Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 248 of 332
Found at i:82611992 original size:50 final size:52
Alignment explanation
Indices: 82611897--82611993 Score: 139
Period size: 50 Copynumber: 1.9 Consensus size: 52
82611887 GAGAAAGTGC
*
82611897 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTAGGCCCCAGTTTATTG
82611949 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGC-TAGGCCTCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCTTAGGCC-CCAGTT
82611994 ACATGATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
49 10 0.24
50 14 0.33
51 8 0.19
52 10 0.24
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTAGGCCCCAGTTTATTG
Found at i:82612600 original size:18 final size:18
Alignment explanation
Indices: 82612577--82612611 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82612567 ACTTAGGACA
*
82612577 TGTTTTCAAAACGACACT
1 TGTTTTCAAAACAACACT
*
82612595 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
82612612 AACGCTATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:82625827 original size:54 final size:54
Alignment explanation
Indices: 82625625--82625827 Score: 239
Period size: 54 Copynumber: 3.8 Consensus size: 54
82625615 ATGGCCATGG
* * * *
82625625 TAAGAAGACCAAATAGGGTAAGACCTAGTTTGGGACTATGGCATCATATGGGGA
1 TAAGAAGACCATATAGTGTAAGACCTAGTCTAGGACTATGGCATCATATGGGGA
* * *
82625679 TAAGAAGACCATATTA-TGTAAGACCTAGCCTAGGACCATGGCATCATAAGGGGA
1 TAAGAAGACCATA-TAGTGTAAGACCTAGTCTAGGACTATGGCATCATATGGGGA
* * *
82625733 TAAGAAGACCATATAGTGTAAGACCTTGTCT-GGAACTATGGCATCTTATGGGTA
1 TAAGAAGACCATATAGTGTAAGACCTAGTCTAGG-ACTATGGCATCATATGGGGA
* * * * *
82625787 TACGAAGACCACATAGTGCAAGACCTAGTCTAAGAGTATGG
1 TAAGAAGACCATATAGTGTAAGACCTAGTCTAGGACTATGG
82625828 GGTCATTTAA
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
53 4 0.03
54 119 0.94
55 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (54 bp):
TAAGAAGACCATATAGTGTAAGACCTAGTCTAGGACTATGGCATCATATGGGGA
Found at i:82629999 original size:45 final size:44
Alignment explanation
Indices: 82629897--82630003 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 44
82629887 GACTGGAAGG
* * *
82629897 AAAATGATGAAGACCATGGTTGAAAGCACTATGGCACTATACCGG
1 AAAATGAT-AAGACCATAGTTGAAAGCACTATGGCACCATACCGA
* *
82629942 AGAATAAATAAGACCATAGTTGAAAGACACTATGGCACCATACC-A
1 AAAAT-GATAAGACCATAGTTGAAAG-CACTATGGCACCATACCGA
82629987 AAAATGAGTAAGACCAT
1 AAAATGA-TAAGACCAT
82630004 GACTGAAAGA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
44 1 0.02
45 33 0.63
46 18 0.35
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.19
Consensus pattern (44 bp):
AAAATGATAAGACCATAGTTGAAAGCACTATGGCACCATACCGA
Found at i:82630042 original size:45 final size:44
Alignment explanation
Indices: 82629993--82630164 Score: 150
Period size: 45 Copynumber: 3.8 Consensus size: 44
82629983 ACCAAAAATG
* *
82629993 AGTAAGACCATGACTGAAAGATGTTAAGGCAGCACGATTCTCTTA
1 AGTAAGACCATGACTGAAAGATGTTATGGCAGCACGATTCT-TCA
* * * * *
82630038 AGTAAGACCATGATTGAAAGACT-TTATTGTAGCATGATTCTATCG
1 AGTAAGACCATGACTGAAAGA-TGTTATGGCAGCACGATTCT-TCA
* * * * *
82630083 AGTACGACCATGGCTGAAAGATGTTGTGGCATCACTATTCTTCCA
1 AGTAAGACCATGACTGAAAGATGTTATGGCAGCACGATTCTT-CA
* * *
82630128 AGTAAGACCAT-AGTTGAAAGATGCTATGGCATCACGA
1 AGTAAGACCATGA-CTGAAAGATGTTATGGCAGCACGA
82630165 ATCAAACGAA
Statistics
Matches: 99, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
44 2 0.02
45 96 0.97
46 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27
Consensus pattern (44 bp):
AGTAAGACCATGACTGAAAGATGTTATGGCAGCACGATTCTTCA
Found at i:82630201 original size:45 final size:45
Alignment explanation
Indices: 82630130--82630286 Score: 133
Period size: 45 Copynumber: 3.5 Consensus size: 45
82630120 TTCTTCCAAG
* *** *
82630130 TAAGACCATAGTTGAAAGATGCTATGGCATCACGAATC-AAACGAA
1 TAAGACCATGGTTGAAAGACAATATGGCATCACGAA-CAAAAAGAA
* *
82630175 TAAGACCATGGTTGAAAGACATTATGGCAACAC-AACAAAAAGTACA
1 TAAGACCATGGTTGAAAGACAATATGGCATCACGAACAAAAAG-A-A
* * * *
82630221 TAAAACCATGGTTGAAAGACAATATGACATCAAG-ACGAGAATA-AA
1 TAAGACCATGGTTGAAAGACAATATGGCATCACGAAC-A-AAAAGAA
*
82630266 TAAGATCATGGTTGAAAGACA
1 TAAGACCATGGTTGAAAGACA
82630287 CCATGGCACA
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 6 0.07
45 49 0.53
46 32 0.35
47 1 0.01
48 3 0.03
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (45 bp):
TAAGACCATGGTTGAAAGACAATATGGCATCACGAACAAAAAGAA
Found at i:82642203 original size:49 final size:49
Alignment explanation
Indices: 82642130--82642317 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
82642120 TAGCCGAAGC
* * * *
82642130 TATCTGCTACGCATAGTAGCCTGCACTTGGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
* * * * *
82642179 AATCTGGTACACATAGCAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGA-C-CAAT
* ** *
82642230 TTTGGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
* *
82642279 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
82642318 CTTGACCTCA
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
49 74 0.64
50 2 0.02
51 39 0.34
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
Found at i:82642310 original size:100 final size:100
Alignment explanation
Indices: 82642137--82642318 Score: 310
Period size: 100 Copynumber: 1.8 Consensus size: 100
82642127 AGCTATCTGC
* * *
82642137 TACGCATAGTAGCCTGCACTTGGTACTACACATGCGACCAATAATCTGGTACACATAGCAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGGTACACATAGCAGCCTG
82642202 CACTTAGTACTACACACGTGATCACAGTTTTGGGG
66 CACTTAGTACTACACACGTGATCACAGTTTTGGGG
* * *
82642237 TACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCAATTATCCGGTACACGTAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGGTACACATAGCAGCCTG
82642302 CACTTAGTACTACACAC
66 CACTTAGTACTACACAC
82642319 TTGACCTCAC
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCGGTACACATAGCAGCCTG
CACTTAGTACTACACACGTGATCACAGTTTTGGGG
Found at i:82661091 original size:53 final size:48
Alignment explanation
Indices: 82660964--82661123 Score: 171
Period size: 47 Copynumber: 3.2 Consensus size: 48
82660954 ATACACGGAT
* * * *
82660964 CACATATCACA-CTGATGCCATATCCCAAATATGGTCTTATACAGTAG
1 CACATATCACATCCGATGCCATATCCCAGATATGGTCTTATACGGAAG
82661011 CACATATCACA-CCGATGCCATATCCCAGATATGGTCTTATACGGAAG
1 CACATATCACATCCGATGCCATATCCCAGATATGGTCTTATACGGAAG
* * * * *
82661058 CACATAATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTTTATGGAAAT
1 CACAT-ATCACA----TCCGATGCCATATCCCAGATATGGTCTTATACGG-AAG
82661112 CACATATCACAT
1 CACATATCACAT
82661124 GTTGCCATGG
Statistics
Matches: 97, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
47 48 0.49
48 6 0.06
49 1 0.01
53 35 0.36
54 7 0.07
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (48 bp):
CACATATCACATCCGATGCCATATCCCAGATATGGTCTTATACGGAAG
Found at i:82666952 original size:40 final size:40
Alignment explanation
Indices: 82666897--82667155 Score: 446
Period size: 40 Copynumber: 6.5 Consensus size: 40
82666887 GAATACATCT
82666897 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
82666937 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
*
82666977 GGGCTAAGACCCGAAGGCATTTGTCCAAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
*
82667017 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
*
82667057 GGGCTAAGACCCGAAGGCAGTTGTGCAAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
* * * *
82667097 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
*
82667137 GGGTTAAGACCCGAAGGCA
1 GGGCTAAGACCCGAAGGCA
82667156 ATTGAGCTTG
Statistics
Matches: 209, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 209 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCC
Found at i:82671299 original size:12 final size:12
Alignment explanation
Indices: 82671282--82671311 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
82671272 CCTCACATGC
82671282 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
82671294 CCGTGTTCTAGG
1 CCGTGTGCTAGG
82671306 CCGTGT
1 CCGTGT
82671312 AACTACTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.27, G:0.37, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:82681392 original size:33 final size:33
Alignment explanation
Indices: 82681350--82681419 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
82681340 GCACTGTACT
*
82681350 GATACTGAATAGGGCTTTGGCCTAGACTATACG
1 GATACTGAATAGGGCTTTGGCCCAGACTATACG
* * *
82681383 GATACTGAATAGTGCTTTGGCCCAGACTGTACT
1 GATACTGAATAGGGCTTTGGCCCAGACTATACG
82681416 GATA
1 GATA
82681420 GTGTGTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (33 bp):
GATACTGAATAGGGCTTTGGCCCAGACTATACG
Found at i:82684046 original size:40 final size:40
Alignment explanation
Indices: 82683973--82684273 Score: 471
Period size: 40 Copynumber: 7.5 Consensus size: 40
82683963 ACCCAAGTAT
* *
82683973 CTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
82684012 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
82684052 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
82684092 CTTCGGGTCCTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
82684132 CTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
82684172 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* ** *
82684212 ATTCGGGACTTAGCCCAAATATAGTCACTAGCACAAAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
82684252 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
82684274 CATCCGAATA
Statistics
Matches: 242, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 11 0.05
40 230 0.95
41 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:82691759 original size:31 final size:31
Alignment explanation
Indices: 82691716--82691794 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
82691706 TTTAACGGTT
*
82691716 ACTGGGCTGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTCCATAAATCATATC
*
82691747 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTCCATAAATCATATC
*
82691778 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
82691795 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTCCATAAATCATATC
Found at i:82692084 original size:26 final size:26
Alignment explanation
Indices: 82692000--82692161 Score: 251
Period size: 26 Copynumber: 6.3 Consensus size: 26
82691990 CTGGAGGCCT
82692000 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
82692024 AGCCCTTTTCGGTAAACTAGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
82692049 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
82692075 AGCCCTTTTCAGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82692101 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82692127 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82692153 AGCCCTTTT
1 AGCCCTTTT
82692162 GCACTTCCTC
Statistics
Matches: 127, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 31 0.24
26 86 0.68
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:82693040 original size:27 final size:27
Alignment explanation
Indices: 82692965--82693052 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
82692955 TATTCGTCAT
* * * *
82692965 TTTACCATAC-AGGGGTATTACAGTCAC
1 TTTACCTTACAAGGGCT-TTACGGTCTC
* *
82692992 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCTTACAAGGGCTTTACGGTCTC
*
82693019 TTTACCTTACAAGGGCTTTACGGTCTT
1 TTTACCTTACAAGGGCTTTACGGTCTC
82693046 TTTACCT
1 TTTACCT
82693053 AATAGGGGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 48 0.92
28 4 0.08
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TTTACCTTACAAGGGCTTTACGGTCTC
Found at i:82693135 original size:27 final size:27
Alignment explanation
Indices: 82693082--82693466 Score: 198
Period size: 27 Copynumber: 14.3 Consensus size: 27
82693072 TTTCATCCTA
* * * * * *
82693082 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
82693109 CAAGGGTATTTCAGTAATTTTGTAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
82693135 CTAATGGTATTTTCA-TAATTTTTAGAAAGT
1 C-AAGGGTATTTT-AGTAA-TTTTATAAA-T
* *
82693165 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
82693192 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** * * *
82693219 TGAGGGTA-TTTCGATAATTTCACAAA-
1 CAAGGGTATTTTAG-TAATTTTATAAAT
* *
82693245 CTAGTGGTATTTT-GTTAATTTTACAAA-
1 CAAG-GGTATTTTAG-TAATTTTATAAAT
* * *
82693272 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
** * *
82693300 TGAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
82693327 CAAGGGTATTTTAGCAATTTTA-AAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
82693353 -TA-GGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAT
* * * *
82693378 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
82693405 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *** * *
82693432 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
82693459 CAATGGTA
1 CAAGGGTA
82693467 AAACAGTAAT
Statistics
Matches: 282, Mismatches: 57, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
24 16 0.06
25 3 0.01
26 13 0.05
27 217 0.77
28 19 0.07
29 12 0.04
30 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:82693288 original size:81 final size:79
Alignment explanation
Indices: 82693193--82693425 Score: 267
Period size: 81 Copynumber: 2.9 Consensus size: 79
82693183 TTTGTAAATC
*
82693193 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAA-CTAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT-GATAATTTCACAAACCAAG-GGTATTT
*
82693257 T-GTTAATTTTACAAACT
64 TAG-CAATTTTA-AAACT
* *
82693274 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTGA-TAATTTCACAAACCAAGGGTATTTT
*
82693339 AGCAATTTTAAAATT
65 AGCAATTTTAAAACT
** * * ***
82693354 A--GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA-TTTGATAATTTCACAAACCAAGGGTATTTT
*
82693417 AGTAATTTT
65 AGCAATTTT
82693426 GTAAATCGAG
Statistics
Matches: 135, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
78 59 0.44
79 3 0.02
80 6 0.04
81 63 0.47
82 4 0.03
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (79 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTGATAATTTCACAAACCAAGGGTATTTTA
GCAATTTTAAAACT
Found at i:82693338 original size:54 final size:53
Alignment explanation
Indices: 82693084--82693425 Score: 237
Period size: 54 Copynumber: 6.4 Consensus size: 53
82693074 TCATCCTACA
* * * * ** *
82693084 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACT
1 AGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACT
* * * * *
82693137 AATGGTATTTTCA-TAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGTAAA-T
1 -AGGGTATTTT-AGTAA-TTTTACAAA-CCAAGGGTATTT-TGGTAATTTTATAAACT
* *** * * * *
82693192 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACT
1 -A-GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACT
* * * *
82693247 AGTGGTATTTT-GTTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATT
1 AG-GGTATTTTAG-TAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACT
* * *
82693301 GAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTA-AAATT
1 -AGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACT
* ** * * * *
82693354 A-GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAA-CT
82693407 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTAGTAATTTT
82693426 GTAAATCGAG
Statistics
Matches: 230, Mismatches: 43, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
51 37 0.16
52 4 0.02
53 8 0.03
54 127 0.55
55 20 0.09
56 34 0.15
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACT
Found at i:82693395 original size:78 final size:80
Alignment explanation
Indices: 82693195--82693425 Score: 299
Period size: 78 Copynumber: 2.9 Consensus size: 80
82693185 TGTAAATCAG
* * * *
82693195 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAA-CTAGTGGTATTTT-
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAG-GGTATTTTA
82693258 GTTAATTTTACAAACTA
65 G-TAATTTTACAAACTA
*
82693275 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTA
1 -GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
* *
82693340 GCAATTTTA-AAATTA
65 GTAATTTTACAAACTA
** * **
82693355 -GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG
82693419 TAATTTT
66 TAATTTT
82693426 GTAAATCGAG
Statistics
Matches: 134, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 64 0.48
80 5 0.04
81 61 0.46
82 4 0.03
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG
TAATTTTACAAACTA
Found at i:82693467 original size:27 final size:27
Alignment explanation
Indices: 82693417--82693547 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
82693407 AGGGTATTTT
* *
82693417 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
82693444 AGTAATTCTGTAAATCAATGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
82693471 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
82693498 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
82693525 GGTAATTCTATAAATTGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
82693548 CTTTGGTAAT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:82693558 original size:54 final size:54
Alignment explanation
Indices: 82693390--82693547 Score: 190
Period size: 54 Copynumber: 2.9 Consensus size: 54
82693380 AGGGTATTTT
* * **** * * * *
82693390 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAC
* *
82693444 AGTAATTCTGTAAATCAATGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAC
* *
82693498 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTA
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTA
82693548 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.32
Consensus pattern (54 bp):
GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAAC
Found at i:82693584 original size:81 final size:81
Alignment explanation
Indices: 82693407--82693585 Score: 178
Period size: 81 Copynumber: 2.2 Consensus size: 81
82693397 TTGTAAACCA
* * * * *
82693407 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAATGGTAAAACA
1 AGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
*
82693472 GTAATTCTATAAATTG
66 GTAATTCTACAAATTG
*** * * ** *****
82693488 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTACTTTG
1 AGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
* *
82693553 GTAATTTTACAATTTG
66 GTAATTCTACAAATTG
82693569 AGGGTATTTCAGTAATT
1 AGGGTATTTCAGTAATT
82693586 TGGTAAAGTA
Statistics
Matches: 74, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.35
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
GTAATTCTACAAATTG
Found at i:82695784 original size:13 final size:13
Alignment explanation
Indices: 82695766--82695791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82695756 TTTGGGTGTA
82695766 AAGGAAAGCTAAG
1 AAGGAAAGCTAAG
82695779 AAGGAAAGCTAAG
1 AAGGAAAGCTAAG
82695792 CCCAAGGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.31, T:0.08
Consensus pattern (13 bp):
AAGGAAAGCTAAG
Found at i:82699009 original size:40 final size:40
Alignment explanation
Indices: 82698935--82699156 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
82698925 AACCCAAGTA
* *
82698935 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
82698974 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
82699014 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
82699054 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
82699094 CCTTCGGGACTGAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
82699134 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82699157 CATCCGAATA
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.07
40 157 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:82701406 original size:14 final size:14
Alignment explanation
Indices: 82701387--82701413 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82701377 CATAATCGAT
82701387 AAAATTTTCATATC
1 AAAATTTTCATATC
82701401 AAAATTTTCATAT
1 AAAATTTTCATAT
82701414 GGCATTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATTTTCATATC
Found at i:82709403 original size:46 final size:46
Alignment explanation
Indices: 82709336--82709513 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
82709326 TGTAACCCGC
*
82709336 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
82709382 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
82709428 ACATCTCTTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
82709475 CCATAAGTGAAATCGGACTCAACTGAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
82709514 CCCAAACATC
Statistics
Matches: 107, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:82709455 original size:93 final size:93
Alignment explanation
Indices: 82709343--82709515 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
82709333 CGCCCATAAG
*** *
82709343 TGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
82709408 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
82709436 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTGA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
*
82709501 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
82709516 CAAACATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAAATCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:82712004 original size:15 final size:15
Alignment explanation
Indices: 82711986--82712022 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
82711976 GTTTGTGGTA
82711986 TAAGAGTTTTGAG-TT
1 TAAG-GTTTTGAGATT
82712001 TAAGGTTTTGAGATT
1 TAAGGTTTTGAGATT
82712016 TAAGGTT
1 TAAGGTT
82712023 CAAAGTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (15 bp):
TAAGGTTTTGAGATT
Found at i:82712008 original size:7 final size:7
Alignment explanation
Indices: 82711998--82712064 Score: 55
Period size: 7 Copynumber: 9.6 Consensus size: 7
82711988 AGAGTTTTGA
82711998 GTTTAAG
1 GTTTAAG
*
82712005 GTTTTGAG
1 G-TTTAAG
*
82712013 ATTTAAG
1 GTTTAAG
* *
82712020 GTTCAAA
1 GTTTAAG
*
82712027 GTTTATG
1 GTTTAAG
82712034 GTTT-AG
1 GTTTAAG
*
82712040 GGTTAAG
1 GTTTAAG
*
82712047 GTTTAGG
1 GTTTAAG
82712054 GTTTAAG
1 GTTTAAG
82712061 GTTT
1 GTTT
82712065 TATGTCTATG
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
6 4 0.09
7 35 0.80
8 5 0.11
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (7 bp):
GTTTAAG
Found at i:82712051 original size:13 final size:14
Alignment explanation
Indices: 82711936--82712064 Score: 84
Period size: 14 Copynumber: 9.1 Consensus size: 14
82711926 CTAATTAATC
82711936 TAGGGTTTAAGGTT
1 TAGGGTTTAAGGTT
*
82711950 TAGAG-TTAAGGGTT
1 TAGGGTTTAA-GGTT
**
82711964 TAGGGGTTTGTGGTT
1 TA-GGGTTTAAGGTT
*
82711979 T-GTGGTATAAGAGTT
1 TAG-GGTTTAAG-GTT
* *
82711994 TTGAGTTTAAGGTT
1 TAGGGTTTAAGGTT
* *
82712008 TTGAGATTTAAGGTT
1 TAG-GGTTTAAGGTT
* ** *
82712023 CAAAGTTTATGGTT
1 TAGGGTTTAAGGTT
82712037 TAGGG-TTAAGGTT
1 TAGGGTTTAAGGTT
82712050 TAGGGTTTAAGGTT
1 TAGGGTTTAAGGTT
82712064 T
1 T
82712065 TATGTCTATG
Statistics
Matches: 86, Mismatches: 21, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
13 17 0.20
14 40 0.47
15 26 0.30
16 3 0.03
ACGTcount: A:0.22, C:0.01, G:0.33, T:0.43
Consensus pattern (14 bp):
TAGGGTTTAAGGTT
Found at i:82712099 original size:7 final size:7
Alignment explanation
Indices: 82712027--82712103 Score: 50
Period size: 7 Copynumber: 11.1 Consensus size: 7
82712017 AAGGTTCAAA
*
82712027 GTTTATG
1 GTTTAGG
82712034 GTTTAGG
1 GTTTAGG
*
82712041 G-TTAAG
1 GTTTAGG
82712047 GTTTAGG
1 GTTTAGG
82712054 GTTTAAGG
1 GTTT-AGG
* *
82712062 TTTTA-T
1 GTTTAGG
* *
82712068 GTCTATG
1 GTTTAGG
*
82712075 GCTTAGG
1 GTTTAGG
* *
82712082 TTTTGGG
1 GTTTAGG
82712089 GTTTAGG
1 GTTTAGG
82712096 GTTTAGG
1 GTTTAGG
82712103 G
1 G
82712104 AAGATCAAAT
Statistics
Matches: 51, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
6 8 0.16
7 37 0.73
8 6 0.12
ACGTcount: A:0.16, C:0.03, G:0.36, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:82713604 original size:10 final size:10
Alignment explanation
Indices: 82713585--82713619 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
82713575 GAAAAATGGA
*
82713585 TATGGGTGTT
1 TATGGTTGTT
82713595 TATGGTTGTT
1 TATGGTTGTT
82713605 TATGGTTGTT
1 TATGGTTGTT
*
82713615 CATGG
1 TATGG
82713620 CTATTCACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.11, C:0.03, G:0.34, T:0.51
Consensus pattern (10 bp):
TATGGTTGTT
Found at i:82715042 original size:42 final size:43
Alignment explanation
Indices: 82714949--82715051 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
82714939 CAATGCTGAC
* * ** * *
82714949 GTCCCAGACGTGGTCTTACATGTAATTGAATGTCGATGCCTAT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCGAT
*
82714992 GTCCCAGACAAGGTCTTACATGAAATCAAATAT-GATGCCGAT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCGAT
82715034 GTCCCAGACATGGTCTTA
1 GTCCCAGACATGGTCTTA
82715052 TACGTAAATC
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCGAT
Found at i:82716841 original size:13 final size:14
Alignment explanation
Indices: 82716825--82716853 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
82716815 TTTTAAATAT
82716825 TTATAATG-TTTAA
1 TTATAATGATTTAA
82716838 TTATAATGATTTAA
1 TTATAATGATTTAA
82716852 TT
1 TT
82716854 CATCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
TTATAATGATTTAA
Found at i:82717661 original size:43 final size:43
Alignment explanation
Indices: 82717614--82717832 Score: 240
Period size: 43 Copynumber: 5.1 Consensus size: 43
82717604 CTACCAACGC
* * *
82717614 TCACGTTTTTTAGCGGCATTTGTGTGAAAAGAGCTGCTAAAGG
1 TCACGTTCTTTAGCGGCGTTTGTGTGAAAGGAGCTGCTAAAGG
* ** ** **
82717657 TCACGTTCTTCAGCAACGTTTGTGTGAAAGGTTCCACTAAAGG
1 TCACGTTCTTTAGCGGCGTTTGTGTGAAAGGAGCTGCTAAAGG
** * *
82717700 TCACGTTCTTTAGCGGCGTTTGTGTGAAAGGCTCCGCTAAAGA
1 TCACGTTCTTTAGCGGCGTTTGTGTGAAAGGAGCTGCTAAAGG
* * * * * *
82717743 TCACATTCTTTAGTGGCTTTTTTGTGAAAGGCGCTGCTCAAGG
1 TCACGTTCTTTAGCGGCGTTTGTGTGAAAGGAGCTGCTAAAGG
* *
82717786 TCACGTTCTTTAGTGGCGTTTGTGTGAAAGGAGCCGCTAAAGG
1 TCACGTTCTTTAGCGGCGTTTGTGTGAAAGGAGCTGCTAAAGG
82717829 TCAC
1 TCAC
82717833 TTTTTTAACA
Statistics
Matches: 146, Mismatches: 30, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (43 bp):
TCACGTTCTTTAGCGGCGTTTGTGTGAAAGGAGCTGCTAAAGG
Found at i:82731897 original size:17 final size:17
Alignment explanation
Indices: 82731872--82731913 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
82731862 GTGTGATAGA
*
82731872 ATCTCCAACGATCTACG
1 ATCTACAACGATCTACG
* *
82731889 ATCTACAACGATTTATG
1 ATCTACAACGATCTACG
82731906 ATCTACAA
1 ATCTACAA
82731914 TCATAGCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (17 bp):
ATCTACAACGATCTACG
Found at i:82732438 original size:45 final size:45
Alignment explanation
Indices: 82732374--82732460 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
82732364 CCAAAACATG
82732374 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
* *
82732419 TGTCACATATATCATGAACTCAGACCACAACTCAATGGGTTC
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTC
82732461 AGATTACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
Found at i:82733598 original size:13 final size:13
Alignment explanation
Indices: 82733558--82733634 Score: 84
Period size: 13 Copynumber: 5.9 Consensus size: 13
82733548 ACACTTAAAT
*
82733558 TTTTCCAAAGCAC
1 TTTTCAAAAGCAC
* **
82733571 TTCTCAAAAATAC
1 TTTTCAAAAGCAC
*
82733584 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
*
82733597 TTTTCCACAA-CAC
1 TTTT-CAAAAGCAC
82733610 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
82733623 TTTTCAAAAGCA
1 TTTTCAAAAGCA
82733635 ATGAAGAACT
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
12 4 0.08
13 45 0.85
14 4 0.08
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:82733611 original size:39 final size:39
Alignment explanation
Indices: 82733558--82733634 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
82733548 ACACTTAAAT
*
82733558 TTTTCCAAAGCACTTCTCAAAAATACTTCTCAAAAGCAC
1 TTTTCCAAAGCACTTCTCAAAAACACTTCTCAAAAGCAC
* * *
82733597 TTTTCCACAA-CACTTTTCAAAAGCACTTTTCAAAAGCA
1 TTTTCCA-AAGCACTTCTCAAAAACACTTCTCAAAAGCA
82733635 ATGAAGAACT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 31 0.94
40 2 0.06
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (39 bp):
TTTTCCAAAGCACTTCTCAAAAACACTTCTCAAAAGCAC
Found at i:82736105 original size:40 final size:40
Alignment explanation
Indices: 82736060--82736251 Score: 244
Period size: 40 Copynumber: 4.8 Consensus size: 40
82736050 ATAACCACAA
* * *
82736060 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
*
82736100 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* * *
82736140 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* *
82736180 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* * *
82736220 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
82736252 CATTCAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
Found at i:82742020 original size:26 final size:26
Alignment explanation
Indices: 82741974--82742026 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
82741964 TCAGACATGC
*
82741974 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
82742000 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
82742026 A
1 A
82742027 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:82746173 original size:54 final size:53
Alignment explanation
Indices: 82746084--82746239 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 53
82746074 TGGCAACATT
*
82746084 TGATATGTGATTTCCGTATAAGACCATAGCCGGGCTATGGCATCGGTGTGATG
1 TGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATG
* * *
82746137 TGATCATGTGATTTCCATATAAGACCATAGCTGGGCTATGGCATCGGAGAGATG
1 TGAT-ATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATG
* * * ** *
82746191 TGATTATGTG-CTTCTGTATAATACCATATTTGGGATATGGCATCGGTGT
1 TGA-TATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
82746240 CATATGTGCT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 34 0.39
54 53 0.60
55 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (53 bp):
TGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATG
Found at i:82746234 original size:53 final size:51
Alignment explanation
Indices: 82746099--82746277 Score: 168
Period size: 54 Copynumber: 3.5 Consensus size: 51
82746089 TGTGATTTCC
* * * * * *
82746099 GTATAAGACCATAGCCGGGCTATGGCATCGGTGTGATGTGATCATGTGATTTCC
1 GTATAAGACCATATCTGGGATATGGCATCGG-G-GATGTGATTATGTG-CTTCT
* * *
82746153 ATATAAGACCATAGCTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTTCT
1 GTATAAGACCATATCTGGGATATGGCATCGG-G-GATGTGATTATGTGCTTCT
* * * *
82746206 GTATAATACCATATTTGGGATATGGCATC--GG-TGTCA-TATGTGCTACT
1 GTATAAGACCATATCTGGGATATGGCATCGGGGATGTGATTATGTGCTTCT
82746253 GTATAAGACCATATCTGGGATATGG
1 GTATAAGACCATATCTGGGATATGG
82746278 TATCAGTGTG
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
47 33 0.30
48 4 0.04
49 1 0.01
50 1 0.01
53 27 0.25
54 43 0.39
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
GTATAAGACCATATCTGGGATATGGCATCGGGGATGTGATTATGTGCTTCT
Found at i:82746294 original size:47 final size:47
Alignment explanation
Indices: 82746154--82746286 Score: 140
Period size: 47 Copynumber: 2.7 Consensus size: 47
82746144 GTGATTTCCA
* * * *
82746154 TATAAGACCATAGCTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTTCTG
1 TATAAGACCATATCTGGGATATGGCATC----AG-TGTCA-TATGTGCTACTG
* * *
82746207 TATAATACCATATTTGGGATATGGCATCGGTGTCATATGTGCTACTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGTCATATGTGCTACTG
*
82746254 TATAAGACCATATCTGGGATATGGTATCAGTGT
1 TATAAGACCATATCTGGGATATGGCATCAGTGT
82746287 GGTATGTGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
47 40 0.58
48 4 0.06
49 1 0.01
53 24 0.35
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (47 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGTCATATGTGCTACTG
Found at i:82749101 original size:20 final size:20
Alignment explanation
Indices: 82749069--82749117 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
82749059 TGTGGGCTCA
* *
82749069 CACGCCAGTATATTGTAGGG
1 CACGCCCGTATATCGTAGGG
*
82749089 CATGCCCGTATATCGTAGGG
1 CACGCCCGTATATCGTAGGG
82749109 CACGCCCGT
1 CACGCCCGT
82749118 GCCCTCACCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (20 bp):
CACGCCCGTATATCGTAGGG
Found at i:82757827 original size:40 final size:40
Alignment explanation
Indices: 82757783--82757858 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
82757773 ACTATGTTTG
* ** * *
82757783 GCACTTAATGTGCGTTTTATAATAGCTTCGGCTATAAATA
1 GCACTCAATGTGCGAATTAGAATAGCTTCAGCTATAAATA
*
82757823 GCACTCAATGTGTGAATTAGAATAGCTTCAGCTATA
1 GCACTCAATGTGCGAATTAGAATAGCTTCAGCTATA
82757859 TGAGGCACTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (40 bp):
GCACTCAATGTGCGAATTAGAATAGCTTCAGCTATAAATA
Found at i:82766915 original size:26 final size:26
Alignment explanation
Indices: 82766885--82766935 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
82766875 CACCAATGAA
*
82766885 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
82766911 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
82766936 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:82766996 original size:103 final size:104
Alignment explanation
Indices: 82766648--82767013 Score: 609
Period size: 101 Copynumber: 3.6 Consensus size: 104
82766638 TAACCGTTAT
* *
82766648 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
82766713 AATCAGCACATAGCAACCCCCTTT---TTTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
82766749 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
82766814 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
82766853 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
82766916 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * **
82766955 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
82767014 TTTATATACA
Statistics
Matches: 252, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
101 87 0.35
102 70 0.28
103 52 0.21
104 43 0.17
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:82767373 original size:29 final size:29
Alignment explanation
Indices: 82767340--82767403 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
82767330 TAATCCACCA
82767340 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
82767369 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
82767399 CCCAA
1 CCCAA
82767404 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:82767377 original size:30 final size:30
Alignment explanation
Indices: 82767347--82767403 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
82767337 CCACCCAACT
82767347 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
82767376 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
82767404 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:82774480 original size:104 final size:105
Alignment explanation
Indices: 82774228--82774595 Score: 615
Period size: 102 Copynumber: 3.6 Consensus size: 105
82774218 TAACCGTTAT
* *
82774228 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
82774293 AATCAGCACATAGCAACCCCCTTTT--CATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
82774331 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
82774395 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
82774435 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
82774498 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* * * **
82774537 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
82774596 TTTATATACA
Statistics
Matches: 254, Mismatches: 7, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
102 102 0.40
103 80 0.31
104 72 0.28
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:82774497 original size:26 final size:26
Alignment explanation
Indices: 82774467--82774517 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
82774457 CACCAATGAA
*
82774467 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
82774493 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
82774518 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:82774955 original size:29 final size:29
Alignment explanation
Indices: 82774922--82774985 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
82774912 TAATCCACCA
82774922 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
82774951 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
82774981 CCCAA
1 CCCAA
82774986 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:82774959 original size:30 final size:30
Alignment explanation
Indices: 82774929--82774985 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
82774919 CCACCCAACT
82774929 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
82774958 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
82774986 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:82777479 original size:16 final size:17
Alignment explanation
Indices: 82777454--82777490 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
82777444 GTGAAACTGC
*
82777454 AAAGGCTGAAAAGCT-G
1 AAAGGATGAAAAGCTGG
82777470 AAAGGATGAAAAGCTGG
1 AAAGGATGAAAAGCTGG
82777487 AAAG
1 AAAG
82777491 TGGGTTGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.49, C:0.08, G:0.32, T:0.11
Consensus pattern (17 bp):
AAAGGATGAAAAGCTGG
Found at i:82777945 original size:25 final size:26
Alignment explanation
Indices: 82777888--82777985 Score: 135
Period size: 26 Copynumber: 3.7 Consensus size: 26
82777878 TCACCGAAAT
*
82777888 CCCTAATAGGGTAAAATGACTATAATA
1 CCCT-ATAGGGTAAAATGACTGTAATA
*
82777915 CACTATAGGGTAAAATGAC-GTAATA
1 CCCTATAGGGTAAAATGACTGTAATA
82777940 CCCTATAGGGTAAAATGACTGTAATA
1 CCCTATAGGGTAAAATGACTGTAATA
* *
82777966 CCCTTGTAAGGTAAAATGAC
1 CCC-TATAGGGTAAAATGAC
82777986 AATTTTGCTT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 23 0.36
26 24 0.38
27 17 0.27
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (26 bp):
CCCTATAGGGTAAAATGACTGTAATA
Found at i:82778050 original size:81 final size:81
Alignment explanation
Indices: 82777964--82778164 Score: 244
Period size: 81 Copynumber: 2.5 Consensus size: 81
82777954 ATGACTGTAA
* * **
82777964 TACCCTTGTAAGGTAAAATGACAATTTTGCTTTTATGTGGCAAAATGACAATTTTGCCCTTATAT
1 TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACAATTTTGCCCTTATAT
82778029 GTTAAAA-AGACAATTT
66 GTTAAAATAGA-AATTT
* * * ** * *
82778045 TACCCTTATGTGATAAAATGACGATTTTGCCCTTATGTGGCAAAATGACTGTTTTGTCCTTATGT
1 TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACAATTTTGCCCTTATAT
* *
82778110 GTTAAAATGGAGATTT
66 GTTAAAATAGAAATTT
* *
82778126 T-TCCTTATCTGGTAAAATGACAATTTTGCCCTTATGTGG
1 TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGG
82778165 TAGGATGACT
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 34 0.33
81 66 0.65
82 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.39
Consensus pattern (81 bp):
TACCCTTATATGGTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACAATTTTGCCCTTATAT
GTTAAAATAGAAATTT
Found at i:82778179 original size:27 final size:27
Alignment explanation
Indices: 82777975--82778166 Score: 208
Period size: 27 Copynumber: 7.1 Consensus size: 27
82777965 ACCCTTGTAA
**
82777975 GGTAAAATGACAATTTTGCTTTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* *
82778002 GGCAAAATGACAATTTTGCCCTTATAT
1 GGTAAAATGACAATTTTGCCCTTATGT
* * *
82778029 GTTAAAAAGACAATTTTACCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* *
82778056 GATAAAATGACGATTTTGCCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* ** *
82778083 GGCAAAATGACTGTTTTGTCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
* * * *
82778110 GTTAAAATGGA-GATTTT-TCCTTATCT
1 GGTAAAAT-GACAATTTTGCCCTTATGT
82778136 GGTAAAATGACAATTTTGCCCTTATGT
1 GGTAAAATGACAATTTTGCCCTTATGT
82778163 GGTA
1 GGTA
82778167 GGATGACTTT
Statistics
Matches: 135, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
25 2 0.01
26 20 0.15
27 111 0.82
28 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (27 bp):
GGTAAAATGACAATTTTGCCCTTATGT
Found at i:82781835 original size:18 final size:18
Alignment explanation
Indices: 82781808--82781844 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
82781798 GGTTCCTCCA
82781808 ACCTGCATTATAAGTATT
1 ACCTGCATTATAAGTATT
*
82781826 ACCTGTATTATAAGTATT
1 ACCTGCATTATAAGTATT
82781844 A
1 A
82781845 TTGTATGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (18 bp):
ACCTGCATTATAAGTATT
Found at i:82783208 original size:13 final size:13
Alignment explanation
Indices: 82783190--82783214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82783180 GTTGTTTATT
82783190 AAACTAATTAACG
1 AAACTAATTAACG
82783203 AAACTAATTAAC
1 AAACTAATTAAC
82783215 TAACTAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.04, T:0.24
Consensus pattern (13 bp):
AAACTAATTAACG
Found at i:82785704 original size:13 final size:12
Alignment explanation
Indices: 82785685--82785716 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
82785675 GGTTGTTTAT
82785685 TAACTAATTAAC
1 TAACTAATTAAC
82785697 TAAACTAATTAAC
1 T-AACTAATTAAC
82785710 TAACTAA
1 TAACTAA
82785717 ACTAAAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (12 bp):
TAACTAATTAAC
Found at i:82788613 original size:11 final size:11
Alignment explanation
Indices: 82788597--82788650 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 11
82788587 AAAGGAAAAT
*
82788597 AATAAAATTGA
1 AATAAAATAGA
82788608 AATAAAAATAGA
1 AAT-AAAATAGA
*
82788620 AATAAAAATAAA
1 AAT-AAAATAGA
*
82788632 AATAAAAATAAA
1 AAT-AAAATAGA
82788644 AATAAAA
1 AATAAAA
82788651 AGATAAGAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
11 7 0.17
12 33 0.82
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (11 bp):
AATAAAATAGA
Found at i:82788616 original size:6 final size:6
Alignment explanation
Indices: 82788607--82788651 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
82788597 AATAAAATTG
*
82788607 AAATAA AAATAG AAATAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
82788652 GATAAGAGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:82795397 original size:14 final size:15
Alignment explanation
Indices: 82795363--82795399 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
82795353 TATATTGACC
*
82795363 AACACACTATCCCTA
1 AACAAACTATCCCTA
82795378 AACAAACTATCCCT-
1 AACAAACTATCCCTA
82795392 AACAAACT
1 AACAAACT
82795400 TGTGACAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (15 bp):
AACAAACTATCCCTA
Found at i:82800464 original size:16 final size:16
Alignment explanation
Indices: 82800437--82800479 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
82800427 AGTAAACTGG
82800437 AAAAAGCC-AAAAGCC
1 AAAAAGCCGAAAAGCC
* *
82800452 AAAAAGCTGAAAAGTC
1 AAAAAGCCGAAAAGCC
82800468 AAAAAGCCGAAA
1 AAAAAGCCGAAA
82800480 GAACGACATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 7 0.29
16 17 0.71
ACGTcount: A:0.60, C:0.19, G:0.16, T:0.05
Consensus pattern (16 bp):
AAAAAGCCGAAAAGCC
Found at i:82801112 original size:26 final size:26
Alignment explanation
Indices: 82801081--82801152 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
82801071 CATATGCTGA
**
82801081 TACTGGCAGCTTTGCTGCGTTACTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
* *
82801107 TACTGGCAGCTTTCCTGCGACATTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
*
82801133 TACTTGCAGCTTTGCTGCGA
1 TACTGGCAGCTTTGCTGCGA
82801153 TATTGGTGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGACACTAT
Found at i:82808229 original size:16 final size:16
Alignment explanation
Indices: 82808202--82808244 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
82808192 AGTAAACTGG
82808202 AAAAAGCC-AAAAGCC
1 AAAAAGCCGAAAAGCC
* *
82808217 AAAAAGCTGAAAAGTC
1 AAAAAGCCGAAAAGCC
82808233 AAAAAGCCGAAA
1 AAAAAGCCGAAA
82808245 GAACGACATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 7 0.29
16 17 0.71
ACGTcount: A:0.60, C:0.19, G:0.16, T:0.05
Consensus pattern (16 bp):
AAAAAGCCGAAAAGCC
Found at i:82808877 original size:26 final size:26
Alignment explanation
Indices: 82808846--82808917 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
82808836 CATATGCTGA
**
82808846 TACTGGCAGCTTTGCTGCGTTACTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
* *
82808872 TACTGGCAGCTTTCCTGCGACATTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
*
82808898 TACTTGCAGCTTTGCTGCGA
1 TACTGGCAGCTTTGCTGCGA
82808918 TATTGGTGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGACACTAT
Found at i:82816611 original size:26 final size:26
Alignment explanation
Indices: 82816580--82816651 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
82816570 CATATGCTGA
**
82816580 TACTGGCAGCTTTGCTGCGTTACTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
* *
82816606 TACTGGCAGCTTTCCTGCGACATTAT
1 TACTGGCAGCTTTGCTGCGACACTAT
*
82816632 TACTTGCAGCTTTGCTGCGA
1 TACTGGCAGCTTTGCTGCGA
82816652 TATTGGTGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGACACTAT
Found at i:82824348 original size:26 final size:26
Alignment explanation
Indices: 82824307--82824379 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
82824297 TTTGCCATAT
*
82824307 ATACTGTTACTAGCAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTGCTGCG
* *
82824333 TTACTATTACTGGCAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTGCTGCG
*
82824359 ATATTATTACTAGCAGCTTTG
1 ATACTATTACTAGCAGCTTTG
82824380 TTGTGATATT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (26 bp):
ATACTATTACTAGCAGCTTTGCTGCG
Found at i:82824387 original size:26 final size:26
Alignment explanation
Indices: 82824313--82824389 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
82824303 ATATATACTG
* *
82824313 TTACTAGCAGCTTTGCTGCGTTACTA
1 TTACTAGCAGCTTTGCTGCGATATTA
*
82824339 TTACTGGCAGCTTTGCTGCGATATTA
1 TTACTAGCAGCTTTGCTGCGATATTA
* *
82824365 TTACTAGCAGCTTTGTTGTGATATT
1 TTACTAGCAGCTTTGCTGCGATATT
82824390 GGTGTGTTGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (26 bp):
TTACTAGCAGCTTTGCTGCGATATTA
Found at i:82840291 original size:43 final size:43
Alignment explanation
Indices: 82840243--82840409 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
82840233 GGTTATCGAG
* *
82840243 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
** *
82840286 TTGTGATTATGTGTAAGACCATGTCTGGGACATTAGCATCGTTA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TA
* * * * * * *
82840330 AT-CGATTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCG-A
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
* * * *
82840371 TATATGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 T-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
82840410 TGTACAAGCT
Statistics
Matches: 101, Mismatches: 20, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 90 0.89
44 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA
Found at i:82841964 original size:38 final size:40
Alignment explanation
Indices: 82841912--82842116 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
82841902 CGCTTGGACA
* * * * *
82841912 AAAAATGCCGCTATAGATTGAGCATTAGTGACGCTTT-T-
1 AAAAACGCCACTATAGATCGACCATTAGTGGCGCTTTATG
* *
82841950 AAAAACGCCACTATAGGTCGACCATTAGCT-GCGCATTT-TT
1 AAAAACGCCACTATAGATCGACCATTAG-TGGCGC-TTTATG
* * * *
82841990 AAAAA-GCACTGCTATAGGTCGAGCATTAGCGGCGCTTTATG
1 AAAAACGC-C-ACTATAGATCGACCATTAGTGGCGCTTTATG
** *
82842031 AAAAACATCTCTATAGATCGACCATTAGTGGCGCTTTATG
1 AAAAACGCCACTATAGATCGACCATTAGTGGCGCTTTATG
* * *
82842071 AAAAACGGCACTATAGGTCGACCATTAGAGGCGCTTTATG
1 AAAAACGCCACTATAGATCGACCATTAGTGGCGCTTTATG
82842111 AAAAAC
1 AAAAAC
82842117 ACCGAAAAAA
Statistics
Matches: 138, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 26 0.19
39 7 0.05
40 77 0.56
41 28 0.20
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (40 bp):
AAAAACGCCACTATAGATCGACCATTAGTGGCGCTTTATG
Found at i:82842057 original size:40 final size:39
Alignment explanation
Indices: 82841960--82842118 Score: 194
Period size: 40 Copynumber: 4.0 Consensus size: 39
82841950 AAAAACGCCA
* *
82841960 CTATAGGTCGACCATTAGCTGCGCATTT-TTAAAAAGCACT
1 CTATAGGTCGACCATTAGCGGCGC-TTTATGAAAAA-CACT
*
82842000 GCTATAGGTCGAGCATTAGCGGCGCTTTATGAAAAACATCT
1 -CTATAGGTCGACCATTAGCGGCGCTTTATGAAAAACA-CT
* * * *
82842041 CTATAGATCGACCATTAGTGGCGCTTTATGAAAAACGGCA
1 CTATAGGTCGACCATTAGCGGCGCTTTATGAAAAAC-ACT
*
82842081 CTATAGGTCGACCATTAGAGGCGCTTTATGAAAAACAC
1 CTATAGGTCGACCATTAGCGGCGCTTTATGAAAAACAC
82842119 CGAAAAAATT
Statistics
Matches: 104, Mismatches: 11, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 73 0.70
41 30 0.29
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (39 bp):
CTATAGGTCGACCATTAGCGGCGCTTTATGAAAAACACT
Found at i:82842609 original size:7 final size:7
Alignment explanation
Indices: 82842595--82842627 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
82842585 CTATGTTAAA
82842595 GTTTATG
1 GTTTATG
*
82842602 GATTATG
1 GTTTATG
82842609 GTTTATG
1 GTTTATG
82842616 GTTTATG
1 GTTTATG
82842623 GTTTA
1 GTTTA
82842628 AGGGTTGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (7 bp):
GTTTATG
Found at i:82843661 original size:13 final size:13
Alignment explanation
Indices: 82843643--82843675 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
82843633 ATCCCTTATT
82843643 AATTTTATCCCCA
1 AATTTTATCCCCA
*
82843656 AATTTTATCCCTA
1 AATTTTATCCCCA
82843669 AATTTTA
1 AATTTTA
82843676 CCCATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.45
Consensus pattern (13 bp):
AATTTTATCCCCA
Found at i:82843757 original size:14 final size:14
Alignment explanation
Indices: 82843738--82843767 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82843728 CTAATTTTTC
82843738 CCCCAAATCAAAAT
1 CCCCAAATCAAAAT
*
82843752 CCCCAAATCGAAAT
1 CCCCAAATCAAAAT
82843766 CC
1 CC
82843768 TTCCACCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.40, G:0.03, T:0.13
Consensus pattern (14 bp):
CCCCAAATCAAAAT
Found at i:82843854 original size:14 final size:14
Alignment explanation
Indices: 82843835--82843878 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
82843825 ATTTCCTGCT
82843835 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
*
82843849 TCTCTAAATCTCCT
1 TCTCTAAATCTCCA
*
82843863 TCTCTAAATTTCCA
1 TCTCTAAATCTCCA
82843877 TC
1 TC
82843879 CCTTTGATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.25, C:0.34, G:0.00, T:0.41
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:82849286 original size:15 final size:15
Alignment explanation
Indices: 82849266--82849334 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
82849256 GTATCTTGGG
82849266 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
82849281 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
82849296 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
82849311 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
82849326 TTTCTTTAT
1 TTTCTTTAT
82849335 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:82849335 original size:30 final size:30
Alignment explanation
Indices: 82849257--82849344 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
82849247 CATAATATCG
* * * *
82849257 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
82849287 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
82849317 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
82849345 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:82855862 original size:42 final size:42
Alignment explanation
Indices: 82855755--82855921 Score: 212
Period size: 42 Copynumber: 4.0 Consensus size: 42
82855745 TATCGGTGTT
* * * *
82855755 TTTGT-GGAAAGCGCCGCTAAAGATCATGTTATTTAGTGGTG
1 TTTGTGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG
*
82855796 TTTTTGGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG
1 TTTGT-GGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG
* ** *
82855839 TTTGTGGTG-AAGCGCTGCTAAAGGTCATGTTCTTTAGTAGCA
1 TTTGTGG-GAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG
*
82855881 TTTGTGGGAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGC
1 TTTGTGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
82855922 TTTTTTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
41 5 0.05
42 66 0.61
43 37 0.34
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.33
Consensus pattern (42 bp):
TTTGTGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCG
Found at i:82855905 original size:84 final size:84
Alignment explanation
Indices: 82855755--82855921 Score: 237
Period size: 84 Copynumber: 2.0 Consensus size: 84
82855745 TATCGGTGTT
* ** *
82855755 TTTGTGGAAAGCGCCGCTAAAGATCATGTTATTTAGTGGTGTTTTTGGGGAAAGCGCCGCTAAAG
1 TTTGTGGAAAGCGCCGCTAAAGATCATGTTATTTAGTAGCATTTGTGGGGAAAGCGCCGCTAAAG
82855820 GTCATGTTCTTTAGCGGCG
66 GTCATGTTCTTTAGCGGCG
* * * * *
82855839 TTTGTGGTGAAGCGCTGCTAAAGGTCATGTTCTTTAGTAGCATTTGT-GGGAAAGTGCCGCTAAA
1 TTTGTGG-AAAGCGCCGCTAAAGATCATGTTATTTAGTAGCATTTGTGGGGAAAGCGCCGCTAAA
82855903 GGTCATGTTCTTTAGCGGC
65 GGTCATGTTCTTTAGCGGC
82855922 TTTTTTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 42 0.58
85 31 0.42
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.33
Consensus pattern (84 bp):
TTTGTGGAAAGCGCCGCTAAAGATCATGTTATTTAGTAGCATTTGTGGGGAAAGCGCCGCTAAAG
GTCATGTTCTTTAGCGGCG
Found at i:82858525 original size:15 final size:15
Alignment explanation
Indices: 82858501--82858530 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82858491 GTTCTTGATC
82858501 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
82858516 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
82858531 ATATTTTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:82866509 original size:30 final size:29
Alignment explanation
Indices: 82866464--82866522 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
82866454 ATTTAATACG
*
82866464 AACTTTGGCAAAATTACATTTTTGCTCCTA
1 AACTTTGGCAAAATTACACTTTTGC-CCTA
* *
82866494 AACTTTTGCATAATTACACTTTTGCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCTA
82866523 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (29 bp):
AACTTTGGCAAAATTACACTTTTGCCCTA
Found at i:82870886 original size:36 final size:35
Alignment explanation
Indices: 82870844--82870915 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 35
82870834 TTCCCCTGAG
82870844 TCTGCACCACTAGCTTTTACATTCTGAAATTCTTCT
1 TCTGCACCACTAGCTTTTACATTCTGAAATT-TTCT
82870880 TCTGCACCACTAGCTTTTACATTCTGAAATTTTCT
1 TCTGCACCACTAGCTTTTACATTCTGAAATTTTCT
82870915 T
1 T
82870916 TCTAGCTCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 5 0.14
36 31 0.86
ACGTcount: A:0.22, C:0.26, G:0.08, T:0.43
Consensus pattern (35 bp):
TCTGCACCACTAGCTTTTACATTCTGAAATTTTCT
Found at i:82876540 original size:28 final size:28
Alignment explanation
Indices: 82876500--82876608 Score: 146
Period size: 28 Copynumber: 3.9 Consensus size: 28
82876490 TGGGAAGTAG
*
82876500 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
* *
82876528 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
* * *
82876556 TTGGGCCTAATGGGCTATGTGAATGAGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
*
82876584 TTGGGCCTAAATGGGCCAAATGAAT
1 TTGGGCCT-AATGGGCCATATGAAT
82876609 AATTGTGGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 58 0.82
29 13 0.18
ACGTcount: A:0.25, C:0.13, G:0.34, T:0.28
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGTGA
Found at i:82876935 original size:27 final size:27
Alignment explanation
Indices: 82876905--82877152 Score: 227
Period size: 27 Copynumber: 9.2 Consensus size: 27
82876895 TAATAAAGAG
*
82876905 AAATTACTGAAATACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
82876932 AAATTACCAAAATACCCCCGATTAGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
82876959 AAATTACT-AGAATACCCTC-AATTGTG
1 AAATTACTGA-AATACCCTCGATTTGTA
* *
82876985 AAATTAGTGAAATACCCTGGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
82877012 AAATTA-TCAAAATA-CCTCTGATTTGTG
1 AAATTACT-GAAATACCCTC-GATTTGTA
* * *
82877039 AAATTACTAAAACACTCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
82877066 AAATTACCGAAATAACCC-CAAATTGTG
1 AAATTACTGAAAT-ACCCTCGATTTGTA
* *
82877093 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
82877120 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
82877147 AGAATT
1 A-AATT
82877153 GTTGTTTCTT
Statistics
Matches: 177, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
26 28 0.16
27 138 0.78
28 11 0.06
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:82884738 original size:27 final size:27
Alignment explanation
Indices: 82884720--82884781 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
82884710 TATGTCGGTC
*
82884720 ATTTTACAGTACAAAGGTATTTCAATA
1 ATTTTACAGTACAAAGGTATTTCGATA
* *
82884747 ATTTTACATTACAAGGGTATTTCGATA
1 ATTTTACAGTACAAAGGTATTTCGATA
82884774 ATTTTACA
1 ATTTTACA
82884782 AATCGGGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.40
Consensus pattern (27 bp):
ATTTTACAGTACAAAGGTATTTCGATA
Found at i:82884791 original size:27 final size:27
Alignment explanation
Indices: 82884735--82884824 Score: 94
Period size: 27 Copynumber: 3.3 Consensus size: 27
82884725 ACAGTACAAA
* * *
82884735 GGTATTTCAATAATTTTAC-ATTACAAG
1 GGTATTTCGATAATTTTACAAAT-CGAG
*
82884762 GGTATTTCGATAATTTTACAAATCGGG
1 GGTATTTCGATAATTTTACAAATCGAG
*
82884789 GGTGTTTC-AGTAATTTTACAAATCGAG
1 GGTATTTCGA-TAATTTTACAAATCGAG
*
82884816 AGTATTTCG
1 GGTATTTCG
82884825 CAAGCACGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.02
27 49 0.94
28 2 0.04
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCGAG
Found at i:82889577 original size:16 final size:15
Alignment explanation
Indices: 82889556--82889586 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
82889546 TGCAATTTAG
82889556 TCCTAATTACTCAAAA
1 TCCTAATTACT-AAAA
82889572 TCCTAATTACTAAAA
1 TCCTAATTACTAAAA
82889587 CGATAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (15 bp):
TCCTAATTACTAAAA
Found at i:82898140 original size:19 final size:20
Alignment explanation
Indices: 82898113--82898150 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
82898103 GTGGTGAGCA
* *
82898113 AGGGTGAGA-AGATGGGAGG
1 AGGGAGAGAGAGAGGGGAGG
82898132 AGGGAGAGAGAGAGGGGAG
1 AGGGAGAGAGAGAGGGGAG
82898151 AAAAATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.34, C:0.00, G:0.61, T:0.05
Consensus pattern (20 bp):
AGGGAGAGAGAGAGGGGAGG
Found at i:82902759 original size:27 final size:27
Alignment explanation
Indices: 82902721--82902816 Score: 131
Period size: 27 Copynumber: 3.6 Consensus size: 27
82902711 CTCAATAGTG
*
82902721 TCGCACACTTAGTGCCACATGGTCAAT
1 TCGCACACTTAGTGCCACATAGTCAAT
* *
82902748 TCGCACACTTAGTG-CATCATATTCATT
1 TCGCACACTTAGTGCCA-CATAGTCAAT
* *
82902775 TCGCACACTTAGTGCAACATAGTCAAA
1 TCGCACACTTAGTGCCACATAGTCAAT
82902802 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
82902817 TGTACAATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
26 2 0.03
27 57 0.95
28 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCGCACACTTAGTGCCACATAGTCAAT
Found at i:82908149 original size:41 final size:41
Alignment explanation
Indices: 82908090--82908290 Score: 148
Period size: 41 Copynumber: 4.9 Consensus size: 41
82908080 CGATATCTTG
* *
82908090 CACACTAAGTGCCAATACATAGTCGAAGCTGT-TACAATCTCA
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATCT-CAATCTCA
* *
82908132 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAGTTTCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAATCTCA
** * * *
82908173 CACACTAAGTGCCATATTTAGCCAAAGCTAT-TACGGA--TCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCT-C-AATCTCA
* *
82908213 CACACTAAGTGCC--ACTATAGCCAAAGCTATCTCGAA--TCG
1 CACACTAAGTGCCATAC-ATAGCCGAAGCTATCTC-AATCTCA
* * * *
82908252 CACATTAAGTGCCATATATAGTCGAAGTTATCTCTAATC
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTC-AATC
82908291 ATCGTCAAAC
Statistics
Matches: 131, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
38 1 0.01
39 31 0.24
40 33 0.25
41 52 0.40
42 14 0.11
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (41 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCAATCTCA
Found at i:82908252 original size:39 final size:38
Alignment explanation
Indices: 82908132--82908269 Score: 152
Period size: 39 Copynumber: 3.5 Consensus size: 38
82908122 TACAATCTCA
* ** *
82908132 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAGTTTCA
1 CACACTAAGTGCCAT--ATAGCCAAAGCTATCTC-GAATCG
*
82908173 CACACTAAGTGCCATATTTAGCCAAAGCTAT-TACGGATCG
1 CACACTAAGTGCCATA--TAGCCAAAGCTATCT-CGAATCG
82908213 CACACTAAGTGCCACTATAGCCAAAGCTATCTCGAATCG
1 CACACTAAGTGCCA-TATAGCCAAAGCTATCTCGAATCG
*
82908252 CACATTAAGTGCCATATA
1 CACACTAAGTGCCATATA
82908270 TAGTCGAAGT
Statistics
Matches: 86, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
38 4 0.05
39 33 0.38
40 19 0.22
41 30 0.35
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (38 bp):
CACACTAAGTGCCATATAGCCAAAGCTATCTCGAATCG
Found at i:82908284 original size:40 final size:40
Alignment explanation
Indices: 82908132--82908290 Score: 169
Period size: 40 Copynumber: 4.0 Consensus size: 40
82908122 TACAATCTCA
* * ** *
82908132 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAGTTTCA
1 CACACTAAGTGCCATATATAGCCAAAGCTATCTC-GAATCG
* *
82908173 CACACTAAGTGCCATATTTAGCCAAAGCTAT-TACGGATCG
1 CACACTAAGTGCCATATATAGCCAAAGCTATCT-CGAATCG
*
82908213 CACACTAAGTGCCA-CTATAGCCAAAGCTATCTCGAATCG
1 CACACTAAGTGCCATATATAGCCAAAGCTATCTCGAATCG
* * * * *
82908252 CACATTAAGTGCCATATATAGTCGAAGTTATCTCTAATC
1 CACACTAAGTGCCATATATAGCCAAAGCTATCTCGAATC
82908291 ATCGTCAAAC
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.33
40 38 0.38
41 29 0.29
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCAAAGCTATCTCGAATCG
Found at i:82910235 original size:43 final size:42
Alignment explanation
Indices: 82910182--82910286 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 42
82910172 CCAACGTCCT
*
82910182 AGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTATCCC
1 AGACGTGGTCTTACATGTAATCAAATA-CAATGCCGA-TATCCC
* * *
82910225 AGACAG-GGTCTTACACGAAATCAAATACAATGCCGATGTCCC
1 AGAC-GTGGTCTTACATGTAATCAAATACAATGCCGATATCCC
82910267 AGACGTGGTCTTACATGTAA
1 AGACGTGGTCTTACATGTAA
82910287 ATCATAAGTC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 27 0.51
43 24 0.45
44 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
AGACGTGGTCTTACATGTAATCAAATACAATGCCGATATCCC
Found at i:82910289 original size:43 final size:43
Alignment explanation
Indices: 82910165--82910325 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 43
82910155 GAAAAGATAG
* * *
82910165 TACAATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAA
1 TACAATGCCGATGTCCCAGACGTGGTCTTACATGTAAATCAAA
* * *
82910207 TATCGATGCC-ACTATCCCAGACAG-GGTCTTACACG-AAATCAAA
1 TA-CAATGCCGA-TGTCCCAGAC-GTGGTCTTACATGTAAATCAAA
82910250 TACAATGCCGATGTCCCAGACGTGGTCTTACATGTAAATCATAA
1 TACAATGCCGATGTCCCAGACGTGGTCTTACATGTAAATCA-AA
* * * *
82910294 GT-CGATGCTGATGTACCAGACATGGTCTTACA
1 -TACAATGCCGATGTCCCAGACGTGGTCTTACA
82910326 CGAAAACACA
Statistics
Matches: 98, Mismatches: 12, Indels: 16
0.78 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 39 0.40
44 29 0.30
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (43 bp):
TACAATGCCGATGTCCCAGACGTGGTCTTACATGTAAATCAAA
Found at i:82910321 original size:86 final size:85
Alignment explanation
Indices: 82910165--82910330 Score: 219
Period size: 86 Copynumber: 1.9 Consensus size: 85
82910155 GAAAAGATAG
* *
82910165 TACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATACCAGACA
82910230 GGGTCTTACACGAAATCAAA
66 GGGTCTTACACGAAATCAAA
* * * * *
82910250 TACAATGCCGATGTCCCAGACGTGGTCTTACATGTAAATCATAA-GTCGATGCTGA-TGTACCAG
1 TACAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCGATGC-CACTATACCAG
*
82910313 ACATGGTCTTACACGAAA
63 ACAGGGTCTTACACGAAA
82910331 ACACATATCG
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 32 0.46
86 35 0.50
87 3 0.04
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (85 bp):
TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATACCAGACA
GGGTCTTACACGAAATCAAA
Found at i:82915632 original size:42 final size:43
Alignment explanation
Indices: 82915542--82915683 Score: 119
Period size: 42 Copynumber: 3.3 Consensus size: 43
82915532 GTCCAAGATG
* * *
82915542 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACACGAAATCAAATATCGACGCCACTGTCCCAGACA
* *
82915585 GGGTCTTACACGAAATCATATA-CGACGCCGA-TGTCCCAGACA
1 TGGTCTTACACGAAATCAAATATCGACGCC-ACTGTCCCAGACA
* * * * * * * *
82915627 TGGTCTTATACATAAATCTCAA-GTCGATGCCAATGTCCCAAACG
1 TGGTCTTACAC-GAAATC-AAATATCGACGCCACTGTCCCAGACA
82915671 TGGTCTTACACGA
1 TGGTCTTACACGA
82915684 TCTCACACCT
Statistics
Matches: 78, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
42 26 0.33
43 26 0.33
44 26 0.33
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
TGGTCTTACACGAAATCAAATATCGACGCCACTGTCCCAGACA
Found at i:82918819 original size:44 final size:42
Alignment explanation
Indices: 82918761--82918864 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 42
82918751 TTTTGATATC
* *
82918761 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCG-ATT
1 TGATTTCGTGTAAGACCACGTCTGGAACATCGGCATCGTATT
* *
82918802 TAAGATTTACGTTTAAGACCATGTCTGGAACATCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCACGTCTGGAACATCGGCATCGTATT
82918847 TGATTTTCGTGTAAGACC
1 TGA-TTTCGTGTAAGACC
82918865 CTATATGGGA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.02
43 17 0.32
44 31 0.58
45 4 0.08
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTGGAACATCGGCATCGTATT
Found at i:82923271 original size:29 final size:31
Alignment explanation
Indices: 82923234--82923291 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 31
82923224 TTTGAGTCTA
*
82923234 GGGTCAAAATCGTAATTTTG-TAAAGTTTAG
1 GGGTCAAAATCGTAATTTTGCCAAAGTTTAG
*
82923264 GGGT-AAAATTGTAATTTTGCCAAAGTTT
1 GGGTCAAAATCGTAATTTTGCCAAAGTTT
82923292 GAGTTAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (31 bp):
GGGTCAAAATCGTAATTTTGCCAAAGTTTAG
Found at i:82924100 original size:47 final size:47
Alignment explanation
Indices: 82924007--82924174 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
82923997 GCATTGTCCC
* *
82924007 TAAGATAAGGATACCGTGTAAGACCAT-TTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
82924053 TAATACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
82924100 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
82924147 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
82924175 CCAAGGCATG
Statistics
Matches: 115, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 24 0.21
47 91 0.79
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:82924211 original size:54 final size:54
Alignment explanation
Indices: 82924147--82924360 Score: 200
Period size: 54 Copynumber: 4.0 Consensus size: 54
82924137 TGGCATTTGG
* * *
82924147 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTA
* * * * * *
82924201 TAAGGTAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGATACTA
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAG-TTCTA
* * * * * *
82924256 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAATACATGGCATTGGTGAGTTC-A
1 TAAGG-TAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTA
* * * * *
82924309 TAAGGCAAGGATACCACGTAAGACAATGTCAAGACATGGCAA-TGGTAAGTTC
1 TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGATAAGTTC
82924361 AAAAAAGAAA
Statistics
Matches: 133, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 38 0.29
54 46 0.35
55 41 0.31
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
TAAGGTAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTA
Found at i:82924282 original size:55 final size:54
Alignment explanation
Indices: 82924153--82924349 Score: 227
Period size: 55 Copynumber: 3.6 Consensus size: 54
82924143 TTGGTAAGAT
* * * * *
82924153 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
82924207 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGATACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAG-TTCTATAAGGC
* * *
82924262 AAAGG-TCCCATGTAAGACCATGCCAATACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
82924315 AAGGATACCACGTAAGACAATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
82924350 ATGGTAAGTT
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 40 0.33
55 41 0.34
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:82924346 original size:53 final size:54
Alignment explanation
Indices: 82924153--82924360 Score: 222
Period size: 53 Copynumber: 3.9 Consensus size: 54
82924143 TTGGTAAGAT
* * * *
82924153 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
82924207 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGATACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAG-TTCTATAAGGC
* * * *
82924262 AAAGG-TCCCATGTAAGACCATGCCAATACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
82924315 AAGGATACCACGTAAGACAATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
82924361 AAAAAAGAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 40 0.31
55 41 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:82933981 original size:28 final size:28
Alignment explanation
Indices: 82933949--82934018 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
82933939 ATAGTAAGTC
82933949 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
82933977 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
82934005 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82934019 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:82952073 original size:9 final size:9
Alignment explanation
Indices: 82952059--82952092 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
82952049 ACGGTTGTTG
82952059 CAAATCCTA
1 CAAATCCTA
*
82952068 CAAATCCTG
1 CAAATCCTA
82952077 CAAATCCTA
1 CAAATCCTA
82952086 CAAATCC
1 CAAATCC
82952093 AAATCCTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.41, C:0.35, G:0.03, T:0.21
Consensus pattern (9 bp):
CAAATCCTA
Found at i:82952078 original size:18 final size:18
Alignment explanation
Indices: 82952057--82952092 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82952047 CTACGGTTGT
82952057 TGCAAATCCTACAAATCC
1 TGCAAATCCTACAAATCC
82952075 TGCAAATCCTACAAATCC
1 TGCAAATCCTACAAATCC
82952093 AAATCCTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.33, G:0.06, T:0.22
Consensus pattern (18 bp):
TGCAAATCCTACAAATCC
Found at i:82959742 original size:29 final size:28
Alignment explanation
Indices: 82959699--82959776 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82959689 TCATGAGATT
82959699 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82959729 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82959756 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
82959777 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82960053 original size:173 final size:174
Alignment explanation
Indices: 82959729--82960055 Score: 541
Period size: 173 Copynumber: 1.9 Consensus size: 174
82959719 AAATTGTACA
* * *
82959729 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
82959794 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTACGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACTTTACCGAGTCAA
82959859 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
82959903 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
82959968 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGA-GACTTTACCGAGTCA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGT-ACGACTTTACCGAGTCA
**
82960031 ATTTTGGACAGCGGGAAAGGTAAGT
130 ATTTTGGACAGCGAAAAAGGTAAGT
82960056 ACCTTGAGCT
Statistics
Matches: 142, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
173 77 0.54
174 65 0.46
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACTTTACCGAGTCAA
TTTTGGACAGCGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:82963517 original size:6 final size:6
Alignment explanation
Indices: 82963494--82963534 Score: 66
Period size: 6 Copynumber: 6.8 Consensus size: 6
82963484 GACCATTAAG
82963494 TTTATT TTT-TT ATTTATT TTTATT TTTATT TTTATT TTTAT
1 TTTATT TTTATT -TTTATT TTTATT TTTATT TTTATT TTTAT
82963535 GGTTATTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 2 0.06
6 29 0.88
7 2 0.06
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:82963540 original size:18 final size:18
Alignment explanation
Indices: 82963506--82963543 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
82963496 TATTTTTTTA
**
82963506 TTTATTTTTATTTTTATT
1 TTTATTTTTATGGTTATT
82963524 TTTATTTTTATGGTTATT
1 TTTATTTTTATGGTTATT
82963542 TT
1 TT
82963544 CTTAGACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTATTTTTATGGTTATT
Found at i:82970856 original size:17 final size:17
Alignment explanation
Indices: 82970831--82970871 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
82970821 GGCAATGATG
*
82970831 CATTACTAGATGCCACT
1 CATTGCTAGATGCCACT
82970848 CATTGCTAGATGCCACT
1 CATTGCTAGATGCCACT
82970865 CATTGCT
1 CATTGCT
82970872 TGTAATGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (17 bp):
CATTGCTAGATGCCACT
Found at i:82971360 original size:138 final size:138
Alignment explanation
Indices: 82971061--82971925 Score: 1380
Period size: 138 Copynumber: 6.3 Consensus size: 138
82971051 ATAGATAAAG
* *
82971061 TTAATATATGAATTTGATTTATACAAAATATTAATTGTATATATTTTATCGAAA-TTATTAATAT
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CCAAATTTATTAATAT
* * *
82971125 AAAAAATTATATTAATTAATTTCGGTCAAAA-ATAAAAGACATGGAAATTAATATTCTTTTGGAA
65 AAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAA
82971189 AGAATATAA
130 AGAATATAA
*
82971198 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * * *
82971263 AATAGTTATATTAATTAATTTTGGTCAAAATATAAAAAAAATGGAAATTAATATTCTTTTGGAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
82971328 GAATATAA
131 GAATATAA
*
82971336 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
*
82971401 AATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
82971466 GAATATAA
131 GAATATAA
* *
82971474 TTAATATATGAATTTGATTCATACGAAATATTAATTGTATATATTTTACTAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * *
82971539 AATAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTAGAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
82971604 GAATATAA
131 GAATATAA
* *
82971612 TTAATATATG-ATTT-TTTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * ** *
82971675 AACAGTTCTATTAATTAATTTCGGTCAAAATATAAGGGACATGAAAATTAATATTCTTTTGAAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
82971740 GAATATAA
131 GAATATAA
* **
82971748 TTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
* * *
82971813 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGAAAATTATTATTCTTTTGAAAA
66 AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
*
82971878 GAAAATAA
131 GAATATAA
* *
82971886 TTAATATAT-AGATTTTATTCATCCAAAATATTAATTGTAT
1 TTAATATATGA-ATTTGATTCATACAAAATATTAATTGTAT
82971926 TTATATAGAG
Statistics
Matches: 677, Mismatches: 46, Indels: 9
0.92 0.06 0.01
Matches are distributed among these distances:
136 123 0.18
137 93 0.14
138 461 0.68
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATATA
AATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
GAATATAA
Found at i:82971433 original size:67 final size:67
Alignment explanation
Indices: 82971221--82971433 Score: 157
Period size: 67 Copynumber: 3.1 Consensus size: 67
82971211 TTGATTCATA
**
82971221 CAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATAAATAGTTATATTAATTAATTTTG
1 CAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATAAATAGTTATATTAATTAATTTCA
82971286 GT
66 GT
* **** ***** * * * *
82971288 CAAAATATAAAAAAAATGGAAATTA--ATATTCTTTTGGAA-AGAATATAATTAATATATGAATT
1 CAAAATATTAATTGTATATTTTTTACCAAATT-TATT--AATATAA-ATAGTT-ATAT-T-AA-T
*
82971350 TGA-TTCA-T
58 TAATTTCAGT
82971358 ACAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATAAATAGTTATATTAATTAATTTC
1 -CAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATAAATAGTTATATTAATTAATTTC
82971423 AGT
65 AGT
82971426 CAAAATAT
1 CAAAATAT
82971434 AAAAGACATG
Statistics
Matches: 100, Mismatches: 32, Indels: 28
0.62 0.20 0.17
Matches are distributed among these distances:
65 4 0.04
66 6 0.06
67 32 0.32
68 9 0.09
69 8 0.08
70 9 0.09
71 22 0.22
72 6 0.06
73 4 0.04
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (67 bp):
CAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATAAATAGTTATATTAATTAATTTCA
GT
Found at i:82971779 original size:274 final size:275
Alignment explanation
Indices: 82971061--82971925 Score: 1384
Period size: 274 Copynumber: 3.1 Consensus size: 275
82971051 ATAGATAAAG
82971061 TTAATATATGAATTTGATTT-ATACAAAATATTAATTGTATATATTTTATCGAAA-TTATTAATA
1 TTAATATATGAATTTG-TTTCATACAAAATATTAATTGTATATATTTTATC-AAATTTATTAATA
* *
82971124 TAAAAAATTATATTAATTAATTTCGGTCAAAA-ATAAAAGACATGGAAATTAATATTCTTTTGGA
64 TAAAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
* *
82971188 AAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATT
129 AAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATT
* *
82971253 TATTAATATAAATAGTTATATTAATTAATTTTGGTCAAAATATAAAAAAAATGGAAATTAATATT
194 TATTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATT
82971318 CTTTTGGAAAGAATATAA
259 CTTTT-GAAAGAATATAA
* * *
82971336 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTATTAATATA
1 TTAATATATGAATTTGTTTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATATA
* *
82971401 AATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
66 AAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
*
82971466 GAATATAATTAATATATGAATTTGATTCATACGAAATATTAATTGTATATATTTTACTAAATTTA
131 GAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTA
* *
82971531 TTAATATAAATAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCT
196 TTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATTCT
82971596 TTTAGAAAGAATATAA
261 TTT-GAAAGAATATAA
82971612 TTAATATATG-ATTT-TTTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATATA
1 TTAATATATGAATTTGTTTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATATA
* * ** *
82971675 AACAGTTCTATTAATTAATTTCGGTCAAAATATAAGGGACATGAAAATTAATATTCTTTTGAAAA
66 AAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
* *
82971740 GAATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTA
131 GAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTA
* * *
82971805 TTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGAAAATTATTATTCT
196 TTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATTCT
*
82971870 TTTGAAAAGAAAATAA
261 TTTG-AAAGAATATAA
*
82971886 TTAATATAT-AGATTT-TATTCATCCAAAATATTAATTGTAT
1 TTAATATATGA-ATTTGT-TTCATACAAAATATTAATTGTAT
82971926 TTATATAGAG
Statistics
Matches: 550, Mismatches: 33, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
273 1 0.00
274 255 0.46
275 91 0.17
276 203 0.37
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (275 bp):
TTAATATATGAATTTGTTTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATATA
AAAAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAA
GAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTA
TTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAAACATGGAAATTAATATTCT
TTTGAAAGAATATAA
Found at i:82971826 original size:412 final size:413
Alignment explanation
Indices: 82971061--82971925 Score: 1423
Period size: 412 Copynumber: 2.1 Consensus size: 413
82971051 ATAGATAAAG
*
82971061 TTAATATATGAATTTGATTTATACAAAATATTAATTGTATATATTTTATCGAAATTATTAATATA
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAAATTATTAATATA
*
82971126 AAAAATTATATTAATTAATTTCGGTCAAAAATAAAAGACATGGAAATTAATATTCTTTTGGAAAG
66 AAAAATTATATTAATTAATTTCGGTCAAAAATAAAAGACATGGAAATTAATATTCTTTTAGAAAG
*
82971191 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACCAAATTTAT
131 AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAT
* * *
82971256 TAATATAAATAGTTATATTAATTAATTTTGGTCAAAATATAAAAAAAATGGAAATTAATATTCTT
196 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAAAAATGAAAATTAATATTCTT
* * *
82971321 TTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATTTTTTACC
261 TTGAAAAGAATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
82971386 AAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTA
326 AAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTA
* *
82971451 ATATTCTTTTGGAAAGAATATAA
391 ATATTCTTTTGAAAAGAAAATAA
* *
82971474 TTAATATATGAATTTGATTCATACGAAATATTAATTGTATATATTTTA-CTAAATTTATTAATAT
1 TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAAA-TTATTAATAT
*
82971538 AAATAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTAGAA
65 AAAAAATTATATTAATTAATTTCGGTCAAAA-ATAAAAGACATGGAAATTAATATTCTTTTAGAA
* *
82971603 AGAATATAATTAATATATG-ATTT-TTTCATACAAAATATTAATTGTATATATTTTATCAAATTT
129 AGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTT
* *** *
82971666 ATTAATATAAACAGTTCTATTAATTAATTTCGGTCAAAATATAAGGGACATGAAAATTAATATTC
194 ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAAAAATGAAAATTAATATTC
82971731 TTTTGAAAAGAATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTA
259 TTTTGAAAAGAATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTA
** * *
82971796 CTGAATTTATTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAATACATGAAAAT
324 CCAAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAAT
*
82971861 TATTATTCTTTTGAAAAGAAAATAA
389 TAATATTCTTTTGAAAAGAAAATAA
* *
82971886 TTAATATAT-AGATTTTATTCATCCAAAATATTAATTGTAT
1 TTAATATATGA-ATTTGATTCATACAAAATATTAATTGTAT
82971926 TTATATAGAG
Statistics
Matches: 420, Mismatches: 29, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
411 1 0.00
412 278 0.66
413 90 0.21
414 51 0.12
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (413 bp):
TTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAAATTATTAATATA
AAAAATTATATTAATTAATTTCGGTCAAAAATAAAAGACATGGAAATTAATATTCTTTTAGAAAG
AATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTAT
TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAAAAATGAAAATTAATATTCTT
TTGAAAAGAATATAATTAATATATAAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
AAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTA
ATATTCTTTTGAAAAGAAAATAA
Found at i:82972422 original size:19 final size:19
Alignment explanation
Indices: 82972398--82972436 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
82972388 TATGGTTTAT
82972398 ATTATCATATTGAATTACA
1 ATTATCATATTGAATTACA
82972417 ATTATCATATTGAATTACA
1 ATTATCATATTGAATTACA
82972436 A
1 A
82972437 GCTATATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (19 bp):
ATTATCATATTGAATTACA
Found at i:82975520 original size:20 final size:21
Alignment explanation
Indices: 82975466--82975505 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
82975456 TATAATCTAA
* *
82975466 ATATTTAAAAATTAATAAAAT
1 ATATGTAAATATTAATAAAAT
82975487 ATATGTAAAT-TTAATAAAA
1 ATATGTAAATATTAATAAAA
82975506 ATTATTCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
ATATGTAAATATTAATAAAAT
Done.