Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 247 of 332
Found at i:82207338 original size:20 final size:20
Alignment explanation
Indices: 82207303--82207355 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
82207293 CCGAACCTTG
*
82207303 AGGTTCGAGATTTAAGGTTCA
1 AGGTTCG-GGTTTAAGGTTCA
82207324 AGGTTCGGGTTTAAGGTTCA
1 AGGTTCGGGTTTAAGGTTCA
*
82207344 AGTGTTTGGGTT
1 AG-GTTCGGGTT
82207356 ATAGGTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.21, C:0.08, G:0.34, T:0.38
Consensus pattern (20 bp):
AGGTTCGGGTTTAAGGTTCA
Found at i:82209618 original size:43 final size:42
Alignment explanation
Indices: 82209552--82209672 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
82209542 TACTCAACCA
*
82209552 ATGCCATATCCCAGA-TATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATAGCCCA-ACTATGGTCTTACATGTAATCTTGTATCG
*
82209594 ATGCCAATAGCCCAACTATGGTCTTACATG-AAGTCTCGTATCG
1 ATGCC-ATAGCCCAACTATGGTCTTACATGTAA-TCTTGTATCG
* * ** *
82209637 ATGTCATATCCCAGGTATGGTCTTACACGTAATCTT
1 ATGCCATAGCCCAACTATGGTCTTACATGTAATCTT
82209673 AGTAATCCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACATGTAATCTTGTATCG
Found at i:82211239 original size:28 final size:28
Alignment explanation
Indices: 82211208--82211280 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
82211198 AACCTCTTAT
82211208 TTTTCTTTCACTTCTCTACTTCTCTCGC
1 TTTTCTTTCACTTCTCTACTTCTCTCGC
* * * *
82211236 TTTTCTTTCTC-TCTTCAACTTCTTTTGC
1 TTTTCTTTCACTTC-TCTACTTCTCTCGC
*
82211264 TTTTCTTTCGCTTCTCT
1 TTTTCTTTCACTTCTCT
82211281 GCTTTCACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
27 2 0.05
28 33 0.89
29 2 0.05
ACGTcount: A:0.05, C:0.32, G:0.04, T:0.59
Consensus pattern (28 bp):
TTTTCTTTCACTTCTCTACTTCTCTCGC
Found at i:82212630 original size:17 final size:17
Alignment explanation
Indices: 82212603--82212638 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
82212593 GATCCCTATT
82212603 CATGAGTCTATATATACA
1 CATGAGTCTATATAT-CA
82212621 CATG-GTCTATATATCA
1 CATGAGTCTATATATCA
82212637 CA
1 CA
82212639 ATTTAAGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 10 0.56
18 4 0.22
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.33
Consensus pattern (17 bp):
CATGAGTCTATATATCA
Found at i:82213465 original size:11 final size:11
Alignment explanation
Indices: 82213449--82213475 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
82213439 TAACATATAC
82213449 CATATAATTCA
1 CATATAATTCA
82213460 CATATAATTCA
1 CATATAATTCA
82213471 CATAT
1 CATAT
82213476 TTCCAAACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (11 bp):
CATATAATTCA
Found at i:82213826 original size:44 final size:42
Alignment explanation
Indices: 82213686--82213847 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
82213676 AGCTCGTACA
* * * * * *
82213686 ATGCCAACATCCCAAACGTGGTCTTACATGTAATCAAATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
* * *
82213729 ATGGC-ACTGTCCCAAACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATACG
* *
82213771 ATGCCAACGTCCCAGACATGGTCTTATACGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-AA-TACG
*
82213815 ATGCCAACGTCCCAGACCTGGTCTTACACGAAA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAA
82213848 ACACATATCG
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
42 26 0.26
43 42 0.42
44 31 0.31
45 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:82217886 original size:47 final size:47
Alignment explanation
Indices: 82217832--82218637 Score: 1333
Period size: 47 Copynumber: 17.1 Consensus size: 47
82217822 TTAGGATTTT
** ** * * *
82217832 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** * *
82217879 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
82217930 GTGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
82217977 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218024 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
82218071 CTGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
82218118 ATGTGGTGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218165 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218212 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218259 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218306 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
82218353 ATGTGATGAATGTGAACATGCGTATGAGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218400 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
82218447 ATGTGATGAATGTGAACATGCGTATGAGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218494 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
82218541 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
82218588 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
82218635 ATG
1 ATG
82218638 CGAAATGTGT
Statistics
Matches: 721, Mismatches: 34, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
47 682 0.95
50 1 0.00
51 38 0.05
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:82218004 original size:23 final size:23
Alignment explanation
Indices: 82217977--82218051 Score: 59
Period size: 23 Copynumber: 3.2 Consensus size: 23
82217967 CGAATGGCCA
82217977 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATGTGAACATGCAT
*
82218000 ATGTG-TGATAAGGTCG-A-ATGGCCA-
1 ATGTGATG--AATGT-GAACAT-G-CAT
*
82218024 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCAT
82218047 ATGTG
1 ATGTG
82218052 TGATAAGGCC
Statistics
Matches: 40, Mismatches: 3, Indels: 18
0.66 0.05 0.30
Matches are distributed among these distances:
22 4 0.10
23 18 0.45
24 13 0.32
25 5 0.12
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCAT
Found at i:82218747 original size:46 final size:46
Alignment explanation
Indices: 82218611--82218747 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
82218601 GAACATGTAT
* *
82218611 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
82218657 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
82218703 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
82218748 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:82218794 original size:13 final size:13
Alignment explanation
Indices: 82218776--82218802 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82218766 GTGGCCAAAT
82218776 GACAAACGGTGGA
1 GACAAACGGTGGA
82218789 GACAAACGGTGGA
1 GACAAACGGTGGA
82218802 G
1 G
82218803 GGTGTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.41, T:0.07
Consensus pattern (13 bp):
GACAAACGGTGGA
Found at i:82227769 original size:28 final size:28
Alignment explanation
Indices: 82227737--82227792 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
82227727 GAGATAGGGT
* * *
82227737 GACAAGATTTCGTTGGATTAGGGTGAAA
1 GACAAGATTTCGCTAGAATAGGGTGAAA
*
82227765 GACAAGATTTTGCTAGAATAGGGTGAAA
1 GACAAGATTTCGCTAGAATAGGGTGAAA
82227793 CCTAATAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (28 bp):
GACAAGATTTCGCTAGAATAGGGTGAAA
Found at i:82245484 original size:40 final size:39
Alignment explanation
Indices: 82245432--82245561 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
82245422 TAACTCATTC
* *
82245432 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGTACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
82245472 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
82245512 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
*
82245552 AATACCTTCG
1 AATGCCTTCG
82245562 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 2 0.03
40 71 0.96
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:82252409 original size:40 final size:39
Alignment explanation
Indices: 82252357--82252540 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
82252347 TAACTCATTC
*
82252357 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
82252397 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
82252437 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
82252477 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
82252518 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82252541 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:82252419 original size:79 final size:80
Alignment explanation
Indices: 82252320--82252540 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
82252310 CTCGTTCAAG
* * ** * *
82252320 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
82252383 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
82252399 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
82252464 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
82252479 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
82252541 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:82252500 original size:80 final size:80
Alignment explanation
Indices: 82252360--82252540 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
82252350 CTCATTCAAT
* * *
82252360 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
82252424 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
82252439 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
82252502 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
82252520 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
82252541 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:82262237 original size:2 final size:2
Alignment explanation
Indices: 82262230--82262263 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
82262220 AATGTTGATG
* *
82262230 AT AT AT AT AT GT AT AT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82262264 GTGTGTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82262247 original size:12 final size:12
Alignment explanation
Indices: 82262230--82262265 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
82262220 AATGTTGATG
82262230 ATATATATATGT
1 ATATATATATGT
82262242 ATATATATATGT
1 ATATATATATGT
82262254 ATATATATATGT
1 ATATATATATGT
82262266 GTGTATTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATATATATATGT
Found at i:82269775 original size:19 final size:19
Alignment explanation
Indices: 82269753--82269841 Score: 75
Period size: 19 Copynumber: 4.8 Consensus size: 19
82269743 ACATGTAAAA
82269753 ATTATTATATATTATTTTT
1 ATTATTATATATTATTTTT
82269772 ATTATT-TATCAAGTTATTTTT
1 ATTATTATAT--A-TTATTTTT
*
82269793 ATT-TTAT-TA-TA-TATT
1 ATTATTATATATTATTTTT
82269808 -TTATTATATATTATATTTT
1 ATTATTATATATTAT-TTTT
*
82269827 GTTA-TATATATTATT
1 ATTATTATATATTATT
82269842 CCCTATATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 21
0.72 0.02 0.26
Matches are distributed among these distances:
14 2 0.03
15 7 0.12
16 4 0.07
17 2 0.03
18 5 0.09
19 19 0.33
20 7 0.12
21 12 0.21
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.65
Consensus pattern (19 bp):
ATTATTATATATTATTTTT
Found at i:82269835 original size:12 final size:12
Alignment explanation
Indices: 82269792--82269824 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
82269782 AAGTTATTTT
82269792 TATTTTATTATA
1 TATTTTATTATA
82269804 TATTTTATTATA
1 TATTTTATTATA
*
82269816 TATTATATT
1 TATTTTATT
82269825 TTGTTATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:82269841 original size:17 final size:17
Alignment explanation
Indices: 82269753--82269894 Score: 68
Period size: 17 Copynumber: 8.2 Consensus size: 17
82269743 ACATGTAAAA
82269753 ATTATTATATATTATTTTT
1 ATTA-TATATATTA-TTTT
*
82269772 ATTATTTATCAAGTTATTTTT
1 ATTATATAT--A-TTA-TTTT
*
82269793 ATTTTAT-TATATATTTT
1 ATTATATATAT-TATTTT
82269810 ATTATATAT-TATATTTT
1 ATTATATATAT-TATTTT
* *
82269827 GTTATATATATTATTCCCT
1 ATTATATATATTATT--TT
*
82269846 A-TAT-TATCTTCATTTT
1 ATTATATATATT-ATTTT
*
82269862 A-T-TATATATTATTCT
1 ATTATATATATTATTTT
82269877 ATTAT-T-TATTA-TTT
1 ATTATATATATTATTTT
82269891 ATTA
1 ATTA
82269895 GAACATATAA
Statistics
Matches: 99, Mismatches: 12, Indels: 29
0.71 0.09 0.21
Matches are distributed among these distances:
14 6 0.06
15 11 0.11
16 10 0.10
17 37 0.37
18 15 0.15
19 5 0.05
20 2 0.02
21 13 0.13
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (17 bp):
ATTATATATATTATTTT
Found at i:82269873 original size:7 final size:7
Alignment explanation
Indices: 82269859--82269894 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
82269849 TTATCTTCAT
82269859 TTTATTA
1 TTTATTA
*
82269866 TATATTA
1 TTTATTA
82269873 TTCTATTA
1 TT-TATTA
82269881 TTTATTA
1 TTTATTA
82269888 TTTATTA
1 TTTATTA
82269895 GAACATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:82269881 original size:15 final size:14
Alignment explanation
Indices: 82269754--82269894 Score: 58
Period size: 15 Copynumber: 9.4 Consensus size: 14
82269744 CATGTAAAAA
82269754 TTATTATATATTAT
1 TTATTATATATTAT
82269768 TT-TTAT-TATTTAT
1 TTATTATATA-TTAT
** *
82269781 CAAGTTAT-TTTTATT
1 TTA-TTATATATTA-T
*
82269796 TTATTATATATTTT
1 TTATTATATATTAT
*
82269810 ATTATATATTATATTTT
1 -TTAT-TA-TATATTAT
82269827 GTTA-TATATATTAT
1 -TTATTATATATTAT
*
82269841 TCCCTA-TATTATCTTCATT
1 T---TATTA-TATATT-A-T
82269860 TTATTATATATTAT
1 TTATTATATATTAT
*
82269874 TCTATTATTTATTAT
1 T-TATTATATATTAT
82269889 TTATTA
1 TTATTA
82269895 GAACATATAA
Statistics
Matches: 99, Mismatches: 12, Indels: 32
0.69 0.08 0.22
Matches are distributed among these distances:
12 2 0.02
13 9 0.09
14 24 0.24
15 30 0.30
16 13 0.13
17 18 0.18
18 1 0.01
19 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (14 bp):
TTATTATATATTAT
Found at i:82270055 original size:20 final size:18
Alignment explanation
Indices: 82270024--82270078 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
82270014 ATATTATTAT
*
82270024 TTTTATAAATATATTAAG
1 TTTTATATATATATTAAG
* *
82270042 TTATTATATCATATAGTATG
1 TT-TTATAT-ATATATTAAG
82270062 TTTTATATATATATTAA
1 TTTTATATATATATTAA
82270079 TCGTTTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.30
19 11 0.37
20 10 0.33
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTTATATATATATTAAG
Found at i:82270225 original size:19 final size:19
Alignment explanation
Indices: 82270180--82270226 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
82270170 TATGTTTATA
*
82270180 ATTTGTTTATTTATTTTTGT
1 ATTT-TTTATTTATTTTAGT
82270200 ATTTTTTATTTA-TTTAGT
1 ATTTTTTATTTATTTTAGT
82270218 ATTGTTTTA
1 ATT-TTTTA
82270227 GTAGGTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 8 0.32
19 13 0.52
20 4 0.16
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (19 bp):
ATTTTTTATTTATTTTAGT
Found at i:82281867 original size:44 final size:44
Alignment explanation
Indices: 82281820--82282441 Score: 659
Period size: 44 Copynumber: 14.1 Consensus size: 44
82281810 TCTAGAAAGT
* * *
82281820 AGATTTGGTGTCTCTGTATTGACAGGGAGCAGATCAAAGATAGT
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAGC
* *
82281864 AGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGA
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAGC
** *
82281908 AGATTTGGCGTCTCTGTATTGACAAAGAGCAGATCGAAGATAGT
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAGC
*
82281952 AGATTTGGCGTCTCTGTATTGAGAGAGG-GCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGACAG-GGAGCAGATCGAAGATAGC
* ** *
82281996 AGATTTGGCATCTCTGTATTGACAAAGAGCAAATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAGC
* * * * *
82282040 GGATTTGGCGTTTCTGTATCGACAGGGAGTAGATCAAAGAT-GAC
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAG-C
* * * *
82282084 AGATTTGGCCTCTCTGTATTGATAAGAGG-GCAAATCGAAGATAAC
1 AGATTTGGCGTCTCTGTATTGA-CAG-GGAGCAGATCGAAGATAGC
* *
82282129 AGATTTGGCGCCTCTGTATTGACAGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAGC
* * * * * * *
82282173 CGATTTGGCATCTCTATATCGACGGGGAGTAGATCAAAGATAGC
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAGC
*
82282217 AGATTTGGCGTCTCTGTATTGACAGAGG-GCAGATCAAAGAT-GAC
1 AGATTTGGCGTCTCTGTATTGACAG-GGAGCAGATCGAAGATAG-C
* * * ** *
82282261 AGATTTAGCATCTCTATATTGACAGAAAGCAGATCAAAGAT-GAC
1 AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAG-C
* * *
82282305 AGATTTGGCATCTCTGTATTGAAAGAGG-GCAGATCGAAGATAGT
1 AGATTTGGCGTCTCTGTATTGACAG-GGAGCAGATCGAAGATAGC
* * *
82282349 GGATTTGGTGTCTCTGTATTGACAGAGG-GCAGATCAAAGAT-GAC
1 AGATTTGGCGTCTCTGTATTGACAG-GGAGCAGATCGAAGATAG-C
* * *
82282393 AGATTTGGCGTCTCTGTATTAGCCGGGGAGCAGATCGAAGATTGC
1 AGATTTGGCGTCTCTGTATT-GACAGGGAGCAGATCGAAGATAGC
82282438 AGAT
1 AGAT
82282442 CTGACATTCG
Statistics
Matches: 485, Mismatches: 77, Indels: 31
0.82 0.13 0.05
Matches are distributed among these distances:
43 5 0.01
44 420 0.87
45 57 0.12
46 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (44 bp):
AGATTTGGCGTCTCTGTATTGACAGGGAGCAGATCGAAGATAGC
Found at i:82284112 original size:25 final size:25
Alignment explanation
Indices: 82284083--82284133 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
82284073 ATTTTTATTA
82284083 TTTATCAAGT-TATTTTATTATATAT
1 TTTATCAA-TATATTTTATTATATAT
**
82284108 TTTATTTATATATTTTATTATATAT
1 TTTATCAATATATTTTATTATATAT
82284133 T
1 T
82284134 ATATTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTATCAATATATTTTATTATATAT
Found at i:82284144 original size:17 final size:17
Alignment explanation
Indices: 82284061--82284149 Score: 75
Period size: 16 Copynumber: 5.6 Consensus size: 17
82284051 CATGTAAAAA
*
82284061 TTATTATATGTTAT-TT
1 TTATTATATATTATATT
* * *
82284077 TTATTATTTATCA-A-G
1 TTATTATATATTATATT
*
82284092 TTATT-T-TATTATATA
1 TTATTATATATTATATT
*
82284107 TT-TTATTTA-TATATT
1 TTATTATATATTATATT
82284122 TTATTATATATTATATT
1 TTATTATATATTATATT
82284139 TTATTATATAT
1 TTATTATATAT
82284150 ATTATTCCCT
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
13 4 0.07
14 4 0.07
15 15 0.26
16 18 0.31
17 17 0.29
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.65
Consensus pattern (17 bp):
TTATTATATATTATATT
Found at i:82284149 original size:12 final size:12
Alignment explanation
Indices: 82284093--82284138 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
82284083 TTTATCAAGT
82284093 TATTTTATTATA
1 TATTTTATTATA
82284105 TATTTTATTTATA
1 TATTTTA-TTATA
82284118 TATTTTATTATA
1 TATTTTATTATA
*
82284130 TATTATATT
1 TATTTTATT
82284139 TTATTATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 20 0.62
13 12 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTTTATTATA
Found at i:82284154 original size:12 final size:12
Alignment explanation
Indices: 82284097--82284155 Score: 67
Period size: 10 Copynumber: 5.4 Consensus size: 12
82284087 TCAAGTTATT
*
82284097 TTATTATATATT
1 TTATTATATATA
82284109 TTATT-TATATA
1 TTATTATATATA
82284120 TT-TTAT-TATA
1 TTATTATATATA
82284130 -TATTATAT-T-
1 TTATTATATATA
82284139 TTATTATATATA
1 TTATTATATATA
82284151 TTATT
1 TTATT
82284156 CCCTATATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
9 1 0.03
10 19 0.47
11 10 0.25
12 10 0.25
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TTATTATATATA
Found at i:82284187 original size:7 final size:7
Alignment explanation
Indices: 82284173--82284208 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
82284163 TTATCTTCAT
82284173 TTTATTA
1 TTTATTA
*
82284180 TATATTA
1 TTTATTA
82284187 TTCTATTA
1 TT-TATTA
82284195 TTTATTA
1 TTTATTA
82284202 TTTATTA
1 TTTATTA
82284209 GTACATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:82284208 original size:29 final size:28
Alignment explanation
Indices: 82284101--82284206 Score: 90
Period size: 29 Copynumber: 3.6 Consensus size: 28
82284091 GTTATTTTAT
* * *
82284101 TATA-TATTTTATTTATATATTTTATTA
1 TATATTATATTATTTATATATATTATTC
*
82284128 TATATTATATTTTATTATATATATTATTCCC
1 TATATTATATTAT-TTATATATATTATT--C
*
82284159 TATATTATCTTCATTTTATTATATATTATTC
1 TATATTATATT-A-TTTA-TATATATTATTC
82284190 TATTATT-TATTATTTAT
1 TA-TATTATATTATTTAT
82284207 TAGTACATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 15
0.74 0.08 0.17
Matches are distributed among these distances:
27 4 0.06
28 7 0.11
29 17 0.27
30 1 0.02
31 16 0.25
32 7 0.11
33 12 0.19
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (28 bp):
TATATTATATTATTTATATATATTATTC
Found at i:82284368 original size:20 final size:18
Alignment explanation
Indices: 82284337--82284386 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
82284327 ATATTATTAT
* *
82284337 TTTTATAAATATATTAAG
1 TTTTATATATATAGTAAG
*
82284355 TTATTATATCATATAGTATG
1 TT-TTATAT-ATATAGTAAG
82284375 TTTTATATATAT
1 TTTTATATATAT
82284387 TTTTTTATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 6 0.22
19 11 0.41
20 10 0.37
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (18 bp):
TTTTATATATATAGTAAG
Found at i:82284537 original size:18 final size:18
Alignment explanation
Indices: 82284516--82284550 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82284506 ATCTCATAAA
*
82284516 TTATTTGTTATTTTTATG
1 TTATTTATTATTTTTATG
*
82284534 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
82284551 ATATTCGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:82284707 original size:106 final size:106
Alignment explanation
Indices: 82284589--82284788 Score: 253
Period size: 106 Copynumber: 1.9 Consensus size: 106
82284579 TTGATTTGAG
* * * * *
82284589 TTATATTTGCATGAAATATT-AT-TATA-TATGTAATTTATGTTGTTATATTCATTATTTTCTAT
1 TTATATATGCATGAAAGATTAATGTATATTATATAATTTATGTT-AT-TATTCATCATTTTCTAT
* * *
82284651 GTTATATTTTGCATGAAATATTAATGCATGTATATTTATGTTAT
64 ATTATAGTTT-CATGAAATATTAAAGCATGTATATTTATGTTAT
* *
82284695 TTATATATGCATGAAAGGTTAATGTATATTATATAATTTATGTTATTATTCGTCATTTTCTATAT
1 TTATATATGCATGAAAGATTAATGTATATTATATAATTTATGTTATTATTCATCATTTTCTATAT
*
82284760 TATAGTTTCATGAAATGTTAAAGCATGTA
66 TATAGTTTCATGAAATATTAAAGCATGTA
82284789 GTTTATATTG
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
106 36 0.45
107 25 0.31
108 5 0.06
109 14 0.17
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.51
Consensus pattern (106 bp):
TTATATATGCATGAAAGATTAATGTATATTATATAATTTATGTTATTATTCATCATTTTCTATAT
TATAGTTTCATGAAATATTAAAGCATGTATATTTATGTTAT
Found at i:82286715 original size:17 final size:17
Alignment explanation
Indices: 82286690--82286732 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
82286680 ATTTTGTTTG
*
82286690 TTTATTTTTCTTTATTTA
1 TTTA-TTTTCGTTATTTA
*
82286708 TTTCTTTTCGTTATTTA
1 TTTATTTTCGTTATTTA
82286725 TTTATTTT
1 TTTATTTT
82286733 TATCCCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 19 0.86
18 3 0.14
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTATTTTCGTTATTTA
Found at i:82289546 original size:17 final size:17
Alignment explanation
Indices: 82289526--82289559 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
82289516 AGGTTTAGGT
82289526 TTAAAATTTTTAATTAA
1 TTAAAATTTTTAATTAA
**
82289543 TTAATTTTTTTAATTAA
1 TTAAAATTTTTAATTAA
82289560 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAAAATTTTTAATTAA
Found at i:82291761 original size:2 final size:2
Alignment explanation
Indices: 82291754--82291782 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
82291744 AGCTAATAAT
82291754 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
82291783 TTGTACTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82295846 original size:16 final size:16
Alignment explanation
Indices: 82295825--82295862 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
82295815 TTGTAACGCC
82295825 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
82295841 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
82295857 CTCAAA
1 C-CAAA
82295863 TTTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.50, C:0.32, G:0.05, T:0.13
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:82297382 original size:28 final size:29
Alignment explanation
Indices: 82297342--82297449 Score: 98
Period size: 28 Copynumber: 3.8 Consensus size: 29
82297332 ACTGTAAATG
82297342 TGATTTGGGCCTAAT-GGCCATATGAATA
1 TGATTTGGGCCTAATGGGCCATATGAATA
* ** * *
82297370 TGATTTGGGCCTAGTGGGCCACCTAAATG
1 TGATTTGGGCCTAATGGGCCATATGAATA
*
82297399 TGA-TTGGGCCTAATGGGCCATTTGAA-A
1 TGATTTGGGCCTAATGGGCCATATGAATA
* * *
82297426 -GAGATTGGGCCCAATGGGCGATAT
1 TGA-TTTGGGCCTAATGGGCCATAT
82297450 ACAGGTATAT
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.03
28 50 0.78
29 12 0.19
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGCCATATGAATA
Found at i:82297402 original size:29 final size:29
Alignment explanation
Indices: 82297336--82297418 Score: 107
Period size: 28 Copynumber: 2.9 Consensus size: 29
82297326 AACATGACTG
*
82297336 TAAATGTGATTTGGGCCTAAT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCACA
* * * *
82297364 TGAATATGATTTGGGCCTAGTGGGCCACC
1 TAAATGTGATTTGGGCCTAATGGGCCACA
82297393 TAAATGTGA-TTGGGCCTAATGGGCCA
1 TAAATGTGATTTGGGCCTAATGGGCCA
82297419 TTTGAAAGAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 34 0.74
29 12 0.26
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCACA
Found at i:82297444 original size:56 final size:57
Alignment explanation
Indices: 82297336--82297444 Score: 143
Period size: 56 Copynumber: 1.9 Consensus size: 57
82297326 AACATGACTG
* * *
82297336 TAAATGTGATTTGGGCCTAATGGCCATATGAATATGATTTGGGCCTAGTGGGCCACC
1 TAAATGTGATTTGGGCCTAATGGCCATATGAATATGAATTGGGCCCAATGGGCCACC
*
82297393 TAAATGTGA-TTGGGCCTAATGGGCCATTTGAA-A-GAGATTGGGCCCAATGGGC
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAATATGA-ATTGGGCCCAATGGGC
82297445 GATATACAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 2 0.04
56 25 0.54
57 19 0.41
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAATATGAATTGGGCCCAATGGGCCACC
Found at i:82298159 original size:16 final size:16
Alignment explanation
Indices: 82298138--82298170 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
82298128 TCTATGGTGA
82298138 ATGATGAATGCTTGTT
1 ATGATGAATGCTTGTT
82298154 ATGATGAATGCTTGTT
1 ATGATGAATGCTTGTT
82298170 A
1 A
82298171 CTTGTCGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (16 bp):
ATGATGAATGCTTGTT
Found at i:82302235 original size:13 final size:13
Alignment explanation
Indices: 82302217--82302244 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82302207 AGCAATTAAT
82302217 GGATGAGACCTTG
1 GGATGAGACCTTG
82302230 GGATGAGACCTTG
1 GGATGAGACCTTG
82302243 GG
1 GG
82302245 TGCTCTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.43, T:0.21
Consensus pattern (13 bp):
GGATGAGACCTTG
Found at i:82305399 original size:46 final size:46
Alignment explanation
Indices: 82305346--82305518 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
82305336 TGGTTGAGCA
* *
82305346 TCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * * * * *
82305392 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGA-ACG
* *
82305439 TCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
82305485 -CTC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
82305519 GGGGTAGGTT
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
45 4 0.04
46 63 0.62
47 33 0.33
48 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:82305502 original size:93 final size:93
Alignment explanation
Indices: 82305343--82305513 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
82305333 GGATGGTTGA
* *
82305343 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCGAACTCGTTGAGT
1 GCATCCGAAATCGTGGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAGT
82305408 TGAGTCCAAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* *
82305436 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTC-AAGCTCGTTGA
1 GCATCCGAAATCGTGGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTC-CGAA-CTCGTTGA
*
82305499 GTTGAGTCCGAGTTC
64 GTTGAGTCCAAGTTC
82305514 ACTTAGGGGT
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAAATCGTGGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:82311794 original size:49 final size:49
Alignment explanation
Indices: 82311722--82311819 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
82311712 TTCACACGGG
82311722 CGTGTGACCTGTACCTGTTGGAAGAATGTTTAAATTTTAGAGAAATTTT
1 CGTGTGACCTGTACCTGTTGGAAGAATGTTTAAATTTTAGAGAAATTTT
*
82311771 CGTGTGACCTTTACCTGTTGGAAGAATGTTTAAATTTTAGAGAAATTTT
1 CGTGTGACCTGTACCTGTTGGAAGAATGTTTAAATTTTAGAGAAATTTT
82311820 GCATGTGTTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (49 bp):
CGTGTGACCTGTACCTGTTGGAAGAATGTTTAAATTTTAGAGAAATTTT
Found at i:82321324 original size:11 final size:11
Alignment explanation
Indices: 82321300--82321349 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
82321290 ACTCAATCCT
**
82321300 AAGGAAAATAA
1 AAGGAAAACCA
82321311 AAGGAAAACCA
1 AAGGAAAACCA
82321322 AA-GAAAACCCA
1 AAGGAAAA-CCA
*
82321333 AA-GAAAAACA
1 AAGGAAAACCA
82321343 AAGGAAA
1 AAGGAAA
82321350 GAAAAAGAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.26
11 25 0.74
ACGTcount: A:0.70, C:0.12, G:0.16, T:0.02
Consensus pattern (11 bp):
AAGGAAAACCA
Found at i:82335705 original size:26 final size:26
Alignment explanation
Indices: 82335676--82335728 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
82335666 TCAAACATGC
82335676 ATTTAGGTCAATTTAA-C-CCTAGGGGT
1 ATTTAGGT-AA-TTAATCTCCTAGGGGT
*
82335702 ATTTCGGTAATTAATCTCCTAGGGGT
1 ATTTAGGTAATTAATCTCCTAGGGGT
82335728 A
1 A
82335729 AAACTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.17
25 3 0.12
26 17 0.71
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (26 bp):
ATTTAGGTAATTAATCTCCTAGGGGT
Found at i:82337596 original size:46 final size:46
Alignment explanation
Indices: 82337529--82337650 Score: 192
Period size: 46 Copynumber: 2.7 Consensus size: 46
82337519 CGCCCCTAAG
* * *
82337529 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCT-CATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCATAAA
*
82337575 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAA
82337621 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
82337651 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
45 1 0.01
46 70 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAA
Found at i:82344131 original size:20 final size:20
Alignment explanation
Indices: 82344103--82344145 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
82344093 TAATATAAGA
* *
82344103 AAAAATTATAATTATTTTTT
1 AAAAATTATAATGAATTTTT
* *
82344123 AAAATTTATTATGAATTTTT
1 AAAAATTATAATGAATTTTT
82344143 AAA
1 AAA
82344146 TTCAGAATAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
AAAAATTATAATGAATTTTT
Found at i:82347413 original size:26 final size:26
Alignment explanation
Indices: 82347382--82347437 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
82347372 TGAAATGCCC
*
82347382 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82347408 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82347434 ATCA
1 ATCA
82347438 ATTTTTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82348142 original size:20 final size:18
Alignment explanation
Indices: 82348112--82348156 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
82348102 AATTAGAATG
*
82348112 TAAAAATTAAATTAAAAA
1 TAAAAATTAAAATAAAAA
82348130 CTAAAATATTAAAATAAAAA
1 -TAAAA-ATTAAAATAAAAA
82348150 TAAAAAT
1 TAAAAAT
82348157 GACTAAAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 10 0.42
20 12 0.50
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
TAAAAATTAAAATAAAAA
Found at i:82358575 original size:21 final size:21
Alignment explanation
Indices: 82358546--82358585 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
82358536 AAATATAAAG
*
82358546 AAAAATTATAATTATTTTTTT
1 AAAAATTATAATGATTTTTTT
* *
82358567 AAAATTTATTATGATTTTT
1 AAAAATTATAATGATTTTT
82358586 AAATTCAGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
AAAAATTATAATGATTTTTTT
Found at i:82362838 original size:47 final size:48
Alignment explanation
Indices: 82362764--82362906 Score: 179
Period size: 47 Copynumber: 3.0 Consensus size: 48
82362754 CTTTATCAAT
*
82362764 ATAACTGGAGGCCTT-AGCCTCTTTAATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATTAAGCC-CTTTAATAACTGGGGCATAAGCCCTTTTA
*
82362812 ATAACTGGGGCATTAAGCCCTTTAATAACT-GGGCATAAGCCCTTTATC
1 ATAACTGGGGCATTAAGCCCTTTAATAACTGGGGCATAAGCCCTTT-TA
* *
82362860 GTAAC-GGGGCA-TAAGCCCTTTATCTAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATTAAGCCCTTTA-ATAACTGGGGCATAAGCCCTTTTA
82362907 CACTTCCTTC
Statistics
Matches: 85, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
46 16 0.19
47 37 0.44
48 32 0.38
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATTAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:82362840 original size:24 final size:23
Alignment explanation
Indices: 82362764--82362904 Score: 162
Period size: 24 Copynumber: 6.0 Consensus size: 23
82362754 CTTTATCAAT
* *
82362764 ATAACTGGAGGCCTTAGCCTCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTA
82362789 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
82362812 ATAACTGGGGCATTAAGCCCTTTA
1 ATAACTGGGGCA-TAAGCCCTTTA
82362836 ATAACT-GGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
*
82362858 TCGTAAC-GGGGCATAAGCCCTTTA
1 --ATAACTGGGGCATAAGCCCTTTA
*
82362882 TCTAACTGGGGCATAAGCCCTTT
1 -ATAACTGGGGCATAAGCCCTTT
82362905 TACACTTCCT
Statistics
Matches: 104, Mismatches: 5, Indels: 15
0.84 0.04 0.12
Matches are distributed among these distances:
22 12 0.12
23 29 0.28
24 49 0.47
25 14 0.13
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:82366467 original size:15 final size:15
Alignment explanation
Indices: 82366447--82366476 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82366437 CAACACTTGT
82366447 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
82366462 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
82366477 ATACATTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:82374406 original size:15 final size:15
Alignment explanation
Indices: 82374386--82374415 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82374376 CAACACTTGT
82374386 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
82374401 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
82374416 ATACATTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:82377320 original size:15 final size:15
Alignment explanation
Indices: 82377300--82377329 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
82377290 TATTATCTAA
82377300 TATTAGAACTTTTCC
1 TATTAGAACTTTTCC
82377315 TATTAGAACTTTTCC
1 TATTAGAACTTTTCC
82377330 CTTGAACCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (15 bp):
TATTAGAACTTTTCC
Found at i:82377554 original size:24 final size:25
Alignment explanation
Indices: 82377508--82377560 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
82377498 TCTGTGCTGT
*
82377508 ATAA-CAGGAAGCTCATAAAAGCC-
1 ATAATCAGAAAGCTCATAAAAGCCA
**
82377531 ATAATCAGAAAGCTCATATGAGCCA
1 ATAATCAGAAAGCTCATAAAAGCCA
82377556 ATAAT
1 ATAAT
82377561 GGGTAGCCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.16
24 16 0.64
25 5 0.20
ACGTcount: A:0.47, C:0.19, G:0.15, T:0.19
Consensus pattern (25 bp):
ATAATCAGAAAGCTCATAAAAGCCA
Found at i:82387365 original size:46 final size:45
Alignment explanation
Indices: 82387298--82387465 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 45
82387288 CGCCCCTAAG
*
82387298 TGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
82387344 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * * *
82387391 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
*
82387437 TAAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
82387466 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 54 0.53
47 28 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:82387415 original size:93 final size:93
Alignment explanation
Indices: 82387299--82387469 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
82387289 GCCCCTAAGT
* * * *
82387299 GAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATAAACTCGGACTCAACTCAA
82387364 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
82387392 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTAAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATAAACTCGGACTCAACTCAA
82387457 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82387470 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATAAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82388312 original size:161 final size:154
Alignment explanation
Indices: 82388048--82388366 Score: 500
Period size: 161 Copynumber: 2.0 Consensus size: 154
82388038 CATATACTTG
82388048 TGACTATTGGCATTTTGCCGATTAAGCCCTTTTACTCGTTTTCACTCAAAACCGAGTAGCACAAG
1 TGACTATTGGCATTTTGCCGATTAAGCCCTTTTACTCGTTTTCACT-AAAACCGAGTAGCACAAG
82388113 TTCTCTAAATAATTTAAAACCCATATTCTATCATAAACATCAAAATACACAAATTTCACCTAT-G
65 TTCTCTAAATAATTTAAAACCCATATTCTATCATAAACATCAAAATACACAAATTTCACCT-TGG
82388177 GTATTTTTCCAAATATAAACCCTAGGT
129 GTA-TTTTCCAAATATAAACCCTAGGT
*
82388204 TGACTATTAGGTATTTTCGCCGATTAAGCCGGGGCTTTTACTCGTTTTCACT-AAA-CGAGTAGC
1 TGACTATT-GGCATTTT-GCCGATTAAGCC----CTTTTACTCGTTTTCACTAAAACCGAGTAGC
*
82388267 ACAAGTTGTCTAACATAATTTAAAACCCCATATTCTATCATAAACATCAAAATACACAAATTTCA
60 ACAAGTTCTCTAA-ATAATTTAAAA-CCCATATTCTATCATAAACATCAAAATACACAAATTTCA
82388332 CCTTGGGTATTTTCCAAATATAAACCCTAGGT
123 CCTTGGGTATTTTCCAAATATAAACCCTAGGT
82388364 TGA
1 TGA
82388367 ATTATTGCTA
Statistics
Matches: 152, Mismatches: 2, Indels: 14
0.90 0.01 0.08
Matches are distributed among these distances:
156 8 0.05
157 7 0.05
158 12 0.08
159 20 0.13
160 41 0.27
161 46 0.30
162 18 0.12
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.33
Consensus pattern (154 bp):
TGACTATTGGCATTTTGCCGATTAAGCCCTTTTACTCGTTTTCACTAAAACCGAGTAGCACAAGT
TCTCTAAATAATTTAAAACCCATATTCTATCATAAACATCAAAATACACAAATTTCACCTTGGGT
ATTTTCCAAATATAAACCCTAGGT
Found at i:82397428 original size:26 final size:26
Alignment explanation
Indices: 82397397--82397452 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
82397387 TGAAATGCCC
*
82397397 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82397423 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82397449 ATCA
1 ATCA
82397453 ATTTTTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82398162 original size:20 final size:18
Alignment explanation
Indices: 82398132--82398176 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
82398122 AATTAGAATG
*
82398132 TAAAAATTAAATTAAAAA
1 TAAAAATTAAAATAAAAA
82398150 CTAAAATATTAAAATAAAAA
1 -TAAAA-ATTAAAATAAAAA
82398170 TAAAAAT
1 TAAAAAT
82398177 GACTAAAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 10 0.42
20 12 0.50
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
TAAAAATTAAAATAAAAA
Found at i:82401610 original size:17 final size:17
Alignment explanation
Indices: 82401590--82401623 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82401580 CTATATTTCA
82401590 TTCAATGACATATAATT
1 TTCAATGACATATAATT
82401607 TTCAATGACATATAATT
1 TTCAATGACATATAATT
82401624 ACCATACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
TTCAATGACATATAATT
Found at i:82415577 original size:878 final size:878
Alignment explanation
Indices: 82413879--82415606 Score: 3001
Period size: 878 Copynumber: 2.0 Consensus size: 878
82413869 CACGAAGCAC
82413879 ACAGTGGTTGTTTATCCATTCATTCGGGGAGGACAAAAATGTATAATGATTTGAAATAATTATAC
1 ACAGTGGTTGTTTATCCATTCATTCGGGGAGGACAAAAATGTATAATGATTTGAAATAATTATAC
*
82413944 TGGTGGTCGGGCATGAAACGAGACATTTCTAAGTTTGTGTCGAGATGTTTGGTTTGTCAGCAAGT
66 TGGTGGTCGGGCATGAAACAAGACATTTCTAAGTTTGTGTCGAGATGTTTGGTTTGTCAGCAAGT
*
82414009 TAAAGCTGAACATTAGGTGCCATCAGGATTGTTACAACCAGTAATGATACCAGAGTGGAAATGGG
131 TAAAGCTGAACATTAGGTGCCATCAAGATTGTTACAACCAGTAATGATACCAGAGTGGAAATGGG
* * * *
82414074 ATAGAGTCATGATGGATTTTGTATCGGGTTTGTCTCTGTCTTCGAAAAGAAAGATGCTATTTGGG
196 ATAGAGTCACGATGGATTTTGTATCAGGTTTGCCTCTGTCTTCGAAAAGAAACATGCTATTTGGG
* *
82414139 TTGTCGTTGATCGACTAACAAAGTCTGCATATTTCATTCTGGTACGTATAGACTATACGCTTGAT
261 TTGTCGTTGATCGACTAACAAAGTCTACACATTTCATTCTGGTACGTATAGACTATACGCTTGAT
* *
82414204 AGATTAGCAGAGTTGTATATTTCTGAGATCATTAGATTGCACAGGTGCCAGTTTCTATTATTTCG
326 AGATTAGCAGAGTTGTATATTACTGAGATCATTAGATTGCACAGGTGCCAGTTTCGATTATTTCG
* *
82414269 GATAGAGATCCGAGGTTTACATCACAATTTTAGAAGGAATTGCAAGAAGCTTTGGGTACGCGGTT
391 GATAGAGATCCGAGGTTTACATCACAATTTTAGAAGAAACTGCAAGAAGCTTTGGGTACGCGGTT
82414334 GAAATTTAGTACCGCATTTCATCCGCAAACCAACATTCAGTCTGAAAGAGTAATTTAGATTCTTG
456 GAAATTTAGTACCGCATTTCATCCGCAAACCAACATTCAGTCTGAAAGAGTAATTTAGATTCTTG
*
82414399 AAGATATGCTTCGTTACTATGTTTTAGAATTTAAAGGAAACTAGAAGAAATATTTGCCATTAGTT
521 AAGATATGCTTCGTTACTATGTTTTAGAATTTAAAAGAAACTAGAAGAAATATTTGCCATTAGTT
*
82414464 GAATTCGCGTATAACAACAATTTTCAATCAAGCATAAATATGGCAACATATGAAGCTTTGTATGG
586 GAATTCGCGTATAACAACAATTTTCAATCAAGCATAAAGATGGCAACATATGAAGCTTTGTATGG
* * *
82414529 TCGAAAATGTCAAACTCTGTTATACTGGATTGAGCTTAGTGAGAAAAAGATTCATAGGCTTAATT
651 TCAAAAATGTCAAACTCTGTTATACTGGACTGAGCTTAGTGAGAAAAAGATTCACAGGCTTAATT
82414594 TGATTAGAGAGAGTGAGAATAAGGTGAAAGTAATTCACGACAATTTGAAAGTAGCTTCAGATCGA
716 TGATTAGAGAGAGTGAGAATAAGGTGAAAGTAATTCACGACAATTTGAAAGTAGCTTCAGATCGA
* *
82414659 CAGAAATCGTATGTGGATTTGAAATGCAAAGACATTAAATTTCAAATCGGTGACAAAGTATTTTT
781 CAGAAATCGCATGTGGATTTGAAACGCAAAGACATTAAATTTCAAATCGGTGACAAAGTATTTTT
82414724 GAAAGATAAACATTAAATTTCAAATCGGTTGTA
846 GAAAGATAAACATTAAATTTCAAATCGGTTGTA
** *
82414757 ACAGTGGTTGTTTATCTGTTCATTCGGGGAGGACAAAAATGTATAATGATTTGAAGTAATTATAC
1 ACAGTGGTTGTTTATCCATTCATTCGGGGAGGACAAAAATGTATAATGATTTGAAATAATTATAC
82414822 TGGTGGTCGGGCATGAAACAAGACATTTCTAAGTTTGTGTCGAGATGTTTGGTTTGTCAGCAAGT
66 TGGTGGTCGGGCATGAAACAAGACATTTCTAAGTTTGTGTCGAGATGTTTGGTTTGTCAGCAAGT
* *
82414887 TAAATCTGAACATTAGGTGCCATCAAGATTGTTACAACTAGTAATGATACCAGAGTGGAAATGGG
131 TAAAGCTGAACATTAGGTGCCATCAAGATTGTTACAACCAGTAATGATACCAGAGTGGAAATGGG
82414952 ATAGAGTCACGATGGATTTTGTATCAGGTTTGCCTCTGTCTTCGAAAAGAAACATGCTATTTGGG
196 ATAGAGTCACGATGGATTTTGTATCAGGTTTGCCTCTGTCTTCGAAAAGAAACATGCTATTTGGG
* * **
82415017 TTGTTGTTGATCGACTGAA-AAAGTCTACACATTTCATTCTGGTACGTATAGACTATGCTTTTGA
261 TTGTCGTTGATCGACT-AACAAAGTCTACACATTTCATTCTGGTACGTATAGACTATACGCTTGA
* *
82415081 TAGATTAGCAGAGTTGTATATTACTGAGATCATTAGATTGCACGGGTGCTAGTTTCGATTATTTC
325 TAGATTAGCAGAGTTGTATATTACTGAGATCATTAGATTGCACAGGTGCCAGTTTCGATTATTTC
* * *
82415146 GGATAGAGATCCGAGGTTTACGTCACGATTTTGGAAGAAACTGCAAGAAGCTTTGGGTACGCGGT
390 GGATAGAGATCCGAGGTTTACATCACAATTTTAGAAGAAACTGCAAGAAGCTTTGGGTACGCGGT
* * ** *
82415211 TGAAATTTAGTATCGCATTTCATCCGCAAACCGATGTTCAGTCTGGAAGAGTAATTTAGATTCTT
455 TGAAATTTAGTACCGCATTTCATCCGCAAACCAACATTCAGTCTGAAAGAGTAATTTAGATTCTT
* *
82415276 GAAGATATGCTTCGTTATTGTGTTTTAGAATTTAAAAGAAACTAGAAGAAATATTTGCCATTAGT
520 GAAGATATGCTTCGTTACTATGTTTTAGAATTTAAAAGAAACTAGAAGAAATATTTGCCATTAGT
* * *
82415341 TGAATTCGCGTATAACAACAGTTTTCAATCGAGCATAAAGATGGCACCATATGAAGCTTTGTATG
585 TGAATTCGCGTATAACAACAATTTTCAATCAAGCATAAAGATGGCAACATATGAAGCTTTGTATG
* *
82415406 GTCAAAAATGTCAAACTCTGTTATACTGGACTGAGCTTAGTGAGAAAAAGATTCACGGGCTTGAT
650 GTCAAAAATGTCAAACTCTGTTATACTGGACTGAGCTTAGTGAGAAAAAGATTCACAGGCTTAAT
*
82415471 TTGATTAGAGAGAGTGAGGATAAGGTGAAAGTAATTCACGACAATTTGAAAGTAGCTTCAGATCG
715 TTGATTAGAGAGAGTGAGAATAAGGTGAAAGTAATTCACGACAATTTGAAAGTAGCTTCAGATCG
*
82415536 ACAGAAATCGCATGCT-GATTTGAAACGCAAAGACGTTAAATTTCAAATCGGTGACAAAGTATTT
780 ACAGAAATCGCATG-TGGATTTGAAACGCAAAGACATTAAATTTCAAATCGGTGACAAAGTATTT
82415600 TTGAAAG
844 TTGAAAG
82415607 TATCTTCATG
Statistics
Matches: 801, Mismatches: 47, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
878 798 1.00
879 3 0.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (878 bp):
ACAGTGGTTGTTTATCCATTCATTCGGGGAGGACAAAAATGTATAATGATTTGAAATAATTATAC
TGGTGGTCGGGCATGAAACAAGACATTTCTAAGTTTGTGTCGAGATGTTTGGTTTGTCAGCAAGT
TAAAGCTGAACATTAGGTGCCATCAAGATTGTTACAACCAGTAATGATACCAGAGTGGAAATGGG
ATAGAGTCACGATGGATTTTGTATCAGGTTTGCCTCTGTCTTCGAAAAGAAACATGCTATTTGGG
TTGTCGTTGATCGACTAACAAAGTCTACACATTTCATTCTGGTACGTATAGACTATACGCTTGAT
AGATTAGCAGAGTTGTATATTACTGAGATCATTAGATTGCACAGGTGCCAGTTTCGATTATTTCG
GATAGAGATCCGAGGTTTACATCACAATTTTAGAAGAAACTGCAAGAAGCTTTGGGTACGCGGTT
GAAATTTAGTACCGCATTTCATCCGCAAACCAACATTCAGTCTGAAAGAGTAATTTAGATTCTTG
AAGATATGCTTCGTTACTATGTTTTAGAATTTAAAAGAAACTAGAAGAAATATTTGCCATTAGTT
GAATTCGCGTATAACAACAATTTTCAATCAAGCATAAAGATGGCAACATATGAAGCTTTGTATGG
TCAAAAATGTCAAACTCTGTTATACTGGACTGAGCTTAGTGAGAAAAAGATTCACAGGCTTAATT
TGATTAGAGAGAGTGAGAATAAGGTGAAAGTAATTCACGACAATTTGAAAGTAGCTTCAGATCGA
CAGAAATCGCATGTGGATTTGAAACGCAAAGACATTAAATTTCAAATCGGTGACAAAGTATTTTT
GAAAGATAAACATTAAATTTCAAATCGGTTGTA
Found at i:82424738 original size:7 final size:7
Alignment explanation
Indices: 82424726--82424752 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
82424716 TCTTGTCGAT
82424726 GAGATTA
1 GAGATTA
82424733 GAGATTA
1 GAGATTA
82424740 GAGATTA
1 GAGATTA
82424747 GAGATT
1 GAGATT
82424753 GAGTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30
Consensus pattern (7 bp):
GAGATTA
Found at i:82427562 original size:117 final size:117
Alignment explanation
Indices: 82427351--82427584 Score: 387
Period size: 117 Copynumber: 2.0 Consensus size: 117
82427341 TAGCAGACGA
*
82427351 GCGTGTGACTTGGCCGTGTGACTTCAATTTCTTCATGCATTAAAAGTCAAAGAGTTACACGGGTT
1 GCGTGTGACTTGGCCGTGTGACTTCAATTTCTTCATGCATTAAAAGTCAAAGAGTTACACGGGAT
* * *
82427416 AGGGACACGGGCATGTGTAGTACACGGCCTGACCACATGTGCGTGTCTCTAG
66 AAGGACACGGGCATGTGCAGTACACGGCCTGACCACATGTGCGTGTCCCTAG
* *
82427468 GCGTGTGACTTGGCCGTGTGACTTCAATTTCTTCATGCTTTAAAAGTCAGAGAGTTACACGGGAT
1 GCGTGTGACTTGGCCGTGTGACTTCAATTTCTTCATGCATTAAAAGTCAAAGAGTTACACGGGAT
* * *
82427533 AAGGATACGGGCATGTGCAGTACATGGCCTGACCACATGTGTGTGTCCCTAG
66 AAGGACACGGGCATGTGCAGTACACGGCCTGACCACATGTGCGTGTCCCTAG
82427585 ACCACACGGG
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
117 108 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (117 bp):
GCGTGTGACTTGGCCGTGTGACTTCAATTTCTTCATGCATTAAAAGTCAAAGAGTTACACGGGAT
AAGGACACGGGCATGTGCAGTACACGGCCTGACCACATGTGCGTGTCCCTAG
Found at i:82436742 original size:18 final size:18
Alignment explanation
Indices: 82436719--82436756 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
82436709 AAGTGAGAAC
82436719 CTTTATCACTAATAATAG
1 CTTTATCACTAATAATAG
82436737 CTTTATCACTAATAATAG
1 CTTTATCACTAATAATAG
82436755 CT
1 CT
82436757 CTTAGTGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.39
Consensus pattern (18 bp):
CTTTATCACTAATAATAG
Found at i:82440010 original size:28 final size:28
Alignment explanation
Indices: 82439970--82440055 Score: 145
Period size: 28 Copynumber: 3.1 Consensus size: 28
82439960 TGGGAAATAG
*
82439970 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGTCTGATGGGCCATATGAATGTGA
82439998 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGTCTGATGGGCCATATGAATGTGA
* *
82440026 TTGGGTCTGATGGGCCATGTGAATGAGA
1 TTGGGTCTGATGGGCCATATGAATGTGA
82440054 TT
1 TT
82440056 TGGCCTAAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.31
Consensus pattern (28 bp):
TTGGGTCTGATGGGCCATATGAATGTGA
Found at i:82440417 original size:27 final size:27
Alignment explanation
Indices: 82440378--82440929 Score: 604
Period size: 27 Copynumber: 20.7 Consensus size: 27
82440368 TAATAAAGAG
* * *
82440378 AAATTACAGAAATACCCCCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
***
82440405 AAATTATTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
82440432 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
82440459 AAATTACCGAAATACCCTC-AATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
82440485 AAATTACTAAAATACCCTC-AGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
* * * *
82440512 AAATTATCAAAATACCC-CAATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
82440538 AAATTATCGAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
82440565 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
82440592 AAATTACCGAAATACCCTC-AATTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
82440618 AAATTACTAAAATACCCTC-AGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
* * * *
82440645 AAATTATCAAAATACCC-CAATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
82440671 AAATTATCGAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
*
82440698 AAATTACCGAAATACCCTCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
82440725 AAATTATCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
82440752 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
82440779 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
82440806 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
82440833 AAATTACCGAAATA-CCTCAAATTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * *
82440859 AAATTACTAAAACACCCCCGATTTGT-
1 AAATTACCGAAATACCCTCGATTTGTA
* *
82440885 AAATTATCGAAATACCCT-TATATTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
82440912 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
82440930 TTAGTGTAAA
Statistics
Matches: 449, Mismatches: 65, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
25 2 0.00
26 130 0.29
27 315 0.70
28 2 0.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:82440511 original size:53 final size:53
Alignment explanation
Indices: 82440378--82440929 Score: 569
Period size: 53 Copynumber: 10.3 Consensus size: 53
82440368 TAATAAAGAG
* * * *** *
82440378 AAATTACAGAAATACCCCCAATTTGTAAAATTATTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AATTGTA
*
82440432 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTA
** * * *
82440485 AAATTACTAAAATACCCTC-AGTTTGTAAAATTATCAAAATACCC-CAATTTATA
1 AAATTACCGAAATACCCTCGA-TTTGTAAAATTACCGAAATACCCTCAA-TTGTA
* * *
82440538 AAATTATCGAAATACCC-CTGATTTGTGAAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTC-AATTGTA
* * ** *
82440592 AAATTACCGAAATACCCTC-AATTGTGAAATTACTAAAATACCCTCAGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCA-ATTGTA
* * * * * * * *
82440645 AAATTATCAAAATACCC-CAATTTATAAAATTATCGAAATACCCCTGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATA-CCCTCAATTGTA
* * *
82440698 AAATTACCGAAATACCCTCGATTTATAAAATTATCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAA-TTGTA
* * * *
82440752 AAATTACCAAAACACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AATTGTA
*
82440806 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATA-CCTCAAATTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-AATTGTA
** * * * *
82440859 AAATTACTAAAACACCCCCGATTTGT-AAATTATCGAAATACCCTTATATTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCA-ATTGTA
82440912 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
82440930 TTAGTGTAAA
Statistics
Matches: 416, Mismatches: 67, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
52 21 0.05
53 218 0.52
54 174 0.42
55 3 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTA
Found at i:82440631 original size:133 final size:133
Alignment explanation
Indices: 82440378--82440865 Score: 734
Period size: 133 Copynumber: 3.7 Consensus size: 133
82440368 TAATAAAGAG
* **
82440378 AAATTA-CAGAAATACCCCCAATTTGTAAAATTATTAAAATACCCTCGATTTGTAAAATTACCGA
1 AAATTATCA-AAATA-CCCCAATTTATAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGA
82440442 AATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTGAAATTACTAAAATACCCTCAGT
64 AATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTGAAATTACTAAAATACCCTCAGT
82440507 TTGTA
129 TTGTA
*
82440512 AAATTATCAAAATACCCCAATTTATAAAATTATCGAAATACCC-CTGATTTGTGAAATTACCGAA
1 AAATTATCAAAATACCCCAATTTATAAAATTATCGAAATACCCTC-GATTTGTAAAATTACCGAA
82440576 ATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTGAAATTACTAAAATACCCTCAGTT
65 ATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTGAAATTACTAAAATACCCTCAGTT
82440641 TGTA
130 TGTA
*
82440645 AAATTATCAAAATACCCCAATTTATAAAATTATCGAAATACCC-CTGATTTGTGAAATTACCGAA
1 AAATTATCAAAATACCCCAATTTATAAAATTATCGAAATACCCTC-GATTTGTAAAATTACCGAA
* * * * * *
82440709 ATACCCTCGATTTATAAAATTATCGAAACACCCTCAATTTGTAAAATTACCAAAACACCCTC-GA
65 ATACCCTCGATTTGTAAAATTACCGAAATACCCTCAA-TTGTGAAATTACTAAAATACCCTCAG-
82440773 TTTGTA
128 TTTGTA
* * *
82440779 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAA
1 AAATTATCAAAATACCC-CAATTTATAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAA
* *
82440844 ATA-CCTCAAATTGTAAAATTAC
65 ATACCCTCGATTTGTAAAATTAC
82440866 TAAAACACCC
Statistics
Matches: 330, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
132 1 0.00
133 212 0.64
134 69 0.21
135 47 0.14
136 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (133 bp):
AAATTATCAAAATACCCCAATTTATAAAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAA
TACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTGTGAAATTACTAAAATACCCTCAGTTT
GTA
Found at i:82440946 original size:26 final size:27
Alignment explanation
Indices: 82440892--82440967 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
82440882 TGTAAATTAT
* **
82440892 CGAAATACCCTTATATTGTAAAATTAC
1 CGAAATACCCTTATAGTGTAAAAGGAC
82440919 CGAAATACCCTT-TAGTGTAAAAGGAC
1 CGAAATACCCTTATAGTGTAAAAGGAC
** * *
82440945 CGTCATACCCCTATAGGGTAAAA
1 CGAAATACCCTTATAGTGTAAAA
82440968 TGACTGTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 20 0.49
27 21 0.51
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTTATAGTGTAAAAGGAC
Found at i:82445990 original size:20 final size:21
Alignment explanation
Indices: 82445951--82445991 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
82445941 ACTTGTTTAA
*
82445951 CTATCAACAACTATTTAAAAT
1 CTATCAACAAATATTTAAAAT
*
82445972 CTATCATCAAATA-TTAAAAT
1 CTATCAACAAATATTTAAAAT
82445992 TCATACTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (21 bp):
CTATCAACAAATATTTAAAAT
Found at i:82450377 original size:27 final size:27
Alignment explanation
Indices: 82450346--82450446 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
82450336 CTGCCAGAAT
* *
82450346 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
* *
82450373 AGATAATCATGGCAGAGCCACTAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
82450400 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
82450427 AGATAATTGTGGCATAGCCA
1 AGATAA-TGTGGCAGAGCCA
82450447 TCAGGACGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 1 0.02
27 47 0.75
28 15 0.24
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:82458494 original size:36 final size:37
Alignment explanation
Indices: 82458453--82458531 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 37
82458443 AATATCTATG
82458453 AAGAGATGATGCTAGGCTTGGGGAATGGAAAATACT-
1 AAGAGATGATGCTAGGCTTGGGGAATGGAAAATACTA
*
82458489 AAGAGATGATGCTAGGCTTGGGGAATGGAAAATGCTA
1 AAGAGATGATGCTAGGCTTGGGGAATGGAAAATACTA
82458526 AAGAGA
1 AAGAGA
82458532 ATTGAAAGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 35 0.85
37 6 0.15
ACGTcount: A:0.38, C:0.08, G:0.34, T:0.20
Consensus pattern (37 bp):
AAGAGATGATGCTAGGCTTGGGGAATGGAAAATACTA
Found at i:82460674 original size:45 final size:45
Alignment explanation
Indices: 82460610--82460827 Score: 284
Period size: 45 Copynumber: 4.9 Consensus size: 45
82460600 TATTGTATGG
82460610 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGA
* * *
82460655 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGA
* **
82460700 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATTCCGGTGCGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGA
* *
82460745 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGT-AAGA
* * *
82460790 TGA-AATT-GGG-CTTCGAGCCTAGCAGGCGA-AATACCGGT
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGT
82460828 GGATGAATTC
Statistics
Matches: 156, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
42 8 0.05
43 17 0.11
44 2 0.01
45 128 0.82
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGA
Found at i:82460763 original size:90 final size:90
Alignment explanation
Indices: 82460610--82460827 Score: 318
Period size: 90 Copynumber: 2.5 Consensus size: 90
82460600 TATTGTATGG
*
82460610 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGATACTATTCGGGCCTTTGAGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGATACTATTCAGGCCTTTGAGC
* *
82460675 CTAGCAGGCTATGATGCCGGTGAGA
66 CTAGCAGGCTATAATGCCGGTGAAA
* **
82460700 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATTCCGGTGCGATACTATTCAGGCCTTTGAGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGATACTATTCAGGCCTTTGAGC
82460765 CTAGCAGGCTATAATGCCGGTGAAA
66 CTAGCAGGCTATAATGCCGGTGAAA
* * *
82460790 TGA-AATT-GGG-CTTCGAGCCTAGCAGGCGA-AATACCGGT
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGT
82460828 GGATGAATTC
Statistics
Matches: 117, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
87 8 0.07
88 17 0.15
89 3 0.03
90 88 0.75
91 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (90 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTAAGATACTATTCAGGCCTTTGAGC
CTAGCAGGCTATAATGCCGGTGAAA
Found at i:82467381 original size:40 final size:40
Alignment explanation
Indices: 82467319--82467522 Score: 322
Period size: 40 Copynumber: 5.1 Consensus size: 40
82467309 AAACCAAGTA
* * *
82467319 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
82467358 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82467398 CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82467438 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82467478 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82467518 CCTTC
1 CCTTC
82467523 ATTATCATCC
Statistics
Matches: 153, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.08
40 140 0.92
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82471837 original size:21 final size:22
Alignment explanation
Indices: 82471800--82471848 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
82471790 AAAATATAAG
82471800 ATGATAAACATATTTAA-TAATA
1 ATGA-AAACATATTTAATTAATA
82471822 CATGAAAACATA-TTAATTAATA
1 -ATGAAAACATATTTAATTAATA
82471844 ATGAA
1 ATGAA
82471849 TTTTGAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.36
22 12 0.48
23 4 0.16
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (22 bp):
ATGAAAACATATTTAATTAATA
Found at i:82472038 original size:23 final size:22
Alignment explanation
Indices: 82472000--82472121 Score: 73
Period size: 23 Copynumber: 5.2 Consensus size: 22
82471990 AACAATATAC
* * *
82472000 ATAAAAAAATATATAATAGATA
1 ATAAAAATATAAATAATAAATA
* *
82472022 ATAAAAATATGAAATAATATATT
1 ATAAAAATAT-AAATAATAAATA
* *
82472045 GTTAAAATATAAAATAATATAATA
1 ATAAAAATAT-AAATAATA-AATA
* ** *
82472069 ATGTAAAAATATATAAATATTATGTG
1 A--T-AAAA-ATATAAATAATAAATA
82472095 ATAAAAATATAATATAATAAATA
1 ATAAAAATATAA-ATAATAAATA
82472118 ATAA
1 ATAA
82472122 GTAATGATAT
Statistics
Matches: 74, Mismatches: 19, Indels: 13
0.70 0.18 0.12
Matches are distributed among these distances:
22 15 0.20
23 39 0.53
24 3 0.04
26 3 0.04
27 10 0.14
28 4 0.05
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
ATAAAAATATAAATAATAAATA
Found at i:82472184 original size:5 final size:5
Alignment explanation
Indices: 82472174--82472241 Score: 52
Period size: 5 Copynumber: 13.4 Consensus size: 5
82472164 AAATATGAAG
* *
82472174 TAATA TAATA TAATA AAATA TAAGTA -AATAA TAATA TAAAA T-ATA TAATACA
1 TAATA TAATA TAATA TAATA TAA-TA TAAT-A TAATA TAATA TAATA TAAT--A
*
82472226 TAAAA TAATA T-ATA TA
1 TAATA TAATA TAATA TA
82472242 CAATTTAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
4 8 0.16
5 33 0.66
6 5 0.10
7 4 0.08
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (5 bp):
TAATA
Found at i:82472212 original size:23 final size:24
Alignment explanation
Indices: 82472100--82472218 Score: 104
Period size: 25 Copynumber: 4.9 Consensus size: 24
82472090 ATGTGATAAA
82472100 AATATAATATAAT-AAATAATAAGT
1 AATATAATATAATAAAAT-ATAAGT
** *
82472124 AATGAT-ATATGTTAAAATATATATT
1 AAT-ATAATATAATAAAATATA-AGT
*
82472149 AATATGATTATAGA-AAAATATGAAGT
1 AATAT-AATATA-ATAAAATAT-AAGT
82472175 AATATAATATAATAAAATATAAGT
1 AATATAATATAATAAAATATAAGT
82472199 AA-ATAATA-ATATAAAATATA
1 AATATAATATA-ATAAAATATA
82472219 TAATACATAA
Statistics
Matches: 78, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
22 1 0.01
23 16 0.21
24 20 0.26
25 23 0.29
26 17 0.22
27 1 0.01
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (24 bp):
AATATAATATAATAAAATATAAGT
Found at i:82472228 original size:16 final size:18
Alignment explanation
Indices: 82472209--82472243 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
82472199 AAATAATAAT
82472209 ATAAAAT-ATATA-ATAC
1 ATAAAATAATATATATAC
82472225 ATAAAATAATATATATAC
1 ATAAAATAATATATATAC
82472243 A
1 A
82472244 ATTTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 5 0.29
18 5 0.29
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAATAATATATATAC
Found at i:82472228 original size:21 final size:20
Alignment explanation
Indices: 82472178--82472241 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
82472168 ATGAAGTAAT
*
82472178 ATAATATAATAAAATATAAGTAA
1 ATAATAAAATAAAATAT-A-T-A
*
82472201 ATAATAATATAAAATATATA
1 ATAATAAAATAAAATATATA
*
82472221 ATACATAAAATAATATATATA
1 ATA-ATAAAATAAAATATATA
82472242 CAATTTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.11
21 16 0.44
22 1 0.03
23 15 0.42
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAATAAAATAAAATATATA
Found at i:82474326 original size:206 final size:206
Alignment explanation
Indices: 82473957--82474508 Score: 865
Period size: 206 Copynumber: 2.7 Consensus size: 206
82473947 CTGCTTCTTC
* *
82473957 GATTTGTTCTCTGACAATACAGAGTTGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGCGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
* * * *
82474022 AAACCAAATCAGCTATG-TCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGA
66 AAGCCAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGA
* * * * * ** *
82474086 TCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTG-TCCTCCGTCGAATATGGA
130 TCTACTTCAGTATAAACAGCTAAAGGCCAGATCTGCTATGTATCTGCT-CTCCGTCGAATATGGA
82474150 GACGCCAAACTTT
194 GACGCCAAACTTT
* *
82474163 GATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
* *
82474228 AAGCTAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGAT
66 AAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
*
82474293 CTACTTCAGTATAAACAGCTAAAGGCCAGATCTGCTATGTATCTGCTCTCCGTTGAATATGGAGA
131 CTACTTCAGTATAAACAGCTAAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATGGAGA
82474358 CGCCAAACTTT
196 CGCCAAACTTT
* *
82474369 GATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
*
82474434 AAGCCAAATCAGCTATGATTTCAATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
82474499 CTTACTTCAG
131 C-TACTTCAG
82474509 CCATATCTAC
Statistics
Matches: 317, Mismatches: 26, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
206 307 0.97
207 10 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACGTGA
AAGCCAAATCAGCTATGATTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
CTACTTCAGTATAAACAGCTAAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATGGAGA
CGCCAAACTTT
Found at i:82486409 original size:21 final size:22
Alignment explanation
Indices: 82486376--82486419 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
82486366 ATAAGATAAT
*
82486376 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
82486398 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
82486419 A
1 A
82486420 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:82486702 original size:49 final size:45
Alignment explanation
Indices: 82486576--82486702 Score: 111
Period size: 50 Copynumber: 2.8 Consensus size: 45
82486566 ATATACATAA
* * *
82486576 AAAAATATAATA-GAT-AATAATAAAATGAAAT-AATATATTGCT
1 AAAAATATAATATAATAAATAATAAAATGATATAAATATATTGAT
*
82486618 -AAAATATAAAATAATATAATAATGTAAAAAT-ATATAAATATTATGTGAT
1 AAAAATATAATATAATA-AATAA--T-AAAATGATATAAATA-TAT-TGAT
82486667 AAAAATATAATATAATAAATAATAAGTAATGATATA
1 AAAAATATAATATAATAAATAATAA--AATGATATA
82486703 TGTTAAAATA
Statistics
Matches: 67, Mismatches: 5, Indels: 19
0.74 0.05 0.21
Matches are distributed among these distances:
41 10 0.15
42 2 0.03
44 5 0.07
46 6 0.09
47 10 0.15
48 6 0.09
49 13 0.19
50 15 0.22
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (45 bp):
AAAAATATAATATAATAAATAATAAAATGATATAAATATATTGAT
Found at i:82486754 original size:5 final size:5
Alignment explanation
Indices: 82486744--82486811 Score: 52
Period size: 5 Copynumber: 13.4 Consensus size: 5
82486734 AAATATGAAG
* *
82486744 TAATA TAATA TAATA AAATA TAAGTA -AATAA TAATA TAAAA T-ATA TAATACA
1 TAATA TAATA TAATA TAATA TAA-TA TAAT-A TAATA TAATA TAATA TAAT--A
*
82486796 TAAAA TAATA T-ATA TA
1 TAATA TAATA TAATA TA
82486812 CAATTTAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
4 8 0.16
5 33 0.66
6 5 0.10
7 4 0.08
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (5 bp):
TAATA
Found at i:82486775 original size:28 final size:25
Alignment explanation
Indices: 82486748--82486807 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
82486738 ATGAAGTAAT
82486748 ATAATATAATAAAATATAAGTAAAT-A
1 ATAATATAA-AAAATATAA-TAAATAA
* *
82486774 ATAATATAAAATATATAATACATAAA
1 ATAATATAAAAAATATAATAAAT-AA
82486800 ATAATATA
1 ATAATATA
82486808 TATACAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.13
25 8 0.27
26 18 0.60
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (25 bp):
ATAATATAAAAAATATAATAAATAA
Found at i:82486798 original size:16 final size:18
Alignment explanation
Indices: 82486779--82486813 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
82486769 AAATAATAAT
82486779 ATAAAAT-ATATA-ATAC
1 ATAAAATAATATATATAC
82486795 ATAAAATAATATATATAC
1 ATAAAATAATATATATAC
82486813 A
1 A
82486814 ATTTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 5 0.29
18 5 0.29
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAATAATATATATAC
Found at i:82486798 original size:21 final size:20
Alignment explanation
Indices: 82486748--82486811 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
82486738 ATGAAGTAAT
*
82486748 ATAATATAATAAAATATAAGTAA
1 ATAATAAAATAAAATAT-A-T-A
*
82486771 ATAATAATATAAAATATATA
1 ATAATAAAATAAAATATATA
*
82486791 ATACATAAAATAATATATATA
1 ATA-ATAAAATAAAATATATA
82486812 CAATTTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.11
21 16 0.44
22 1 0.03
23 15 0.42
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAATAAAATAAAATATATA
Found at i:82486802 original size:23 final size:26
Alignment explanation
Indices: 82486669--82486791 Score: 84
Period size: 25 Copynumber: 4.9 Consensus size: 26
82486659 TATGTGATAA
82486669 AAAT-ATAATATAAT-AAATAATAAGT
1 AAATAATAATATAATAAAAT-ATAAGT
* ** *
82486694 -AATGAT-ATATGTTAAAATATATATT
1 AAATAATAATATAATAAAATATA-AGT
* *
82486719 AATATGATAATA-GA-AAAATATGAAGT
1 AA-ATAATAATATAATAAAATAT-AAGT
82486745 -AAT-ATAATATAATAAAATATAAGT
1 AAATAATAATATAATAAAATATAAGT
*
82486769 AAATAATAATATAA-AATATATAA
1 AAATAATAATATAATAAAATATAA
82486792 TACATAAAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 22
0.73 0.06 0.20
Matches are distributed among these distances:
23 6 0.08
24 18 0.22
25 27 0.34
26 19 0.24
27 7 0.09
28 3 0.04
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (26 bp):
AAATAATAATATAATAAAATATAAGT
Found at i:82489288 original size:31 final size:31
Alignment explanation
Indices: 82489246--82489307 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
82489236 AAAACCTTTC
* *
82489246 CCTATCCACTTCTCATCCATCATCCTCTCTT
1 CCTATCCACTTCTCATCCACCAGCCTCTCTT
*
82489277 CCTATCTACTTCTCATCCACCAGCCTCTCTT
1 CCTATCCACTTCTCATCCACCAGCCTCTCTT
82489308 TCTTTGTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.16, C:0.45, G:0.02, T:0.37
Consensus pattern (31 bp):
CCTATCCACTTCTCATCCACCAGCCTCTCTT
Found at i:82492261 original size:34 final size:35
Alignment explanation
Indices: 82492217--82492282 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
82492207 CTACGAAAAT
*
82492217 TTTAACTTTAAAA-CTAAATATAA-AAATTAATGAA
1 TTTAAATTTAAAATCTAAA-ATAATAAATTAATGAA
*
82492251 TTTAAATTTAAAATTTAAAATAATAAATTAAT
1 TTTAAATTTAAAATCTAAAATAATAAATTAAT
82492283 AACATAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (35 bp):
TTTAAATTTAAAATCTAAAATAATAAATTAATGAA
Found at i:82492825 original size:43 final size:43
Alignment explanation
Indices: 82492759--82492844 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
82492749 CACATTGCAA
* * *
82492759 GGTAATAAAACATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
* *
82492802 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
82492845 ATAATGAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:82497915 original size:27 final size:27
Alignment explanation
Indices: 82497884--82497968 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
82497874 GCTTCCAGAA
* *
82497884 CAGTAAATGTGGCAAAGCCACCAGTAT
1 CAGTAAATGTGACATAGCCACCAGTAT
* *
82497911 CAGTAATTATGACATAGCCACCAGTAAT
1 CAGTAAATGTGACATAGCCACCAGT-AT
*
82497939 -AGTGAATGTGACATAGCCACCAGTA-
1 CAGTAAATGTGACATAGCCACCAGTAT
82497964 CAGTA
1 CAGTA
82497969 CTTCCTCCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
26 4 0.08
27 42 0.88
28 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (27 bp):
CAGTAAATGTGACATAGCCACCAGTAT
Found at i:82498173 original size:27 final size:27
Alignment explanation
Indices: 82498105--82498322 Score: 276
Period size: 27 Copynumber: 8.1 Consensus size: 27
82498095 GGCATAATCA
* * *
82498105 TCATATTACCATATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * *
82498132 TTA-TTTAACCTACAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
82498158 TCATTTTACCTTACAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
82498185 TCATTTTACCCTAGAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
**
82498212 TCATTTTACCCTACAAAGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
82498239 TCATTTTACCCTATAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
**
82498266 TCATTTTACCCTACAGGGGTATTACAA
1 TCATTTTACCCTACAGGGGTATTACGG
82498293 TCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
82498320 TCA
1 TCA
82498323 GATAACGACC
Statistics
Matches: 163, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 19 0.12
27 144 0.88
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:82503942 original size:35 final size:35
Alignment explanation
Indices: 82503896--82503965 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
82503886 CGTACGAGTC
82503896 TAGCTATACATGCCATATAATTGGTATCAAAGCTA
1 TAGCTATACATGCCATATAATTGGTATCAAAGCTA
82503931 TAGCTATACATGCCATATAATTGGTATCAAAGCTA
1 TAGCTATACATGCCATATAATTGGTATCAAAGCTA
82503966 AGTGACTCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (35 bp):
TAGCTATACATGCCATATAATTGGTATCAAAGCTA
Found at i:82513692 original size:40 final size:39
Alignment explanation
Indices: 82513637--82513774 Score: 190
Period size: 40 Copynumber: 3.5 Consensus size: 39
82513627 CGGATGATAA
*
82513637 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
82513677 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
82513717 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
*
82513757 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
82513775 TACTTGGTTG
Statistics
Matches: 91, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
39 17 0.19
40 72 0.79
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:82523109 original size:40 final size:40
Alignment explanation
Indices: 82523054--82523137 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
82523044 TTCTTGCTCG
82523054 TTCTCCGTGTATCTTAAGCTTCGCGTTATTTCTCTTTGGT
1 TTCTCCGTGTATCTTAAGCTTCGCGTTATTTCTCTTTGGT
82523094 TTCTCCGTGTATCTTAAGCTTCGCGTTATTTCTCTTTGGT
1 TTCTCCGTGTATCTTAAGCTTCGCGTTATTTCTCTTTGGT
82523134 TTCT
1 TTCT
82523138 ACATACTGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.10, C:0.23, G:0.17, T:0.51
Consensus pattern (40 bp):
TTCTCCGTGTATCTTAAGCTTCGCGTTATTTCTCTTTGGT
Found at i:82526274 original size:13 final size:13
Alignment explanation
Indices: 82526256--82526281 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82526246 CTCGGCAGGC
82526256 ACACGCCCGTGTG
1 ACACGCCCGTGTG
82526269 ACACGCCCGTGTG
1 ACACGCCCGTGTG
82526282 CGACTACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:82536288 original size:48 final size:48
Alignment explanation
Indices: 82536222--82536441 Score: 282
Period size: 48 Copynumber: 4.6 Consensus size: 48
82536212 TGTGTAACCA
* * *
82536222 TGTAAGACCATATCTGGGATATGGCATCGACATTATTATGTGATCCCG
1 TGTAAGACCATGTCTGGGATATGGCATCGACATTATTATGTGAGCCAG
* * * * *
82536270 TATAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGATATGGCATCGACATTATTATGTGAGCCAG
* * ** *
82536318 TGTAAGACCATGTTTGGGATATGGTATCGGTATTGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGATATGGCATCGACATTATTATGTGAGCCAG
*
82536366 TGTAAGA-CATGTCT-GGATCATGGCATCGACATCATTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGAT-ATGGCATCGACATTATTATGTGAGCCAG
*
82536413 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGATATGGCATCG
82536442 GCATGAGGCA
Statistics
Matches: 150, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
46 4 0.03
47 36 0.24
48 107 0.71
49 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGATATGGCATCGACATTATTATGTGAGCCAG
Found at i:82536419 original size:95 final size:96
Alignment explanation
Indices: 82536222--82536445 Score: 299
Period size: 95 Copynumber: 2.3 Consensus size: 96
82536212 TGTGTAACCA
* * * * *
82536222 TGTAAGACCATATCTGGGATATGGCATCGACATTATTATGTGATCCCGTATAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGATATGGCATCGGCATTATTATGTGAGCCAGTATAAGACCATGTCTGG
* **
82536287 GACATGGCATCGGCATTGTTATGTGAGCCAG
66 GACATGGCATCGACATCATTATGTGAGCCAG
* * * * *
82536318 TGTAAGACCATGTTTGGGATATGGTATCGGTATTGTTATGTGAGCCAGTGTAAGA-CATGTCT-G
1 TGTAAGACCATGTCTGGGATATGGCATCGGCATTATTATGTGAGCCAGTATAAGACCATGTCTGG
82536381 GATCATGGCATCGACATCATTATGTGAGCCAG
66 GA-CATGGCATCGACATCATTATGTGAGCCAG
*
82536413 TGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 TGTAAGACCATGTCTGGGATATGGCATCGGCAT
82536446 GAGGCATCTT
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
94 3 0.03
95 61 0.55
96 46 0.42
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGATATGGCATCGGCATTATTATGTGAGCCAGTATAAGACCATGTCTGG
GACATGGCATCGACATCATTATGTGAGCCAG
Found at i:82536524 original size:43 final size:42
Alignment explanation
Indices: 82536413--82536525 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 42
82536403 TGTGAGCCAG
* * *
82536413 TGTAAGACCATGTCTGGGACATGGCATCGGCATGAGGCATCT
1 TGTAAGACCATGTCTGGGACATGGCATCGACATGAGACATCA
* * **
82536455 TGTAAGACCATAG-CTGGGATATTGGCATCGATATGAGATTTCCA
1 TGTAAGACCAT-GTCTGGGACA-TGGCATCGACATGAGACAT-CA
82536499 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
82536526 TGGTACAATA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 18 0.31
43 22 0.37
44 19 0.32
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATGAGACATCA
Found at i:82551379 original size:12 final size:13
Alignment explanation
Indices: 82551357--82551385 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
82551347 TGATTAAATG
82551357 AATTAAAAAGCCA
1 AATTAAAAAGCCA
82551370 AATT-AAAAGCCA
1 AATTAAAAAGCCA
82551382 AATT
1 AATT
82551386 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:82552255 original size:42 final size:42
Alignment explanation
Indices: 82552196--82552352 Score: 165
Period size: 42 Copynumber: 3.7 Consensus size: 42
82552186 TTAGGGTTAT
* *
82552196 TGAGATTGCGTGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
82552238 TGAGACTT-CGTGTAAGACCATATCTGGAATACGGTATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
82552280 TGAGACTT-CGTGGAAGACCATAACTAGGCTATTGGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
82552323 CGAGATTACATGTAAGACTATATCTGGGAT
1 TGAGATTACGTGTAAGACCATATCTGGGAT
82552353 GTGGATTGGT
Statistics
Matches: 94, Mismatches: 18, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
42 63 0.67
43 31 0.33
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:82561542 original size:12 final size:12
Alignment explanation
Indices: 82561522--82561554 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
82561512 AGCCTCACAC
82561522 GGCCGTGTGCTA
1 GGCCGTGTGCTA
*
82561534 GGCCATGTGCTA
1 GGCCGTGTGCTA
82561546 GGCCGTGTG
1 GGCCGTGTG
82561555 AAAATTAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.24, G:0.42, T:0.24
Consensus pattern (12 bp):
GGCCGTGTGCTA
Found at i:82575439 original size:28 final size:28
Alignment explanation
Indices: 82575406--82575459 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
82575396 GATTTTGTAT
* * *
82575406 TGGGCTTAGGCCCACCTGATTCTGTTAA
1 TGGGCTAAGGCCCACCTAATACTGTTAA
82575434 TGGGCTAAGGCCCACCTAATACTGTT
1 TGGGCTAAGGCCCACCTAATACTGTT
82575460 TCTGTGATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (28 bp):
TGGGCTAAGGCCCACCTAATACTGTTAA
Found at i:82584553 original size:23 final size:23
Alignment explanation
Indices: 82584523--82584653 Score: 111
Period size: 23 Copynumber: 5.7 Consensus size: 23
82584513 CTGATGGATA
82584523 GTAAGCTCTAATGAGCTAAAACG
1 GTAAGCTCTAATGAGCTAAAACG
* * * *
82584546 GTAAGCTCTATTAAGCT-TAACA
1 GTAAGCTCTAATGAGCTAAAACG
* * *
82584568 GTAAGCTCTATTGAGCTGAATCG
1 GTAAGCTCTAATGAGCTAAAACG
* * * *
82584591 ATAAGCTCCAATGAGCTAAAGCA
1 GTAAGCTCTAATGAGCTAAAACG
* * * *
82584614 GCAAGCTCTTACGAGCTAAATCG
1 GTAAGCTCTAATGAGCTAAAACG
*
82584637 GTAAGCTCCAATGAGCT
1 GTAAGCTCTAATGAGCT
82584654 GTGGTGAGTT
Statistics
Matches: 82, Mismatches: 25, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
22 19 0.23
23 63 0.77
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTAAAACG
Found at i:82584577 original size:45 final size:46
Alignment explanation
Indices: 82584522--82584653 Score: 149
Period size: 45 Copynumber: 2.9 Consensus size: 46
82584512 GCTGATGGAT
* * * *
82584522 AGTAAGCTCTAATGAGCTAAAACGGTAAGCTCTATTAAGCTTAA-C
1 AGTAAGCTCTAATGAGCTAAATCGGTAAGCTCCAATAAGCTAAAGC
* * * *
82584567 AGTAAGCTCTATTGAGCTGAATCGATAAGCTCCAATGAGCTAAAGC
1 AGTAAGCTCTAATGAGCTAAATCGGTAAGCTCCAATAAGCTAAAGC
* * * *
82584613 AGCAAGCTCTTACGAGCTAAATCGGTAAGCTCCAATGAGCT
1 AGTAAGCTCTAATGAGCTAAATCGGTAAGCTCCAATAAGCT
82584654 GTGGTGAGTT
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
45 36 0.50
46 36 0.50
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTAAGCTCTAATGAGCTAAATCGGTAAGCTCCAATAAGCTAAAGC
Found at i:82593250 original size:31 final size:31
Alignment explanation
Indices: 82593205--82593266 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
82593195 TCGGGATTTA
*
82593205 AGCTTCCCAGGAAATAACTTCAACCTTGAAT
1 AGCTTCCCAAGAAATAACTTCAACCTTGAAT
*
82593236 AGCTTTCCAAGAAATAACTTCAACCTTGAAT
1 AGCTTCCCAAGAAATAACTTCAACCTTGAAT
82593267 TAAACAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.27
Consensus pattern (31 bp):
AGCTTCCCAAGAAATAACTTCAACCTTGAAT
Found at i:82600923 original size:56 final size:56
Alignment explanation
Indices: 82600866--82601129 Score: 334
Period size: 56 Copynumber: 4.7 Consensus size: 56
82600856 CATACAGGGT
* * * * * *
82600866 CTTACTCGTACACATATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGT
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
* *
82600922 CTTACTCGCACACATATATCAGAGTCACATATCGTTGCCAATGT-TTGAAACGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATT-AAACGTGGA
** * * *
82600978 CTTACTCGCACACATATATTGGAATCATATATCGATGTCAACGTATTAAATC-TGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAA-CGTGGA
* * * *
82601034 CTTACTCGCACACTTATATCAGAGTCATATATCGATGCCAATGTATGAAACGTGGA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
*
82601090 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCAGAGTCACATATCGATGCCA
82601130 TATATACATC
Statistics
Matches: 179, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
55 3 0.02
56 173 0.97
57 3 0.02
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (56 bp):
CTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:82601038 original size:112 final size:112
Alignment explanation
Indices: 82600866--82601129 Score: 402
Period size: 112 Copynumber: 2.4 Consensus size: 112
82600856 CATACAGGGT
* * * *
82600866 CTTACTCGTACACATATATCGGAATCACATATCAATGCCAACGTATTAAATGTGGTCTTACTCGC
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
* *
82600931 ACACATATATCAGAGTCACATATCGTTGCCAATGTTTGAAACGTGGA
66 ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
* * *
82600978 CTTACTCGCACACATATATTGGAATCATATATCGATGTCAACGTATTAAATCTGGACTTACTCGC
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
* *
82601043 ACACTTATATCAGAGTCATATATCGATGCCAATGTATGAAACGTGGA
66 ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
* * *
82601090 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCA
82601130 TATATACATC
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 135 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (112 bp):
CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAATCTGGACTTACTCGC
ACACATATATCAGAGTCACATATCGATGCCAATGTATGAAACGTGGA
Found at i:82607845 original size:46 final size:46
Alignment explanation
Indices: 82607792--82607967 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
82607782 TATTTGGGCA
82607792 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-CAAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAAGC
* *
82607837 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--AC-AAGC
* **
82607884 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAA-GC
* * *
82607932 -CTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82607968 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.58
47 33 0.29
48 4 0.04
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACAAGC
Found at i:82607947 original size:93 final size:92
Alignment explanation
Indices: 82607788--82607959 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 92
82607778 GGGATATTTG
82607788 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG-CCGAACTCGTTGAG
82607853 TTGAGTCCGAGTTCATGAGATGTAACTA
65 TTGAGTCCGAGTTCATGAGATGTAACTA
* * * *
82607881 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGC-CTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-CAA-GCGCCGAACTCGTTGA
82607945 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
82607960 GCTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
93 69 0.95
94 2 0.03
95 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCGCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTA
Found at i:82611839 original size:20 final size:20
Alignment explanation
Indices: 82611796--82611846 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
82611786 TTGATATGAT
* * * *
82611796 ATGCACATGACATGTATGAT
1 ATGCACATGATATATAGGAA
82611816 ATGCACATGATATATAGGAA
1 ATGCACATGATATATAGGAA
*
82611836 ATGCACGTGAT
1 ATGCACATGAT
82611847 GTATTCATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (20 bp):
ATGCACATGATATATAGGAA
Found at i:82611968 original size:25 final size:26
Alignment explanation
Indices: 82611897--82611981 Score: 140
Period size: 26 Copynumber: 3.3 Consensus size: 26
82611887 GAGAAAGTGC
82611897 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
82611923 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
82611949 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
82611972 AAAAGAGGCT
1 AAAAG-GGCT
82611982 AGGCCTCCAG
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
23 5 0.09
24 9 0.16
25 8 0.14
26 36 0.62
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:82611991 original size:25 final size:25
Alignment explanation
Indices: 82611897--82611993 Score: 126
Period size: 26 Copynumber: 3.8 Consensus size: 25
82611887 GAGAAAGTGC
82611897 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGC-TATGCCCCAGTTTATTG
82611923 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGC-TATGCCCCAGTTTATTG
*
82611949 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTATGCCCCAGTTTATTG
*
82611972 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
82611994 ACATGATAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.08
24 12 0.18
25 13 0.20
26 35 0.54
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATTG
Done.