.15 0.05
Matches are distributed among these distances:
100 78 0.28
101 169 0.60
102 34 0.12
103 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (102 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCAGATGGTTTAGGTCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCA
Found at i:81280531 original size:151 final size:150
Alignment explanation
Indices: 81280255--81280691 Score: 667
Period size: 151 Copynumber: 2.9 Consensus size: 150
81280245 TGAGAACGCA
* * * * * *
81280255 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTTTTAGGTCATGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCA-ATGTGTAGTACTAA
* *
81280320 GTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
63 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
81280385 CGTACTCGATAGTTTCGATCACG
128 CGTACTCGATAGTTTCGATCACG
81280408 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA-ATGTGTAGTACTAAGT
* * *
81280473 GCAGGCTACTACATGTACCGGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATACG
65 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
81280538 TACTCGATAGTTTCGATCACG
130 TACTCGATAGTTTCGATCACG
* * * * *
81280559 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGATAAGTCAAGTGTGCAGTATTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAA-TGTGTAGTACTAAGT
* *
81280624 GCAGGCTACTACGTGTACTAGATTGATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCG
65 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
81280689 TAC
130 TAC
81280692 CAGAGAGCTT
Statistics
Matches: 261, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
150 1 0.00
151 225 0.86
153 35 0.13
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (150 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAATGTGTAGTACTAAGTG
CAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
ACTCGATAGTTTCGATCACG
Found at i:81281492 original size:180 final size:180
Alignment explanation
Indices: 81281233--81281570 Score: 478
Period size: 180 Copynumber: 1.9 Consensus size: 180
81281223 TCCAAGATCT
* * * * *
81281233 GTACCATGAGATAAATAATTTTTCGTGAAGAAAGGTTGGAACTATCAGATAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGGTCGGAACTATCAGACAATGAAACAGGGGTA
** * *
81281298 TCTTTAACGAATAAAATATACTAATTGGCTAAACAAAAAATTCTTAAAACTTTATGGAAATAATA
66 AATTTAACGAATAAAATATACTAATTGGCTAAACAAAAAATTCTAAAAACTTTATGGAAAGAATA
81281363 TATATGAGTCTAGTTTCTGATAAAATTAGTTGTTCTTAATTTGGAGTCCC
131 TATATGAGTCTAGTTTCTGATAAAATTAGTTGTTCTTAATTTGGAGTCCC
* * ** *
81281413 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTTGGACAATGAAACAGTGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGGTCGGAACTATCAGACAATGAAACAGGGGTA
* * * * * *
81281478 AATTTAATGAATAAATTGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATA
66 AATTTAACGAATAAAATATACTAATTGGCTAAACAAAAAATTCTAAAAACTTTATGGAAAGAATA
* *
81281543 TATGTGAGTCTAGTTTCTGGTAAAATTA
131 TATATGAGTCTAGTTTCTGATAAAATTA
81281571 ACAGATCTTA
Statistics
Matches: 136, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
180 136 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.33
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGGTCGGAACTATCAGACAATGAAACAGGGGTA
AATTTAACGAATAAAATATACTAATTGGCTAAACAAAAAATTCTAAAAACTTTATGGAAAGAATA
TATATGAGTCTAGTTTCTGATAAAATTAGTTGTTCTTAATTTGGAGTCCC
Found at i:81284447 original size:40 final size:40
Alignment explanation
Indices: 81284356--81284579 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
81284346 GCTCCTCGTT
* *
81284356 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACT--CA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
81284394 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
81284434 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
81284474 CAAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
81284514 CAAAGGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
81284555 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
81284580 CATCATTCAA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
38 31 0.19
39 5 0.03
40 119 0.72
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:81292439 original size:39 final size:40
Alignment explanation
Indices: 81292289--81292513 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
81292279 GCTCCTCGTT
* *
81292289 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
81292329 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
81292369 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
81292409 CAAATGCCTTCGGG-CTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
81292448 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
81292489 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
81292514 CATCATTCAA
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 35 0.21
40 117 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:81292473 original size:119 final size:120
Alignment explanation
Indices: 81292289--81292513 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
81292279 GCTCCTCGTT
* *
81292289 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
81292354 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * **
81292409 CAAATGCCTTCGGG-CTTAACCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
81292471 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
81292514 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 4 0.04
119 65 0.71
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:81296404 original size:24 final size:24
Alignment explanation
Indices: 81296376--81296422 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
81296366 AGTATATACC
* *
81296376 AATTCAATCA-ATATAAATTCAATA
1 AATTC-ATCACATACAAAATCAATA
81296400 AATTCATCACATACAAAATCAAT
1 AATTCATCACATACAAAATCAAT
81296423 CCATTTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (24 bp):
AATTCATCACATACAAAATCAATA
Found at i:81297668 original size:29 final size:28
Alignment explanation
Indices: 81297617--81297671 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
81297607 GATGGTGGAA
*
81297617 GTAGTGGGCGGTTTTGGGAGATTGAGGG
1 GTAGTGGGAGGTTTTGGGAGATTGAGGG
81297645 GTAGTGGGAGTGTTTTGTGG-GATTGAG
1 GTAGTGGGAG-GTTTTG-GGAGATTGAG
81297672 TAGTAATCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 9 0.38
29 13 0.54
30 2 0.08
ACGTcount: A:0.15, C:0.02, G:0.51, T:0.33
Consensus pattern (28 bp):
GTAGTGGGAGGTTTTGGGAGATTGAGGG
Found at i:81303033 original size:19 final size:17
Alignment explanation
Indices: 81302990--81303033 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
81302980 TAAAATTGCC
*
81302990 TTAAAATTATAAAAAAA
1 TTAAAATCATAAAAAAA
81303007 TTATAAATCATAAAAATAA
1 TTA-AAATCATAAAAA-AA
81303026 TTGAAAAT
1 TT-AAAAT
81303034 ATGGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 3 0.13
18 11 0.48
19 8 0.35
20 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
TTAAAATCATAAAAAAA
Found at i:81303356 original size:16 final size:16
Alignment explanation
Indices: 81303332--81303383 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
81303322 TAGTTCACTA
* *
81303332 TAATGGAATAGGGCTG
1 TAATTGAATAGAGCTG
81303348 TAATTGAATAGAGCTG
1 TAATTGAATAGAGCTG
*
81303364 TAATTGAATAGAGTTG
1 TAATTGAATAGAGCTG
81303380 TAAT
1 TAAT
81303384 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.33
Consensus pattern (16 bp):
TAATTGAATAGAGCTG
Found at i:81303453 original size:44 final size:46
Alignment explanation
Indices: 81303369--81303457 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 46
81303359 AGCTGTAATT
*
81303369 GAATAGAGTTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
***
81303415 GAATAGAGCTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAAT
81303458 AGATGTTGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 22 0.56
45 3 0.08
46 14 0.36
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (46 bp):
GAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
Found at i:81303566 original size:25 final size:27
Alignment explanation
Indices: 81303538--81303589 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81303528 ATAATTATTG
*
81303538 TTATTGTT-ATTA-AATTTTAATAAAA
1 TTATTGTTAAATATAATTTTAATAAAA
*
81303563 TTATTGTTAAATATATTTTTAATAAAA
1 TTATTGTTAAATATAATTTTAATAAAA
81303590 ATAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 8 0.35
26 3 0.13
27 12 0.52
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (27 bp):
TTATTGTTAAATATAATTTTAATAAAA
Found at i:81303722 original size:23 final size:21
Alignment explanation
Indices: 81303696--81303738 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
81303686 TATTATATGA
81303696 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
81303719 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
81303739 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:81310652 original size:13 final size:13
Alignment explanation
Indices: 81310634--81310660 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81310624 GTAAAATTTG
81310634 TAACAAATTTCAC
1 TAACAAATTTCAC
81310647 TAACAAATTTCAC
1 TAACAAATTTCAC
81310660 T
1 T
81310661 CTAGAGAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (13 bp):
TAACAAATTTCAC
Found at i:81318068 original size:9 final size:9
Alignment explanation
Indices: 81318054--81318155 Score: 93
Period size: 9 Copynumber: 11.2 Consensus size: 9
81318044 TAATGACTTT
81318054 TTTTTATAA
1 TTTTTATAA
*
81318063 TTTTTATTA
1 TTTTTATAA
81318072 -TTTTATCAA
1 TTTTTAT-AA
*
81318081 TTTTCATAA
1 TTTTTATAA
*
81318090 TTTTTATTA
1 TTTTTATAA
*
81318099 TTTTTATTA
1 TTTTTATAA
*
81318108 -TTTTA-AT
1 TTTTTATAA
81318115 TTTTTATAAA
1 TTTTTAT-AA
81318125 TTTTATATAA
1 TTTT-TATAA
*
81318135 TTTTTATGA
1 TTTTTATAA
81318144 TTTTTAATAA
1 TTTTT-ATAA
81318154 TT
1 TT
81318156 CTTAATATTT
Statistics
Matches: 76, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
8 16 0.21
9 36 0.47
10 21 0.28
11 3 0.04
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:81318102 original size:36 final size:35
Alignment explanation
Indices: 81318054--81318147 Score: 118
Period size: 36 Copynumber: 2.6 Consensus size: 35
81318044 TAATGACTTT
81318054 TTTTTATAATTTTTATTATTTTATCAATTTTCAT-AA
1 TTTTTATAATTTTTATTATTTTA--AATTTTCATAAA
* * *
81318090 TTTTTATTATTTTTATTATTTTAATTTTTTATAAA
1 TTTTTATAATTTTTATTATTTTAAATTTTCATAAA
*
81318125 TTTTATATAATTTTTATGATTTT
1 TTTT-TATAATTTTTATTATTTT
81318148 TAATAATTCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
34 7 0.14
35 6 0.12
36 38 0.75
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (35 bp):
TTTTTATAATTTTTATTATTTTAAATTTTCATAAA
Found at i:81319076 original size:6 final size:6
Alignment explanation
Indices: 81319065--81319101 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
81319055 GAAAACTCTA
81319065 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT A
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT A
81319102 GAATAAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAAATT
Found at i:81325640 original size:18 final size:18
Alignment explanation
Indices: 81325617--81325651 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81325607 TAGTCTTTTA
*
81325617 GATGCACTTGTTGAGTGT
1 GATGCACTGGTTGAGTGT
81325635 GATGCACTGGTTGAGTG
1 GATGCACTGGTTGAGTG
81325652 CTAATCACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.11, G:0.37, T:0.34
Consensus pattern (18 bp):
GATGCACTGGTTGAGTGT
Found at i:81332484 original size:37 final size:37
Alignment explanation
Indices: 81332434--81332508 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
81332424 TTGGGCAATC
81332434 TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
1 TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
81332471 TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
1 TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
81332508 T
1 T
81332509 CAAGTATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (37 bp):
TACTTGACCATCATGGATGTGCTATATGATCTAAAAA
Found at i:81338518 original size:16 final size:16
Alignment explanation
Indices: 81338475--81338519 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
81338465 AGCTTAAAAC
*
81338475 ATAATAAATTCAATAT
1 ATAATAAATTCAAGAT
* *
81338491 CTAACAAATTCAAGAT
1 ATAATAAATTCAAGAT
*
81338507 ATAATAATTTCAA
1 ATAATAAATTCAA
81338520 AATCCAACAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.11, G:0.02, T:0.33
Consensus pattern (16 bp):
ATAATAAATTCAAGAT
Found at i:81353145 original size:49 final size:47
Alignment explanation
Indices: 81353045--81353294 Score: 177
Period size: 49 Copynumber: 5.3 Consensus size: 47
81353035 GTTCCAAACA
*
81353045 AGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATGTCCCAGAC
1 AGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATATCCCAGAC
* ** *
81353092 AGGTCTTACACTGGTTCTCACTTATCTGTGTCGATGCCATATCCCAGAT
1 AGGTCTTACACTGGCTCTCAC--ATCTAAGTCGATGCCATATCCCAGAC
* * * *
81353141 AGGTCTTACACT-G-ACACACCTC-AAG-CTGATGCCATGTCCCAGAC
1 AGGTCTTACACTGGCTCTCACATCTAAGTC-GATGCCATATCCCAGAC
** * * * * * * *
81353185 AGGTCTTACACTAACT-TGCATATATTGAGGCCGATGCCGTGTCCCAGGC
1 AGGTCTTACACTGGCTCT-CACAT-CT-AAGTCGATGCCATATCCCAGAC
*** * **
81353234 AGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCTTAGAC
1 AGGTCTTACACTGGCTCTCA-C-ATCTAAGTCGATGCCATATCCCAGAC
81353283 AGGTCTTACACT
1 AGGTCTTACACT
81353295 AGCATACACA
Statistics
Matches: 157, Mismatches: 33, Indels: 24
0.73 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.18
45 2 0.01
46 3 0.02
47 24 0.15
48 1 0.01
49 94 0.60
50 2 0.01
51 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
AGGTCTTACACTGGCTCTCACATCTAAGTCGATGCCATATCCCAGAC
Found at i:81353220 original size:93 final size:93
Alignment explanation
Indices: 81353075--81353246 Score: 215
Period size: 93 Copynumber: 1.8 Consensus size: 93
81353065 CATCTAAGTC
** * * *
81353075 GATGCCATGTCCCAGACAGGTCTTACACTGGTTCTCACTTATCTGTGTCGATGCCATATCCCAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTACTTCGCACTTATCTGGGCCGATGCCATATCCCAGA
*
81353140 TAGGTCTTACACTGACACACCTCAAGCT
66 CAGGTCTTACACTGACACACCTCAAGCT
* *
81353168 GATGCCATGTCCCAGACAGGTCTTACACTAACTT-GCA-TATAT-TGAGGCCGATGCCGTGTCCC
1 GATGCCATGTCCCAGACAGGTCTTACACT-ACTTCGCACT-TATCTG-GGCCGATGCCATATCCC
*
81353230 AGGCAGGTCTTACACTG
63 AGACAGGTCTTACACTG
81353247 GCTCTCATCT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 3 0.04
93 62 0.93
94 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACAGGTCTTACACTACTTCGCACTTATCTGGGCCGATGCCATATCCCAGA
CAGGTCTTACACTGACACACCTCAAGCT
Found at i:81373997 original size:43 final size:42
Alignment explanation
Indices: 81373942--81374096 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 42
81373932 ATATCGTACA
* *
81373942 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* * *
81373985 ATGCCACTGTCCCAGATAG-GGCCTTACACGAATCTA-ATA-CG
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACGAATC-ACATATCG
* * *
81374026 ATGCCAATGTCCCAAACATGGTCTTACACATAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-GAATCACATATCG
* *
81374069 ATGCCAATGTCCTAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
81374097 TGAGAAAAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
41 26 0.29
42 14 0.15
43 50 0.55
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:81374038 original size:41 final size:43
Alignment explanation
Indices: 81373973--81374085 Score: 133
Period size: 41 Copynumber: 2.7 Consensus size: 43
81373963 TCTTACATGC
*
81373973 AATCACATATCGATGCCACTGTCCCAGATAGGGCCTTACAC-G
1 AATCACATATCGATGCCAATGTCCCAGATAGGGCCTTACACAG
* * * * *
81374015 AATCTA-ATA-CGATGCCAATGTCCCAAACATGGTCTTACACAT
1 AATC-ACATATCGATGCCAATGTCCCAGATAGGGCCTTACACAG
*
81374057 AATCACATATCGATGCCAATGTCCTAGAT
1 AATCACATATCGATGCCAATGTCCCAGAT
81374086 GTGGTCTTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
41 27 0.47
42 14 0.24
43 17 0.29
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTCCCAGATAGGGCCTTACACAG
Found at i:81381051 original size:16 final size:18
Alignment explanation
Indices: 81381030--81381071 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
81381020 ATGCATGATG
81381030 GAAAACACA-G-TTTTAT
1 GAAAACACAGGTTTTTAT
* *
81381046 GAAAACAAAGGTTTTTCT
1 GAAAACACAGGTTTTTAT
81381064 GAAAACAC
1 GAAAACAC
81381072 GAATTGAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 8 0.38
17 1 0.05
18 12 0.57
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.26
Consensus pattern (18 bp):
GAAAACACAGGTTTTTAT
Found at i:81399339 original size:17 final size:17
Alignment explanation
Indices: 81399319--81399351 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81399309 TAATTTTTTC
*
81399319 AAACAAATTGATTAATA
1 AAACAAATTCATTAATA
81399336 AAACAAATTCATTAAT
1 AAACAAATTCATTAAT
81399352 TACAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
AAACAAATTCATTAATA
Found at i:81402313 original size:47 final size:47
Alignment explanation
Indices: 81402255--81402384 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 47
81402245 GTGCAAATAA
* * * * *
81402255 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTCAAAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCAAAGAGAAAT
*** *
81402302 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCTGGGATAAAT
1 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCAAAGAGAAAT
* *
81402349 TACCTTGATTTGGCTACGGGCCATAATATAGATACT
1 TACCTTGATTTGGCTACGGGCCATAGTATAGGTACT
81402385 TATCGATTGA
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATAGTATAGGTACTCAAAGAGAAAT
Found at i:81405689 original size:24 final size:24
Alignment explanation
Indices: 81405643--81405695 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
81405633 AAAGTCTGTC
**
81405643 AGGAGAGGATTTAGGAGTTGATAA
1 AGGAGAGGATTTAGGAGCAGATAA
*
81405667 AGGATAGGATTTAGGAGCAGATAA
1 AGGAGAGGATTTAGGAGCAGATAA
*
81405691 GGGAG
1 AGGAG
81405696 GAAATCTAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.02, G:0.40, T:0.21
Consensus pattern (24 bp):
AGGAGAGGATTTAGGAGCAGATAA
Found at i:81407159 original size:28 final size:26
Alignment explanation
Indices: 81407067--81407178 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
81407057 AGGAAGCGTC
* *
81407067 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
81407094 CTGGTGGCTTTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
81407121 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
81407149 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
81407175 CTGG
1 CTGG
81407179 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:81407173 original size:54 final size:54
Alignment explanation
Indices: 81407067--81407178 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
81407057 AGGAAGCGTC
* * *
81407067 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
81407121 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
81407175 CTGG
1 CTGG
81407179 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:81408262 original size:11 final size:10
Alignment explanation
Indices: 81408234--81408267 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
81408224 AGCCTGTAAG
81408234 TATTCTGAAT
1 TATTCTGAAT
*
81408244 TTTTCTGAAT
1 TATTCTGAAT
81408254 ATATTCTGAAT
1 -TATTCTGAAT
81408265 TAT
1 TAT
81408268 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:81414925 original size:27 final size:27
Alignment explanation
Indices: 81414885--81414990 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
81414875 AGGAAGCGTC
*
81414885 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
81414912 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
81414939 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
81414967 CTGGTGACTCTGTCAC-ATTATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
81414991 TTCTACCAGC
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.04
27 49 0.70
28 18 0.26
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:81414991 original size:54 final size:54
Alignment explanation
Indices: 81414885--81414994 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
81414875 AGGAAGCGTC
* *
81414885 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
81414939 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
81414993 CT
1 CT
81414995 ACCAGCCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:81416042 original size:56 final size:54
Alignment explanation
Indices: 81415923--81416077 Score: 159
Period size: 56 Copynumber: 2.8 Consensus size: 54
81415913 CATGACATAG
* * *
81415923 CACGCCTCTCGACAGGGCTACATATGAGCACCCAGACCTAGCATGCATCACATTAC
1 CACGCCTCTCAACAGGGCTACATA--AGCTCCCAGACCTAGCATGCACCACATTAC
* * *
81415979 CACGCCTCTCAACAGGGCTACATAAGCTCCCGGACCTAGCGTGTACCACATAATTA-
1 CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGCACCAC---ATTAC
* ** * *
81416035 CATGCCTCTCAATGGGGCTACACAAGCTCCCAGACCTGGCATG
1 CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATG
81416078 TATCATGTCA
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
54 20 0.24
56 59 0.71
57 4 0.05
ACGTcount: A:0.27, C:0.35, G:0.19, T:0.19
Consensus pattern (54 bp):
CACGCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGCACCACATTAC
Found at i:81419545 original size:26 final size:26
Alignment explanation
Indices: 81419516--81419588 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
81419506 CCCATTATAT
*
81419516 GGCTCTTCGTGAGCTTCTCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * * * *
81419542 GGCTATTTGTAAGCTTCCCAATTAAC
1 GGCTCTTCGTGAGCTTCCCGATTAAA
*
81419568 GGCTCTCCG-GAGCTTCCCGAT
1 GGCTCTTCGTGAGCTTCCCGAT
81419589 ATGGCCCGCT
Statistics
Matches: 36, Mismatches: 11, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
25 10 0.28
26 26 0.72
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:81424822 original size:18 final size:18
Alignment explanation
Indices: 81424799--81424839 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
81424789 TCTCCTCTCC
* *
81424799 TCTTCAACTTTTTCTTTT
1 TCTTCAAATTTTTATTTT
81424817 TCTTCAAATTTTTATTTT
1 TCTTCAAATTTTTATTTT
81424835 TCTTC
1 TCTTC
81424840 TTTTCCTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (18 bp):
TCTTCAAATTTTTATTTT
Found at i:81426377 original size:33 final size:34
Alignment explanation
Indices: 81426300--81426380 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
81426290 TATGGGCCAT
*
81426300 ACTGTTATCTGAATAAGGGGCTAAAGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAAGCCCAGTTC
* * ***
81426334 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAAGCCCAGT-TC
81426367 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
81426381 GGGCTTCGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAAGCCCAGTTC
Found at i:81428062 original size:21 final size:21
Alignment explanation
Indices: 81428028--81428075 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
81428018 GTCACACGCT
* * **
81428028 CGTGTAAATGTGGGACATGCC
1 CGTGTGAATATGGGACACACC
81428049 CGTGTGAATATGGGACACACC
1 CGTGTGAATATGGGACACACC
81428070 CGTGTG
1 CGTGTG
81428076 GGTAGACCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (21 bp):
CGTGTGAATATGGGACACACC
Found at i:81436297 original size:13 final size:14
Alignment explanation
Indices: 81436276--81436329 Score: 69
Period size: 13 Copynumber: 4.1 Consensus size: 14
81436266 ATTTGTTTTG
*
81436276 TTTTGTTTATTT-T
1 TTTTATTTATTTCT
81436289 TTTTATTTATTTCT
1 TTTTATTTATTTCT
81436303 TTTTA-TTATTTCT
1 TTTTATTTATTTCT
*
81436316 TTTT-TTTATCTCT
1 TTTTATTTATTTCT
81436329 T
1 T
81436330 AAACTTATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
13 31 0.84
14 6 0.16
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (14 bp):
TTTTATTTATTTCT
Found at i:81439229 original size:47 final size:47
Alignment explanation
Indices: 81439160--81439614 Score: 308
Period size: 47 Copynumber: 9.6 Consensus size: 47
81439150 TTTGTGTGCT
*
81439160 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* * *
81439206 AGTGTAAGACCATGTCTGTGACATGGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* *
81439254 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-C-TCGA-GATGTACGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT-TATGA-G-A-GCC
* * * *
81439300 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTAC--GA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATTATGA-GAGCC
* **
81439344 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CATGTATAGAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT-TAT-GA-GAGCC
* * *
81439392 AGTGTAAGACCATGTCTGGGACATAGCATCGGCACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--AT-TATGAGAGCC
* * * * * *
81439442 AGTGTAAGACCATGTTTAGGACATGGCGTCGGCCTCGATT-TCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATTAT-GAGAGCC
*
81439491 AGTGGAAGACCATGTCTGGGACATGGCATC-G-AC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCC
*
81439538 AGTGTAAAACCATGTCTGGGACATGGCATC-G-AC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCC
81439585 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
81439615 AGTATTATAC
Statistics
Matches: 341, Mismatches: 40, Indels: 55
0.78 0.09 0.13
Matches are distributed among these distances:
43 3 0.01
44 15 0.04
45 18 0.05
46 66 0.19
47 103 0.30
48 62 0.18
49 31 0.09
50 35 0.10
51 4 0.01
52 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:81439304 original size:46 final size:45
Alignment explanation
Indices: 81439160--81439376 Score: 210
Period size: 46 Copynumber: 4.7 Consensus size: 45
81439150 TTTGTGTGCT
* * *
81439160 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAAGCC
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGA-GATGTAAGCC
* * * *
81439206 AGTGTAAGACCATGTCTGTGACATGGCATCGGCATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTG-GACAT-GCATCGGCCTCGAGATGTA-AGCC
*
81439254 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTACGCC
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATGTAAGCC
*
81439300 AGTGTAAGACATGTCTGAGACATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTG-GACATGCATCGGCCT-CGAGATGTAAGCC
81439344 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCT-GGACAT-GCATCGGC
81439377 ATGTATAGAG
Statistics
Matches: 146, Mismatches: 12, Indels: 25
0.80 0.07 0.14
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 70 0.48
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:81439609 original size:94 final size:93
Alignment explanation
Indices: 81439160--81439614 Score: 371
Period size: 94 Copynumber: 4.8 Consensus size: 93
81439150 TTTGTGTGCT
* * *
81439160 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAAAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATG--AGCCAGTGTAAGACCATGTC
* * *
81439222 TGTGACATGGCATCGGCATTGA-GACGAGAGCT
64 TGGGACATGGCATC-G-ACTGATGA-GAGAGCC
81439254 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGA-GATGTACGCCAGTGTAAGA-CATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATG-A-GCCAGTGTAAGACCATGTC
* * * * *
81439315 TGAGACAT-GCATCGGCT-ACGAGATGTGTC
64 TGGGACATGGCATCGACTGATGAGA-GAGCC
* * * * **
81439344 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GTATAGAGGTGTTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCG-AT-GATGAGCCAGTGTAAGACCATGTC
* * * *
81439408 TGGGACATAGCATCGGCACAGATATGTGAGAGCT
64 TGGGACATGGCATC-G-ACTG--ATGAGAGAGCC
* * * *
81439442 AGTGTAAGACCATGTTTAGGACATGGCGTCGGCCTCGATTTCGAT-AGTCAGTGGAAGACCATGT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA--T-GATGAGCCAGTGTAAGACCATGT
81439506 CTGGGACATGGCATCGACTTGATG-GATGAGCC
63 CTGGGACATGGCATCGAC-TGATGAGA-GAGCC
* * * *
81439538 AGTGTAAAACCATGTCTGGGACATGGCATC-GACTTGATGGATGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAT-GATGAGCCAGTGTAAGACCATGTCT
81439602 GGGACATGGCATC
65 GGGACATGGCATC
81439615 AGTATTATAC
Statistics
Matches: 294, Mismatches: 45, Indels: 44
0.77 0.12 0.11
Matches are distributed among these distances:
89 3 0.01
90 14 0.05
91 15 0.05
92 25 0.09
93 31 0.11
94 87 0.30
95 9 0.03
96 34 0.12
97 2 0.01
98 36 0.12
99 35 0.12
100 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGACTGATGAGAGAGCC
Found at i:81442367 original size:28 final size:27
Alignment explanation
Indices: 81442315--81442374 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
81442305 TCGATGTCTC
* * *
81442315 GCACACTAAGTGTCATACTCCATATCTT
1 GCACACCAAGTGCCATACTCAATAT-TT
*
81442343 GCACACCAAGTGCCATTCTCAATATTT
1 GCACACCAAGTGCCATACTCAATATTT
81442370 -CACAC
1 GCACAC
81442375 ACTAAATGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (27 bp):
GCACACCAAGTGCCATACTCAATATTT
Found at i:81442389 original size:2 final size:2
Alignment explanation
Indices: 81442384--81442417 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
81442374 CACTAAATGC
* *
81442384 CA CA CA CA CA CA CA CG CA TA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
81442418 TATATATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.47, G:0.03, T:0.03
Consensus pattern (2 bp):
CA
Found at i:81442406 original size:16 final size:16
Alignment explanation
Indices: 81442387--81442419 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81442377 TAAATGCCAC
*
81442387 ACACACACACACGCAT
1 ACACACACACACACAT
81442403 ACACACACACACACAT
1 ACACACACACACACAT
81442419 A
1 A
81442420 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.42, G:0.03, T:0.06
Consensus pattern (16 bp):
ACACACACACACACAT
Found at i:81442480 original size:40 final size:40
Alignment explanation
Indices: 81442434--81442518 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
81442424 TATATATATA
* *
81442434 TAGCCGAAGCTATCTT-AAATCACACACCAAGTGCCACATT
1 TAGCCGAAGCAAT-TTCAAACCACACACCAAGTGCCACATT
* * **
81442474 TAGCCGAAGCAATTTCAAACCGCACACTAAGTGCCATTTT
1 TAGCCGAAGCAATTTCAAACCACACACCAAGTGCCACATT
81442514 TAGCC
1 TAGCC
81442519 AATATGTCGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (40 bp):
TAGCCGAAGCAATTTCAAACCACACACCAAGTGCCACATT
Found at i:81445911 original size:2 final size:2
Alignment explanation
Indices: 81445899--81445930 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
81445889 AGTGACCAAA
81445899 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT A
81445931 AGAAATTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:81452264 original size:31 final size:31
Alignment explanation
Indices: 81452228--81452298 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
81452218 GAAAAGCTTG
*
81452228 AAGTTCAGGCCCCAATATGAAAATAATTA-CC
1 AAGTTCAGGCCCCAATATGAAAACAA-TAGCC
* * *
81452259 AAGTTCATGCCCTAATATGAAAACAATAGCT
1 AAGTTCAGGCCCCAATATGAAAACAATAGCC
81452290 AAGTTCAGG
1 AAGTTCAGG
81452299 GATGAACTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 32 0.94
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (31 bp):
AAGTTCAGGCCCCAATATGAAAACAATAGCC
Found at i:81452927 original size:29 final size:27
Alignment explanation
Indices: 81452863--81452927 Score: 67
Period size: 31 Copynumber: 2.3 Consensus size: 27
81452853 ATTTAATGTG
81452863 TATAATTACATAAAATCAAAATTCAAA
1 TATAATTACATAAAATCAAAATTCAAA
* * *
81452890 TATTAAATTACAAATTAAATCAAAATTTATA
1 TA-T-AATTAC--ATAAAATCAAAATTCAAA
81452921 TATAATT
1 TATAATT
81452928 TTTATATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.06
28 1 0.03
29 10 0.32
30 1 0.03
31 17 0.55
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (27 bp):
TATAATTACATAAAATCAAAATTCAAA
Found at i:81462081 original size:50 final size:50
Alignment explanation
Indices: 81461967--81462463 Score: 349
Period size: 50 Copynumber: 9.9 Consensus size: 50
81461957 ATTGTGAGAA
* * * * *** * *
81461967 CACATGTGTAGAACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* * * * *
81462019 CACGTGTGTAGTACTAAGTGCAGGTTTCTATGTGTACCAAATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * * * ** * * * *
81462069 TGCATGTGTAGTATTAAATGCAGGCTACTATGCATACCTGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * * * *
81462120 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTACGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * *
81462170 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGGCA-ACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAG-ATAGTT-AGGT
* * * * * *
81462221 CACGTGTGTAGTACTAAGTGCAAGATACTACGTGTATCATATGGTTAGG-
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
*
81462270 C-CATGTTTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGT
1 CACATG--TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
81462321 CGCATGTGTAATACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * *** *
81462371 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATTGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * *
81462420 CGCATGTGTAGTACCAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
81462464 CTTCGGTTAC
Statistics
Matches: 345, Mismatches: 88, Indels: 27
0.75 0.19 0.06
Matches are distributed among these distances:
48 3 0.01
49 41 0.12
50 189 0.55
51 72 0.21
52 40 0.12
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:81462142 original size:51 final size:51
Alignment explanation
Indices: 81462073--81462242 Score: 186
Period size: 51 Copynumber: 3.4 Consensus size: 51
81462063 TTAGGTTGCA
* * *
81462073 TGTGTAGTATTAAATGCAGGCTACTATGCATACCTGACAACTTCAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCAATCACG
* *** *
81462124 TGTGTAGTACTAAGTGCAGGCTACTA--CATGTATCAGA-TGGTT-ACGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCA--TACCAGACAACTTCA-ATCACG
* * *
81462174 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGGCAACTTCAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCAATCACG
81462225 TGTGTAGTACTAAGTGCA
1 TGTGTAGTACTAAGTGCA
81462243 AGATACTACG
Statistics
Matches: 96, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
49 3 0.03
50 37 0.39
51 54 0.56
52 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAACTTCAATCACG
Found at i:81462178 original size:101 final size:100
Alignment explanation
Indices: 81462017--81462400 Score: 439
Period size: 101 Copynumber: 3.8 Consensus size: 100
81462007 ATGGTTTTAG
* * * * * * ** *
81462017 ATCACGTGTGTAGTACTAAGTGCAGGTTTCTATGTGTACCAAATAGTTAGGTTGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTA
* * *
81462082 TTAAATGCAGGCTACTATGCATACCTGACAACTTCA
66 CTAAGTGCAGGCTACTATGCGTACC-GACAACTTCA
* *
81462118 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTACGTCACGTGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTA
*
81462183 CTAAGTGCAGGCTACTATGCGTACCCGGCAACTTCA
66 CTAAGTGCAGGCTACTATGCGTA-CCGACAACTTCA
* * * * * *
81462219 ATCACGTGTGTAGTACTAAGTGCAAGATACTACGTGTATCATATGGTTAGGCCATGTTTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTA
* * * *
81462284 CTAAGTGCAGGCTACTACGTGTACC-AAATAGTT-A
66 CTAAGTGCAGGCTACTATGCGTACCGACA-ACTTCA
* * * * *
81462318 GGTCGCATGTGTAATACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACGTGTGTAGT
1 -ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGT
*
81462383 ACTAAGTGCAAGCTACTA
65 ACTAAGTGCAGGCTACTA
81462401 CGTGTATTGG
Statistics
Matches: 240, Mismatches: 40, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
99 2 0.01
100 75 0.31
101 161 0.67
102 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (100 bp):
ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCGACAACTTCA
Found at i:81462366 original size:100 final size:100
Alignment explanation
Indices: 81462124--81462449 Score: 388
Period size: 100 Copynumber: 3.3 Consensus size: 100
81462114 TTCAATCACG
* *
81462124 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTACGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * * * * *
81462189 GCAGGCTACTATGCGTACCCGGCA-ACTTCA-ATCACG
66 GCAGGCTACTACGTGTA-CC-GAATAGTT-AGGTCGCA
* * * * * *
81462225 TGTGTAGTACTAAGTGCAAGATACTACGTGTATCATATGGTTAGGCCATGTTTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
*
81462290 GCAGGCTACTACGTGTACCAAATAGTTAGGTCGCA
66 GCAGGCTACTACGTGTACCGAATAGTTAGGTCGCA
* *
81462325 TGTGTAATACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* ** * *
81462390 GCAAGCTACTACGTGTATTGGATTGTT-GGTCGCA
66 GCAGGCTACTACGTGTACCGAATAGTTAGGTCGCA
*
81462424 TGTGTAGTACCAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
81462450 TGCGTACCAG
Statistics
Matches: 191, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
99 33 0.17
100 86 0.45
101 72 0.38
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCGAATAGTTAGGTCGCA
Found at i:81462682 original size:16 final size:15
Alignment explanation
Indices: 81462661--81462690 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81462651 GAATGGAGTA
81462661 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
81462677 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
81462691 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:81472380 original size:20 final size:19
Alignment explanation
Indices: 81472355--81472398 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
81472345 TCCCACTAGT
81472355 TTTGAACATTTTTATA-TATA
1 TTTGAA-ATTTTT-TACTATA
81472375 TTTG-AATTTTTTACTATA
1 TTTGAAATTTTTTACTATA
81472393 TTTGAA
1 TTTGAA
81472399 TTTGGGATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 2 0.09
20 4 0.18
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTGAAATTTTTTACTATA
Found at i:81472385 original size:18 final size:18
Alignment explanation
Indices: 81472362--81472401 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
81472352 AGTTTTGAAC
81472362 ATTTTTATA-TATATTTGA
1 ATTTTT-TACTATATTTGA
81472380 ATTTTTTACTATATTTGA
1 ATTTTTTACTATATTTGA
81472398 ATTT
1 ATTT
81472402 GGGATGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (18 bp):
ATTTTTTACTATATTTGA
Found at i:81474118 original size:41 final size:41
Alignment explanation
Indices: 81474073--81474253 Score: 197
Period size: 41 Copynumber: 4.4 Consensus size: 41
81474063 AGTGATATTT
* *
81474073 AGGCTT-TATGCCTAGTAGGCTTTATGCCGGTGAATTATATC
1 AGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTATATC
* *
81474114 AGGCTTATTGCCTAGCAGGCTTTATGCTGGTGTATTATTTC
1 AGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATC
* * *
81474155 AAGCTTATTGCCTAGTAGGCTTTATGCCGGTGTATTATTTC
1 AGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATC
* * * * * *
81474196 AGGCCTATTGCCTAACAGGCTCTGTGCCAGTGTATTGTA-C
1 AGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATC
81474236 TAGGCTT-TATGCCTAGCA
1 -AGGCTTAT-TGCCTAGCA
81474254 AATTTTATGT
Statistics
Matches: 119, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 2 0.02
41 116 0.97
42 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
AGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATC
Found at i:81474229 original size:82 final size:82
Alignment explanation
Indices: 81474081--81474231 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 82
81474071 TTAGGCTTTA
* * * **
81474081 TGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGCCTAGCAGGCTTTATGCTGGTG
1 TGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCTCTATGCCAGTG
81474146 TATTATTTCAAGCTTAT
66 TATTATTTCAAGCTTAT
* * *
81474163 TGCCTAGTAGGCTTTATGCCGGTGTATTATTTCAGGCCTATTGCCTAACAGGCTCTGTGCCAGTG
1 TGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCTCTATGCCAGTG
81474228 TATT
66 TATT
81474232 GTACTAGGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
82 61 1.00
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (82 bp):
TGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCTCTATGCCAGTG
TATTATTTCAAGCTTAT
Found at i:81474262 original size:82 final size:81
Alignment explanation
Indices: 81474072--81474251 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
81474062 CAGTGATATT
* * *
81474072 TAGGCTTTATGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGCCTAGCAGGCTTT
1 TAGGCTTTATGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCTCT
** *
81474137 ATGCTGGTGTATTATT
66 ATGCCAGTGTATTATC
* * *
81474153 TCAAGC-TTATTGCCTAGTAGGCTTTATGCCGGTGTATTATTTCAGGCCTATTGCCTAACAGGCT
1 T-AGGCTTTA-TGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCT
* *
81474217 CTGTGCCAGTGTATTGTAC
64 CTATGCCAGTGTATTAT-C
81474236 TAGGCTTTATGCCTAG
1 TAGGCTTTATGCCTAG
81474252 CAAATTTTAT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
81 4 0.05
82 75 0.90
83 4 0.05
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (81 bp):
TAGGCTTTATGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCTCT
ATGCCAGTGTATTATC
Found at i:81476285 original size:113 final size:113
Alignment explanation
Indices: 81476087--81476302 Score: 297
Period size: 113 Copynumber: 1.9 Consensus size: 113
81476077 TTCAGAATTT
* * * *
81476087 TTGGTTTAGCCAATTAATACATTTTATTCATTAAAGTTACCCATGTTTCACTATCCAATAGTTCC
1 TTGGTTTAGCCAATTAATACATTTTATCCATTAAAGATACCCATATTTCACTATCCAACAGTTCC
81476152 GACCTCTCTTCACTAAAAATTATTTATCTCATGATACATGACTCTAAA
66 GACCTCTCTTCACTAAAAATTATTTATCTCATGATACATGACTCTAAA
* * * * * ** *
81476200 TTGGTTTAGTCAATTAGTATATTTTATCCATTAAAGATACCCCTATTTCACTGTCTGACAGTTCT
1 TTGGTTTAGCCAATTAATACATTTTATCCATTAAAGATACCCATATTTCACTATCCAACAGTTCC
* * *
81476265 GACCTTTTTTCACTAAAAATTATTTATCTCATGGTACA
66 GACCTCTCTTCACTAAAAATTATTTATCTCATGATACA
81476303 GATCTCAGAT
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
113 88 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (113 bp):
TTGGTTTAGCCAATTAATACATTTTATCCATTAAAGATACCCATATTTCACTATCCAACAGTTCC
GACCTCTCTTCACTAAAAATTATTTATCTCATGATACATGACTCTAAA
Found at i:81476973 original size:50 final size:50
Alignment explanation
Indices: 81476860--81477342 Score: 454
Period size: 50 Copynumber: 9.6 Consensus size: 50
81476850 TTGGTATTCA
* * * *
81476860 TAGTAGCCTGGACTTAGTACTACACATGCGACCTATCAATTTG-TACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * *
81476909 TAGTAGCCTGCACTTAGTACTACAGACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * ** * * *
81476959 TAGTAGCCTTCACTTAGTACTACACACGTGATCGAAGTTAA-C-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGA-TACACG
* * *
81477010 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * *
81477060 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * ** * * *
81477110 TAGTAGCCTGCATTTAGGACTACACACGTGATCGAAGTTAA-C-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGA-TACACG
** * *
81477161 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * *
81477211 TAGTAGCCAGCACTTAGTACTACACATGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * * * * *
81477261 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--ATCAATCTGATACACG
*
81477313 TAGTAGCCTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
81477343 TTCTCACAAC
Statistics
Matches: 350, Mismatches: 71, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
49 42 0.12
50 195 0.56
51 70 0.20
52 43 0.12
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
Found at i:81477033 original size:101 final size:100
Alignment explanation
Indices: 81476860--81477291 Score: 374
Period size: 101 Copynumber: 4.3 Consensus size: 100
81476850 TTGGTATTCA
* * * * *** **
81476860 TAGTAGCCTGGACTTAGTACTACACATGCG-ACCTATCAATTTGTACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACCAATCAACGAGTACACATAGTAGCCTGCACTT
* *
81476924 AGTACTACAGACGTGACTTATCCATCTGATACACG
66 AGTACTACACACGTGACCTATCCATCTGATACACG
* * * * *
81476959 TAGTAGCCTTCACTTAGTACTACACACGTGATCGAAGTTAACGAGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACCAA-TCAACGAGTACACATAGTAGCCTGCACT
* * * * *
81477024 TAGTACTACACATGCGACCTATCAATCTGGTACATG
65 TAGTACTACACACGTGACCTATCCATCTGATACACG
* * * * * * *
81477060 TAGTAGCCTGCACTTAGTACTACACATGTG-ACCTAACCATCTAATACACGTAGTAGCCTGCATT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACC-AATCAACGAGTACACATAGTAGCCTGCACT
* ** * * * *
81477124 TAGGACTACACACGTGATCGAAGT-TAAC-GAGTACGCA
65 TAGTACTACACACGTGA-CCTA-TCCATCTGA-TACACG
* * *
81477161 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCTATCAATCTG-GTACACTTAGTAGCCAGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTG-AACCAATCAA-C-GAGTACACATAGTAGCCTGCA
* * *
81477223 CTTAGTACTACACATGTGACCTAACCATCTAATACACG
63 CTTAGTACTACACACGTGACCTATCCATCTGATACACG
81477261 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
81477292 CTTAAAACTA
Statistics
Matches: 257, Mismatches: 62, Indels: 26
0.74 0.18 0.08
Matches are distributed among these distances:
99 28 0.11
100 75 0.29
101 151 0.59
102 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACCAATCAACGAGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGACCTATCCATCTGATACACG
Found at i:81477114 original size:151 final size:151
Alignment explanation
Indices: 81476858--81477291 Score: 737
Period size: 151 Copynumber: 2.9 Consensus size: 151
81476848 CTTTGGTATT
* *
81476858 CATAGTAGCCTGGACTTAGTACTACACATGCGACCTATCAAT-TTGTACATGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCAC
* * * * * *
81476922 TTAGTACTACAGACGTGACTTATCCATCTGATACACGTAGTAGCCTTCACTTAGTACTACACACG
66 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
81476987 TGATCGAAGTTAACGAGTACG
131 TGATCGAAGTTAACGAGTACG
81477008 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCAC
* *
81477073 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCATTTAGGACTACACACG
66 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
81477138 TGATCGAAGTTAACGAGTACG
131 TGATCGAAGTTAACGAGTACG
* *
81477159 CATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACT-TAGTAGCCAGCA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACA-TGTAGTAGCCTGCA
81477223 CTTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACAC
65 CTTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACAC
81477288 GTGA
130 GTGA
81477292 CTTAAAACTA
Statistics
Matches: 268, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
150 41 0.15
151 226 0.84
152 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCAC
TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
TGATCGAAGTTAACGAGTACG
Found at i:81480271 original size:15 final size:15
Alignment explanation
Indices: 81480242--81480284 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
81480232 TGTTATTTTC
*
81480242 TTTTATTT-TCTTAG
1 TTTTATTTAACTTAG
81480256 TTTTATTTAACTTAG
1 TTTTATTTAACTTAG
*
81480271 TTGTATTTAACTTA
1 TTTTATTTAACTTA
81480285 TACATGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (15 bp):
TTTTATTTAACTTAG
Found at i:81484154 original size:17 final size:17
Alignment explanation
Indices: 81484134--81484171 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
81484124 AATTGTCTAT
* *
81484134 TTTTCTTTATTTATTTC
1 TTTTCGTTATTTATTTA
81484151 TTTTCGTTATTTATTTA
1 TTTTCGTTATTTATTTA
81484168 TTTT
1 TTTT
81484172 TATTTCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCGTTATTTATTTA
Found at i:81488915 original size:36 final size:36
Alignment explanation
Indices: 81488875--81488944 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
81488865 GGGTAGGCTA
81488875 ACACACGGGCACGGCATAGACACGTGCCCGTGTGCC
1 ACACACGGGCACGGCATAGACACGTGCCCGTGTGCC
81488911 ACACACGGGCACGGCATAGACACGTGCCCGTGTG
1 ACACACGGGCACGGCATAGACACGTGCCCGTGTG
81488945 GACAATATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.34, G:0.31, T:0.11
Consensus pattern (36 bp):
ACACACGGGCACGGCATAGACACGTGCCCGTGTGCC
Found at i:81489733 original size:46 final size:47
Alignment explanation
Indices: 81489628--81489846 Score: 182
Period size: 46 Copynumber: 4.7 Consensus size: 47
81489618 TGGGTAAGGT
* * *
81489628 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CATCTTGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTCG-AG
* * * *
81489676 TCCAATTCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGAG
* * * *
81489722 GCCGATGCATGTCCGAGACATGTCTTACATTGGCTC--CTATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAC-ATCTCGAG
* * * *
81489768 GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACAT-CTCGAG
*
81489816 GTCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
81489847 AGCACACAAA
Statistics
Matches: 138, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
45 3 0.02
46 69 0.50
47 39 0.28
48 25 0.18
49 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGAG
Found at i:81497215 original size:47 final size:48
Alignment explanation
Indices: 81497146--81497374 Score: 258
Period size: 46 Copynumber: 4.9 Consensus size: 48
81497136 TGGGTAAGGT
* *
81497146 GTCGATGCCATGTCCCAGACATGGTTTTACACTGGTTCAT-ATCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATCTCGAA
* * *
81497193 GTCGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
* * * *
81497241 GCCGATG-CTTGTCCCAGACAT-GTCTTAAACTGGCT-TACATCTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CATCTCGAA
* * *
81497287 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
*
81497332 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT
81497375 AATGTGGCCG
Statistics
Matches: 157, Mismatches: 18, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
45 2 0.01
46 65 0.41
47 65 0.41
48 25 0.16
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
Found at i:81497284 original size:46 final size:47
Alignment explanation
Indices: 81497148--81497416 Score: 250
Period size: 46 Copynumber: 5.7 Consensus size: 47
81497138 GGTAAGGTGT
* * * *
81497148 CGATGCCATGTCCCAGACATGGTTTTACACTGG-T-TCATATC-TCAAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGT-AGGC
* * *
81497195 CGATGCCATGTCCTAGACATGGTCTTACACTGACTATCATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGTAGGC
* *
81497243 CGATGCTTGTCCCAGACATGTCTTAAACTGGCT-TACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGTAGGC
* * * *
81497289 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC-AATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTAGGC
*
81497335 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-GGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGTAGGC
* *
81497383 CGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
81497417 GCAAACAAAT
Statistics
Matches: 190, Mismatches: 21, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.01
46 78 0.41
47 70 0.37
48 31 0.16
49 8 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTAGGC
Found at i:81497387 original size:94 final size:91
Alignment explanation
Indices: 81497145--81497416 Score: 300
Period size: 94 Copynumber: 2.9 Consensus size: 91
81497135 ATGGGTAAGG
* * * * *
81497145 TGTCGATGCCATGTCCCAGACATGGTTTTACACTGG-TTCATATCTCAAGTCGATGCCATGTCCT
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATATGT--GGCCGATG-CATGTCCC
* *
81497209 AGACATGGTCTTACACT-GACTATCATCTCG
63 AGACAT-GTCTTACACTAG-CTCTCATCTCA
* * * * *
81497239 TAGCCGATG-CTTGTCCCAGACAT-GTCTTAAACTGGCTTACATCTCGAGGCCGATGCATGTCCC
1 T-GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATAT-GTGGCCGATGCATGTCCC
81497302 AGACATGTCTTACACTAGCTCTCATCTCAA
63 AGACATGTCTTACACTAGCTCTCATCTC-A
81497332 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCAT-ATGTGGCCGATGCATGTCCCA
*
81497397 AACATGTCTTACACTAGCTC
64 GACATGTCTTACACTAGCTC
81497417 GCAAACAAAT
Statistics
Matches: 150, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
92 25 0.17
93 38 0.25
94 75 0.50
95 12 0.08
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (91 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATATGTGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCTCTCATCTCA
Found at i:81497406 original size:140 final size:141
Alignment explanation
Indices: 81497148--81497407 Score: 375
Period size: 140 Copynumber: 1.9 Consensus size: 141
81497138 GGTAAGGTGT
* * * *
81497148 CGATGCCATGTCCCAGACATGGTTTTACACTGGTTCATATCTCAAGTCGATGCCATGTCCTAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
* * *
81497213 ATGGTCTTACACTGACTATCATCTCGTAGCCGATGCTTGTCCCAGACATGTCTTAAACTGGCTTA
66 ATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTAAACTGGCTTA
81497278 CATCTCGAGGC
131 CATCTCGAGGC
81497289 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCATCTCAATGTCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GTCGATGCCATGTCCCAG
* * *
81497351 ACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAAACATGTCTTA
64 ACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAAACATGTCTTA
81497408 CACTAGCTCG
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 80 0.75
141 6 0.06
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTAAACTGGCTTA
CATCTCGAGGC
Found at i:81501755 original size:23 final size:24
Alignment explanation
Indices: 81501728--81501774 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
81501718 ATTATCATAA
* *
81501728 CATTCCAAACTTGC-CATAAGATT
1 CATTCAAAACGTGCACATAAGATT
81501751 CATTCAAAACGTGCATCATAAGAT
1 CATTCAAAACGTGCA-CATAAGAT
81501775 AACCAAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
25 8 0.40
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (24 bp):
CATTCAAAACGTGCACATAAGATT
Found at i:81509636 original size:16 final size:15
Alignment explanation
Indices: 81509611--81509640 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81509601 ACCTTAATTT
81509611 TTTCCATTTTTTTTC
1 TTTCCATTTTTTTTC
81509626 TTTCTCATTTTTTTT
1 TTTC-CATTTTTTTT
81509641 TGTTTCTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTCCATTTTTTTTC
Found at i:81517562 original size:73 final size:73
Alignment explanation
Indices: 81517443--81517591 Score: 298
Period size: 73 Copynumber: 2.0 Consensus size: 73
81517433 ACTTGACCAT
81517443 CACAATCCAACTCTCACCGCCCTCTTTTCCAAATCTATTTCATTGCCTCACCCATCCACCGACTT
1 CACAATCCAACTCTCACCGCCCTCTTTTCCAAATCTATTTCATTGCCTCACCCATCCACCGACTT
81517508 AATTTCCA
66 AATTTCCA
81517516 CACAATCCAACTCTCACCGCCCTCTTTTCCAAATCTATTTCATTGCCTCACCCATCCACCGACTT
1 CACAATCCAACTCTCACCGCCCTCTTTTCCAAATCTATTTCATTGCCTCACCCATCCACCGACTT
81517581 AATTTCCA
66 AATTTCCA
81517589 CAC
1 CAC
81517592 TAATAAAAAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.25, C:0.42, G:0.04, T:0.30
Consensus pattern (73 bp):
CACAATCCAACTCTCACCGCCCTCTTTTCCAAATCTATTTCATTGCCTCACCCATCCACCGACTT
AATTTCCA
Found at i:81521331 original size:40 final size:40
Alignment explanation
Indices: 81521276--81521360 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
81521266 AGTTGAATAA
*
81521276 ATCGAGTATTAGTGGCGTTTTTGGAA-AAA-CGCCGCTATAG
1 ATCGAGAATTAGTGGCGTTTTT--AAGAAAGCGCCGCTATAG
81521316 ATCGAGAATTAGTGGCGTTTTTAAGAAAGCGCCGCTATAG
1 ATCGAGAATTAGTGGCGTTTTTAAGAAAGCGCCGCTATAG
*
81521356 GTCGA
1 ATCGA
81521361 CCTATAGCGG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
38 2 0.05
39 3 0.07
40 36 0.88
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (40 bp):
ATCGAGAATTAGTGGCGTTTTTAAGAAAGCGCCGCTATAG
Found at i:81521611 original size:155 final size:154
Alignment explanation
Indices: 81521300--81521638 Score: 471
Period size: 155 Copynumber: 2.2 Consensus size: 154
81521290 GCGTTTTTGG
* * * * * *
81521300 AAAAACGCCGCTATAGATCGAGAATTAGTGGCGTTTTTAAGAAAGCGCCGCTATAGGTCGACCTA
1 AAAAACGCCGCTATAGATTGAGTATTAGCGGCATTTTTAACAAAGCGCCGCTATAAGTCGACCTA
*
81521365 TAGCGGCGTTTTTATAAAAACGCCACTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACTT
66 TAGCGACGTTTTTATAAAAACGCCACTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACTT
* *
81521430 CAGTGGTAATAGCGGCGCTTTATC
131 CAGTGGCAATAGCGGCGCTTCATC
* *
81521454 AAAAACGCCGCTATAAGTTTGAGTATTAGCGGCATTTTTCACAAAGCGCCGCTATAAGTCGACCT
1 AAAAACGCCGCTAT-AGATTGAGTATTAGCGGCATTTTTAACAAAGCGCCGCTATAAGTCGACCT
* * * * * * *
81521519 ATAGCGATGTTTTTATACAAACGCCGCTAAAAGATTAAGTCGAACGGCGTCGTTTATTTTGAGCT
65 ATAGCGACGTTTTTATAAAAACGCCACTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACT
*
81521584 TCAGTGGCAATAGCGGCGCTTCCTC
130 TCAGTGGCAATAGCGGCGCTTCATC
** *
81521609 AAAAACGTTGCTATAGATTCAGTATTAGCG
1 AAAAACGCCGCTATAGATTGAGTATTAGCG
81521639 CCGCTTTTTA
Statistics
Matches: 161, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
154 28 0.17
155 133 0.83
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (154 bp):
AAAAACGCCGCTATAGATTGAGTATTAGCGGCATTTTTAACAAAGCGCCGCTATAAGTCGACCTA
TAGCGACGTTTTTATAAAAACGCCACTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACTT
CAGTGGCAATAGCGGCGCTTCATC
Found at i:81522326 original size:28 final size:29
Alignment explanation
Indices: 81522274--81522328 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
81522264 CTTAACCCCT
* *
81522274 AAACCCATAAACTATAGACCTTAAATTTG
1 AAACCCATAAACTATAAACCCTAAATTTG
81522303 AAACCC-TAAACTATAAACCCTAAATT
1 AAACCCATAAACTATAAACCCTAAATT
81522329 AATGACACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (29 bp):
AAACCCATAAACTATAAACCCTAAATTTG
Found at i:81525051 original size:11 final size:11
Alignment explanation
Indices: 81525035--81525063 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
81525025 CGGCTATGAA
81525035 GAACAAAGAAT
1 GAACAAAGAAT
81525046 GAACAAAGAAT
1 GAACAAAGAAT
81525057 GAACAAA
1 GAACAAA
81525064 AACCTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.66, C:0.10, G:0.17, T:0.07
Consensus pattern (11 bp):
GAACAAAGAAT
Found at i:81525225 original size:32 final size:32
Alignment explanation
Indices: 81525188--81525252 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
81525178 AATGCTTACC
81525188 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
81525220 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
81525252 A
1 A
81525253 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:81525777 original size:44 final size:44
Alignment explanation
Indices: 81525696--81525780 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
81525686 TATTGATTGT
*
81525696 GGATTTAGGGATTATGGTTTATGGTTCAAGAGCTAAAGGTTTAG
1 GGATTTAGGGATTATGGTTTAGGGTTCAAGAGCTAAAGGTTTAG
* * **
81525740 GGATTTGGGGTTTATGGTTTAGGGGTT-AAGATTTAAAGGTT
1 GGATTTAGGGATTATGGTTTA-GGGTTCAAGAGCTAAAGGTT
81525781 AAGAGTCTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 31 0.89
45 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.34, T:0.39
Consensus pattern (44 bp):
GGATTTAGGGATTATGGTTTAGGGTTCAAGAGCTAAAGGTTTAG
Found at i:81525894 original size:29 final size:28
Alignment explanation
Indices: 81525828--81525894 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
81525818 AAGGGGATAT
*
81525828 GGTTTAGGGTTTAGTGTTTAAAGTTTAG
1 GGTTTAGGGTTTAGTGTTTAAAGTTGAG
* *
81525856 GGATTAAGGGTTTA-TGTTTTAAGGTTGATG
1 GG-TTTAGGGTTTAGTG-TTTAAAGTTGA-G
81525886 GGTTTAGGG
1 GGTTTAGGG
81525895 ATTAAGGGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
28 4 0.12
29 25 0.78
30 3 0.09
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (28 bp):
GGTTTAGGGTTTAGTGTTTAAAGTTGAG
Found at i:81525969 original size:80 final size:80
Alignment explanation
Indices: 81525811--81525969 Score: 221
Period size: 80 Copynumber: 2.0 Consensus size: 80
81525801 TTAAGAGTTA
* * * * *
81525811 AGGGGTTAAGGGGATATGGTTTAGGGTTTAGTGTTTAAAGTTTAGGGATTAAGGGTTTATGTTTT
1 AGGGATTAAGGGGACATGGTTTAGGGTTTAATGTTTAAAGTTTAGGGATTAAGGGTTAATGGTTT
*
81525876 AAGGTTGATGGGTTT
66 AAGGTTGAGGGGTTT
* *
81525891 AGGGATTAAGGGGACATGGTTTAGGGTTTAATGTTTAAATTTTGGGGATTAAGGGTTAATGGTTT
1 AGGGATTAAGGGGACATGGTTTAGGGTTTAATGTTTAAAGTTTAGGGATTAAGGGTTAATGGTTT
*
81525956 AGGGGTT-AGGGGTT
66 A-AGGTTGAGGGGTT
81525970 AAAGGGACAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 65 0.94
81 4 0.06
ACGTcount: A:0.23, C:0.01, G:0.37, T:0.39
Consensus pattern (80 bp):
AGGGATTAAGGGGACATGGTTTAGGGTTTAATGTTTAAAGTTTAGGGATTAAGGGTTAATGGTTT
AAGGTTGAGGGGTTT
Found at i:81526162 original size:16 final size:16
Alignment explanation
Indices: 81526109--81526162 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
81526099 ATATTAAATA
81526109 ATTTCAAATTTT-AATG
1 ATTTCAAATTTTCAA-G
81526125 ATTTCAAATTTTC-A-
1 ATTTCAAATTTTCAAG
81526139 A--T--AATTTTCAAG
1 ATTTCAAATTTTCAAG
81526151 ATTTCAAATTTT
1 ATTTCAAATTTT
81526163 ATGTAGTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
10 7 0.23
11 1 0.03
12 2 0.06
14 2 0.06
16 19 0.61
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (16 bp):
ATTTCAAATTTTCAAG
Found at i:81526204 original size:22 final size:22
Alignment explanation
Indices: 81526176--81526221 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
81526166 TAGTTCTTTT
*
81526176 AAATA-TTACTTAAATTTAAAAA
1 AAATATTTACTTAAA-TGAAAAA
*
81526198 AAATATTTATTTAAATGAAAAA
1 AAATATTTACTTAAATGAAAAA
81526220 AA
1 AA
81526222 TTAAAATACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
AAATATTTACTTAAATGAAAAA
Found at i:81526219 original size:23 final size:22
Alignment explanation
Indices: 81526176--81526221 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
81526166 TAGTTCTTTT
**
81526176 AAATATTACTTAAATTTAAAAA
1 AAATATTACTTAAATGAAAAAA
*
81526198 AAATATTTATTTAAATGAAAAAA
1 AAATA-TTACTTAAATGAAAAAA
81526221 A
1 A
81526222 TTAAAATACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
AAATATTACTTAAATGAAAAAA
Found at i:81526308 original size:17 final size:16
Alignment explanation
Indices: 81526272--81526305 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
81526262 CTATATAACT
*
81526272 TATTTTTTTTAATTTA
1 TATTGTTTTTAATTTA
81526288 TATTGTTTTT-ATTTA
1 TATTGTTTTTAATTTA
81526303 TAT
1 TAT
81526306 ATTAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TATTGTTTTTAATTTA
Found at i:81529049 original size:64 final size:64
Alignment explanation
Indices: 81528976--81529109 Score: 250
Period size: 64 Copynumber: 2.1 Consensus size: 64
81528966 TAATATTTCT
* *
81528976 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
81529040 ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
81529104 ATATTT
1 ATATTT
81529110 AATAAAATAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.39, C:0.12, G:0.03, T:0.46
Consensus pattern (64 bp):
ATATTTCTATCACAATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
Found at i:81529184 original size:24 final size:24
Alignment explanation
Indices: 81529157--81529225 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 24
81529147 ATTATTATTG
* *
81529157 AAATATTCTCGTCCGTTTTATCAA
1 AAATATTATAGTCCGTTTTATCAA
** *
81529181 AAATATTATTTTCCGTTTTATCAC
1 AAATATTATAGTCCGTTTTATCAA
81529205 AAATATTATAGTCCGTTTTAT
1 AAATATTATAGTCCGTTTTAT
81529226 TATTTAAGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATAGTCCGTTTTATCAA
Found at i:81529445 original size:15 final size:15
Alignment explanation
Indices: 81529401--81529456 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
81529391 AATGACATGT
81529401 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
81529417 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
81529430 ATATTATTTAATTAA
1 ATATTATTTAATTAA
81529445 ATATTATTTAAT
1 ATATTATTTAAT
81529457 CCCGCGACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:81529579 original size:9 final size:9
Alignment explanation
Indices: 81529567--81529917 Score: 218
Period size: 9 Copynumber: 38.9 Consensus size: 9
81529557 ATATCATATT
81529567 TTACATAAC
1 TTACATAAC
*
81529576 TTACAGAAC
1 TTACATAAC
*
81529585 GTACATAAC
1 TTACATAAC
*
81529594 TTATATAAC
1 TTACATAAC
81529603 TTACATAAC
1 TTACATAAC
*
81529612 TTATATAAC
1 TTACATAAC
*
81529621 TTATATAAC
1 TTACATAAC
*
81529630 ATACATAAC
1 TTACATAAC
* *
81529639 TTATATGAC
1 TTACATAAC
*
81529648 TTAGATAA-
1 TTACATAAC
* *
81529656 ATATATAAC
1 TTACATAAC
81529665 TTACATAAC
1 TTACATAAC
81529674 TTACATAAC
1 TTACATAAC
*
81529683 TTATATAAC
1 TTACATAAC
81529692 TTACAT-A-
1 TTACATAAC
*
81529699 TATATATAAC
1 T-TACATAAC
81529709 TTACATAA-
1 TTACATAAC
* * *
81529717 ATATATATC
1 TTACATAAC
81529726 ATGT-CATAAC
1 -T-TACATAAC
81529736 TTACATAAC
1 TTACATAAC
*
81529745 TTACACAATAC
1 TTACA-TA-AC
* *
81529756 TTAAATATATTT
1 TTACATA-A--C
*
81529768 TATATCATAAT
1 T-TA-CATAAC
81529779 TTACATAAC
1 TTACATAAC
*
81529788 TTACAAAAC
1 TTACATAAC
*
81529797 TTACTTAAC
1 TTACATAAC
*
81529806 TTATATAAC
1 TTACATAAC
*
81529815 TTAGATAA-
1 TTACATAAC
* *
81529823 ATATATAAC
1 TTACATAAC
81529832 TT--ATAAC
1 TTACATAAC
81529839 TTACATAAC
1 TTACATAAC
*
81529848 TTATATAAC
1 TTACATAAC
*
81529857 TTAGATAA-
1 TTACATAAC
* * *
81529865 ATATATAAT
1 TTACATAAC
81529874 TTACATAA-
1 TTACATAAC
* * *
81529882 ATATATATC
1 TTACATAAC
*
81529891 ATATCATAAC
1 TTA-CATAAC
81529901 TTACATAAC
1 TTACATAAC
81529910 TTACATAA
1 TTACATAA
81529918 TACTTAAGTA
Statistics
Matches: 267, Mismatches: 55, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
7 8 0.03
8 34 0.13
9 192 0.72
10 17 0.06
11 9 0.03
12 1 0.00
13 3 0.01
14 3 0.01
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:81529673 original size:62 final size:61
Alignment explanation
Indices: 81529586--81529917 Score: 230
Period size: 62 Copynumber: 5.4 Consensus size: 61
81529576 TTACAGAACG
* * *
81529586 TACATAACTTATATAACTTACATAACTTATATAACTTATATAACATACATA-ACTTATATGACT
1 TACATAA-ATATATAACTTACATAACTTACATAACTTATATAACATACATATA--TATATAACT
* *
81529649 TAGATAAATATATAACTTACATAACTTACATAACTTATATAACTTACATATATATATAACT
1 TACATAAATATATAACTTACATAACTTACATAACTTATATAACATACATATATATATAACT
* * * * * **
81529710 TACATAAATATATATCATGT-CATAACTTACATAACTTACA-CA-ATACTTAAATATAT-TTT
1 TACATAAATATATAAC-T-TACATAACTTACATAACTTATATAACATACATATATATATAACT
* * * * * * *
81529769 ATATCATAATTTACATAACTTACAAAACTTACTTAACTTATATAACTTAGATAAATATATAACT
1 -TA-CATAA-ATATATAACTTACATAACTTACATAACTTATATAACATACATATATATATAACT
* * * * * ** * * *
81529833 T--ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAATATATATCA
1 TACATAA-ATATATAACTTACATAACTTACATAACTTATATAACATACATATATATATAACT
* *
81529892 TATCATAACTTACATAACTTACATAA
1 TA-CATAA-ATATATAACTTACATAA
81529918 TACTTAAGTA
Statistics
Matches: 219, Mismatches: 37, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
59 24 0.11
60 40 0.18
61 46 0.21
62 88 0.40
63 20 0.09
64 1 0.00
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (61 bp):
TACATAAATATATAACTTACATAACTTACATAACTTATATAACATACATATATATATAACT
Found at i:81529706 original size:17 final size:16
Alignment explanation
Indices: 81529669--81529723 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 16
81529659 TATAACTTAC
81529669 ATAACTTACATAACTTAT
1 ATAACTTACATAA--TAT
81529687 ATAACTTACATATATAT
1 ATAACTTACATA-ATAT
81529704 ATAACTTACATAAATAT
1 ATAACTTACAT-AATAT
81529721 ATA
1 ATA
81529724 TCATGTCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
17 21 0.60
18 13 0.37
19 1 0.03
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (16 bp):
ATAACTTACATAATAT
Found at i:81529735 original size:44 final size:43
Alignment explanation
Indices: 81529571--81529743 Score: 204
Period size: 44 Copynumber: 3.9 Consensus size: 43
81529561 CATATTTTAC
* *
81529571 ATAACTTACAGAACGTACATAACTTATATAACTTACATAACTTAT
1 ATAACTTACATAACATACATAACTTATATAACTTACATAA--TAT
* * *
81529616 ATAACTTATATAACATACATAACTTATATGACTTAGATAAATAT
1 ATAACTTACATAACATACATAACTTATATAACTTACAT-AATAT
*
81529660 ATAACTTACATAACTTACATAACTTATATAACTTACATATATAT
1 ATAACTTACATAACATACATAACTTATATAACTTACATA-ATAT
* * * *
81529704 ATAACTTACATAA-ATATATATCATGTCATAACTTACATAA
1 ATAACTTACATAACATACATAACTTAT-ATAACTTACATAA
81529744 CTTACACAAT
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
43 10 0.09
44 66 0.59
45 33 0.30
46 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (43 bp):
ATAACTTACATAACATACATAACTTATATAACTTACATAATAT
Found at i:81529776 original size:43 final size:41
Alignment explanation
Indices: 81529714--81529953 Score: 161
Period size: 43 Copynumber: 5.8 Consensus size: 41
81529704 ATAACTTACA
*
81529714 TAAATATATATCATGTCATAACTTACATAACTTACACAATACT
1 TAAATATATATCATATCATAACTTACATAACTTACA-AA-ACT
* * *
81529757 TAAATATATTTTATATCATAATTTACATAACTTACAAAACT
1 TAAATATATATCATATCATAACTTACATAACTTACAAAACT
* * * * * *
81529798 T-ACT-TA-A-CTTAT-ATAACTTAGATAA-ATATATAACT
1 TAAATATATATCATATCATAACTTACATAACTTACAAAACT
* * * * * * * *
81529833 TATAACTTACATAACTTAT-ATAACTTAGATAAATATATAATTTACA
1 TA-AA--TATATATCATATCATAACTTACATAACT-TACAA--AACT
81529879 TAAATATATATCATATCATAACTTACATAACTTACATAATACT
1 TAAATATATATCATATCATAACTTACATAACTTACA-AA-ACT
* *
81529922 TAAGTATATATCATATCATATCTTACATAACT
1 TAAATATATATCATATCATAACTTACATAACT
81529954 AGCTTACGAA
Statistics
Matches: 154, Mismatches: 29, Indels: 28
0.73 0.14 0.13
Matches are distributed among these distances:
35 8 0.05
36 11 0.07
37 4 0.03
39 3 0.02
40 3 0.02
41 5 0.03
42 20 0.13
43 76 0.49
44 18 0.12
45 2 0.01
46 4 0.03
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (41 bp):
TAAATATATATCATATCATAACTTACATAACTTACAAAACT
Found at i:81529829 original size:17 final size:17
Alignment explanation
Indices: 81529807--81529888 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 17
81529797 TTACTTAACT
81529807 TATATAACTTAGATAAA
1 TATATAACTTAGATAAA
*
81529824 TATATAACTTATAACTTACATAA
1 TATATAACTTA-GA--T--A-AA
81529847 CTTATATAACTTAGATAAA
1 --TATATAACTTAGATAAA
* *
81529866 TATATAATTTACATAAA
1 TATATAACTTAGATAAA
81529883 TATATA
1 TATATA
81529889 TCATATCATA
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
17 32 0.60
18 1 0.02
19 2 0.04
20 2 0.04
22 2 0.04
23 2 0.04
24 1 0.02
25 11 0.21
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (17 bp):
TATATAACTTAGATAAA
Found at i:81529841 original size:24 final size:25
Alignment explanation
Indices: 81529783--81529859 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 25
81529773 CATAATTTAC
* *
81529783 ATAACTTACAAAACTTACT-TAACTTAT
1 ATAACTTACATAACATA-TATAAC-T-T
*
81529810 ATAACTTAGATAA-ATATATAACTT
1 ATAACTTACATAACATATATAACTT
*
81529834 ATAACTTACATAACTTATATAACTT
1 ATAACTTACATAACATATATAACTT
81529859 A
1 A
81529860 GATAAATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 13 0.30
25 13 0.30
26 6 0.14
27 11 0.26
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (25 bp):
ATAACTTACATAACATATATAACTT
Found at i:81529886 original size:165 final size:166
Alignment explanation
Indices: 81529541--81529982 Score: 548
Period size: 165 Copynumber: 2.6 Consensus size: 166
81529531 ACTTACATAA
* * ** * * * * *
81529541 TACATAAATATATTTGATATCATATTTTACATAACTTACAGAACGTACATAACTTATATAACTTA
1 TACATAAATATATATCATATCATAACTTACATAACTTACACAA--TACTTAA-ATATATATCATA
* * * * * * *
81529606 -CATAACTTATATAACTTATATAACATACATAACTTATATGACTTAGATAAATATATAACTTACA
63 TCATAATTTACATAACTTACAAAACTTACTTAACTTATATAACTTAGATAAATATATAACTTA-A
*
81529670 TAACTTACATAACTTATATAACTTACATATATATATAACT
127 TAACTTACATAACTTATATAACTTACATAAATATATAACT
* * *
81529710 TACATAAATATATATCATGTCATAACTTACATAACTTACACAATACTTAAATATATTTTATATCA
1 TACATAAATATATATCATATCATAACTTACATAACTTACACAATACTTAAATATATATCATATCA
81529775 TAATTTACATAACTTACAAAACTTACTTAACTTATATAACTTAGATAAATATATAACTT-ATAAC
66 TAATTTACATAACTTACAAAACTTACTTAACTTATATAACTTAGATAAATATATAACTTAATAAC
* *
81529839 TTACATAACTTATATAACTTAGATAAATATATAATT
131 TTACATAACTTATATAACTTACATAAATATATAACT
* *
81529875 TACATAAATATATATCATATCATAACTTACATAACTTACATAATACTTAAGTATATATCATATCA
1 TACATAAATATATATCATATCATAACTTACATAACTTACACAATACTTAAATATATATCATATCA
* *
81529940 T-ATCTTACATAACTAGCTTACGAAACTTACTTAACTTACATAA
66 TAAT-TTACAT-A--A-CTTACAAAACTTACTTAACTTATATAA
81529983 TACATAAATC
Statistics
Matches: 238, Mismatches: 29, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
164 2 0.01
165 105 0.44
166 8 0.03
167 60 0.25
168 1 0.00
169 62 0.26
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (166 bp):
TACATAAATATATATCATATCATAACTTACATAACTTACACAATACTTAAATATATATCATATCA
TAATTTACATAACTTACAAAACTTACTTAACTTATATAACTTAGATAAATATATAACTTAATAAC
TTACATAACTTATATAACTTACATAAATATATAACT
Done.