Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 245 of 332
Found at i:81535090 original size:13 final size:14
Alignment explanation
Indices: 81535074--81535102 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81535064 TTCTAAATAT
81535074 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
81535087 TTATAATTGTTTAA
1 TTATAATTGTTTAA
81535101 TT
1 TT
81535103 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:81535559 original size:21 final size:21
Alignment explanation
Indices: 81535517--81535560 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
81535507 ACTTAGAGCG
*
81535517 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGAGAGGCAGGCA
*
81535538 GAGGCAGCAGCGATGGCA-GCA
1 GAGGCAGCAGAGA-GGCAGGCA
81535559 GA
1 GA
81535561 ACAGAGCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.32, C:0.18, G:0.48, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGAGAGGCAGGCA
Found at i:81535864 original size:31 final size:31
Alignment explanation
Indices: 81535799--81535865 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
81535789 GGTTGTATTT
* *
81535799 TTTTATGCTAAATTTGTTGTTTTTGGCTGCA
1 TTTTATGCTAAATTTGTTGTATTTCGCTGCA
* * *
81535830 TTTTATGCTATATTTGTTGTATTTCGTTGGA
1 TTTTATGCTAAATTTGTTGTATTTCGCTGCA
81535861 TTTTA
1 TTTTA
81535866 ATGCAGGAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.07, G:0.18, T:0.58
Consensus pattern (31 bp):
TTTTATGCTAAATTTGTTGTATTTCGCTGCA
Found at i:81536013 original size:44 final size:41
Alignment explanation
Indices: 81535938--81536098 Score: 178
Period size: 43 Copynumber: 3.8 Consensus size: 41
81535928 TTTGTGGGAA
* *
81535938 AAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAAC
1 AAACGCCGCTAAAAACCATGACTTTTAGCGGCGCTTT--AAAC
* *
81535981 AAACGCCGCTAAAAAACCATGACTTTTAGCGGCGCTTGAAAAA
1 AAACGCCGCT-AAAAACCATGACTTTTAGCGGCGCTT-TAAAC
* * **
81536024 AAAGCGCCGTTAAAAACCATGACTTTTAGCGGTGCTTTTTAC
1 AAA-CGCCGCTAAAAACCATGACTTTTAGCGGCGCTTTAAAC
* * *
81536066 AAACGCCGCTACAAGCCATGACTTTTAGTGGCG
1 AAACGCCGCTAAAAACCATGACTTTTAGCGGCG
81536099 TTTTTTTAAA
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 25 0.25
42 4 0.04
43 40 0.40
44 31 0.31
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (41 bp):
AAACGCCGCTAAAAACCATGACTTTTAGCGGCGCTTTAAAC
Found at i:81541228 original size:25 final size:26
Alignment explanation
Indices: 81541199--81541268 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
81541189 AAACTCTTTT
81541199 AAAAG-AAACTCAAGAGAGATTCTTG
1 AAAAGAAAACTCAAGAGAGATTCTTG
* *
81541224 AAAAGAAAATTCAGGAGAGATTCTTG
1 AAAAGAAAACTCAAGAGAGATTCTTG
81541250 AAAAGAAAACTC-AGAGAGA
1 AAAAGAAAACTCAAGAGAGA
81541269 ATTTATTAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 11 0.28
26 29 0.73
ACGTcount: A:0.51, C:0.10, G:0.21, T:0.17
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAGATTCTTG
Found at i:81544499 original size:16 final size:16
Alignment explanation
Indices: 81544475--81544505 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81544465 TTAAAAACAC
81544475 AATTATTCTAAATAAA
1 AATTATTCTAAATAAA
*
81544491 AATTCTTCTAAATAA
1 AATTATTCTAAATAA
81544506 TGGTTGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTATTCTAAATAAA
Found at i:81544531 original size:16 final size:17
Alignment explanation
Indices: 81544512--81544547 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
81544502 ATAATGGTTG
81544512 TTTT-GAATATAACTAT
1 TTTTGGAATATAACTAT
*
81544528 TTTTGGAATATAATTAT
1 TTTTGGAATATAACTAT
81544545 TTT
1 TTT
81544548 AAACAAGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (17 bp):
TTTTGGAATATAACTAT
Found at i:81545111 original size:18 final size:18
Alignment explanation
Indices: 81545088--81545130 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
81545078 GGTCGAAAAA
81545088 TTAATATAATAATTATAT
1 TTAATATAATAATTATAT
* *
81545106 TTAATAT-TTAATTTTAT
1 TTAATATAATAATTATAT
81545123 TTAA-ATAA
1 TTAATATAA
81545131 AGTTATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 2 0.10
17 12 0.57
18 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAATATAATAATTATAT
Found at i:81545578 original size:22 final size:22
Alignment explanation
Indices: 81545553--81545614 Score: 56
Period size: 24 Copynumber: 2.8 Consensus size: 22
81545543 CATATTTGTG
81545553 ATATAAAAATATAATATTTCAAA
1 ATATAAAAATATAATATTT-AAA
*
81545576 TATATCAAAATAT-AT-TTTAAA
1 -ATATAAAAATATAATATTTAAA
* * *
81545597 AAATAAATATATACTATT
1 ATATAAAAATATAATATT
81545615 GTATACATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 9 0.29
21 4 0.13
22 5 0.16
23 2 0.06
24 11 0.35
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATAAAAATATAATATTTAAA
Found at i:81552266 original size:24 final size:24
Alignment explanation
Indices: 81552234--81552282 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
81552224 CTGTCTAGTC
81552234 TAGAGAATATAGATAATAAGAACA
1 TAGAGAATATAGATAATAAGAACA
81552258 TAGAGAATATAGATAATAAGAACA
1 TAGAGAATATAGATAATAAGAACA
81552282 T
1 T
81552283 GTGTCACTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.04, G:0.16, T:0.22
Consensus pattern (24 bp):
TAGAGAATATAGATAATAAGAACA
Found at i:81556334 original size:16 final size:16
Alignment explanation
Indices: 81556313--81556371 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 16
81556303 CTTTGGTTTA
*
81556313 CTGTAATGGAATAGAG
1 CTGTAATTGAATAGAG
81556329 CTGTAATTG---A-AG
1 CTGTAATTGAATAGAG
81556341 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
*
81556357 CTGTAATAGAATAGA
1 CTGTAATTGAATAGA
81556372 ATTGTAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
12 11 0.30
13 1 0.03
15 1 0.03
16 24 0.65
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:81556344 original size:12 final size:12
Alignment explanation
Indices: 81556327--81556351 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81556317 AATGGAATAG
81556327 AGCTGTAATTGA
1 AGCTGTAATTGA
81556339 AGCTGTAATTGA
1 AGCTGTAATTGA
81556351 A
1 A
81556352 TAGAGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (12 bp):
AGCTGTAATTGA
Found at i:81556377 original size:16 final size:16
Alignment explanation
Indices: 81556312--81556427 Score: 59
Period size: 16 Copynumber: 7.6 Consensus size: 16
81556302 CCTTTGGTTT
*
81556312 ACTGTAATGGAATAGA
1 ACTGTAATAGAATAGA
* *
81556328 GCTGTAATTG-A-AG-
1 ACTGTAATAGAATAGA
*
81556341 -CTGTAATTGAATAGA
1 ACTGTAATAGAATAGA
*
81556356 GCTGTAATAGAATAGA
1 ACTGTAATAGAATAGA
* **
81556372 ATTGTAATAAGTAATTCA
1 ACTGTAAT-AG-AATAGA
* *
81556390 ACTGT-TTAG-TTA-A
1 ACTGTAATAGAATAGA
*
81556403 A-TGGAATAGAATAGA
1 ACTGTAATAGAATAGA
81556418 ACTGTAATAG
1 ACTGTAATAG
81556428 TATTCTTGTA
Statistics
Matches: 75, Mismatches: 15, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
12 11 0.15
13 6 0.08
14 7 0.09
15 3 0.04
16 37 0.49
17 3 0.04
18 8 0.11
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (16 bp):
ACTGTAATAGAATAGA
Found at i:81556643 original size:16 final size:16
Alignment explanation
Indices: 81556624--81556655 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81556614 AATTATTATT
81556624 AAATATAATTTAATAA
1 AAATATAATTTAATAA
81556640 AAATATAATTTAATAA
1 AAATATAATTTAATAA
81556656 CATTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:81560586 original size:17 final size:18
Alignment explanation
Indices: 81560564--81560604 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
81560554 AAAATAAAAC
* *
81560564 ATTAAAAA-TATGTTTTA
1 ATTAAAAATTATCTTTAA
81560581 ATTAAAAATTATCTTTAA
1 ATTAAAAATTATCTTTAA
81560599 ATTAAA
1 ATTAAA
81560605 TAAAGAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (18 bp):
ATTAAAAATTATCTTTAA
Found at i:81565325 original size:13 final size:13
Alignment explanation
Indices: 81565307--81565331 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81565297 AGAAAGGTGA
81565307 GATTCTATTTCTT
1 GATTCTATTTCTT
81565320 GATTCTATTTCT
1 GATTCTATTTCT
81565332 ATGCATTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.60
Consensus pattern (13 bp):
GATTCTATTTCTT
Found at i:81570121 original size:27 final size:27
Alignment explanation
Indices: 81570083--81570233 Score: 187
Period size: 27 Copynumber: 5.6 Consensus size: 27
81570073 ATATTGAGTC
* *
81570083 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81570110 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81570138 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81570165 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81570192 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81570219 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81570234 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
27 83 0.78
28 24 0.22
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81570195 original size:82 final size:81
Alignment explanation
Indices: 81570083--81570232 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
81570073 ATATTGAGTC
* *
81570083 CGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTA
81570148 GTGCCGCATGGTCAATT
65 GTGCCGCATGGTCAATT
* **
81570165 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 CGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
81570229 GTGC
65 GTGC
81570233 TGTACAATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
CGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
TGCCGCATGGTCAATT
Found at i:81573107 original size:12 final size:12
Alignment explanation
Indices: 81573090--81573117 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
81573080 TCTATAAGAA
81573090 AACAAGACAAGT
1 AACAAGACAAGT
81573102 AACAAGACAAGT
1 AACAAGACAAGT
81573114 AACA
1 AACA
81573118 CGAGTAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.18, G:0.14, T:0.07
Consensus pattern (12 bp):
AACAAGACAAGT
Found at i:81580657 original size:26 final size:26
Alignment explanation
Indices: 81580622--81580693 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
81580612 AATTTTCTTG
* *
81580622 AAATTTTACTAAGAGTAAAATCGTCA
1 AAATTTTACTAAGGGTAAAATCATCA
* *
81580648 AATTTTTACTAGGGGTAAAATCATCA
1 AAATTTTACTAAGGGTAAAATCATCA
81580674 AAATTTTACT-AGGGTAAAAT
1 AAATTTTACTAAGGGTAAAAT
81580694 TGGGATGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 9 0.22
26 31 0.77
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (26 bp):
AAATTTTACTAAGGGTAAAATCATCA
Found at i:81582648 original size:46 final size:44
Alignment explanation
Indices: 81582561--81582686 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 44
81582551 ATATTTGTAT
*
81582561 CGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTCGTA-GC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAG-CACATCTCG-AGGC
*
81582607 GGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGAGGC
1 CGATGCATGTCCCAAACATGTCTTACACTAGC--ACATCTCGAGGC
* *
81582653 CGATGCAAGTCCCAAAAATGTCTTACACTAGCAC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCAC
81582687 TCGTCTCAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
44 13 0.18
45 15 0.21
46 43 0.61
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (44 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCACATCTCGAGGC
Found at i:81582703 original size:46 final size:46
Alignment explanation
Indices: 81582561--81582713 Score: 125
Period size: 46 Copynumber: 3.3 Consensus size: 46
81582551 ATATTTGTAT
* * * *
81582561 CGATGCCATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCGTA-GC
1 CGATG-CATGTCCCAAAAAT-GTCTTACACTAGCCTACATCTC-AAGGC
* * * *
81582607 GGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGAGGC
1 CGATGCATGTCCCAAAAATGTCTTACACTAGCCTACATCTCAAGGC
* * * *
81582653 CGATGCAAGTCCCAAAAATGTCTTACACTAGCACT-CGTCTCAATGT
1 CGATGCATGTCCCAAAAATGTCTTACACTAGC-CTACATCTCAAGGC
81582699 CGATGCCATGTCCCA
1 CGATG-CATGTCCCA
81582714 GACATGGTCT
Statistics
Matches: 88, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
44 10 0.11
45 15 0.17
46 54 0.61
47 9 0.10
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (46 bp):
CGATGCATGTCCCAAAAATGTCTTACACTAGCCTACATCTCAAGGC
Found at i:81590209 original size:15 final size:15
Alignment explanation
Indices: 81590189--81590218 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81590179 TGTAAGAAAA
81590189 AATTTTTCAAACAGG
1 AATTTTTCAAACAGG
*
81590204 AATTTTTCCAACAGG
1 AATTTTTCAAACAGG
81590219 CTAAACATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (15 bp):
AATTTTTCAAACAGG
Found at i:81594113 original size:40 final size:40
Alignment explanation
Indices: 81593630--81594099 Score: 706
Period size: 40 Copynumber: 11.8 Consensus size: 40
81593620 GAGAATTGAG
81593630 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
81593670 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
81593710 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
81593750 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
81593790 GGTGTTATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
81593830 AGTGATGTATTCGGGCTAAGTCCCGAAGAGTATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
81593870 GGTGTTATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
81593910 AGTGATGTATCCAGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
81593950 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
81593990 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
81594030 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
81594070 GGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
81594100 TAATCATGCT
Statistics
Matches: 385, Mismatches: 45, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 385 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:81595961 original size:85 final size:85
Alignment explanation
Indices: 81595818--81595996 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
81595808 GACCGGCCAT
*
81595818 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
81595883 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
81595903 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
81595968 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
81595988 GGGCATGGG
1 GAGCATGGG
81595997 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:81598003 original size:47 final size:47
Alignment explanation
Indices: 81597934--81598060 Score: 182
Period size: 47 Copynumber: 2.7 Consensus size: 47
81597924 AAATAATTTA
* * *
81597934 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
* * *
81597981 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
* *
81598028 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
81598061 TCCCGAAGGG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
Found at i:81598237 original size:37 final size:37
Alignment explanation
Indices: 81598179--81598257 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
81598169 CTGAGCTCTA
* * *
81598179 AAGACCCGATGACTACATGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
* *
81598216 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
81598253 AAGAC
1 AAGAC
81598258 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:81602355 original size:13 final size:13
Alignment explanation
Indices: 81602339--81602363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81602329 GATATAATAA
81602339 AATAAAATAAAAT
1 AATAAAATAAAAT
81602352 AATAAAATAAAA
1 AATAAAATAAAA
81602364 GTATTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAAAATAAAAT
Found at i:81613588 original size:21 final size:22
Alignment explanation
Indices: 81613542--81613588 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
81613532 ATGTCATAAC
* *
81613542 CACACGACCGTGTGCCTCTTTT
1 CACACGACCATGTGCCTCTCTT
*
81613564 CACACGAGCATGTGCCTC-CTT
1 CACACGACCATGTGCCTCTCTT
81613585 CACA
1 CACA
81613589 TGGGAGTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.26
Consensus pattern (22 bp):
CACACGACCATGTGCCTCTCTT
Found at i:81624530 original size:47 final size:47
Alignment explanation
Indices: 81624479--81624813 Score: 535
Period size: 47 Copynumber: 7.1 Consensus size: 47
81624469 TTAGGATTTT
81624479 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81624526 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81624573 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81624620 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81624667 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81624714 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
81624761 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
81624808 ATGTGA
1 ATGTGA
81624814 AATATGTATG
Statistics
Matches: 262, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 262 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:81624583 original size:94 final size:94
Alignment explanation
Indices: 81624479--81624813 Score: 625
Period size: 94 Copynumber: 3.6 Consensus size: 94
81624469 TTAGGATTTT
* *
81624479 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
81624544 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
81624573 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
81624638 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
81624667 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
81624732 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * *
81624761 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
81624814 AATATGTATG
Statistics
Matches: 236, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 236 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:81624914 original size:141 final size:140
Alignment explanation
Indices: 81624491--81624967 Score: 383
Period size: 141 Copynumber: 3.4 Consensus size: 140
81624481 GTGATGAATG
* * *
81624491 TGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG-CATGCATATG
1 TGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGA-AATATGTATGAGACATGTATATG
* * *
81624552 TGTGATAAGGCCGAATGGCCAATGTG-GTGA-ATATGA-ACATGCATATATGTGATAAGGCCGAA
65 TG-G-TAAGGCCGAATGGCCAATGTGAAT-ATGTATGAGACATGC--ATATGTGGTAAGGCCGAA
*
81624614 TGGCCAATGTGATGAATG
125 TGGCCAATGTGA--AATA
* * * * *
81624632 TGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTG--GTGA-ATATGA-ACATGCATATA
1 TGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGAAAT-ATGTATGAGACATG--TATA
*
81624693 TGTGATAAGGCCGAATGGCCAATGTG-ATGAATG--TGAG-CATGCATATGTGTGATAAGGCCGA
63 TGTGGTAAGGCCGAATGGCCAATGTGAAT--ATGTATGAGACATGCATATGTG-G-TAAGGCCGA
*
81624754 ATGGCCAATGTGGTGAATA
124 ATGGCCAATGT-G-AAATA
* * *
81624773 TGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 TGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGAAATATGTATGAGACATGTATATGT
* * * * *
81624838 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTC
66 GGTAAGGCCGAATGGCCAATGTG-AATATGTATGAGACATGCATATGTGGTAAGGCCGAATGGCC
81624903 AATGTGAAATA
130 AATGTGAAATA
* * * * *
81624914 T-ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TGA-ACAT--G-CA--TATATGTGATAAAGCCGAATGGCCAATGTGAAATATGTA
81624968 GGCGATGTGC
Statistics
Matches: 277, Mismatches: 30, Indels: 53
0.77 0.08 0.15
Matches are distributed among these distances:
139 7 0.03
140 2 0.01
141 141 0.51
142 34 0.12
143 32 0.12
144 12 0.04
145 11 0.04
146 38 0.14
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (140 bp):
TGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGAAATATGTATGAGACATGTATATGT
GGTAAGGCCGAATGGCCAATGTGAATATGTATGAGACATGCATATGTGGTAAGGCCGAATGGCCA
ATGTGAAATA
Found at i:81624942 original size:98 final size:96
Alignment explanation
Indices: 81624784--81624967 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
81624774 GAACATGCAT
*
81624784 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
81624849 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
81624880 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
81624944 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
81624968 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:81624983 original size:50 final size:48
Alignment explanation
Indices: 81624783--81624967 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
81624773 TGAACATGCA
81624783 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
81624831 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
81624879 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
81624929 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
81624968 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:81625025 original size:98 final size:98
Alignment explanation
Indices: 81624778--81625007 Score: 279
Period size: 98 Copynumber: 2.4 Consensus size: 98
81624768 GAATATGAAC
* * * *
81624778 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
1 ATGCATATA--TGGTAAAGCCGAACGACCAATGTGAAATATATATATGAGATATGTATATGTGGT
*
81624841 AAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
64 AAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
* * **
81624876 ATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAA
1 ATGCATATATGGTAAAGCCGAACGACCAATGTGAAATATATATATGAGATATGTATATGTGGTAA
* *
81624941 AGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
66 AGCCGAATGGCTAATGTGAAATATGTAGGAGAT
* * * *
81624974 GTGCGTATATTGT-GA-CCGAACGACCAATGTGAAA
1 ATGCATATATGGTAAAGCCGAACGACCAATGTGAAA
81625008 GTGTGTATTA
Statistics
Matches: 115, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
96 38 0.33
97 3 0.03
98 74 0.64
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (98 bp):
ATGCATATATGGTAAAGCCGAACGACCAATGTGAAATATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTAGGAGAT
Found at i:81625189 original size:37 final size:37
Alignment explanation
Indices: 81625112--81625219 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
81625102 GGAAATATAT
*
81625112 TCCGGGTAAGACCCGATGACTACGTGT-GAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
81625148 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
81625185 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
81625220 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
36 27 0.40
37 41 0.60
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:81626541 original size:40 final size:40
Alignment explanation
Indices: 81626486--81626863 Score: 560
Period size: 40 Copynumber: 9.4 Consensus size: 40
81626476 GAGAATTGAG
81626486 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
*
81626526 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
*
81626566 AGTGATATATCCGGGCTAAG-TCCTGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTTCC-GAAGAGCATTCGTGCT
* *
81626606 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* *
81626646 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* * *
81626686 AGTGATGTATCTGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* *
81626726 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* *
81626766 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* ***
81626806 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* * *
81626846 GGTGTTGTATCCGGGCTA
1 AGTGATATATCCGGGCTA
81626864 GGTCCTGAAG
Statistics
Matches: 302, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 2 0.01
40 297 0.98
41 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
Found at i:81626874 original size:80 final size:80
Alignment explanation
Indices: 81626486--81626859 Score: 631
Period size: 80 Copynumber: 4.7 Consensus size: 80
81626476 GAGAATTGAG
* * * * *
81626486 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
81626551 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
81626566 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
81626631 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
81626646 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCTGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
81626711 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
81626726 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
81626791 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* ** * * *
81626806 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTGTATCCGG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGG
81626860 GCTAGGTCCT
Statistics
Matches: 279, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 279 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:81630874 original size:47 final size:47
Alignment explanation
Indices: 81630823--81631157 Score: 526
Period size: 47 Copynumber: 7.1 Consensus size: 47
81630813 TTAGGATTTT
81630823 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
81630870 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81630917 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81630964 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81631011 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81631058 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
81631105 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
81631152 ATGTGA
1 ATGTGA
81631158 AATATGTATG
Statistics
Matches: 260, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 260 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:81630927 original size:94 final size:94
Alignment explanation
Indices: 81630823--81631157 Score: 616
Period size: 94 Copynumber: 3.6 Consensus size: 94
81630813 TTAGGATTTT
* *
81630823 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
81630888 TGCATATGTGTGATAAGGCCGAATGGTCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
81630917 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
81630982 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
81631011 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
81631076 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * *
81631105 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
81631158 AATATGTATG
Statistics
Matches: 235, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 235 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:81631285 original size:98 final size:96
Alignment explanation
Indices: 81631128--81631311 Score: 307
Period size: 98 Copynumber: 1.9 Consensus size: 96
81631118 GAACATGCAT
*
81631128 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
81631193 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
81631224 ATATGTTGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
81631288 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
81631312 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 53 0.65
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:81631327 original size:50 final size:48
Alignment explanation
Indices: 81631127--81631311 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
81631117 TGAACATGCA
81631127 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
81631175 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
81631223 CATATGTTGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
81631273 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
81631312 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:81631565 original size:37 final size:37
Alignment explanation
Indices: 81631457--81631565 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
81631447 GGAAATATAT
*
81631457 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
81631494 TCTGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
81631531 TCCGGGTAAAACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
81631566 CGTCTGAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:81637298 original size:12 final size:12
Alignment explanation
Indices: 81637281--81637305 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81637271 CATAGGCATT
81637281 TAATTATCAAAA
1 TAATTATCAAAA
81637293 TAATTATCAAAA
1 TAATTATCAAAA
81637305 T
1 T
81637306 TATACGTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TAATTATCAAAA
Found at i:81638928 original size:25 final size:26
Alignment explanation
Indices: 81638899--81638948 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
81638889 TAAAACACTT
81638899 TTAAA-AGAAAACTCATAAGA-AATTC
1 TTAAACAGAAAACTCA-AAGAGAATTC
81638924 TTAAACAGAAAACTCAAAGAGAATT
1 TTAAACAGAAAACTCAAAGAGAATT
81638949 TTTATAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.56, C:0.12, G:0.10, T:0.22
Consensus pattern (26 bp):
TTAAACAGAAAACTCAAAGAGAATTC
Found at i:81643842 original size:47 final size:47
Alignment explanation
Indices: 81643769--81644081 Score: 250
Period size: 47 Copynumber: 6.7 Consensus size: 47
81643759 TGGGTAAGGT
*
81643769 GCCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * ** *
81643816 GTCGATGCCATGTCCCAAACATGGTCTTACACTGAAT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AA
* * * *
81643864 GCCGATG-CATGTCCTAGACAT-GTCTTGCACTGGCTTACGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
** ** *
81643909 GTTGATGCCATGTCCCAGACATGGTCTTACACTCACT-ATCATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AA
* * * *
81643957 GCC-AGTG-CATGAT-CCAGACAT-GTCTTACACTAGCACTCGTCTCAA
1 GCCGA-TGCCATG-TCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * ** **
81644002 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAACGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AA
81644051 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
81644082 AGCCCACACA
Statistics
Matches: 212, Mismatches: 38, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
45 7 0.03
46 63 0.30
47 105 0.50
48 37 0.17
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
Found at i:81643937 original size:93 final size:92
Alignment explanation
Indices: 81643769--81644081 Score: 364
Period size: 93 Copynumber: 3.3 Consensus size: 92
81643759 TGGGTAAGGT
* * * *
81643769 GCCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAA
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAG
*
81643834 ACATGGTCTTACACTGAATATCATCTCGTA
64 ACATGGTCTTACACT-ACTATCATCTCGTA
* * *
81643864 GCCGATGCATGTCCTAGACATGTCTTGCACTGGCTTACGTCTCAAGTTGATGCCATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGAC
81643929 ATGGTCTTACACTCACTATCATCTCG-A
66 ATGGTCTTACACT-ACTATCATCTCGTA
* * *
81643956 GGCC-AGTGCATGAT-CCAGACATGTCTTACACTAGCACT-CGTCTCAATGCCGATGCCATGTCC
1 -GCCGA-TGCATG-TCCCAGACATGTCTTACACTGGC-TTACGTCTCAA-GTCGATGCCATGTCC
* * ** *
81644018 TAGACATGGTCTTACACTAGCTCTCATAACGTG
61 CAGACATGGTCTTACACTA-CTATCATCTCGTA
81644051 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
81644082 AGCCCACACA
Statistics
Matches: 189, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
92 2 0.01
93 100 0.53
94 79 0.42
95 8 0.04
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTACTATCATCTCGTA
Found at i:81650446 original size:20 final size:20
Alignment explanation
Indices: 81650421--81650467 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
81650411 GGGCTGAGGG
*
81650421 CACGGGCGTGCCCCAATCCA
1 CACGGGCGTGCCCCAAGCCA
81650441 CACGGGCGTGCCCCAAGCCA
1 CACGGGCGTGCCCCAAGCCA
81650461 CACGGGC
1 CACGGGC
81650468 TGAGGGCACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.19, C:0.45, G:0.30, T:0.06
Consensus pattern (20 bp):
CACGGGCGTGCCCCAAGCCA
Found at i:81664275 original size:47 final size:45
Alignment explanation
Indices: 81664222--81664385 Score: 213
Period size: 47 Copynumber: 3.5 Consensus size: 45
81664212 AAGTCAATGC
81664222 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGCCGATG
* * * *
81664269 CATGTCCCAGGCATGTCTTACACTGGCT-TACATCTCAAGTCGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAGCCGATG
* *
81664314 CCATGTCCCAGACATGGTCTTACACTGATTATCATCTAGAGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGA-GCCGATG
81664362 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
81664386 AGCACTCGTC
Statistics
Matches: 102, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
45 8 0.08
46 42 0.41
47 45 0.44
48 7 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGCCGATG
Found at i:81664303 original size:46 final size:47
Alignment explanation
Indices: 81664222--81664437 Score: 212
Period size: 47 Copynumber: 4.6 Consensus size: 47
81664212 AAGTCAATGC
*
81664222 CATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCG-AGCCGATG
* * *
81664269 CATGTCCCAGGCAT-GTCTTACACTGGCTTA-CATCTCAAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGAGCCGATG
* *
81664314 CCATGTCCCAGACATGGTCTTACACT-GATTATCATCTAGAGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGA-GCCGATG
* * * * *
81664362 CATGTCCCAGACAT-GTCTTACACTAGC--ACTCGTCTCAATGTCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-TCATCTCGA-GCCGATG
* *
81664408 CCATGTCCTAGACATCGTCTTACACTGGCT
1 -CATGTCCCAGACATGGTCTTACACTGGCT
81664438 CTCATAATGT
Statistics
Matches: 141, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
45 8 0.06
46 56 0.40
47 59 0.42
48 18 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGAGCCGATG
Found at i:81664319 original size:93 final size:94
Alignment explanation
Indices: 81664205--81664483 Score: 350
Period size: 93 Copynumber: 3.0 Consensus size: 94
81664195 GCATTACATC
*
81664205 ACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-GCCGATG
1 ACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTAG-AGGCCGATG
* * *
81664269 CATGTCCCAGGCATGTCTTACACTGGC-TT
65 CATGTCCCAGACATGTCTTACACTAGCACT
* *
81664298 ACATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGATTATCATCTAGAGGCCGATGC
1 ACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTAGAGGCCGATGC
81664363 ATGTCCCAGACATGTCTTACACTAGCACT
66 ATGTCCCAGACATGTCTTACACTAGCACT
* * * * * * * *
81664392 -CGTCTCAATGTCAATGCCATGTCCTAGACATCGTCTTACACTGGCTCTCAT-AATGTGGTCGAT
1 ACATCTCAA-GTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTA-GAGGCCGAT
* *
81664455 GCATGGCCCATACATGTCTTAACACTAGC
64 GCATGTCCCAGACATGTCTT-ACACTAGC
81664484 CCACACACAA
Statistics
Matches: 163, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
92 1 0.01
93 92 0.56
94 62 0.38
95 8 0.05
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
ACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTAGAGGCCGATGC
ATGTCCCAGACATGTCTTACACTAGCACT
Found at i:81664857 original size:30 final size:30
Alignment explanation
Indices: 81664817--81664873 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
81664807 AATTCACATA
* * *
81664817 TTTGGTAAAATGACCATTTTGCCCCTAGAC
1 TTTGGCAAAATAACCATTTTACCCCTAGAC
81664847 TTTGGCAAAATAACCATTTTACCCCTA
1 TTTGGCAAAATAACCATTTTACCCCTA
81664874 TGCTCGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATAACCATTTTACCCCTAGAC
Found at i:81667826 original size:26 final size:26
Alignment explanation
Indices: 81667796--81667872 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
81667786 GCCAGCACAC
*
81667796 TAATATCGCAGCAAAGCTGCCAGTAA
1 TAATATCGCAACAAAGCTGCCAGTAA
* *
81667822 TAATATTGCAACAAAGCTGGCAGTAA
1 TAATATCGCAACAAAGCTGCCAGTAA
* * *
81667848 TAGTAACGCAACAAAGCTACCAGTA
1 TAATATCGCAACAAAGCTGCCAGTA
81667873 TCAGTATATG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (26 bp):
TAATATCGCAACAAAGCTGCCAGTAA
Found at i:81670381 original size:23 final size:23
Alignment explanation
Indices: 81670351--81670395 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
81670341 TCATTAGGTT
81670351 TGGATCACTTGGATAGCTCATTA
1 TGGATCACTTGGATAGCTCATTA
81670374 TGGATCACTTGGATAGCTCATT
1 TGGATCACTTGGATAGCTCATT
81670396 TCCACACATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (23 bp):
TGGATCACTTGGATAGCTCATTA
Found at i:81672004 original size:31 final size:31
Alignment explanation
Indices: 81671966--81672028 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
81671956 GTCAAACAAG
*
81671966 CTTTTCTTTCCCTTTCATATTGCTGGTGAAA
1 CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
81671997 CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
1 CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
81672028 C
1 C
81672029 CTCCCAAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.25, G:0.11, T:0.48
Consensus pattern (31 bp):
CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
Found at i:81676670 original size:28 final size:28
Alignment explanation
Indices: 81676639--81676709 Score: 67
Period size: 28 Copynumber: 2.5 Consensus size: 28
81676629 GAGTCCATAG
*
81676639 ATATATTTAATTAAT-ATTTA-TGATTTAA
1 ATATATTTAATTAATGA-ATAGTGATTT-A
*
81676667 ATATAGTATAA-TAATGAATAGTGATTTA
1 ATATA-TTTAATTAATGAATAGTGATTTA
*
81676695 ATAGATTTAATTAAT
1 ATATATTTAATTAAT
81676710 TGGTAAGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
27 4 0.11
28 20 0.57
29 11 0.31
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.46
Consensus pattern (28 bp):
ATATATTTAATTAATGAATAGTGATTTA
Found at i:81692558 original size:46 final size:46
Alignment explanation
Indices: 81692491--81692665 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
81692481 TGTAACCCGC
* *
81692491 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * *
81692537 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * *
81692587 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
81692630 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
81692666 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 62 0.58
47 28 0.26
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:81692606 original size:93 final size:93
Alignment explanation
Indices: 81692498--81692669 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81692488 CGCCCATAAG
* * *
81692498 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81692563 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
81692591 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81692656 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81692670 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:81694188 original size:27 final size:27
Alignment explanation
Indices: 81694150--81694202 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
81694140 AAGACCTCAG
81694150 TTTGTAAAATTACCGAAATACCCCTAA
1 TTTGTAAAATTACCGAAATACCCCTAA
*
81694177 TTTGTAAAATTACCGGAATACCCCTA
1 TTTGTAAAATTACCGAAATACCCCTA
81694203 TAGGGTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
TTTGTAAAATTACCGAAATACCCCTAA
Found at i:81694210 original size:27 final size:27
Alignment explanation
Indices: 81694153--81694213 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
81694143 ACCTCAGTTT
**
81694153 GTAAAATTACCGAAATACCCCTAATTT
1 GTAAAATTACCGAAATACCCCTAATGG
*
81694180 GTAAAATTACCGGAATACCCCT-ATAGG
1 GTAAAATTACCGAAATACCCCTAAT-GG
81694207 GTAAAAT
1 GTAAAAT
81694214 GACTGTTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCTAATGG
Found at i:81695041 original size:27 final size:26
Alignment explanation
Indices: 81694985--81695041 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
81694975 TGTTACTGAG
* *
81694985 ATGGGCTAGACCCAATTGATTCTGTT
1 ATGGGCTAGACCCAAATGATTCTGTA
81695011 ATGGGCTATGACCCAAATGATAT-TGTA
1 ATGGGCTA-GACCCAAATGAT-TCTGTA
81695038 ATGG
1 ATGG
81695042 CCTTTGGCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 8 0.30
27 18 0.67
28 1 0.04
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
ATGGGCTAGACCCAAATGATTCTGTA
Found at i:81697880 original size:35 final size:35
Alignment explanation
Indices: 81697841--81697910 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
81697831 TGCGAGGTAA
81697841 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
81697876 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
81697911 AACACTTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (35 bp):
GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
Found at i:81698657 original size:3 final size:3
Alignment explanation
Indices: 81698647--81698682 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
81698637 CCACTTTATT
81698647 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
81698683 AAGCTACCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:81703395 original size:26 final size:26
Alignment explanation
Indices: 81703358--81703467 Score: 202
Period size: 26 Copynumber: 4.2 Consensus size: 26
81703348 TGATACAAAT
* *
81703358 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81703384 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81703410 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81703436 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81703462 TGATAA
1 TGATAA
81703468 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:81705126 original size:27 final size:27
Alignment explanation
Indices: 81705088--81705200 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
81705078 GAGGAAGCGT
81705088 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
81705115 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
81705142 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
81705170 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
81705196 TCTGG
1 TCTGG
81705201 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 5 0.07
27 56 0.74
28 15 0.20
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:81705193 original size:54 final size:54
Alignment explanation
Indices: 81705086--81705200 Score: 178
Period size: 54 Copynumber: 2.1 Consensus size: 54
81705076 TGGAGGAAGC
*
81705086 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * *
81705140 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
81705194 GTTCTGG
1 GTTCTGG
81705201 CAGCCATGCT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
54 38 0.68
55 18 0.32
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:81709212 original size:26 final size:26
Alignment explanation
Indices: 81709175--81709258 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
81709165 TGATACAAAT
* *
81709175 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81709201 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81709227 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
81709253 TGATAA
1 TGATAA
81709259 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:81710912 original size:27 final size:27
Alignment explanation
Indices: 81710871--81710983 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
81710861 GAGGAAGCGT
*
81710871 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
81710898 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
81710925 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
81710953 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
81710979 TCTGG
1 TCTGG
81710984 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:81710976 original size:54 final size:54
Alignment explanation
Indices: 81710869--81710983 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
81710859 TGGAGGAAGC
*
81710869 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
81710923 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
81710977 GTTCTGG
1 GTTCTGG
81710984 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:81730664 original size:40 final size:40
Alignment explanation
Indices: 81730607--81730871 Score: 383
Period size: 40 Copynumber: 6.7 Consensus size: 40
81730597 CTAACGAGGT
* * * *
81730607 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
81730647 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
81730687 TAAGTCTCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
81730727 TAAGTCCTGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
81730767 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
81730807 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
81730847 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
81730872 GGTTATATCC
Statistics
Matches: 209, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 11 0.05
40 198 0.95
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:81739747 original size:28 final size:26
Alignment explanation
Indices: 81739711--81739777 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
81739701 TCATTATTCA
* *
81739711 TTTTGTGTTTATAAAAATTCTCTTTGAG
1 TTTTCTGTTTA-AAAAATTCTC-ATGAG
* *
81739739 TTTTCTGTTTAAGAATTTCTCATGAG
1 TTTTCTGTTTAAAAAATTCTCATGAG
81739765 TTTTCT-TTTAAAA
1 TTTTCTGTTTAAAA
81739778 GTGTTTTAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 6 0.18
26 10 0.29
27 8 0.24
28 10 0.29
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.54
Consensus pattern (26 bp):
TTTTCTGTTTAAAAAATTCTCATGAG
Found at i:81740305 original size:33 final size:33
Alignment explanation
Indices: 81740263--81740341 Score: 81
Period size: 33 Copynumber: 2.4 Consensus size: 33
81740253 CGAGGTTCTT
* * *
81740263 GGTTT-GGGTTAAGATTTAAATTTCAAGGTTT-G
1 GGTTTGGGGTTAA-AGTTAAAGTTCAACGTTTAG
*
81740295 GGTTTGGGGTTCAAAGTTCAAGTTCAACGTTTAAG
1 GGTTTGGGGTT-AAAGTTAAAGTTCAACGTTT-AG
81740330 GGTTTGGGGTTA
1 GGTTTGGGGTTA
81740342 CGTGTTATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 5 0.13
33 19 0.49
34 3 0.08
35 12 0.31
ACGTcount: A:0.23, C:0.06, G:0.32, T:0.39
Consensus pattern (33 bp):
GGTTTGGGGTTAAAGTTAAAGTTCAACGTTTAG
Found at i:81740397 original size:28 final size:28
Alignment explanation
Indices: 81740366--81740428 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
81740356 TAGATTTAGA
* * *
81740366 GTTTGGGGTT-ATAAGTTTAGGGTTCATG
1 GTTTGGGATTCATAA-TTTAAGGTTCAGG
* *
81740394 GTTTAGGATTCTTAATTTAAGGTTCAGG
1 GTTTGGGATTCATAATTTAAGGTTCAGG
81740422 GTTTGGG
1 GTTTGGG
81740429 TTTAGGGTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
28 25 0.89
29 3 0.11
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.43
Consensus pattern (28 bp):
GTTTGGGATTCATAATTTAAGGTTCAGG
Found at i:81741399 original size:13 final size:14
Alignment explanation
Indices: 81741381--81741415 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
81741371 TCTTGAACCA
81741381 CAAACCTTGAA-CT
1 CAAACCTTGAATCT
81741394 CAAACCTTGAATCT
1 CAAACCTTGAATCT
*
81741408 TAAACCTT
1 CAAACCTT
81741416 TAACCCTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.37, C:0.29, G:0.06, T:0.29
Consensus pattern (14 bp):
CAAACCTTGAATCT
Found at i:81741487 original size:20 final size:20
Alignment explanation
Indices: 81741459--81741507 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
81741449 AAGGATTTAA
* *
81741459 GGTTGAAGGTTGAAGTTTGG
1 GGTTCAAGGTTCAAGTTTGG
*
81741479 GGTTCAAGGTTCAAGTTTTG
1 GGTTCAAGGTTCAAGTTTGG
*
81741499 TGTTCAAGG
1 GGTTCAAGG
81741508 GTTTGGGGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.06, G:0.37, T:0.37
Consensus pattern (20 bp):
GGTTCAAGGTTCAAGTTTGG
Found at i:81741556 original size:14 final size:15
Alignment explanation
Indices: 81741537--81741574 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
81741527 AAGTTTGACA
81741537 TTTAGGGTTCTA-GG
1 TTTAGGGTTCTATGG
81741551 TTTAGGGTT-TATGG
1 TTTAGGGTTCTATGG
*
81741565 TTTATGGTTC
1 TTTAGGGTTC
81741575 ATGATTCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 19 0.90
ACGTcount: A:0.13, C:0.05, G:0.32, T:0.50
Consensus pattern (15 bp):
TTTAGGGTTCTATGG
Found at i:81742975 original size:26 final size:27
Alignment explanation
Indices: 81742926--81742978 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
81742916 ATCATAGCAC
* *
81742926 AAATCAGTCATTTATCCTCGAGGGGTA
1 AAATCAGTCATTTACCCTAGAGGGGTA
*
81742953 AAAT-AGTCATTTACCCTATAGGGGTA
1 AAATCAGTCATTTACCCTAGAGGGGTA
81742979 TTTTGGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (27 bp):
AAATCAGTCATTTACCCTAGAGGGGTA
Found at i:81748617 original size:40 final size:40
Alignment explanation
Indices: 81748524--81748741 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
81748514 AAGCCAAGTA
* * *
81748524 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
81748562 CCTTCGGGACATAGCCCGGATATAGTAACTCGCGCCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81748602 CCTTCAGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81748642 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81748682 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
81748723 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81748742 TTATCATCCA
Statistics
Matches: 158, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 101 0.64
41 24 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81753302 original size:93 final size:90
Alignment explanation
Indices: 81753122--81753432 Score: 317
Period size: 93 Copynumber: 3.3 Consensus size: 90
81753112 GGTAAGGTGT
* * *
81753122 CGATGCCATGTCCCTGACACGGTCTTACACTGGCTCACATCTTAAGTCGATGCCATGTCCCAGAC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTGGCT-ACATCTCAAGTCGATGCCATGTCCCAGAC
81753187 ATGGTT-TTACACTGATTATCATCTCGTAGC
63 AT-GTTCTTACACT-A-TATCATCTCGTAGC
*
81753217 CGATGAATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGTCGATGCCATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCAAGTCGATGCCATGTCCCAGACAT
81753282 GTTCTTACACTCACTATCATCTCG-AGGC
65 GTTCTTACACT-A-TATCATCTCGTA-GC
* * * * * *
81753310 CGGTGCATGTCCTAGACATGTCTTACACTAGC-ACTTGTCTCAATGCCGATGCCATGTCCTAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTAC--ATCTCAA-GTCGATGCCATGTCCCAGAC
* * *
81753374 ATGGTCTTACACTATATC-TCATAATGTGGC
63 ATGTTCTTACACTATATCATC-T--CGTAGC
81753404 CGATGCATG-CCGCAGACATGTCTTACACT
1 CGATGCATGTCC-CAGACATGTCTTACACT
81753433 AGCCCACACA
Statistics
Matches: 187, Mismatches: 18, Indels: 23
0.82 0.08 0.10
Matches are distributed among these distances:
91 4 0.02
92 9 0.05
93 100 0.53
94 69 0.37
95 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (90 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCAAGTCGATGCCATGTCCCAGACATG
TTCTTACACTATATCATCTCGTAGC
Found at i:81753304 original size:47 final size:46
Alignment explanation
Indices: 81753122--81753386 Score: 236
Period size: 47 Copynumber: 5.7 Consensus size: 46
81753112 GGTAAGGTGT
* * * * *
81753122 CGATGCCATGTCCCTGACACGGTCTTACACTGGCTCA-CATCTTAAGT
1 CGATGCCATGTCCCAGACA-TGTCTTACACTGACT-ATCATCTCAAGC
* * *
81753169 CGATGCCATGTCCCAGACATGGTTTTACACTGATTATCATCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGACTATCATCTC-AAGC
* * *
81753217 CGATG-AATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAAGT
1 CGATGCCATGTCCCAGACATGTCTTACACTGACTAT-CATCTCAAGC
* *
81753262 CGATGCCATGTCCCAGACATGTTCTTACACTCACTATCATCTCGAGGC
1 CGATGCCATGTCCCAGACATG-TCTTACACTGACTATCATCTC-AAGC
* * *
81753310 CGGTG-CATGTCCTAGACATGTCTTACACTAGCACT-T-GTCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACT-G-ACTATCATCTCAA-GC
*
81753356 CGATGCCATGTCCTAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACAT-GTCTTACACT
81753387 ATATCTCATA
Statistics
Matches: 180, Mismatches: 25, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
45 9 0.05
46 51 0.28
47 93 0.52
48 27 0.15
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGACTATCATCTCAAGC
Found at i:81754404 original size:27 final size:26
Alignment explanation
Indices: 81754375--81754426 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
81754365 CTTTTAAGAC
* *
81754375 CCCCAATTTTTATTCTTTAGCTATTT
1 CCCCAAGTTTTATTCTCTAGCTATTT
81754401 CCCCAAGTTTTATTCTCTAGCTATTT
1 CCCCAAGTTTTATTCTCTAGCTATTT
81754427 GACACCTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.25, G:0.06, T:0.50
Consensus pattern (26 bp):
CCCCAAGTTTTATTCTCTAGCTATTT
Found at i:81762646 original size:28 final size:28
Alignment explanation
Indices: 81762608--81762703 Score: 90
Period size: 28 Copynumber: 3.4 Consensus size: 28
81762598 TAATTTCGCA
*
81762608 CACACACAGTGCCTTACACCCGATCTCG
1 CACACATAGTGCCTTACACCCGATCTCG
* ** * *
81762636 CACACATAGTGCTTGGTTA-A--TAATTTTG
1 CACACATAGTGC---CTTACACCCGATCTCG
81762664 CACACATAGTGCCTTACACCCGATCTCG
1 CACACATAGTGCCTTACACCCGATCTCG
81762692 CACACATAGTGC
1 CACACATAGTGC
81762704 ATATATTCAT
Statistics
Matches: 51, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
28 43 0.84
30 1 0.02
31 3 0.06
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (28 bp):
CACACATAGTGCCTTACACCCGATCTCG
Found at i:81779946 original size:47 final size:48
Alignment explanation
Indices: 81779875--81780094 Score: 201
Period size: 47 Copynumber: 4.7 Consensus size: 48
81779865 GGTAAGGTGC
* * *
81779875 CAATGCCATGTCTCAGACACGGTCTTACA-TTAGCTCA-CATCTC-AAGT
1 CAATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTCGAAGT
*
81779922 CAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAG-
1 CAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAAGT
* * *
81779969 CTGATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAGGC
1 C-AATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAAGT
* *
81780017 CGATG-CATGTCCCAGACAT-GTCTTACACT-AGC-ACTCGTCTC-AA-T
1 CAATGCCATGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTCGAAGT
* *
81780061 GCAGATGCCATGTCCTAGAAATGGTCTTACACTG
1 -CA-ATGCCATGTCCCAGACATGGTCTTACACTG
81780095 GCTCTCATAA
Statistics
Matches: 148, Mismatches: 13, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
45 4 0.03
46 21 0.14
47 105 0.71
48 18 0.12
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAAGT
Found at i:81780073 original size:94 final size:95
Alignment explanation
Indices: 81779877--81780142 Score: 253
Period size: 94 Copynumber: 2.8 Consensus size: 95
81779867 TAAGGTGCCA
* * * * *
81779877 ATGCCATGTCTCAGACACGGTCTTACA-TTAGCTCA-CATCTC-AAGTCAATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTCGAGGCCAATG-CATGTCCCAGA
* *
81779939 CATGGTCTTACACT-G-ACTATCATCTCGTAGCTG
63 CAT-GTCTTACACTAGCAC-ATCATCTCATAGCAG
*
81779972 ATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAGGCCGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAGGCCAATGCATGTCCCAGACAT
*
81780036 GTCTTACACTAGCAC-TCGTCTCA-ATGCAG
66 GTCTTACACTAGCACATCATCTCATA-GCAG
* * * * ** * *
81780065 ATGCCATGTCCTAGAAATGGTCTTACACTGGCTCTCATAACGTGGCCAATGCATGTCCCAGAGAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAGGCCAATGCATGTCCCAGACAT
81780130 GT-TTAACACTAGC
66 GTCTT-ACACTAGC
81780143 CCACACACAA
Statistics
Matches: 145, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
92 1 0.01
93 25 0.17
94 106 0.73
95 13 0.09
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAGGCCAATGCATGTCCCAGACAT
GTCTTACACTAGCACATCATCTCATAGCAG
Found at i:81780120 original size:47 final size:47
Alignment explanation
Indices: 81779922--81780126 Score: 204
Period size: 47 Copynumber: 4.3 Consensus size: 47
81779912 CATCTCAAGT
*
81779922 CAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGC
1 CAATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTGGC
** *
81779970 TGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAGGC
1 CAATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTGGC
* * *
81780017 CGATGCATGTCCCAGACAT-GTCTTACACT-AGC-ACTCGTCTCAAT-G-
1 CAATGCATGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTC-GTGGC
* * * * **
81780062 CAGATGCCATGTCCTAGAAATGGTCTTACACTGGCTCTCATAACGTGGC
1 CA-ATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTGGC
81780111 CAATGCATGTCCCAGA
1 CAATGCATGTCCCAGA
81780127 GATGTTTAAC
Statistics
Matches: 129, Mismatches: 18, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.02
46 21 0.16
47 81 0.63
48 22 0.17
49 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (47 bp):
CAATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTGGC
Found at i:81780516 original size:30 final size:30
Alignment explanation
Indices: 81780475--81780532 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81780465 AAATTCACAT
* * *
81780475 CTTTGGTAAAATGATCATTTTACCCCTAGA
1 CTTTGGCAAAATAACCATTTTACCCCTAGA
*
81780505 CTTTGGCAAAATAACCATTTTATCCCTA
1 CTTTGGCAAAATAACCATTTTACCCCTA
81780533 TTCTCGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTTTACCCCTAGA
Found at i:81783512 original size:26 final size:26
Alignment explanation
Indices: 81783443--81783519 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
81783433 ACACTAATAT
* *
81783443 CGCAGCAAAGCTGCCACTAATAATAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
* * * *
81783469 CACAACAAAGTTGGCAGTAATAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
*
81783495 CGCAGCAAAGCTGCCAGTATTAGTA
1 CGCAGCAAAGCTGCCAGTAATAGTA
81783520 TATGTGGCAA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.18
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:81784139 original size:16 final size:16
Alignment explanation
Indices: 81784118--81784148 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
81784108 CCGTTCCTTC
81784118 GGCTTTTCAGATTTTT
1 GGCTTTTCAGATTTTT
81784134 GGCTTTTCAGATTTT
1 GGCTTTTCAGATTTT
81784149 ACCAGTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.19, T:0.55
Consensus pattern (16 bp):
GGCTTTTCAGATTTTT
Found at i:81786396 original size:34 final size:35
Alignment explanation
Indices: 81786358--81786435 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 35
81786348 TAAAACATCT
* * *
81786358 GTTCATACA-AAATAGCAATTCACACTAAATGATA
1 GTTCATACACAAATAACAATTCACACAAAATAATA
* **
81786392 GTTCATA-ACATATAACAATTCATGCAAAATAATA
1 GTTCATACACAAATAACAATTCACACAAAATAATA
81786426 GTTCATACAC
1 GTTCATACAC
81786436 CATCATAACT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
33 1 0.03
34 33 0.92
35 2 0.06
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (35 bp):
GTTCATACACAAATAACAATTCACACAAAATAATA
Found at i:81787243 original size:24 final size:26
Alignment explanation
Indices: 81787188--81787263 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 26
81787178 ATATAGCAGA
*
81787188 CCCACGTAG-ATATATTATACATATAAC
1 CCCAC-TAGTATATATTATATATA-AAC
81787215 ACCCACTAGTATATA-TAT-TATAAAC
1 -CCCACTAGTATATATTATATATAAAC
81787240 CCCACTAGTATATATTATATATAA
1 CCCACTAGTATATATTATATATAA
81787264 CACTATATTA
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
24 14 0.32
25 6 0.14
26 8 0.18
27 6 0.14
28 10 0.23
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (26 bp):
CCCACTAGTATATATTATATATAAAC
Found at i:81787270 original size:17 final size:17
Alignment explanation
Indices: 81787250--81787283 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81787240 CCCACTAGTA
81787250 TATATTATATATAACAC
1 TATATTATATATAACAC
81787267 TATATTATATATAACAC
1 TATATTATATATAACAC
81787284 CAAAACCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (17 bp):
TATATTATATATAACAC
Found at i:81789622 original size:7 final size:7
Alignment explanation
Indices: 81789610--81789634 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81789600 AAACCACTAC
81789610 TATCTCA
1 TATCTCA
81789617 TATCTCA
1 TATCTCA
81789624 TATCTCA
1 TATCTCA
81789631 TATC
1 TATC
81789635 AGTGCTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (7 bp):
TATCTCA
Found at i:81792154 original size:17 final size:15
Alignment explanation
Indices: 81792103--81792154 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 15
81792093 TCAAACCTGG
81792103 TTTTATTT-TTAATA
1 TTTTATTTATTAATA
*
81792117 TTTTA-TTATTACTA
1 TTTTATTTATTAATA
81792131 TTATTATTTAATTAATCA
1 TT-TTATTT-ATTAAT-A
81792149 TTTTAT
1 TTTTAT
81792155 CCTATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 2 0.06
14 12 0.39
15 3 0.10
16 2 0.06
17 9 0.29
18 3 0.10
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTATTTATTAATA
Found at i:81794266 original size:13 final size:13
Alignment explanation
Indices: 81794250--81794274 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81794240 AAAAAAAAAC
81794250 TTTAAACATTCAT
1 TTTAAACATTCAT
81794263 TTTAAACATTCA
1 TTTAAACATTCA
81794275 ACAGAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTAAACATTCAT
Found at i:81795327 original size:44 final size:44
Alignment explanation
Indices: 81795276--81795704 Score: 682
Period size: 44 Copynumber: 9.8 Consensus size: 44
81795266 GATGTCCTTG
* * *
81795276 AGAGACGCCAAATCTGCT-TCTTCGATTTTGTTC-CTTATCAATAC
1 AGAGACGCCAAATCTGCTATCTTCGA-TCTGCTCTCTGA-CAATAC
* *
81795320 AGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCTGACAATAT
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
81795364 AGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
81795408 AGAGACGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
81795452 AGAGACACCAAATCTGCGATCTTCGATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
81795496 AGAGACGCCAAATCTGCTATTTTTGATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
81795540 AAAGACGCCAAATCTGCTATCTTCGATCTGCTTTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
81795584 AGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
81795628 AGAGACACCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
81795672 AGAGACGCCAAATCTTCTATCTTCGATCTGCTC
1 AGAGACGCCAAATCTGCTATCTTCGATCTGCTC
81795705 CTTGTAAACG
Statistics
Matches: 355, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
44 346 0.97
45 9 0.03
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (44 bp):
AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
Found at i:81807571 original size:23 final size:22
Alignment explanation
Indices: 81807545--81807597 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
81807535 ATTTCATTCG
81807545 AATATGTAAAAACGAAAACAAAT
1 AATAT-TAAAAACGAAAACAAAT
81807568 -A-A-TAAAAACGAAAACAAAT
1 AATATTAAAAACGAAAACAAAT
81807587 AATATATAAAA
1 AATAT-TAAAA
81807598 TTTAACCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
19 17 0.65
20 1 0.04
21 2 0.08
22 1 0.04
23 5 0.19
ACGTcount: A:0.70, C:0.08, G:0.06, T:0.17
Consensus pattern (22 bp):
AATATTAAAAACGAAAACAAAT
Found at i:81807575 original size:19 final size:19
Alignment explanation
Indices: 81807551--81807590 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
81807541 TTCGAATATG
81807551 TAAAAACGAAAACAAATAA
1 TAAAAACGAAAACAAATAA
81807570 TAAAAACGAAAACAAATAA
1 TAAAAACGAAAACAAATAA
81807589 TA
1 TA
81807591 TATAAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.72, C:0.10, G:0.05, T:0.12
Consensus pattern (19 bp):
TAAAAACGAAAACAAATAA
Found at i:81808655 original size:13 final size:13
Alignment explanation
Indices: 81808637--81808661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81808627 AAAAAAAAAC
81808637 TTTAAACATTCAT
1 TTTAAACATTCAT
81808650 TTTAAACATTCA
1 TTTAAACATTCA
81808662 ACAGAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTAAACATTCAT
Found at i:81809496 original size:17 final size:18
Alignment explanation
Indices: 81809474--81809511 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
81809464 TTAAATGGAC
*
81809474 TGTTTAA-TTTTATTTTT
1 TGTTTAATTTTTAATTTT
81809491 TGTTTAATTTTTAATTTT
1 TGTTTAATTTTTAATTTT
81809509 TGT
1 TGT
81809512 AAGGCCGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (18 bp):
TGTTTAATTTTTAATTTT
Found at i:81809643 original size:28 final size:28
Alignment explanation
Indices: 81809612--81809682 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
81809602 GAGTCCATAG
81809612 ATATATTTAATTAAT-ATTTA-TGATTTAA
1 ATATATTTAATTAATGA-TTAGTGATTT-A
*
81809640 ATATAGTATAA-TAATGATTAGTGATTTA
1 ATATA-TTTAATTAATGATTAGTGATTTA
*
81809668 ATAGATTTAATTAAT
1 ATATATTTAATTAAT
81809683 TGGTAAGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
27 4 0.11
28 21 0.58
29 11 0.31
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (28 bp):
ATATATTTAATTAATGATTAGTGATTTA
Found at i:81813070 original size:12 final size:12
Alignment explanation
Indices: 81813053--81813078 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81813043 CACCCTGTTC
81813053 CTCTCCTCTTTT
1 CTCTCCTCTTTT
81813065 CTCTCCTCTTTT
1 CTCTCCTCTTTT
81813077 CT
1 CT
81813079 TTCTTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (12 bp):
CTCTCCTCTTTT
Found at i:81814277 original size:84 final size:84
Alignment explanation
Indices: 81814136--81814309 Score: 348
Period size: 84 Copynumber: 2.1 Consensus size: 84
81814126 AAGTAATTAA
81814136 ATTGAAAAGAGGTCAAATCAGGTACGTTTTGAGCCCTAACTATTTGGCATGGCATGGTAGCAATG
1 ATTGAAAAGAGGTCAAATCAGGTACGTTTTGAGCCCTAACTATTTGGCATGGCATGGTAGCAATG
81814201 TTGCTAGTTTTATTGAATG
66 TTGCTAGTTTTATTGAATG
81814220 ATTGAAAAGAGGTCAAATCAGGTACGTTTTGAGCCCTAACTATTTGGCATGGCATGGTAGCAATG
1 ATTGAAAAGAGGTCAAATCAGGTACGTTTTGAGCCCTAACTATTTGGCATGGCATGGTAGCAATG
81814285 TTGCTAGTTTTATTGAATG
66 TTGCTAGTTTTATTGAATG
81814304 ATTGAA
1 ATTGAA
81814310 TGTTTGACAT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (84 bp):
ATTGAAAAGAGGTCAAATCAGGTACGTTTTGAGCCCTAACTATTTGGCATGGCATGGTAGCAATG
TTGCTAGTTTTATTGAATG
Found at i:81815009 original size:5 final size:5
Alignment explanation
Indices: 81814999--81815024 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
81814989 ATTTTTTATA
81814999 TGTAT TGTAT TGTAT TGTAT TGTAT T
1 TGTAT TGTAT TGTAT TGTAT TGTAT T
81815025 AAATGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (5 bp):
TGTAT
Found at i:81817959 original size:9 final size:9
Alignment explanation
Indices: 81817945--81817969 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
81817935 TGGTAATGCC
81817945 CATTTAGTA
1 CATTTAGTA
81817954 CATTTAGTA
1 CATTTAGTA
81817963 CATTTAG
1 CATTTAG
81817970 GTTTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (9 bp):
CATTTAGTA
Found at i:81819118 original size:21 final size:22
Alignment explanation
Indices: 81819078--81819118 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
81819068 TGGGCATTAC
*
81819078 CAAAGATCCCAAATACAAAAAT
1 CAAAGATCCCAAAGACAAAAAT
*
81819100 CAAA-ATCCCAAAGAGAAAA
1 CAAAGATCCCAAAGACAAAA
81819119 TTAGAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.61, C:0.22, G:0.07, T:0.10
Consensus pattern (22 bp):
CAAAGATCCCAAAGACAAAAAT
Found at i:81820399 original size:35 final size:36
Alignment explanation
Indices: 81820353--81820492 Score: 155
Period size: 35 Copynumber: 4.2 Consensus size: 36
81820343 ATAATCTTCA
81820353 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
81820389 ATGAT-TGCAATC-T---TA-GAT---A--TTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
81820414 ATGATATGCAATCTTAGATACGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
81820450 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
81820486 A-GATATG
1 ATGATATG
81820493 ATTTTGTAAT
Statistics
Matches: 89, Mismatches: 1, Indels: 28
0.75 0.01 0.24
Matches are distributed among these distances:
25 11 0.12
26 7 0.08
27 2 0.02
30 5 0.06
31 5 0.06
34 2 0.02
35 28 0.31
36 19 0.21
37 10 0.11
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:81820417 original size:25 final size:26
Alignment explanation
Indices: 81820383--81820433 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
81820373 TGATACAATC
81820383 TTAGATATGAT-TGCAATCTTAGATA
1 TTAGATATGATATGCAATCTTAGATA
81820408 TTAGATATGATATGCAATCTTAGATA
1 TTAGATATGATATGCAATCTTAGATA
81820434 CGATACAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (26 bp):
TTAGATATGATATGCAATCTTAGATA
Found at i:81820422 original size:61 final size:61
Alignment explanation
Indices: 81820353--81820469 Score: 225
Period size: 61 Copynumber: 1.9 Consensus size: 61
81820343 ATAATCTTCA
*
81820353 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGATATTAGAT
1 ATGATATGCAATCTTAGATACGATACAATCTTAGATATGATTGCAATCTTAGATATTAGAT
81820414 ATGATATGCAATCTTAGATACGATACAATCTTAGATATGATTGCAATCTTAGATAT
1 ATGATATGCAATCTTAGATACGATACAATCTTAGATATGATTGCAATCTTAGATAT
81820470 GATATGCAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (61 bp):
ATGATATGCAATCTTAGATACGATACAATCTTAGATATGATTGCAATCTTAGATATTAGAT
Found at i:81820492 original size:17 final size:19
Alignment explanation
Indices: 81820353--81820485 Score: 152
Period size: 17 Copynumber: 6.9 Consensus size: 19
81820343 ATAATCTTCA
81820353 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81820372 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81820389 ATGAT-TGCAATCTTAGATATTAGAT
1 ATGATATGCAATC-------TTAGAT
81820414 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
81820433 ACGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81820450 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81820468 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
81820486 AGATATGATT
Statistics
Matches: 99, Mismatches: 2, Indels: 26
0.78 0.02 0.20
Matches are distributed among these distances:
17 31 0.31
18 21 0.21
19 29 0.29
25 11 0.11
26 7 0.07
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:81820511 original size:22 final size:22
Alignment explanation
Indices: 81820353--81820508 Score: 93
Period size: 17 Copynumber: 7.8 Consensus size: 22
81820343 ATAATCTTCA
81820353 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81820372 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81820389 ATGAT-TGCAATCTTAGATATTAGAT
1 ATGATATGCAATCTTAG--A--AGAT
81820414 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
81820433 ACGATA--CAATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
81820450 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81820468 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
81820490 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
81820509 GATTTAATTT
Statistics
Matches: 112, Mismatches: 4, Indels: 38
0.73 0.03 0.25
Matches are distributed among these distances:
17 29 0.26
18 21 0.19
19 24 0.21
22 8 0.07
23 12 0.11
25 9 0.08
26 9 0.08
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:81825971 original size:7 final size:7
Alignment explanation
Indices: 81825926--81825972 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
81825916 CTATTTCAAA
81825926 AAAAAAG
1 AAAAAAG
*
81825933 GAAAAA-
1 AAAAAAG
*
81825939 ATAAAAG
1 AAAAAAG
81825946 -AAAAAG
1 AAAAAAG
81825952 AGAAAAAG
1 A-AAAAAG
81825960 AAAAAAG
1 AAAAAAG
81825967 AAAAAA
1 AAAAAA
81825973 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 9 0.27
7 17 0.52
8 7 0.21
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:81825971 original size:13 final size:12
Alignment explanation
Indices: 81825923--81825971 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
81825913 CTTCTATTTC
*
81825923 AAAAAAAAAGGA
1 AAAAAAAAAAGA
*
81825935 AAAAATAAAAGA
1 AAAAAAAAAAGA
81825947 AAAAGAGAAAAAGA
1 AAAA-A-AAAAAGA
81825961 AAAAAGAAAAA
1 AAAAA-AAAAA
81825972 ATGGAGAGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
12 14 0.44
13 8 0.25
14 10 0.31
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:81827020 original size:44 final size:45
Alignment explanation
Indices: 81826877--81827191 Score: 229
Period size: 44 Copynumber: 7.1 Consensus size: 45
81826867 TAAAGAAACA
81826877 AGATTTGGCATCCCTGTGTTTATAGGGAA-ACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACA-AGATCGAAGATAGC
* ** * * * * **
81826922 AGATCTAACA-CTCCTATGCTTACAGCGAAGC-AGATCGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAAGATCGAAGATAGC
** * *
81826967 A-ACATGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
81827010 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * * * ***
81827054 AGATCTGACATTCCTGTGCTTACA-GTAAAATAGATCAAAGATTTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACA-AGATCGAAGATAGC
**
81827099 A-ACATGGCATCCCTGTGTTTATAGGGAACAACG-T-GAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAA-GATCGAAGATAGC
* * *
81827142 AGATTTGGCATCCCTGTATTTACAGGGAATAA-ATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAG--ATAGC
81827188 AGAT
1 AGAT
81827192 CTGATTTTCA
Statistics
Matches: 202, Mismatches: 52, Indels: 31
0.71 0.18 0.11
Matches are distributed among these distances:
43 22 0.11
44 121 0.60
45 50 0.25
46 9 0.04
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (45 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
Found at i:81827115 original size:132 final size:132
Alignment explanation
Indices: 81826869--81827195 Score: 469
Period size: 132 Copynumber: 2.5 Consensus size: 132
81826859 ATGTAGATTA
*
81826869 AAGA-AACAAGATTTGGCATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGCAGATCTAACAC
1 AAGATAAC-AGATTTGGCATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGCAGATCTGACAC
* * *
81826933 TCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAA
64 TCCTATGCTTACAGCAAAACAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAA
81826998 -GTTG
129 CG-TG
*
81827002 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTC
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTC
* * * *
81827067 CTGTGCTTACAGTAAAATAGATCAAAGATTTTAACATGGCATCCCTGTGTTTATAGGGAACAACG
66 CTATGCTTACAGCAAAACAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAACG
81827132 TG
131 TG
* * * * *
81827134 AAGATAGCAGATTTGGCATCCCTGTATTTACAGGGAATAAATCGAAGACATAGCAGATCTGA
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGA
81827196 TTTTCAGATG
Statistics
Matches: 176, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
132 128 0.73
133 32 0.18
134 16 0.09
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (132 bp):
AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTC
CTATGCTTACAGCAAAACAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAACG
TG
Found at i:81827434 original size:175 final size:175
Alignment explanation
Indices: 81827143--81827718 Score: 841
Period size: 175 Copynumber: 3.3 Consensus size: 175
81827133 GAAGATAGCA
* * * * * * *
81827143 GATTTGGCATCCCTGTATTTACAGGGAATAAATCGAAGACATAGCAGATCTGATTTTCAGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
* * *
81827208 TTCACACCAAAGCAGATCCAAGATAACAGATTTGGCATCTCCATTTTGACGGAAAGCAGGA-ACA
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTTGACGGAGAGCA-GATACA
* * * *
81827272 TAGCAGGTCTAACCTTCAGATG-TCTATACTGAACCAGATCCAAGAT
130 TAGTAGATCTAACCTTCAGATGAT-TTTACTGAAGCAGATCCAAGAT
* *
81827318 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGACTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
*
81827383 CTCACACCAAAGCAGATCTAAGATAACAGATCTGGCATCTCCATTTTGACGGAGAGCAGATACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTTGACGGAGAGCAGATACAT
* *
81827448 AGTAGATCTAACCTTCGGATGATTTTACTGAAGCAAATCCAAGAT
131 AGTAGATCTAACCTTCAGATGATTTTACTGAAGCAGATCCAAGAT
* *
81827493 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAAATTTGACTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
* * * *
81827558 CTCACACCAAAGAAGATCCAAGATAACAGATCTCGCATCTCCATTTCGACAGAGAGCAGATACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTTGACGGAGAGCAGATACAT
* *
81827623 AATAGATCTAACCTTCAGATGATTTTACTGAAGTAGATCCAAGAT
131 AGTAGATCTAACCTTCAGATGATTTTACTGAAGCAGATCCAAGAT
* * * *
81827668 GATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAACAGATTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTT
81827719 AGCTTTCATG
Statistics
Matches: 363, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
174 2 0.01
175 360 0.99
176 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (175 bp):
GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTTGACGGAGAGCAGATACAT
AGTAGATCTAACCTTCAGATGATTTTACTGAAGCAGATCCAAGAT
Found at i:81828269 original size:35 final size:37
Alignment explanation
Indices: 81828205--81828295 Score: 136
Period size: 35 Copynumber: 2.5 Consensus size: 37
81828195 TCAATGAAAT
81828205 GCAATCTTAGATATGATATGCAATCTTAGATATCATA
1 GCAATCTTAGATATGATATGCAATCTTAGATATCATA
*
81828242 -CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 GCAATCTTAGATATGATATGCAATCTTAGATATCATA
81828277 TGCAATCTTAGA-A-GATATG
1 -GCAATCTTAGATATGATATG
81828296 ATTTTGTAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
35 21 0.42
36 19 0.38
37 10 0.20
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (37 bp):
GCAATCTTAGATATGATATGCAATCTTAGATATCATA
Found at i:81828295 original size:17 final size:19
Alignment explanation
Indices: 81828198--81828288 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
81828188 ATAATCTTCA
*
81828198 ATGAAATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81828217 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
81828236 ATCATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81828253 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81828271 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
81828289 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:81828314 original size:22 final size:22
Alignment explanation
Indices: 81828198--81828311 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
81828188 ATAATCTTCA
*
81828198 ATGAAATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81828217 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
81828236 ATCATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81828253 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81828271 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
81828293 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
81828312 GATTTAATTT
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
17 15 0.18
18 16 0.19
19 32 0.39
22 8 0.10
23 12 0.14
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:81834952 original size:27 final size:26
Alignment explanation
Indices: 81834896--81834952 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
81834886 TGTTACTAAG
* * *
81834896 ATGGGCTAGGCCCAATTGATTCTGTT
1 ATGGGCTAGACCCAAATGATTCTGTA
81834922 ATGGGCTATGACCCAAATGATAT-TGTA
1 ATGGGCTA-GACCCAAATGAT-TCTGTA
81834949 ATGG
1 ATGG
81834953 CCTTTGGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 8 0.31
27 17 0.65
28 1 0.04
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (26 bp):
ATGGGCTAGACCCAAATGATTCTGTA
Found at i:81837790 original size:35 final size:35
Alignment explanation
Indices: 81837751--81837820 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
81837741 TGCGAGGTAA
81837751 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
81837786 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
81837821 AACACTTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (35 bp):
GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
Done.