Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 246 of 332
Found at i:81843220 original size:29 final size:28
Alignment explanation
Indices: 81843175--81843229 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
81843165 AAGTTATACC
81843175 AATTTGGCCTCGAGCCATGAATATCAGCT
1 AATTTGGCCTCGAGCCATG-ATATCAGCT
* *
81843204 AATTTGGCTTCGGGCCATGATATCAG
1 AATTTGGCCTCGAGCCATGATATCAG
81843230 TATTTCGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (28 bp):
AATTTGGCCTCGAGCCATGATATCAGCT
Found at i:81844961 original size:131 final size:129
Alignment explanation
Indices: 81844795--81845037 Score: 344
Period size: 131 Copynumber: 1.9 Consensus size: 129
81844785 TTTAGAGAGT
* *
81844795 ATGAGTGAAATTCTAAAGGAATATTCGATTATTTTG-AACAAGCAGGAAATCGCAACCCAGCACG
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAG--GGAAATCGCAACCCAGCACG
* *
81844859 ATAGGGCAGGATTCCCCGAATCACCAAATATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAAG
64 ATAGAGCAGGATT-CCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAAG
81844924 AC
128 AC
*
81844926 ATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAAAAAAGGGAAATCGCAACCCAGCACGAT
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAGGGAAATCGCAACCCAGCACGAT
* ** ** * *
81844991 AGAGCATGATTCTTGAATTGCCAAACATCGAGTATTGCCTTTGTTTT
66 AGAGCAGGATTCCCGAATCACCAAACATCGAGTATTACCTTCGTTTT
81845038 AGAGAATTTT
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
129 29 0.29
130 31 0.31
131 34 0.34
132 5 0.05
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (129 bp):
ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAGGGAAATCGCAACCCAGCACGAT
AGAGCAGGATTCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAAGAC
Found at i:81845066 original size:131 final size:130
Alignment explanation
Indices: 81844800--81845051 Score: 312
Period size: 129 Copynumber: 1.9 Consensus size: 130
81844790 AGAGTATGAG
* * *
81844800 TGAAATTCTAAAGGAATATTCGATTATTTTGAACAAGCAGGAAATCGCAACCCAGCACGATAGGG
1 TGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAG-AGGAAATCGCAACCCAGCACGATAGAG
* * *
81844865 CAGGATTCCCCGAATCACCAAATATCGAGTATTACCTTCGTTTTGAAGAGTTATTAAAGACATGA
65 CAGGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAATTATTAAAGACATAA
*
81844930 G
130 A
*
81844931 TGAAATTCCAAAGGAATATTCGATTGTTTTGAAAAA-AGGGAAATCGCAACCCAGCACGATAGAG
1 TGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAGA-GGAAATCGCAACCCAGCACGATAGAG
* ** ** * * *
81844995 CATGATT-CTTGAATTGCCAAACATCGAGTATTGCCTTTGTTTT-AGAGAATTTTTAAA
65 CAGGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGA-AGAATTATTAAA
81845052 AGAATAATTA
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
128 1 0.01
129 40 0.38
130 31 0.30
131 33 0.31
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (130 bp):
TGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAGAGGAAATCGCAACCCAGCACGATAGAGC
AGGATTCCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAATTATTAAAGACATAAA
Found at i:81847500 original size:19 final size:20
Alignment explanation
Indices: 81847466--81847506 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 20
81847456 ACTGTTATAA
81847466 TATTTTTTGTGATTTGTTTTT
1 TATTTTTTGT-ATTTGTTTTT
81847487 TATTTTTTGT-TTTGTTTTT
1 TATTTTTTGTATTTGTTTTT
81847506 T
1 T
81847507 GTCTGTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
21 10 0.50
ACGTcount: A:0.07, C:0.00, G:0.12, T:0.80
Consensus pattern (20 bp):
TATTTTTTGTATTTGTTTTT
Found at i:81848061 original size:45 final size:44
Alignment explanation
Indices: 81847997--81848197 Score: 145
Period size: 45 Copynumber: 4.5 Consensus size: 44
81847987 TTTACTTCAT
* *
81847997 TGCAACTTCAAGAAGACAAGACTCGCCATCTTCGATCTGCTCCAC
1 TGCAACTTCAGGGAGACAAGA-TCGCCATCTTCGATCTGCTCCAC
* * * *
81848042 TGCAACTTCAGGGAGACAAGATCTACAATCTTC-AGCCTACTCCAC
1 TGCAACTTCAGGGAGACAAGATC-GCCATCTTCGA-TCTGCTCCAC
* * * * * **** ** *
81848087 TACAAATTTAGGGAGATAAGGT-GGTGGCTTAAATCTGCTTCAC
1 TGCAACTTCAGGGAGACAAGATCGCCATCTTCGATCTGCTCCAC
* * *
81848130 TGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCAT
1 TGCAACTTCAGGGAGACAAGA-TCGCCATCTTCGATCTGCTCCAC
* *
81848175 TGTAACTTCAGGGAGACGAGATC
1 TGCAACTTCAGGGAGACAAGATC
81848198 TGTGAATTCA
Statistics
Matches: 115, Mismatches: 36, Indels: 11
0.71 0.22 0.07
Matches are distributed among these distances:
43 25 0.22
44 7 0.06
45 83 0.72
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (44 bp):
TGCAACTTCAGGGAGACAAGATCGCCATCTTCGATCTGCTCCAC
Found at i:81848080 original size:133 final size:133
Alignment explanation
Indices: 81847918--81848198 Score: 409
Period size: 133 Copynumber: 2.1 Consensus size: 133
81847908 ACTACTGCTT
* ** * * * * *
81847918 AGGGAGACAAAATCTGTAATCTTCGGCCTACTCTACTACAACTTTAGGGAGCTAGGGTGGTGGCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
* *
81847983 TAAATTTACTTCATTGCAACTTCAAGAAGACAAGACTCGCCATCTTCGATCTGCTCCACTGCAAC
66 TAAATCTACTTCACTGCAACTTCAAGAAGACAAGACTCGCCATCTTCGATCTGCTCCACTGCAAC
81848048 TTC
131 TTC
81848051 AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
* * * * * *
81848116 TAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCATTGTAAC
66 TAAATCTACTTCACTGCAACTTCAAGAAGACAAGACTCGCCATCTTCGATCTGCTCCACTGCAAC
81848181 TTC
131 TTC
*
81848184 AGGGAGACGAGATCT
1 AGGGAGACAAGATCT
81848199 GTGAATTCAC
Statistics
Matches: 131, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (133 bp):
AGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAATTTAGGGAGATAAGGTGGTGGCT
TAAATCTACTTCACTGCAACTTCAAGAAGACAAGACTCGCCATCTTCGATCTGCTCCACTGCAAC
TTC
Found at i:81859923 original size:131 final size:129
Alignment explanation
Indices: 81859765--81860006 Score: 342
Period size: 131 Copynumber: 1.9 Consensus size: 129
81859755 TTTAGAGAGT
* *
81859765 ATGAGTGAAATTCTAAAGGAATATTCGATTATTTTG-AACAAGCAGGAAATCGCAACCCAGCACG
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAG--GGAAATCGCAACCCAGCACG
* * *
81859829 ATAGGGCAAGATTCCCCGAATCACCAAATATCGAGTATTACCTTTGTTTTGAAGAGTTTTTGAAG
64 ATAGAGCAAGATT-CCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTGAAG
81859894 AC
128 AC
* *
81859896 ATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAAAAAAGGGAAATCGTAACCCAGCACGAT
1 ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAGGGAAATCGCAACCCAGCACGAT
* ** * *
81859961 AGAGCATGATTCCCGAATTGCCAAACATCTAGTATTGCCTTCGTTT
66 AGAGCAAGATTCCCGAATCACCAAACATCGAGTATTACCTTCGTTT
81860007 AGAGAATTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
129 29 0.30
130 30 0.31
131 34 0.35
132 5 0.05
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (129 bp):
ATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAAAAAAGGGAAATCGCAACCCAGCACGAT
AGAGCAAGATTCCCGAATCACCAAACATCGAGTATTACCTTCGTTTTGAAGAGTTTTTGAAGAC
Found at i:81861992 original size:43 final size:43
Alignment explanation
Indices: 81861943--81862065 Score: 201
Period size: 43 Copynumber: 2.9 Consensus size: 43
81861933 GCTAAAACTT
*
81861943 TAAAGACCAGGACTTATAGCGGCACTTATATAAAAAACGCCGC
1 TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAACGCCGC
* * *
81861986 TAAAGACAAGGACTTATAGCGGCGCTTTTTTAAAAAACGCCGC
1 TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAACGCCGC
*
81862029 TAAAGACCAGGACTTATAGAGGCGCTTATATAAAAAA
1 TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAA
81862066 AAGCCGCGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.21
Consensus pattern (43 bp):
TAAAGACCAGGACTTATAGCGGCGCTTATATAAAAAACGCCGC
Found at i:81862108 original size:44 final size:44
Alignment explanation
Indices: 81862059--81862248 Score: 235
Period size: 43 Copynumber: 4.4 Consensus size: 44
81862049 GGCGCTTATA
** * *
81862059 TAAAAAAAAGCCGCGAAAAGTATTGTTCTTTAGTGGCG-TTTTT
1 TAAAAAAGCGCCGCTAAAAGTCTTGTTCTTTAGTGGCGTTTTTT
81862102 TAAAAAAGCGCCGCTAAAAGTCTTGTTCTTTAGTGGCGTTTTTT
1 TAAAAAAGCGCCGCTAAAAGTCTTGTTCTTTAGTGGCGTTTTTT
*
81862146 TAAAAAAGCGCCACTAAAAGTCTTGTTCTTTAGTGGCGTTTTTT
1 TAAAAAAGCGCCGCTAAAAGTCTTGTTCTTTAGTGGCGTTTTTT
* * * * * *
81862190 T-AAAAAGTGCCACTAAAAGTCCTAG-TCTTTAGCGTCGCTTTTT
1 TAAAAAAGCGCCGCTAAAAGT-CTTGTTCTTTAGTGGCGTTTTTT
*
81862233 TAAAACA-CGCCGCTAA
1 TAAAAAAGCGCCGCTAA
81862249 TTTGCCCAGT
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
43 75 0.57
44 56 0.43
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (44 bp):
TAAAAAAGCGCCGCTAAAAGTCTTGTTCTTTAGTGGCGTTTTTT
Found at i:81862150 original size:87 final size:87
Alignment explanation
Indices: 81862006--81862237 Score: 238
Period size: 87 Copynumber: 2.7 Consensus size: 87
81861996 GACTTATAGC
* * * * * *
81862006 GGCGCTTTTTTAAAAAA-CGCCGCT-AAAGACC-AGGACTTATAGAGGCGCTTATATAAAAAAAA
1 GGCG-TTTTTTAAAAAAGCGCCACTAAAAGTCCTA-GTCTT-TAGCGGCGCTTTTTTAAAAAAAA
*
81862068 GCCGCGAAAAGTATTGTTCTTTAGT
63 GCCACGAAAAGTATTGTTCTTTAGT
* * * * **
81862093 GGCGTTTTTTAAAAAAGCGCCGCTAAAAGT-CTTGTTCTTTAGTGGCGTTTTTTTAAAAAAGCGC
1 GGCGTTTTTTAAAAAAGCGCCACTAAAAGTCCTAG-TCTTTAGCGGCGCTTTTTTAAAAAAAAGC
* *
81862157 CACTAAAAGTCTTGTTCTTTAGT
65 CACGAAAAGTATTGTTCTTTAGT
* * *
81862180 GGCGTTTTTTTAAAAAGTGCCACTAAAAGTCCTAGTCTTTAGCGTCGCTTTTTTAAAA
1 GGCGTTTTTTAAAAAAGCGCCACTAAAAGTCCTAGTCTTTAGCGGCGCTTTTTTAAAA
81862238 CACGCCGCTA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
86 12 0.10
87 99 0.82
88 10 0.08
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (87 bp):
GGCGTTTTTTAAAAAAGCGCCACTAAAAGTCCTAGTCTTTAGCGGCGCTTTTTTAAAAAAAAGCC
ACGAAAAGTATTGTTCTTTAGT
Found at i:81862956 original size:13 final size:14
Alignment explanation
Indices: 81862935--81862963 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
81862925 AAAAACGACG
81862935 AATTAAAATATTAT
1 AATTAAAATATTAT
81862949 AATT-AAATATTAT
1 AATTAAAATATTAT
81862962 AA
1 AA
81862964 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTAAAATATTAT
Found at i:81868137 original size:18 final size:18
Alignment explanation
Indices: 81868114--81868150 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81868104 TATGTAAGTT
**
81868114 GTTATGTACGTTATGTGA
1 GTTATGTAAATTATGTGA
81868132 GTTATGTAAATTATGTGA
1 GTTATGTAAATTATGTGA
81868150 G
1 G
81868151 AGAAGGTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (18 bp):
GTTATGTAAATTATGTGA
Found at i:81868867 original size:183 final size:183
Alignment explanation
Indices: 81868559--81868890 Score: 637
Period size: 183 Copynumber: 1.8 Consensus size: 183
81868549 CCTAGAACAG
81868559 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
81868624 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAATTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAATTGAACCAATAGTTGCAGGAGG
81868689 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
81868742 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATTTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
81868807 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAATTGAACCAATAGTTGCAGGAGG
*
81868872 AGTAGGAAGCAGTAACTGA
131 AGCAGGAAGCAGTAACTGA
81868891 TGCTGAATCT
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 146 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAATTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:81869023 original size:15 final size:16
Alignment explanation
Indices: 81868983--81869024 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
81868973 CGTAATTATA
81868983 TTTAATATTAAATACCT
1 TTTAAT-TTAAATACCT
*
81869000 TTTAA-TTAAATA-TT
1 TTTAATTTAAATACCT
81869014 TTTAATTTAAA
1 TTTAATTTAAA
81869025 AATAATGGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 6 0.26
15 12 0.52
17 5 0.22
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTAATTTAAATACCT
Found at i:81871860 original size:84 final size:83
Alignment explanation
Indices: 81871737--81871976 Score: 250
Period size: 84 Copynumber: 2.9 Consensus size: 83
81871727 CGTTTTTAAA
* * * * * ** *
81871737 AAAAAAAAACGCCGCTAATCCTCTAAATTTTC-ATATAAAACGACGCCGTTACGTTATACTTTTT
1 AAAAAAAAACGCCGCTACTCCCCTAAATATCCAAT-TAAAACGACGCCGTTACGTTAAACTGCTA
* *
81871801 TTTTCTTTTTGTGGCGTTTT
65 TGTT-TTTTTGTGGCATTTT
* * *
81871821 AAAAAAAAACGCCGGTACTCCCCTAAAAATCCAATTAAAACGACGCCGTTTTCGTTAAACTGCTA
1 AAAAAAAAACGCCGCTACTCCCCTAAATATCCAATTAAAACGACGCCG-TTACGTTAAACTGCTA
81871886 TGTTTTTTTGTGGCATTTT
65 TGTTTTTTTGTGGCATTTT
**** * * *
81871905 TTCGAAAAACGCCGCTACTCTCCTAAATATCCAATTAAAACGAAGCCGTTTTCGTT-AACTGCTA
1 AAAAAAAAACGCCGCTACTCCCCTAAATATCCAATTAAAACGACGCCG-TTACGTTAAACTGCTA
81871969 TGTTTTTT
65 TGTTTTTT
81871977 GCGGCTTTTT
Statistics
Matches: 133, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
83 16 0.12
84 101 0.76
85 16 0.12
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (83 bp):
AAAAAAAAACGCCGCTACTCCCCTAAATATCCAATTAAAACGACGCCGTTACGTTAAACTGCTAT
GTTTTTTTGTGGCATTTT
Found at i:81872445 original size:14 final size:14
Alignment explanation
Indices: 81872428--81872456 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81872418 TACCCCAAGC
81872428 CATAAACCCTAAAT
1 CATAAACCCTAAAT
81872442 CATAAACCCTAAAT
1 CATAAACCCTAAAT
81872456 C
1 C
81872457 TTAGACCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (14 bp):
CATAAACCCTAAAT
Found at i:81872746 original size:14 final size:14
Alignment explanation
Indices: 81872729--81872761 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
81872719 ATAGTTAACT
81872729 CATAAACCTTAAAC
1 CATAAACCTTAAAC
81872743 CATAAACCTTAAAC
1 CATAAACCTTAAAC
81872757 CATAA
1 CATAA
81872762 TGATAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:81872982 original size:41 final size:41
Alignment explanation
Indices: 81872920--81873144 Score: 267
Period size: 41 Copynumber: 5.5 Consensus size: 41
81872910 TTATATGACT
81872920 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
** * *
81872961 TTTAGCGGCGTTTTAATAAAAGCGTCGTTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* ** * *
81873002 TTCAGCGATGTTTTACCAAAAACGCCGCTAATGCTCAGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
*
81873043 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * * *
81873083 TTTAGCGGCGCTTTTTACTAAAA-CGCCGCTATTGCTCT-ATT
1 TTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* *
81873124 TTTAGTGGCGTCTTACCAAAA
1 TTTAGCGGCGTTTTACCAAAA
81873145 ACACCACTAT
Statistics
Matches: 157, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
39 9 0.06
40 12 0.08
41 126 0.80
42 10 0.06
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:81875781 original size:42 final size:42
Alignment explanation
Indices: 81875735--81875832 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
81875725 TCCTAGACGT
* *
81875735 GGTCTTACATGTAATCAAA-ATTGATG-CCACTGTCCTAGATAG
1 GGTCTTACATGTAATCAAATA-TGATGTCCA-TGTCCCAGACAG
* * * *
81875777 GGTCTTACACGAAATCAAATATGATGTCGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATATGATGTCCATGTCCCAGACAG
81875819 GGTCTTACATGTAA
1 GGTCTTACATGTAA
81875833 AACAGAAGTC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
42 43 0.93
43 3 0.07
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATATGATGTCCATGTCCCAGACAG
Found at i:81880624 original size:5 final size:5
Alignment explanation
Indices: 81880614--81880639 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
81880604 ATTTCTATAC
81880614 TAATT TAATT TAATT TAATT TAATT T
1 TAATT TAATT TAATT TAATT TAATT T
81880640 TATGTATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TAATT
Found at i:81883281 original size:22 final size:21
Alignment explanation
Indices: 81883251--81883316 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
81883241 TACAAATTAA
81883251 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
81883273 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
81883294 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
81883313 ATCT
1 ATCT
81883317 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:81883303 original size:19 final size:19
Alignment explanation
Indices: 81883268--81883329 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
81883258 AGATTACAAG
81883268 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
81883289 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81883308 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81883327 ATC
1 ATC
81883330 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:81883898 original size:44 final size:41
Alignment explanation
Indices: 81883849--81884007 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 41
81883839 ACTAAAGTTT
*
81883849 GCGGCGTTTATTTGAAAAAACGCCGCTAAAGATCAAGACCTTTA
1 GCGGCGTTT-TTT--AAAAACGCCACTAAAGATCAAGACCTTTA
** *
81883893 GCGGCGCTTTCCCTACAAACGCCACTAAAGATCAAGACCTTTA
1 GCGGCG-TTT-TTTAAAAACGCCACTAAAGATCAAGACCTTTA
* * * *
81883936 GCGGCACTTTTCCTATAAACGCCACTAAAGATCACGACCTTTA
1 GCGGC-GTTTT-TTAAAAACGCCACTAAAGATCAAGACCTTTA
*
81883979 GCGGCGCTTTTCTCAAAAACGCCACTAAA
1 GCGGCG-TTTT-TTAAAAACGCCACTAAA
81884008 AGTCATGAAA
Statistics
Matches: 98, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
43 88 0.90
44 6 0.06
45 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (41 bp):
GCGGCGTTTTTTAAAAACGCCACTAAAGATCAAGACCTTTA
Found at i:81883914 original size:43 final size:43
Alignment explanation
Indices: 81883866--81884007 Score: 205
Period size: 43 Copynumber: 3.3 Consensus size: 43
81883856 TTATTTGAAA
*
81883866 AAACGCCGCTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
1 AAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
* * *
81883909 AAACGCCACTAAAGATCAAGACCTTTAGCGGCACTTTTCCTAT
1 AAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
* * *
81883952 AAACGCCACTAAAGATCACGACCTTTAGCGGCGCTTT-TCTCAA
1 AAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTCCCT-AC
81883995 AAACGCCACTAAA
1 AAACGCCACTAAA
81884008 AGTCATGAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 2 0.02
43 88 0.98
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.22
Consensus pattern (43 bp):
AAACGCCACTAAAGATCAAGACCTTTAGCGGCGCTTTCCCTAC
Found at i:81891411 original size:18 final size:19
Alignment explanation
Indices: 81891385--81891423 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
81891375 GGTCTAGAAA
*
81891385 AATACAAAT-AAACAAAAT
1 AATAAAAATAAAACAAAAT
81891403 AATAAAAATAAAACAAAAT
1 AATAAAAATAAAACAAAAT
81891422 AA
1 AA
81891424 AAATAAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (19 bp):
AATAAAAATAAAACAAAAT
Found at i:81891424 original size:16 final size:17
Alignment explanation
Indices: 81891382--81891430 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
81891372 AAAGGTCTAG
*
81891382 AAAAATACAAATAAACA
1 AAAAATAAAAATAAACA
81891399 AAATAATAAAAATAAA-A
1 AAA-AATAAAAATAAACA
*
81891416 CAAAATAAAAATAAA
1 AAAAATAAAAATAAA
81891431 TGGACTCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 12 0.41
17 6 0.21
18 11 0.38
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAATAAAAATAAACA
Found at i:81897406 original size:8 final size:8
Alignment explanation
Indices: 81897383--81897434 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
81897373 AAGCAAATAA
81897383 AAGAAAATT
1 AAGAAAA-T
*
81897392 TAGAAAAT
1 AAGAAAAT
81897400 AAGAAAAT
1 AAGAAAAT
*
81897408 AAGAAAAA
1 AAGAAAAT
81897416 AAG-AAA-
1 AAGAAAAT
81897422 AAGAAAAAT
1 AAG-AAAAT
81897431 AAGA
1 AAGA
81897435 TGAAAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
6 3 0.08
7 3 0.08
8 22 0.59
9 9 0.24
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.12
Consensus pattern (8 bp):
AAGAAAAT
Found at i:81897433 original size:23 final size:22
Alignment explanation
Indices: 81897403--81897452 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
81897393 AGAAAATAAG
81897403 AAAATAAGAAAAAAAGAAAAAGA
1 AAAATAAG-AAAAAAGAAAAAGA
** *
81897426 AAAATAAGATGAAAGAAAAATA
1 AAAATAAGAAAAAAGAAAAAGA
81897448 AAAAT
1 AAAAT
81897453 GGCTAAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAATAAGAAAAAAGAAAAAGA
Found at i:81897440 original size:16 final size:15
Alignment explanation
Indices: 81897395--81897448 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
81897385 GAAAATTTAG
81897395 AAAATAAGAAAATAAGA
1 AAAATAAG-AAA-AAGA
81897412 AAAA-AAGAAAAAGA
1 AAAATAAGAAAAAGA
*
81897426 AAAATAAGATGAAAGA
1 AAAATAAGA-AAAAGA
81897442 AAAATAA
1 AAAATAA
81897449 AAATGGCTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
14 8 0.24
15 7 0.21
16 15 0.44
17 4 0.12
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (15 bp):
AAAATAAGAAAAAGA
Found at i:81899976 original size:33 final size:33
Alignment explanation
Indices: 81899812--81899977 Score: 197
Period size: 33 Copynumber: 5.0 Consensus size: 33
81899802 TCAACATAAG
* * * *
81899812 TGATTGGAACATCTATAAAGGCAACTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* * * *
81899845 TGATTGGAACATCTATCAAGGTAGCTCCATAAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
*
81899878 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* * *
81899911 TGGTTGGAACATTTATCAGCGCAGCTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* **
81899944 TGATTGGAGCATCTATCAGGGCATTTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
81899977 T
1 T
81899978 CTGTTTGCCT
Statistics
Matches: 112, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 112 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAT
Found at i:81905815 original size:13 final size:14
Alignment explanation
Indices: 81905797--81905832 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
81905787 CTATGTGTTC
81905797 TTTATTTTATTTT-
1 TTTATTTTATTTTA
81905810 TTTATTTTATTTTA
1 TTTATTTTATTTTA
81905824 TTCTATTTT
1 TT-TATTTT
81905833 CACAAATTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 13 0.62
14 2 0.10
15 6 0.29
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:81910834 original size:26 final size:26
Alignment explanation
Indices: 81910805--81910860 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
81910795 TGATACAAAT
81910805 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81910831 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81910857 TGAT
1 TGAT
81910861 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81914452 original size:26 final size:26
Alignment explanation
Indices: 81914423--81914530 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
81914413 TGATACAAAT
81914423 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81914449 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81914475 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81914501 TAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81914527 TGAT
1 TGAT
81914531 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81916080 original size:27 final size:26
Alignment explanation
Indices: 81916042--81916188 Score: 156
Period size: 27 Copynumber: 5.4 Consensus size: 26
81916032 ATGCAACAAT
81916042 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTG-TCTGGTGGCTCTGCCACATA
* *
81916069 TATTTGTCCTGGTGGCTATGCCACA-A
1 TATCTGT-CTGGTGGCTCTGCCACATA
81916095 TTATCTGATCTGGTGGCTCTGCCACATA
1 -TATCTG-TCTGGTGGCTCTGCCACATA
81916123 TATCTGTTCTGGTGGCTCTGCCACGAT-
1 TATCTG-TCTGGTGGCTCTGCCAC-ATA
* *
81916150 TATCTGTATCTGGTGACTCTGTCACAT-
1 TATCTG--TCTGGTGGCTCTGCCACATA
81916177 TATCTGTTCTGG
1 TATCTG-TCTGG
81916189 CAGCCATGCT
Statistics
Matches: 105, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.07
27 79 0.75
28 19 0.18
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
TATCTGTCTGGTGGCTCTGCCACATA
Found at i:81916102 original size:54 final size:54
Alignment explanation
Indices: 81916020--81916188 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
81916010 TAGAGGAAGC
* * *
81916020 GTCCTAGTGGCTATGCAACAATTATCTGATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
81916074 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * *
81916128 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
*
81916182 GTTCTGG
1 GTCCTGG
81916189 CAGCCATGCT
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 88 0.83
55 18 0.17
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:81920945 original size:46 final size:46
Alignment explanation
Indices: 81920893--81921061 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
81920883 TGAGCATCCA
* *
81920893 AACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * * * *
81920939 AGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAGTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCG
* * *
81920986 AACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
*
81921032 ATCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
81921062 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.55
47 28 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:81921045 original size:93 final size:93
Alignment explanation
Indices: 81920886--81921056 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81920876 GGATGGTTGA
* * *
81920886 GCATCCAAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
81920951 TGAGTCCGAGTTCGTGAGATGTAAGTAG
66 TGAGTCCGAGTTCGTGAGATGTAAGTAG
* * * *
81920979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGATCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
81921044 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81921057 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAAGTAG
Found at i:81928503 original size:46 final size:46
Alignment explanation
Indices: 81928453--81928625 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
81928443 TGGTTGAGCA
81928453 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81928499 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
81928544 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81928592 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81928626 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81928609 original size:93 final size:93
Alignment explanation
Indices: 81928450--81928620 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81928440 GGATGGTTGA
* *
81928450 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
81928515 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81928543 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
81928608 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81928621 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81942128 original size:88 final size:86
Alignment explanation
Indices: 81941906--81942268 Score: 258
Period size: 87 Copynumber: 4.1 Consensus size: 86
81941896 TTGTTTCCAA
* ** * * *
81941906 ATTAAAAGTAAAA-AAAATCCGTTTC-GAGATTTATTTCCGCCTTTCAACGAATATTATTCCATT
1 ATTAAAATTAAAATAAAATATGTTTCAG-GATTTA-TTCCGCCGTTCAACGAATTTTATTCCAAT
* ** * * *
81941969 TTTTATTTTATTTCCAAATGGGAA
64 TTTGATTTTATTTAAAAACGAG-T
*
81941993 ATTAAAGTT-AAATAAAATTCAT-TTT-AGGATTTATTCC-CACGGTTCAACGAATTTTATTCCA
1 ATTAAAATTAAAATAAAA-T-ATGTTTCAGGATTTATTCCGC-C-GTTCAACGAATTTTATTCCA
*
81942054 ATTTTGGTTTTATTTATAAAACGAGT
62 ATTTTGATTTTATTTA-AAAACGAGT
* *
81942080 ATTAAAATTAAAATAAAATATGTTTCAGGATTTATTCCTGCCGTTCAAC-AGAGTTTATTCCAAA
1 ATTAAAATTAAAATAAAATATGTTTCAGGATTTATTCC-GCCGTTCAACGA-ATTTTATTCCAAT
*
81942144 TTTGATTTTATTTCCAAAAACAAGT
64 TTTGATTTTATTT--AAAAACGAGT
* * * ** * * * *
81942169 ATTAAAATTAAAATAAATTCTATTTTGGGATTTATTCTCGCCGTTTAATGGA-TTTATTAC-ATT
1 ATTAAAATTAAAATAAAATATGTTTCAGGATTTATTC-CGCCGTTCAACGAATTTTATTCCAATT
* * *
81942232 TTTATTTTCTTTCCAAAAACGAGAA
65 TTGATTTTATTT--AAAAACGAG-T
81942257 ATTAAAATTAAA
1 ATTAAAATTAAA
81942269 GACGTTTAAC
Statistics
Matches: 225, Mismatches: 33, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
85 1 0.00
86 10 0.04
87 82 0.36
88 79 0.35
89 50 0.22
90 3 0.01
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (86 bp):
ATTAAAATTAAAATAAAATATGTTTCAGGATTTATTCCGCCGTTCAACGAATTTTATTCCAATTT
TGATTTTATTTAAAAACGAGT
Found at i:81942202 original size:89 final size:87
Alignment explanation
Indices: 81941933--81942268 Score: 283
Period size: 88 Copynumber: 3.8 Consensus size: 87
81941923 TCCGTTTCGA
* * * *** *
81941933 GATTTATTTCC-GCCTTTCAACGAATATTATTCCATTTTTTATTTTATTTCCAAATGGGA-AATT
1 GATTTA-TTCCTGCCGTTCAACG-AT-TTATTCCAATTTTGATTTTATTTCCAAAAACGAGTATT
*
81941996 AAAGTT-AAATAAAATTC-ATTTTAG
63 AAAATTAAAAT-AAATTCTATTTTAG
** * *
81942020 GATTTATTCCCACGGTTCAACGAATTTTATTCCAATTTTGGTTTTATTT--ATAAAACGAGTATT
1 GATTTATTCCTGCCGTTCAACG-A-TTTATTCCAATTTTGATTTTATTTCCA-AAAACGAGTATT
* * * *
81942083 AAAATTAAAATAAAATATGTTTCAG
63 AAAATTAAAATAAATTCTATTTTAG
* *
81942108 GATTTATTCCTGCCGTTCAACAGAGTTTATTCCAAATTTGATTTTATTTCCAAAAACAAGTATTA
1 GATTTATTCCTGCCGTTCAAC-GA-TTTATTCCAATTTTGATTTTATTTCCAAAAACGAGTATTA
*
81942173 AAATTAAAATAAATTCTATTTTGG
64 AAATTAAAATAAATTCTATTTTAG
* * * * * *
81942197 GATTTATT-CTCGCCGTTTAATGGATTTATTAC-ATTTTTATTTTCTTTCCAAAAACGAGAAATT
1 GATTTATTCCT-GCCGTTCAA-CGATTTATTCCAATTTTGATTTTATTTCCAAAAACGAG-TATT
81942260 AAAATTAAA
63 AAAATTAAA
81942269 GACGTTTAAC
Statistics
Matches: 202, Mismatches: 35, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
85 1 0.00
86 8 0.04
87 70 0.35
88 72 0.36
89 50 0.25
90 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (87 bp):
GATTTATTCCTGCCGTTCAACGATTTATTCCAATTTTGATTTTATTTCCAAAAACGAGTATTAAA
ATTAAAATAAATTCTATTTTAG
Found at i:81944996 original size:21 final size:21
Alignment explanation
Indices: 81944972--81945053 Score: 62
Period size: 21 Copynumber: 3.9 Consensus size: 21
81944962 GTCCTTGGTC
81944972 CACACGGGC-GTGTGCCCCAGT
1 CACAC-GGCTGTGTGCCCCAGT
* * *
81944993 CACATGGCTGTATGCCTCTC-TT
1 CACACGGCTGTGTGCC-C-CAGT
* *
81945015 CACACAGGC-GCGTGCCTCAGT
1 CACAC-GGCTGTGTGCCCCAGT
81945036 CACACGGCTGTGTGCCCC
1 CACACGGCTGTGTGCCCC
81945054 TCCTCATACA
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
20 7 0.16
21 23 0.51
22 11 0.24
23 4 0.09
ACGTcount: A:0.15, C:0.38, G:0.27, T:0.21
Consensus pattern (21 bp):
CACACGGCTGTGTGCCCCAGT
Found at i:81945036 original size:43 final size:43
Alignment explanation
Indices: 81944972--81945066 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
81944962 GTCCTTGGTC
* * * * *
81944972 CACACGGGCGTGTGCCCCAGTCACATGGCTGTATGCCTCTCTT
1 CACACAGGCGCGTGCCCCAGTCACACGGCTGTATGCCCCTCCT
* *
81945015 CACACAGGCGCGTGCCTCAGTCACACGGCTGTGTGCCCCTCCT
1 CACACAGGCGCGTGCCCCAGTCACACGGCTGTATGCCCCTCCT
*
81945058 CATACAGGC
1 CACACAGGC
81945067 TTTTGATCTC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.16, C:0.38, G:0.25, T:0.21
Consensus pattern (43 bp):
CACACAGGCGCGTGCCCCAGTCACACGGCTGTATGCCCCTCCT
Found at i:81954774 original size:20 final size:20
Alignment explanation
Indices: 81954749--81954802 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
81954739 CCTCTCTGCA
81954749 TCACACGCCCGTGCCCATCG
1 TCACACGCCCGTGCCCATCG
*
81954769 TCACACGCCCGTGCCCGTCG
1 TCACACGCCCGTGCCCATCG
81954789 TCACACGCCCGTGC
1 TCACACGCCCGTGC
81954803 GCCGCCATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.13, C:0.50, G:0.22, T:0.15
Consensus pattern (20 bp):
TCACACGCCCGTGCCCATCG
Found at i:81956315 original size:4 final size:4
Alignment explanation
Indices: 81956306--81956337 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
81956296 AATCCTCTTG
81956306 TTTA TTTA TTTA TTTA TTTA TTTA TTTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTT
81956338 TTATTTTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:81956357 original size:7 final size:6
Alignment explanation
Indices: 81956326--81956367 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
81956316 TATTTATTTA
* * *
81956326 TTTA-T TTTATT TTTATT TTTCTT TTGATT TTTATT TTCATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
81956368 CAATTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:81959324 original size:13 final size:13
Alignment explanation
Indices: 81959306--81959330 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81959296 TTAAATTAGT
81959306 TAATTAGTTTAAA
1 TAATTAGTTTAAA
81959319 TAATTAGTTTAA
1 TAATTAGTTTAA
81959331 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:81980161 original size:33 final size:33
Alignment explanation
Indices: 81980119--81980268 Score: 185
Period size: 33 Copynumber: 4.5 Consensus size: 33
81980109 TCAACATACG
81980119 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
* * *
81980152 TGATTGGAACATCTATCGAGGCAACTTCATCAT
1 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
*
81980185 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAAGGCAGCTTCATCAA
* ** * * *
81980218 TGATTGTAACATCTAT-TGGGTCAGATTCATTAT
1 TGATTGGAACATCTATCAAGG-CAGCTTCATCAA
*
81980251 TGATTGGAAGATCTATCA
1 TGATTGGAACATCTATCA
81980269 GTGCTGCTTC
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
32 3 0.03
33 97 0.97
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (33 bp):
TGATTGGAACATCTATCAAGGCAGCTTCATCAA
Found at i:81980269 original size:66 final size:66
Alignment explanation
Indices: 81980119--81980279 Score: 227
Period size: 66 Copynumber: 2.4 Consensus size: 66
81980109 TCAACATACG
*
81980119 TGATTGGAACATCTATCAAGGCAGCTTCATCAATGATTGGAACATCTATCGAGGCAACTTCATCA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTGGAACATCTATCGAGGCAACTTCATCA
81980184 T
66 T
* *
81980185 TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTGTAACATCTATTG-GGTCAGA-TTCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTGGAACATCTATCGAGG-CA-ACTTCAT
*
81980248 TAT
64 CAT
* * *
81980251 TGATTGGAAGATCTATCAGTGCTGCTTCA
1 TGATTGGAACATCTATCAGGGCAGCTTCA
81980280 ACATTCTGTT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
65 2 0.02
66 83 0.97
67 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (66 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAATGATTGGAACATCTATCGAGGCAACTTCATCA
T
Found at i:81987871 original size:12 final size:12
Alignment explanation
Indices: 81987829--81987934 Score: 53
Period size: 12 Copynumber: 8.8 Consensus size: 12
81987819 TTTATCTTTG
81987829 TATATTAT-TTA
1 TATATTATATTA
*
81987840 T-TATTTTATTA
1 TATATTATATTA
*
81987851 TACA-T-TATTA
1 TATATTATATTA
81987861 TATATTATATTA
1 TATATTATATTA
* *
81987873 CATGCATTTTACTATA
1 TAT--ATTATA-T-TA
*
81987889 TATATTATTTTA
1 TATATTATATTA
*
81987901 TATATTAT-CTA
1 TATATTATATTA
*
81987912 TCATATTGT-TTA
1 T-ATATTATATTA
81987924 TATTATTATAT
1 TA-TATTATAT
81987935 ATTTTGTTTA
Statistics
Matches: 72, Mismatches: 12, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
10 13 0.18
11 11 0.15
12 32 0.44
13 2 0.03
14 9 0.12
15 1 0.01
16 4 0.06
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (12 bp):
TATATTATATTA
Found at i:81987941 original size:21 final size:22
Alignment explanation
Indices: 81987887--81987945 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 22
81987877 CATTTTACTA
81987887 TATATATTATT-TTATATATTATC
1 TATATATT-TTGTT-TATATTATC
81987910 TATCATA--TTGTTTATATTAT-
1 TAT-ATATTTTGTTTATATTATC
81987930 TATATATTTTGTTTAT
1 TATATATTTTGTTTAT
81987946 GAATTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 18 0.56
22 2 0.06
23 3 0.09
24 3 0.09
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (22 bp):
TATATATTTTGTTTATATTATC
Found at i:81988262 original size:16 final size:16
Alignment explanation
Indices: 81988221--81988258 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81988211 TAATATCTTT
* *
81988221 ATTTTTATTTTATTTG
1 ATTTATATTTTATATG
81988237 ATTTATATTTTATATG
1 ATTTATATTTTATATG
81988253 -TTTATA
1 ATTTATA
81988259 ATTTGCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
ATTTATATTTTATATG
Found at i:82000048 original size:44 final size:44
Alignment explanation
Indices: 81999998--82000628 Score: 893
Period size: 44 Copynumber: 14.3 Consensus size: 44
81999988 CACCGGTGAC
*
81999998 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* **
82000042 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATTGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
82000086 ATTTGACGTCTCTGTATTGTTAGAGAGTAGATCAAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
82000130 ATTTGGCATCTCTGTATTGTTAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * *
82000174 ATTTGGCGTCTCTTTATTATCAGAGAGCAGATAAAAGATAGTAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * *
82000218 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAATATAGCAT
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* *
82000262 ATTTGGTGTCTCTGTATTGTCATAGAGCAGATCAAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* **
82000306 ATTTGGCGTCTCTTTATTGTCAGAGAGCAGATCAAAGATAATAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * *
82000350 ATTTGGCATCTCTGTATTGTCAGAGAGTAGATCAAAGATAGCAT
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* *
82000394 ATTTGGCGTCTCTTTATTGTGAGAGAGCAGATCAAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
*
82000438 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * * *
82000482 ATTTGGCGTCTCTGTATTGTTAGAAAGTAGATCGAATATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* *
82000526 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
* * * *
82000570 ATTTGGTGTCTCTGTATTGTTAGAGAACAGATCAAAGATAGCTG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
*
82000614 ATTTGACGTCTCTGT
1 ATTTGGCGTCTCTGT
82000629 GTTGGTGGGG
Statistics
Matches: 518, Mismatches: 69, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 518 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAG
Found at i:82002239 original size:21 final size:20
Alignment explanation
Indices: 82002185--82002257 Score: 58
Period size: 23 Copynumber: 3.4 Consensus size: 20
82002175 CATTTTACTA
*
82002185 TATATATTAT-TTTATATTT
1 TATATATTTTGTTTATATTT
*
82002204 TATCTATCATATTGTTTATATTAT
1 TA--TAT-ATTTTGTTTATATT-T
82002228 TATATATTTTGTTTATGAATTT
1 TATATATTTTGTTTAT--ATTT
82002250 TATTATAT
1 TA-TATAT
82002258 GTTACATATT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
19 2 0.05
21 13 0.30
22 9 0.21
23 16 0.37
24 3 0.07
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (20 bp):
TATATATTTTGTTTATATTT
Found at i:82002561 original size:16 final size:16
Alignment explanation
Indices: 82002520--82002557 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
82002510 TAATATCTTT
* *
82002520 ATTTTTATTTTATTTG
1 ATTTATATTTTATATG
82002536 ATTTATATTTTATATG
1 ATTTATATTTTATATG
82002552 -TTTATA
1 ATTTATA
82002558 ATTTGCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
ATTTATATTTTATATG
Found at i:82012975 original size:27 final size:27
Alignment explanation
Indices: 82012936--82012989 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
82012926 GTGACCAAAA
82012936 TACCCCTAAAGGGAAAAATGACT-ATTT
1 TACCCCTAAAGGG-AAAATGACTGATTT
** *
82012963 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAAAGGGAAAATGACTGATTT
82012990 GTTGTAACAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (27 bp):
TACCCCTAAAGGGAAAATGACTGATTT
Found at i:82013865 original size:56 final size:56
Alignment explanation
Indices: 82013779--82013922 Score: 234
Period size: 56 Copynumber: 2.6 Consensus size: 56
82013769 AGTAAGACCA
* * *
82013779 TGGCATCGATTTCTGACTCCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* *
82013835 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCATGTTTATTACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
*
82013891 TGGCATCAATATGTGACTCTGATATATGTGTG
1 TGGCATCGATATGTGACTCTGATATATGTGTG
82013923 TAGAACCCAT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 82 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
Found at i:82013979 original size:17 final size:17
Alignment explanation
Indices: 82013957--82013991 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
82013947 TACAAAAATT
*
82013957 AAAAAATGAAATTAAAC
1 AAAAAATAAAATTAAAC
82013974 AAAAAATAAAATTAAAC
1 AAAAAATAAAATTAAAC
82013991 A
1 A
82013992 GTCCATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAATTAAAC
Found at i:82015373 original size:35 final size:35
Alignment explanation
Indices: 82015334--82015414 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 35
82015324 TATATAAAAA
*
82015334 ATTATTTATCGTATAT-TATTTTATATATT-TATATT
1 ATTATTTAT-GT-TATCTATTATATATATTATATATT
* *
82015369 ATTATGTTATGTTGTCTATTATATATATTATCTATT
1 ATTAT-TTATGTTATCTATTATATATATTATATATT
82015405 ATGTATTTAT
1 AT-TATTTAT
82015415 ATTTTATCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
34 2 0.05
35 19 0.49
36 15 0.38
37 3 0.08
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (35 bp):
ATTATTTATGTTATCTATTATATATATTATATATT
Found at i:82015437 original size:32 final size:32
Alignment explanation
Indices: 82015350--82015463 Score: 110
Period size: 32 Copynumber: 3.6 Consensus size: 32
82015340 TATCGTATAT
*
82015350 TATTTTATATAT-TTATATTATTATGTTATGTTG
1 TATTTTATATATATTAT-TTATTATG-TATGTTA
* * *
82015383 TCTATTATATATATTATCTATTATGTAT-TTA
1 TATTTTATATATATTATTTATTATGTATGTTA
82015414 TATTTTATCATATATTATTTATTATGT-TGTT-
1 TATTTTAT-ATATATTATTTATTATGTATGTTA
* *
82015445 TATCTTTATCTTTATTATT
1 TAT-TTTATATATATTATT
82015464 ATAATTTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
31 20 0.29
32 27 0.40
33 17 0.25
34 4 0.06
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.63
Consensus pattern (32 bp):
TATTTTATATATATTATTTATTATGTATGTTA
Found at i:82019818 original size:50 final size:51
Alignment explanation
Indices: 82019741--82019869 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
82019731 GACTATGGCA
* *
82019741 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
* *
82019792 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
* *
82019842 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
82019870 CTAATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 46 0.66
51 24 0.34
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
Found at i:82019883 original size:31 final size:31
Alignment explanation
Indices: 82019845--82019962 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
82019835 ACAAATGACA
*
82019845 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
82019876 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
82019907 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
82019938 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
82019963 AAGTGACAAG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:82020098 original size:46 final size:49
Alignment explanation
Indices: 82020031--82020136 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 49
82020021 TGCTACTGTA
* *
82020031 TAAGACCATATCTGGAATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGAATATGGCATCGATATGAGATATGTGATTACGTG
* *
82020077 TAAGACCATAGCT-GAGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGA-ATATGGCATCGATATGAGATATGTGATTACGTG
82020126 TAAGACCATAG
1 TAAGACCATAG
82020137 TTAAACTATG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
45 2 0.04
46 21 0.40
47 1 0.02
48 13 0.25
49 15 0.29
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (49 bp):
TAAGACCATAGCTGGAATATGGCATCGATATGAGATATGTGATTACGTG
Found at i:82030336 original size:39 final size:40
Alignment explanation
Indices: 82030259--82030365 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
82030249 TAGCTCCTCG
* * *
82030259 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
82030299 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
**
82030338 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
82030366 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:82030364 original size:79 final size:80
Alignment explanation
Indices: 82030265--82030432 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
82030255 CTCGTTCAAG
* * * ** * *
82030265 TGCCTTCGGGACATAGCCCGG-TTATATTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
82030328 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
82030344 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
82030409 AATAACTCGCACAAA
66 AATAACTCGCACAAA
*
82030424 TACCTTCGG
1 TGCCTTCGG
82030433 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
79 31 0.42
80 43 0.58
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:82030445 original size:40 final size:40
Alignment explanation
Indices: 82030302--82030432 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
82030292 TAACTCATTC
* *
82030302 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
82030342 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
82030382 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
82030422 AATACCTTCGG
1 AATGCCTTCGG
82030433 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.04
40 78 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:82030445 original size:80 final size:80
Alignment explanation
Indices: 82030305--82030485 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
82030295 CTCATTCAAT
* * *
82030305 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
*
82030369 AGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
82030384 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
82030447 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
* *
82030465 GCCTTCGGGAATTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
82030486 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:82038162 original size:39 final size:40
Alignment explanation
Indices: 82038085--82038231 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
82038075 TAGCTCCTCG
* * *
82038085 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
82038125 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
82038164 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
82038204 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
82038232 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:82038242 original size:80 final size:80
Alignment explanation
Indices: 82038131--82038311 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
82038121 CTCATTCAAT
* * *
82038131 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
82038194 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
82038210 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
82038274 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
82038291 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
82038312 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:82038271 original size:40 final size:40
Alignment explanation
Indices: 82038128--82038311 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
82038118 TAACTCATTC
* *
82038128 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
82038168 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
82038208 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
82038248 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
82038289 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82038312 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:82041743 original size:44 final size:44
Alignment explanation
Indices: 82041607--82041969 Score: 452
Period size: 44 Copynumber: 8.3 Consensus size: 44
82041597 TGTTTACAAG
* *
82041607 GAGCAGATCGAAGATAGCAAATTTGGCATCTTTGTA-TGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
82041650 GAGCAGATCGAAGATAGCAG--TTGGCATCTCT-TATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * * *
82041691 AAGTAGATCAAAGATAGCAGATTTGGCATCTTTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * *
82041735 GAGCAGATCGAAGATAGAAGATTTGGCATCTCTATATTGCCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* *
82041779 GAACAGATCGAAGATAGCAGATTTGGCATCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
*
82041823 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
* * *
82041867 GAGCAGATCGAAGATAGTAGATTTGGCATCT-TCGTATT-TAATAA
1 GAGCAGATCGAAGATAGCAGATTTGGCATCTCT-GTATTGTCA-GA
* * * * * *
82041911 GGAGCAAATCCAAGA-AGTAGATTTGGCATCTCCGTATTGACAGG
1 -GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
*
82041955 GAGCAGATCCAAGAT
1 GAGCAGATCGAAGAT
82041970 GATTTGGCAT
Statistics
Matches: 281, Mismatches: 29, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
40 2 0.01
41 34 0.12
43 45 0.16
44 187 0.67
45 13 0.05
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGA
Found at i:82042009 original size:84 final size:84
Alignment explanation
Indices: 82041884--82042127 Score: 291
Period size: 84 Copynumber: 2.9 Consensus size: 84
82041874 TCGAAGATAG
** **
82041884 TAGATTTGGCATCTTCGTATTTAATAAGGAGCAAATCCAAGAAGTAGATTTGGCATCTCCGTA-T
1 TAGATTTGGCATCTTCGTATTCGACGAGGAG-AAATCCAAGAAGTAGATTTGGCATCTCCGTATT
82041948 TGACAGGGAGCAGATCCAAGA
65 TGAC-GGGAGCAGATCCAAGA
*
82041969 T-GATTTGGCATCTTCGTATTCGACGAGGAGTAAATCCAAGAAGTAGATTTGGCATCCCCGTATT
1 TAGATTTGGCATCTTCGTATTCGACGAGGAG-AAATCCAAGAAGTAGATTTGGCATCTCCGTATT
*
82042033 TGACGGGGGCAGATCCAAGATGA
65 TGACGGGAGCAGATCC-A-A-GA
* * *
82042056 TAGATTTGGCATCTCCATATTCGACGGAGGCA-AAA-CCAAGAAG-ATGATTTGGCATCTCTGTA
1 TAGATTTGGCATCTTCGTATTCGAC-GAGG-AGAAATCCAAGAAGTA-GATTTGGCATCTCCGTA
82042118 TTTGACGGGA
63 TTTGACGGGA
82042128 TCAAATCGAA
Statistics
Matches: 139, Mismatches: 12, Indels: 14
0.84 0.07 0.08
Matches are distributed among these distances:
84 66 0.47
85 7 0.05
86 2 0.01
87 35 0.25
88 24 0.17
89 4 0.03
90 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (84 bp):
TAGATTTGGCATCTTCGTATTCGACGAGGAGAAATCCAAGAAGTAGATTTGGCATCTCCGTATTT
GACGGGAGCAGATCCAAGA
Found at i:82042021 original size:44 final size:44
Alignment explanation
Indices: 82041797--82042139 Score: 253
Period size: 44 Copynumber: 7.9 Consensus size: 44
82041787 CGAAGATAGC
** * * * *
82041797 AGATTTGGCATCTCTATATT-GTC-AGAGAGCAGATCGAAGATAGC
1 AGATTTGGCATCTCCGTATTCGACGAG-GAGCAAATCCAAGA-AGT
* * * * * *
82041841 AGATTTGGCATCTCTGTATT-GTCAAAGAGCAGATCGAAGATAGT
1 AGATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGA-AGT
* ** **
82041885 AGATTTGGCATCTTCGTATTTAATAAGGAGCAAATCCAAGAAGT
1 AGATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGAAGT
*
82041929 AGATTTGGCATCTCCGTATT-GAC-AGGGAGCAGATCCAAG-A-T
1 AGATTTGGCATCTCCGTATTCGACGA-GGAGCAAATCCAAGAAGT
* *
82041970 -GATTTGGCATCTTCGTATTCGACGAGGAGTAAATCCAAGAAGT
1 AGATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGAAGT
* * * * *
82042013 AGATTTGGCATCCCCGTATTTGACG-GGGGCAGATCCAAGATGAT
1 AGATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGAAG-T
* *
82042057 AGATTTGGCATCTCCATATTCGAC--GGAGGCAAAACCAAGAAG-
1 AGATTTGGCATCTCCGTATTCGACGAGGA-GCAAATCCAAGAAGT
* * * *
82042099 ATGATTTGGCATCTCTGTATTTGACG-GGATCAAATCGAAGA
1 A-GATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGA
82042140 CATAACAGAT
Statistics
Matches: 249, Mismatches: 38, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
40 18 0.07
41 16 0.06
42 5 0.02
43 59 0.24
44 136 0.55
45 15 0.06
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCTCCGTATTCGACGAGGAGCAAATCCAAGAAGT
Found at i:82042095 original size:128 final size:130
Alignment explanation
Indices: 82041877--82042112 Score: 293
Period size: 128 Copynumber: 1.8 Consensus size: 130
82041867 GAGCAGATCG
**
82041877 AAGATAGTAGATTTGGCATCTTCGTATTTAATAAGGAGCAAATCCAAGAAGTAGATTTGGCATCT
1 AAGATAGTAGATTTGGCATCCCCGTATTTAATAAGGAGCAAATCCAAGAAGTAGATTTGGCATCT
* * *
82041942 CCGTATTGACAGGGAGCAGATCC-AAGATGATTTGGCATCTTCGTATTCGACGAGGAGTAAATCC
66 CCATATTGACAGGGAGCAAAACCAAAGATGATTTGGCATCTTCGTATTCGACGAGGAGTAAATCC
* ** * * *
82042006 AAGA-AGTAGATTTGGCATCCCCGTATTTGA-CGGGGGCAGATCCAAGATGATAGATTTGGCATC
1 AAGATAGTAGATTTGGCATCCCCGTATTTAATAAGGAGCAAATCCAAGAAG-TAGATTTGGCATC
82042069 TCCATATTCGAC--GGAGGCAAAACCAAGAAGATGATTTGGCATCT
65 TCCATATT-GACAGGGA-GCAAAACC-A-AAGATGATTTGGCATCT
82042113 CTGTATTTGA
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
127 17 0.19
128 49 0.54
129 7 0.08
131 17 0.19
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (130 bp):
AAGATAGTAGATTTGGCATCCCCGTATTTAATAAGGAGCAAATCCAAGAAGTAGATTTGGCATCT
CCATATTGACAGGGAGCAAAACCAAAGATGATTTGGCATCTTCGTATTCGACGAGGAGTAAATCC
Found at i:82042220 original size:79 final size:78
Alignment explanation
Indices: 82042096--82042274 Score: 207
Period size: 80 Copynumber: 2.3 Consensus size: 78
82042086 CAAAACCAAG
* * * * * **
82042096 AAGATGATTTGGCATCTCTGTATTTGACGGGATCAAATCGAAGACA-TAACAGATCTAACCTTTG
1 AAGATGATTTGGCATCTCTGTAATGGACGAGAGCAAATCAAAGACATTAACAGATCTAACCTTCA
*
82042160 TCGAGGCAGATCC
66 TCAAGGCAGATCC
** *
82042173 AAGATGATTTGGACATCTCTGTAATGGACGCAGAGCAAATCAAAGACATTAGTAGATCTGACCTT
1 AAGATGATTTGG-CATCTCTGTAATGGACG-AGAGCAAATCAAAGACATTAACAGATCTAACCTT
* *
82042238 CATCAAGGCTGATTC
64 CATCAAGGCAGATCC
*
82042253 AAGATGATTTGGCGTCTCTGTA
1 AAGATGATTTGGCATCTCTGTA
82042275 TTCAACGGGG
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
77 12 0.14
78 15 0.18
79 23 0.27
80 35 0.41
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (78 bp):
AAGATGATTTGGCATCTCTGTAATGGACGAGAGCAAATCAAAGACATTAACAGATCTAACCTTCA
TCAAGGCAGATCC
Found at i:82042288 original size:79 final size:78
Alignment explanation
Indices: 82042096--82042297 Score: 217
Period size: 79 Copynumber: 2.6 Consensus size: 78
82042086 CAAAACCAAG
* * **
82042096 AAGATGATTTGGCATCTCTGTATTTGAC-GGGATCAAATCGAAGACATAACAGATCTAACCTTTG
1 AAGATGATTTGGCATCTCTGTATTCGACGGGGAGCAAATCGAAGACATAACAGATCTAACCTTCA
*
82042160 TCGAGGCAGATCC
66 TCAAGGCAGATCC
* * ** * ** *
82042173 AAGATGATTTGGACATCTCTGTAATGGACGCAGAGCAAATCAAAGACATTAGTAGATCTGACCTT
1 AAGATGATTTGG-CATCTCTGTATTCGACGGGGAGCAAATCGAAGACA-TAACAGATCTAACCTT
* *
82042238 CATCAAGGCTGATTC
64 CATCAAGGCAGATCC
* * *
82042253 AAGATGATTTGGCGTCTCTGTATTCAACGGGGAGCAGATCGAAGA
1 AAGATGATTTGGCATCTCTGTATTCGACGGGGAGCAAATCGAAGA
82042298 ACTCAAGACT
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
77 12 0.12
78 14 0.14
79 39 0.39
80 35 0.35
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
AAGATGATTTGGCATCTCTGTATTCGACGGGGAGCAAATCGAAGACATAACAGATCTAACCTTCA
TCAAGGCAGATCC
Found at i:82043058 original size:16 final size:15
Alignment explanation
Indices: 82043039--82043068 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82043029 GATATTTTGT
82043039 TTTTTGTTATTTTTCG
1 TTTTTGTT-TTTTTCG
82043055 TTTTTGTTTTTTTC
1 TTTTTGTTTTTTTC
82043069 AATACATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.03, C:0.07, G:0.10, T:0.80
Consensus pattern (15 bp):
TTTTTGTTTTTTTCG
Found at i:82043759 original size:21 final size:20
Alignment explanation
Indices: 82043721--82043787 Score: 57
Period size: 21 Copynumber: 3.4 Consensus size: 20
82043711 TCTAAATTTT
* * *
82043721 TTATTTATTTATTTTAAATA
1 TTATTTATTTACTATAAACA
82043741 TTATTTATTTTACTATAAACA
1 TTATTTA-TTTACTATAAACA
* * *
82043762 TTATTCATATA-TA-AAAAA
1 TTATTTATTTACTATAAACA
82043780 TTATTTAT
1 TTATTTAT
82043788 CATATATTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
18 11 0.28
19 2 0.05
20 10 0.26
21 16 0.41
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATTTATTTACTATAAACA
Found at i:82043816 original size:13 final size:14
Alignment explanation
Indices: 82043779--82043818 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
82043769 TATATAAAAA
82043779 ATTATTTATCA-TAT
1 ATTATTTAT-ATTAT
82043793 ATTATTT-TATTAT
1 ATTATTTATATTAT
82043806 A-TATTTATATTAT
1 ATTATTTATATTAT
82043819 GATGCTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.25
13 11 0.46
14 7 0.29
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTATTTATATTAT
Found at i:82043877 original size:20 final size:22
Alignment explanation
Indices: 82043789--82043880 Score: 64
Period size: 24 Copynumber: 4.1 Consensus size: 22
82043779 ATTATTTATC
*
82043789 ATATATTATTTTATTATATATTT
1 ATATATTA-TCTATTATATATTT
* * *
82043812 ATATTATGATGCTATGT-TGTCTATT
1 ATA-TATTAT-CTAT-TATATAT-TT
*
82043837 ATATATTATCTATTATGTATTT
1 ATATATTATCTATTATATATTT
*
82043859 ATATTTTATC-A-TATATATTT
1 ATATATTATCTATTATATATTT
82043879 AT
1 AT
82043881 TATGTTGTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
20 10 0.18
21 1 0.02
22 12 0.21
23 12 0.21
24 15 0.27
25 6 0.11
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (22 bp):
ATATATTATCTATTATATATTT
Found at i:82048826 original size:27 final size:27
Alignment explanation
Indices: 82048796--82049087 Score: 313
Period size: 27 Copynumber: 10.9 Consensus size: 27
82048786 AGTACTATCG
*
82048796 ATTTACAGAATTACCATTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCA
* *
82048823 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCA
* *
82048850 ATTTACAGAATTACTGCTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCA
* ** *
82048877 GTTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCA
82048904 ATTTACAGAATTA-C-TTTTACCCTCA
1 ATTTACAGAATTACCGTTTTACCCTCA
* * * **
82048929 GTTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCA
*
82048956 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCA
** * * *
82048983 ATTTGTAAAATTATCGTTTT-CCCTTA
1 ATTTACAGAATTACCGTTTTACCCTCA
*
82049009 ATTTACAGAATTACTAG-TTTACCCTCA
1 ATTTACAGAATTAC-CGTTTTACCCTCA
* * * *
82049036 GTTTACAAAATTATCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCA
*
82049063 ATTTACAGAATTACCATTTTACCCT
1 ATTTACAGAATTACCGTTTTACCCT
82049088 TGATTGTGAA
Statistics
Matches: 218, Mismatches: 42, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
25 21 0.10
26 18 0.08
27 179 0.82
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCA
Found at i:82049127 original size:27 final size:27
Alignment explanation
Indices: 82049097--82049291 Score: 250
Period size: 27 Copynumber: 7.2 Consensus size: 27
82049087 TTGATTGTGA
82049097 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
82049124 AATT-TTCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
82049151 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
82049178 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
82049205 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
82049232 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
82049259 AATTACTGAGATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
82049286 AATTAC
1 AATTAC
82049292 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 142 0.98
28 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:82049127 original size:107 final size:104
Alignment explanation
Indices: 82048802--82049101 Score: 252
Period size: 106 Copynumber: 2.8 Consensus size: 104
82048792 ATCGATTTAC
* * ***
82048802 AGAATTACCATTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGC
1 AGAATTA-C-TTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCAT
* * ** **
82048867 TTTACCCTC-AGTT-TACAGAATTA-CTATTTTA-CCCTCGATTTA
64 TTTACCCTCGATTTGTA-A-AATTATCGA---TACCCCTTAAGGTA
* * * *
82048909 CAGAATTACTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACCGTT
1 -AGAATTACTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATT
* ** **
82048974 TTACCCTCGATTTGTAAAATTATCGTTTTCCCTTAATTTA
65 TTACCCTCGATTTGTAAAATTATCGATACCCCTTAAGGTA
82049014 CAGAATTACTAGTTTACCCTCAGTTTACAAAATTA-TCGTTTTACCCTCGATTTACAGAATTACC
1 -AGAATTACT--TTTACCCTCAGTTTACAAAATTACT-GTTTTACCCTCGATTTACAGAATTACC
* *
82049078 ATTTTACCCTTGA-TTGTGAAATTA
62 ATTTTACCCTCGATTTGTAAAATTA
82049102 CTGAAATACC
Statistics
Matches: 168, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
104 1 0.01
105 19 0.11
106 75 0.45
107 64 0.38
108 9 0.05
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (104 bp):
AGAATTACTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
TACCCTCGATTTGTAAAATTATCGATACCCCTTAAGGTA
Found at i:82049198 original size:81 final size:81
Alignment explanation
Indices: 82049097--82049290 Score: 280
Period size: 81 Copynumber: 2.4 Consensus size: 81
82049087 TTGATTGTGA
* *
82049097 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACTGAAA
*
82049162 TACCCTTATAGGATAG
66 TACCCCTATAGGATAG
* * * *
82049178 AATTACCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACTGAAA
* *
82049243 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
* * *
82049259 AATTACTGAGATACCCTTGTAGGGTAAAATTA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTA
82049291 CCATTTTGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 99 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (81 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACTGAAA
TACCCCTATAGGATAG
Found at i:82049550 original size:26 final size:27
Alignment explanation
Indices: 82049495--82049570 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
82049485 GGAAGCGTTC
*
82049495 TGGTGGCTATGCCACAAATATCTGT-TT
1 TGGTGGCTCTGCCAC-AATATCTGTATT
*
82049522 TTGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGTATT
* *
82049549 TGGTGACTCTGTCACAATATCT
1 TGGTGGCTCTGCCACAATATCT
82049571 ATTGACCGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 9 0.21
27 34 0.79
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATT
Found at i:82049696 original size:22 final size:22
Alignment explanation
Indices: 82049668--82049719 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
82049658 TTAATGTCTC
82049668 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
82049690 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
82049712 CGTGCCAA
1 TGTGCCAA
82049720 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:82049897 original size:25 final size:25
Alignment explanation
Indices: 82049859--82049925 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 25
82049849 TATGGCTTTG
82049859 TGCCACATATTCTGTT-AGGTGGGTT-
1 TGCCACATA-TCTGTTCAGGT-GGTTC
*
82049884 TGCCACATTATCTGATTCTGGTGGTTC
1 TGCCACA-TATCTG-TTCAGGTGGTTC
82049911 TGCCACAATATCTGT
1 TGCCAC-ATATCTGT
82049926 ATCTGGTGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
25 11 0.31
26 9 0.25
27 15 0.42
28 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (25 bp):
TGCCACATATCTGTTCAGGTGGTTC
Found at i:82049906 original size:27 final size:28
Alignment explanation
Indices: 82049876--82049933 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
82049866 TATTCTGTTA
*
82049876 GGTGGGTT-TGCCACATTATCTG-ATTCT
1 GGTGGGTTCTGCCACAATATCTGTA-TCT
82049903 GGT-GGTTCTGCCACAATATCTGTATCT
1 GGTGGGTTCTGCCACAATATCTGTATCT
82049930 GGTG
1 GGTG
82049934 ACTTTGTCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.16, C:0.19, G:0.28, T:0.38
Consensus pattern (28 bp):
GGTGGGTTCTGCCACAATATCTGTATCT
Found at i:82050084 original size:6 final size:6
Alignment explanation
Indices: 82050075--82050225 Score: 116
Period size: 6 Copynumber: 24.8 Consensus size: 6
82050065 TTGCATTCAC
* * *
82050075 ATTCTG ATTCTG ATTCTG -TCACATA ATTCTG ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
82050124 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
82050173 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
82050221 ATTCT
1 ATTCT
82050226 CATTTTGGTT
Statistics
Matches: 115, Mismatches: 16, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
5 9 0.08
6 95 0.83
7 8 0.07
8 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:82050198 original size:61 final size:61
Alignment explanation
Indices: 82050075--82050214 Score: 185
Period size: 61 Copynumber: 2.3 Consensus size: 61
82050065 TTGCATTCAC
* **
82050075 ATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTGATTTTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTGATTCTAATACTAATACTG
* * * *
82050136 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTG-TTACTAATATTGATTCTG
1 ATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTGATT-CTAATACTAATACTG
82050197 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTCTG
82050215 ATTCTGATTC
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
60 4 0.06
61 66 0.94
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (61 bp):
ATTCTGATTCTGATTCTGTCACATAATTCTGATTCTGATTCTGATTCTAATACTAATACTG
Found at i:82053080 original size:22 final size:22
Alignment explanation
Indices: 82053029--82053071 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
82053019 ATGGAAGAAG
*
82053029 AATAA-AAGTAAAAATAAATAAT
1 AATAATAA-TAAAAACAAATAAT
82053051 AATAATAATAAAAACAAATAA
1 AATAATAATAAAAACAAATAA
82053072 ACTAAATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AATAATAATAAAAACAAATAAT
Found at i:82054061 original size:37 final size:37
Alignment explanation
Indices: 82053997--82054070 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
82053987 TTACAAGCCA
82053997 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
82054034 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
82054071 GACGTCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:82058546 original size:21 final size:21
Alignment explanation
Indices: 82058520--82058567 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
82058510 TCAAGGAACA
82058520 TTTCTATTACAAATTTTGATC
1 TTTCTATTACAAATTTTGATC
82058541 TTTCTATTACAAATTTTGATC
1 TTTCTATTACAAATTTTGATC
82058562 TTTCTA
1 TTTCTA
82058568 AATCACTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.04, T:0.54
Consensus pattern (21 bp):
TTTCTATTACAAATTTTGATC
Found at i:82074883 original size:18 final size:20
Alignment explanation
Indices: 82074848--82074886 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
82074838 GCATGTAAGT
82074848 ATGATTTTATACTGTTTTTG
1 ATGATTTTATACTGTTTTTG
82074868 ATGATTTT-TA-TGTTTTTG
1 ATGATTTTATACTGTTTTTG
82074886 A
1 A
82074887 AGGCGTTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
19 2 0.11
20 8 0.42
ACGTcount: A:0.21, C:0.03, G:0.15, T:0.62
Consensus pattern (20 bp):
ATGATTTTATACTGTTTTTG
Found at i:82075570 original size:40 final size:39
Alignment explanation
Indices: 82075504--82075690 Score: 173
Period size: 40 Copynumber: 4.8 Consensus size: 39
82075494 TAATTATACA
* ** **
82075504 TGATTGCACATACATGCCCCAATTTGTACTTTGGTACCCC
1 TGATTGCACATACGTG-CCCTGTTTGTACTTCAGTACCCC
* *
82075544 TGATTGCACATACGTGCCACTGTTTG---TTCGGTAACCC
1 TGATTGCACATACGTGCC-CTGTTTGTACTTCAGTACCCC
** * *
82075581 TGATCCCACATACGTGCCCTGCTTGTACTTCAGTACCCA
1 TGATTGCACATACGTGCCCTGTTTGTACTTCAGTACCCC
* * *
82075620 TGATTGCACATATGTGCCCATGCTTGTACTTCAGTACCCT
1 TGATTGCACATACGTGCCC-TGTTTGTACTTCAGTACCCC
* *
82075660 TGATTGCACATACGTACCCCTGTTTATACTT
1 TGATTGCACATACGT-GCCCTGTTTGTACTT
82075691 TAATAATTTC
Statistics
Matches: 122, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
36 6 0.05
37 25 0.20
39 26 0.21
40 62 0.51
41 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (39 bp):
TGATTGCACATACGTGCCCTGTTTGTACTTCAGTACCCC
Found at i:82075591 original size:37 final size:36
Alignment explanation
Indices: 82075536--82075606 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 36
82075526 TTTGTACTTT
* ** *
82075536 GGTACCCCTGATTGCACATACGTGCCACTGTTTGTTC
1 GGTAACCCTGATCCCACATACGTGCC-CTGCTTGTTC
82075573 GGTAACCCTGATCCCACATACGTGCCCTGCTTGT
1 GGTAACCCTGATCCCACATACGTGCCCTGCTTGT
82075607 ACTTCAGTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 7 0.23
37 23 0.77
ACGTcount: A:0.17, C:0.32, G:0.21, T:0.30
Consensus pattern (36 bp):
GGTAACCCTGATCCCACATACGTGCCCTGCTTGTTC
Found at i:82075678 original size:20 final size:20
Alignment explanation
Indices: 82075613--82075678 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
82075603 TTGTACTTCA
*
82075613 GTACCCATGATTGCACATAT
1 GTACCCATGATTGCACATAC
* * * *
82075633 GTGCCCATGCTTGTAC-TTC
1 GTACCCATGATTGCACATAC
*
82075652 AGTACCCTTGATTGCACATAC
1 -GTACCCATGATTGCACATAC
82075673 GTACCC
1 GTACCC
82075679 CTGTTTATAC
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.91
21 2 0.06
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (20 bp):
GTACCCATGATTGCACATAC
Found at i:82075740 original size:21 final size:21
Alignment explanation
Indices: 82075716--82075766 Score: 57
Period size: 24 Copynumber: 2.3 Consensus size: 21
82075706 AGTAAAATAA
82075716 AAGTTACATTCAATTGATGAT
1 AAGTTACATTCAATTGATGAT
* *
82075737 AAGTTAAAAGATTTAATTGATGAT
1 AAGTT---ACATTCAATTGATGAT
82075761 AAGTTA
1 AAGTTA
82075767 AAAGATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 6 0.24
24 19 0.76
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.37
Consensus pattern (21 bp):
AAGTTACATTCAATTGATGAT
Found at i:82075756 original size:24 final size:24
Alignment explanation
Indices: 82075727--82075775 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
82075717 AGTTACATTC
82075727 AATTGATGATAAGTTAAAAGATTT
1 AATTGATGATAAGTTAAAAGATTT
82075751 AATTGATGATAAGTTAAAAGATTT
1 AATTGATGATAAGTTAAAAGATTT
82075775 A
1 A
82075776 CTATGTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (24 bp):
AATTGATGATAAGTTAAAAGATTT
Found at i:82076597 original size:65 final size:65
Alignment explanation
Indices: 82076511--82076694 Score: 223
Period size: 65 Copynumber: 2.8 Consensus size: 65
82076501 TAGGGCATAC
** **
82076511 ATACTGACTTGCATCACACGGCCGAGGACAC-GCCCG-TC-TGCTAGGCCGTGTGAAAATTAAAG
1 ATACTGACTTGGGTCACACGGCCGACCACACAG-CCGTTCGT-CTA-GCCGTGTGAAAATTAAAG
82076573 AGT
63 AGT
*
82076576 ATATTGACTTGGGTCACACGGCCGACCACACAGCCGTTCGTCTAGCCGTGTGAAAATTAAAGAGT
1 ATACTGACTTGGGTCACACGGCCGACCACACAGCCGTTCGTCTAGCCGTGTGAAAATTAAAGAGT
* * *
82076641 ATACTGACTTGGGTCACATGGCCGACCACAAACCCGTGT-GTCTAGCCCGTGTGA
1 ATACTGACTTGGGTCACACGGCCGACCACACAGCCGT-TCGTCTAG-CCGTGTGA
82076695 CCTTCGAAAT
Statistics
Matches: 105, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
65 89 0.85
66 15 0.14
67 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (65 bp):
ATACTGACTTGGGTCACACGGCCGACCACACAGCCGTTCGTCTAGCCGTGTGAAAATTAAAGAGT
Found at i:82101197 original size:27 final size:27
Alignment explanation
Indices: 82101167--82101220 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82101157 TCATACAACC
* *
82101167 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
82101194 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
82101221 TTGCATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:82110432 original size:43 final size:42
Alignment explanation
Indices: 82110356--82110442 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 42
82110346 ACATGAATCG
* * *
82110356 CATCCATTATGAACTCAGACTTCTTAATGAGCTCGGATGCTCA
1 CATCCATAATGAACTCAGACCTCTCAATGAGCTCGGATGC-CA
*
82110399 CATCCATAATGAACTCTGACCTCTCAA-GAAGCTCGGATGCCA
1 CATCCATAATGAACTCAGACCTCTCAATG-AGCTCGGATGCCA
82110441 CA
1 CA
82110443 CATCTCACAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (42 bp):
CATCCATAATGAACTCAGACCTCTCAATGAGCTCGGATGCCA
Found at i:82117882 original size:15 final size:15
Alignment explanation
Indices: 82117847--82117888 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
82117837 TGAGGTTAGG
82117847 AGTTTTAGGGTT-TA
1 AGTTTTAGGGTTCTA
*
82117861 CGATTTTAGGGTTCTA
1 AG-TTTTAGGGTTCTA
82117877 AGTTTT-GGGTTC
1 AGTTTTAGGGTTC
82117889 ATGGTTCGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 7 0.29
15 14 0.58
16 3 0.12
ACGTcount: A:0.17, C:0.07, G:0.29, T:0.48
Consensus pattern (15 bp):
AGTTTTAGGGTTCTA
Found at i:82150983 original size:205 final size:205
Alignment explanation
Indices: 82150533--82151116 Score: 1008
Period size: 205 Copynumber: 2.8 Consensus size: 205
82150523 AAATCTGCTT
*
82150533 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
82150598 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
* **
82150663 GGATCTTGCTTCAGTGA-AATTATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAGT
131 GGATC-TCCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAGT
82150727 GGAGATGCCAGA
194 GGAGATGCCAGA
* *
82150739 CTTCAATTTGTTCTCTGACAATATAGAGATGTCAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
*
82150804 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
82150869 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAGTGG
131 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAGTGG
82150934 AGATGCCAGA
196 AGATGCCAGA
* *
82150944 CTTTAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGGTTTGCTTCATCGTAAACAC
1 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
82151009 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
* * * *
82151074 GGATCTTCTTTAGTATAAACATTTGAAGGTGAGCTCTGCTATG
131 GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATG
82151117 CTACGGCCTA
Statistics
Matches: 359, Mismatches: 18, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
204 1 0.00
205 229 0.64
206 129 0.36
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTT
GGATCTCCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCATCGAAGTGG
AGATGCCAGA
Found at i:82159661 original size:45 final size:45
Alignment explanation
Indices: 82159506--82159669 Score: 178
Period size: 45 Copynumber: 3.6 Consensus size: 45
82159496 ATTTGGGCAT
*
82159506 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGC
* *
82159550 CCGAACTCGTTGAGTTGAGTCCGAGTT--C-GTGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCGAAC---GC
*
82159595 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGC
*
82159642 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
82159670 GCTTATGGGC
Statistics
Matches: 102, Mismatches: 6, Indels: 23
0.78 0.05 0.18
Matches are distributed among these distances:
40 2 0.02
41 5 0.05
42 1 0.01
44 27 0.26
45 29 0.28
47 28 0.27
49 5 0.05
50 5 0.05
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGC
Found at i:82162577 original size:14 final size:15
Alignment explanation
Indices: 82162500--82162577 Score: 74
Period size: 14 Copynumber: 5.4 Consensus size: 15
82162490 GTATCTTGGG
*
82162500 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
82162515 TCT-TTTATTCTGGA
1 TTTCTTTATTCTGGA
*
82162529 TTT-TTTATTCTGGG
1 TTTCTTTATTCTGGA
*
82162543 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
82162558 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
82162572 TTTCTT
1 TTTCTT
82162578 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 35 0.67
15 15 0.29
16 2 0.04
ACGTcount: A:0.10, C:0.15, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:82170646 original size:18 final size:17
Alignment explanation
Indices: 82170620--82170653 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
82170610 AATGATTATA
82170620 AAATAATATATAATACAT
1 AAATAATATAT-ATACAT
*
82170638 AAATGATATATATACA
1 AAATAATATATATACA
82170654 ATATAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
AAATAATATATATACAT
Found at i:82171123 original size:5 final size:5
Alignment explanation
Indices: 82171100--82171155 Score: 53
Period size: 5 Copynumber: 11.4 Consensus size: 5
82171090 AAAAGATAAG
* * * *
82171100 TAATA T-ATA TAATA AAATA TAATA -AATG TTATA TAATA AAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
82171148 TAAATA TA
1 T-AATA TA
82171156 TAGGAAAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
4 7 0.17
5 28 0.70
6 5 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:82171217 original size:24 final size:24
Alignment explanation
Indices: 82171184--82171253 Score: 68
Period size: 26 Copynumber: 2.8 Consensus size: 24
82171174 TAAATAAAAA
82171184 TTTTATATAAATATATAAATAGTAT
1 TTTTA-ATAAATATATAAATAGTAT
** *
82171209 TTTTAATAATAATATATGTATAGTTT
1 TTTTAAT-A-AATATATAAATAGTAT
* *
82171235 TTTTAAAAAATAAATAAAT
1 TTTTAATAAATATATAAAT
82171254 TATATATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
24 10 0.28
25 7 0.19
26 19 0.53
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (24 bp):
TTTTAATAAATATATAAATAGTAT
Found at i:82171222 original size:26 final size:24
Alignment explanation
Indices: 82171192--82171270 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
82171182 AATTTTATAT
82171192 AAATATATAAATAGTATTTTTAATA
1 AAATATATAAATAGTATTTTTAA-A
** *
82171217 ATAATATATGTATAGTTTTTTTAAA
1 A-AATATATAAATAGTATTTTTAAA
* * *
82171242 AAATAAATAAATTA-TATATATAAA
1 AAATATATAAA-TAGTATTTTTAAA
82171266 AAATA
1 AAATA
82171271 ACAAAATTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
24 19 0.44
25 5 0.12
26 19 0.44
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (24 bp):
AAATATATAAATAGTATTTTTAAA
Found at i:82173789 original size:28 final size:28
Alignment explanation
Indices: 82173758--82173849 Score: 89
Period size: 28 Copynumber: 3.3 Consensus size: 28
82173748 TCTCTTGCGA
*
82173758 TTCTTTCTCTCCTCTACCTT-TTTTGTTT
1 TTCTTTCTCTCCTCT-CCTTCTTTTGTGT
* *
82173786 TTCTTTCACTTCC-CTGCTTCTTTTGTGT
1 TTCTTTCTC-TCCTCTCCTTCTTTTGTGT
* * * *
82173814 TTCTTTCTCTCCTCTGCTTCTCTGGTCT
1 TTCTTTCTCTCCTCTCCTTCTTTTGTGT
82173842 TTCTTTCT
1 TTCTTTCT
82173850 TTTCCCTCCT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
27 6 0.11
28 45 0.83
29 3 0.06
ACGTcount: A:0.02, C:0.30, G:0.08, T:0.60
Consensus pattern (28 bp):
TTCTTTCTCTCCTCTCCTTCTTTTGTGT
Found at i:82180101 original size:28 final size:27
Alignment explanation
Indices: 82180030--82180113 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 27
82180020 GGGATGTTAC
*
82180030 ACTTCTCTTGTTTTTCTTTCTCTTCTTT
1 ACTTCTCTTG-TTTTCTTTCTCTTCTCT
* * * *
82180058 GCTTTTTTTGTGTTTCTTTCTCTCCTCT
1 ACTTCTCTTGT-TTTCTTTCTCTTCTCT
*
82180086 ACTTCTCTTGCTTTTCTTTGTCTTCTCT
1 ACTTCTCTTG-TTTTCTTTCTCTTCTCT
82180114 CCTTTCATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.02
28 42 0.95
29 1 0.02
ACGTcount: A:0.02, C:0.26, G:0.07, T:0.64
Consensus pattern (27 bp):
ACTTCTCTTGTTTTCTTTCTCTTCTCT
Found at i:82180433 original size:28 final size:28
Alignment explanation
Indices: 82180393--82180446 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
82180383 ATTTATTTGT
82180393 TTCTCTTGCTTTTCTTTCTCTACTCTAC
1 TTCTCTTGCTTTTCTTTCTCTACTCTAC
* * *
82180421 TTCTCTTTCTTTTTTTTCTCTTCTCT
1 TTCTCTTGCTTTTCTTTCTCTACTCT
82180447 GCTTTCACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.04, C:0.30, G:0.02, T:0.65
Consensus pattern (28 bp):
TTCTCTTGCTTTTCTTTCTCTACTCTAC
Found at i:82181623 original size:28 final size:28
Alignment explanation
Indices: 82181591--82181678 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
82181581 CTTTATCAAC
*
82181591 CTCTTGTTTTACTTTCTCTTCTCTGCTT
1 CTCTTGTTTTACTTTCTCTTCTCTACTT
* *
82181619 CTCTTGCTTTTA-TTTTTCTCCTCTACTT
1 CTCTTG-TTTTACTTTCTCTTCTCTACTT
*
82181647 CTCTTGTATTT-CTTTCTTTTCTCTACTT
1 CTCTTGT-TTTACTTTCTCTTCTCTACTT
82181675 -TCTT
1 CTCTT
82181679 CATCAACCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 5 0.10
28 41 0.80
29 5 0.10
ACGTcount: A:0.06, C:0.27, G:0.05, T:0.62
Consensus pattern (28 bp):
CTCTTGTTTTACTTTCTCTTCTCTACTT
Found at i:82183560 original size:40 final size:40
Alignment explanation
Indices: 82183515--82183737 Score: 347
Period size: 40 Copynumber: 5.6 Consensus size: 40
82183505 CAAGCTCAAT
* * * * * **
82183515 TGCCTTCGGGTCTCAACCCGGGTATAGCAACTCGCATGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
82183555 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
82183595 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
* * *
82183635 TGCCTTCGGGTCTTAGCCTGTATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
82183675 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
82183715 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
82183738 GTATTCAAAT
Statistics
Matches: 168, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 168 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:82187884 original size:29 final size:28
Alignment explanation
Indices: 82187803--82187917 Score: 79
Period size: 29 Copynumber: 4.0 Consensus size: 28
82187793 TACATACATG
* * *
82187803 CATATAGCCCACTAGGCCCAATCTTATT
1 CATATGGCCCACTAGGCCAAATCATATT
* ***
82187831 CAAATGGCCCATCT-GGCCCTGTTCATATT
1 CATATGGCCCA-CTAGG-CCAAATCATATT
* **
82187860 CTTATGGCCCACTAGGCCAAATTCACCTT
1 CATATGGCCCACTAGGCCAAA-TCATATT
* *
82187889 CATGTGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGG-CCAAATCATATT
82187918 ATCCCCATGC
Statistics
Matches: 64, Mismatches: 18, Indels: 9
0.70 0.20 0.10
Matches are distributed among these distances:
28 15 0.23
29 44 0.69
30 5 0.08
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCAAATCATATT
Found at i:82195001 original size:29 final size:28
Alignment explanation
Indices: 82194920--82195034 Score: 88
Period size: 29 Copynumber: 4.0 Consensus size: 28
82194910 TACATACATG
* * *
82194920 CATATAGCCCACTAGGCCCAATCTTATT
1 CATATGGCCCACTAGGCCAAATCATATT
* **
82194948 CAAATGGCCCATCT-GGCTCAGTTCATATT
1 CATATGGCCCA-CTAGGC-CAAATCATATT
* **
82194977 CTTATGGCCCACTAGGCCAAATTCACCTT
1 CATATGGCCCACTAGGCCAAA-TCATATT
* *
82195006 CATGTGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGG-CCAAATCATATT
82195035 ATACTCATGC
Statistics
Matches: 65, Mismatches: 17, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
28 16 0.25
29 44 0.68
30 5 0.08
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCAAATCATATT
Found at i:82195270 original size:16 final size:16
Alignment explanation
Indices: 82195249--82195291 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
82195239 GTAGCCCAAC
82195249 TTTCGACTTTTCGACA
1 TTTCGACTTTTCGACA
* *
82195265 TTTCGACTTTTTGGCA
1 TTTCGACTTTTCGACA
*
82195281 TTTCGGCTTTT
1 TTTCGACTTTT
82195292 GCCGATTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.21, G:0.16, T:0.51
Consensus pattern (16 bp):
TTTCGACTTTTCGACA
Found at i:82204500 original size:42 final size:41
Alignment explanation
Indices: 82204379--82204500 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 41
82204369 TACCATACCA
* *
82204379 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATCTCATATCG
* ** * *
82204421 ATGCCAATAGCGTAGCTATGGTCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAA-TCTCATATCG
82204464 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AATCTCA
82204501 ACTAACCCTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCATATCG
Found at i:82206737 original size:28 final size:27
Alignment explanation
Indices: 82206699--82206796 Score: 106
Period size: 28 Copynumber: 3.5 Consensus size: 27
82206689 CAACCTCTTG
*
82206699 TTTTACTTTCTCTTATTTGCTTTTTTTGC
1 TTTTA-TTTCTCTTATTT-CTTCTTTTGC
* *
82206728 TTTTATTTCTCTTCTCTACTTCTTTTGC
1 TTTTATTTCTCTTAT-TTCTTCTTTTGC
* *
82206756 TTTTCTTTCTCTTATCTTCTTCTCTTGC
1 TTTTATTTCTCTTAT-TTCTTCTTTTGC
*
82206784 TTTTCTTTCTCTT
1 TTTTATTTCTCTT
82206797 CTCCGCTTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
28 55 0.90
29 6 0.10
ACGTcount: A:0.05, C:0.23, G:0.04, T:0.67
Consensus pattern (27 bp):
TTTTATTTCTCTTATTTCTTCTTTTGC
Done.