Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 25 of 332
Found at i:7110103 original size:38 final size:37
Alignment explanation
Indices: 7109976--7110103 Score: 100
Period size: 37 Copynumber: 3.4 Consensus size: 37
7109966 CAATAAATAT
* * *
7109976 TATAAAAATTATTAAATTTTAATAAAAAT-ATAAAAAAT
1 TATAAAAATGATAAAATTTT-AT-AAAATCATAAAAAAA
* * *** *
7110014 TAGAAAAA-AATAAAAAAATATAAAATCATAAAATAA
1 TATAAAAATGATAAAATTTTATAAAATCATAAAAAAA
*
7110050 TATAAAAATGGTAAAATTTTATAAAAGTCATAAAAAAA
1 TATAAAAATGATAAAATTTTATAAAA-TCATAAAAAAA
*
7110088 TGT-AAAATGCATAAAA
1 TATAAAAATG-ATAAAA
7110104 AAGGCCCTTT
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
35 5 0.07
36 16 0.23
37 24 0.35
38 24 0.35
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (37 bp):
TATAAAAATGATAAAATTTTATAAAATCATAAAAAAA
Found at i:7110290 original size:16 final size:17
Alignment explanation
Indices: 7110258--7110294 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
7110248 AATTTTTATA
7110258 ATTTTTTTTACGAATTTT
1 ATTTTTTTTAC-AATTTT
*
7110276 ATTTTTTTTACATTTTT
1 ATTTTTTTTACAATTTT
7110293 AT
1 AT
7110295 AATATTCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (17 bp):
ATTTTTTTTACAATTTT
Found at i:7110329 original size:38 final size:37
Alignment explanation
Indices: 7110247--7110330 Score: 89
Period size: 38 Copynumber: 2.2 Consensus size: 37
7110237 TTTTGTATGA
* * ** *
7110247 TAATTTTTATAATTTTTTTTACGAATTTTATTTTTTT
1 TAATTTTTATAATTATTCTTACGAATTTTAAATTTTG
7110284 TACATTTTTATAA-TATTCTTACGAATTTATAAAATTTTG
1 TA-ATTTTTATAATTATTCTTACGAATTT-T-AAATTTTG
7110323 TAATTTTT
1 TAATTTTT
7110331 TCCTATATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
37 15 0.38
38 17 0.44
39 7 0.18
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.62
Consensus pattern (37 bp):
TAATTTTTATAATTATTCTTACGAATTTTAAATTTTG
Found at i:7110930 original size:10 final size:10
Alignment explanation
Indices: 7110917--7110950 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
7110907 TGACTTCCAG
7110917 ATTTTAATTA
1 ATTTTAATTA
7110927 ATTTTAATTA
1 ATTTTAATTA
7110937 ATTAATTAATTA
1 ATT--TTAATTA
7110949 AT
1 AT
7110951 ATTGTTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
12 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATTTTAATTA
Found at i:7113079 original size:36 final size:36
Alignment explanation
Indices: 7113036--7113137 Score: 103
Period size: 31 Copynumber: 3.0 Consensus size: 36
7113026 TAATTAACGC
7113036 ATTTTTATTTACTATTATTTTTGTTCAAGTTATATG
1 ATTTTTATTTACTATTATTTTTGTTCAAGTTATATG
* *
7113072 -TTCTTTATCTTA--ATTA-TGTT-TT-AA-TTA-ACG
1 ATT-TTTAT-TTACTATTATTTTTGTTCAAGTTATATG
7113102 CATTTTTATTTACTATTATTTTTGTTCAAGTTATAT
1 -ATTTTTATTTACTATTATTTTTGTTCAAGTTATAT
7113138 TTATTTTAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 21
0.67 0.05 0.28
Matches are distributed among these distances:
30 5 0.10
31 8 0.16
32 8 0.16
33 5 0.10
34 5 0.10
35 8 0.16
36 8 0.16
37 4 0.08
ACGTcount: A:0.25, C:0.08, G:0.07, T:0.60
Consensus pattern (36 bp):
ATTTTTATTTACTATTATTTTTGTTCAAGTTATATG
Found at i:7123138 original size:26 final size:26
Alignment explanation
Indices: 7123109--7123166 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
7123099 TCTGTTATAT
*
7123109 GGCTGTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * * *
7123135 GGCTCTTTGTGATCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCGATTAAA
7123161 GGCTCT
1 GGCTCT
7123167 CAGGATTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:7145711 original size:18 final size:18
Alignment explanation
Indices: 7145688--7145722 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7145678 AATCTTCCTA
*
7145688 TCTTTTTATTTTTATTTT
1 TCTTTTTATTTTCATTTT
*
7145706 TCTTTTTCTTTTCATTT
1 TCTTTTTATTTTCATTT
7145723 CAATTTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTTTTATTTTCATTTT
Found at i:7146836 original size:19 final size:19
Alignment explanation
Indices: 7146812--7146850 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7146802 AATCATGAAG
7146812 TATGATTTCTATATTGTAT
1 TATGATTTCTATATTGTAT
7146831 TATGATTTCTATATTGTAT
1 TATGATTTCTATATTGTAT
7146850 T
1 T
7146851 GACTTGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.59
Consensus pattern (19 bp):
TATGATTTCTATATTGTAT
Found at i:7151199 original size:65 final size:65
Alignment explanation
Indices: 7151119--7151249 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
7151109 AAAACTATAA
7151119 GTGGATAGACACACGGGCCAGAGACACTGATGTGTGCTTGGCCATGTGAATACCCATGTAGGTTC
1 GTGGATAGACACACGGGCCAGAGACACTGATGTGTGCTTGGCCATGTGAATACCCATGTAGGTTC
*
7151184 GTGGATAGACACACGGGCCAGAGACACTGATGTGTGCTTGGCCATGTGAATACCCCTGTAGGTTC
1 GTGGATAGACACACGGGCCAGAGACACTGATGTGTGCTTGGCCATGTGAATACCCATGTAGGTTC
7151249 G
1 G
7151250 ATATGAGAAA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (65 bp):
GTGGATAGACACACGGGCCAGAGACACTGATGTGTGCTTGGCCATGTGAATACCCATGTAGGTTC
Found at i:7169533 original size:24 final size:24
Alignment explanation
Indices: 7169501--7169559 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
7169491 ATGAATCGGC
* **
7169501 AAAAGCCGAAATG-TCGAAATGCTG
1 AAAAGCCGAAAAGAT-GAAATGCCA
7169525 AAAAGCCGAAAAGATGAAATGCCA
1 AAAAGCCGAAAAGATGAAATGCCA
7169549 AAAAGCCGAAA
1 AAAAGCCGAAA
7169560 GTTAGGCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 30 0.97
25 1 0.03
ACGTcount: A:0.51, C:0.17, G:0.22, T:0.10
Consensus pattern (24 bp):
AAAAGCCGAAAAGATGAAATGCCA
Found at i:7169559 original size:16 final size:16
Alignment explanation
Indices: 7169501--7169559 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
7169491 ATGAATCGGC
*
7169501 AAAAGCCGAAATGTCG
1 AAAAGCCGAAATGCCG
* * *
7169517 AAATGCTGAAAAGCCG
1 AAAAGCCGAAATGCCG
** *
7169533 AAAAGATGAAATGCCA
1 AAAAGCCGAAATGCCG
7169549 AAAAGCCGAAA
1 AAAAGCCGAAA
7169560 GTTAGGCTAC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.51, C:0.17, G:0.22, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:7169817 original size:29 final size:29
Alignment explanation
Indices: 7169784--7169895 Score: 102
Period size: 29 Copynumber: 3.9 Consensus size: 29
7169774 TGATATGATC
7169784 TGGGCCTAATGGGCCATATGAATGTAAAT
1 TGGGCCTAATGGGCCATATGAATGTAAAT
* * * * * *
7169813 TGGGCTTATTGGGTCATAAGAATATGAAT
1 TGGGCCTAATGGGCCATATGAATGTAAAT
* *
7169842 TGGGCC-AGATGGGCCATATAAATG-AGAT
1 TGGGCCTA-ATGGGCCATATGAATGTAAAT
* * *
7169870 TGGGCCCAGTGGGCCATATGCATGTA
1 TGGGCCTAATGGGCCATATGAATGTA
7169896 TGTAGGGATA
Statistics
Matches: 63, Mismatches: 17, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
28 22 0.35
29 41 0.65
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATGAATGTAAAT
Found at i:7169875 original size:28 final size:27
Alignment explanation
Indices: 7169836--7169888 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 27
7169826 TCATAAGAAT
7169836 ATGAATTGGG-CCAGATGGGCCATATAA
1 ATGAATTGGGCCCAG-TGGGCCATATAA
7169863 ATGAGATTGGGCCCAGTGGGCCATAT
1 ATGA-ATTGGGCCCAGTGGGCCATAT
7169889 GCATGTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 4 0.17
28 16 0.67
29 4 0.17
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (27 bp):
ATGAATTGGGCCCAGTGGGCCATATAA
Found at i:7171461 original size:39 final size:40
Alignment explanation
Indices: 7171407--7171649 Score: 347
Period size: 40 Copynumber: 6.2 Consensus size: 40
7171397 AACCCAAGTA
* * *
7171407 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
7171446 CCTTCGGGACTTAGCCC-GATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
7171485 CCTTC--GACTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
7171523 CCTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
7171563 CCTTC-GGATCTTAGTCCC--ATTATAGTAACTAGCACAGATG
1 CCTTCGGGA-CTTAG-CCCGGA-TATAGTAACTAGCACAAATG
7171603 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
7171643 CCTTCGG
1 CCTTCGG
7171650 ATCTTAGTCC
Statistics
Matches: 184, Mismatches: 10, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
37 9 0.05
38 26 0.14
39 44 0.24
40 98 0.53
41 7 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:7171604 original size:80 final size:80
Alignment explanation
Indices: 7171426--7171659 Score: 393
Period size: 80 Copynumber: 3.0 Consensus size: 80
7171416 TTTAGCCGGA
* *
7171426 TATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTAGCACAAATGCCTTC
1 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
**
7171490 -GA-CTTAGTCCGGT
66 GGATCTTAGTCCCAT
*
7171503 TATAGTAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
1 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
7171568 GGATCTTAGTCCCAT
66 GGATCTTAGTCCCAT
*
7171583 TATAGTAACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
1 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
7171648 GGATCTTAGTCC
66 GGATCTTAGTCC
7171660 GGTTATCATC
Statistics
Matches: 147, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
77 34 0.23
78 27 0.18
79 2 0.01
80 84 0.57
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (80 bp):
TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC
GGATCTTAGTCCCAT
Found at i:7179827 original size:80 final size:79
Alignment explanation
Indices: 7179568--7179867 Score: 496
Period size: 80 Copynumber: 3.8 Consensus size: 79
7179558 AACCCAAGTA
* * * * * *
7179568 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTACGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC-GGACTTAGTCCGGTTATAG
7179632 TAACTAGCACAAATG
65 TAACTAGCACAAATG
7179647 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC-GACTTAGTCCGGTTATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGACTTAGTCCGGTTATAGT
7179711 AACTAGCACAAATG
66 AACTAGCACAAATG
7179725 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGA-CTTAGTCCGGTTATAG
*
7179790 TAACTAGCACAGATG
65 TAACTAGCACAAATG
7179805 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGA-CTTAGTCCGGTTAT
7179868 CATCCGAATA
Statistics
Matches: 211, Mismatches: 7, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
78 76 0.36
79 15 0.07
80 120 0.57
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGACTTAGTCCGGTTATAGT
AACTAGCACAAATG
Found at i:7179858 original size:40 final size:40
Alignment explanation
Indices: 7179568--7179851 Score: 450
Period size: 40 Copynumber: 7.2 Consensus size: 40
7179558 AACCCAAGTA
* * *
7179568 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
7179607 CCTACGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
7179647 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
7179687 CCTTC--GACTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
7179725 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
7179765 CCTTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAGATG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
7179805 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
7179845 CCTTCGG
1 CCTTCGG
7179852 ATCTTAGTCC
Statistics
Matches: 225, Mismatches: 15, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
38 36 0.16
39 15 0.07
40 171 0.76
41 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:7200752 original size:74 final size:75
Alignment explanation
Indices: 7200668--7200813 Score: 249
Period size: 74 Copynumber: 2.0 Consensus size: 75
7200658 GAAAATCAGG
7200668 ATTATTCCCTTAGTAATAGAGAAGACAAATGGAAAGTTAGAAAAA-AAATTATATTCTTTCCAAA
1 ATTATTCCCTTAGTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTTTCCAAA
7200732 AGAATATAGA
66 AGAATATAGA
* * * *
7200742 ATTATTCCCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGGAATTATATTCTTTTCAGA
1 ATTATTCCCTTAGTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTTTCCAAA
7200807 AGAATAT
66 AGAATAT
7200814 TAATTTTCAT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
74 44 0.66
75 23 0.34
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (75 bp):
ATTATTCCCTTAGTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTTTCCAAA
AGAATATAGA
Found at i:7201036 original size:138 final size:138
Alignment explanation
Indices: 7200789--7201307 Score: 637
Period size: 138 Copynumber: 3.7 Consensus size: 138
7200779 TAGAAAAAGG
* * * * * * *
7200789 AATTATATTCTTTTCAGAAGAATATTAATTTTCATATCTTTTA-TATTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
* ** * * **
7200853 TATAATTGTTTATATTAATAAATTCAATAAAATGTATACAATTAATATTTTCCATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
7200918 CATATATT
131 CATATATT
* *
7200926 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTGAAATTAATTAG
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
7200991 TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
7201056 CATATATT
131 CATATATT
7201064 AATTATATTCTTTTTCCAAAAGAATATTAATTTCCATGTCTTAATTTCCACGTATTTTATATTTT
1 AATTATATTC--TTTCCAAAAGAATATTAATTTCCATGTC-----TT---C-TA---T-T-TTTT
* *
7201129 GATTAAAATTAATTAATATAACCGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATT
50 GACTAAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATT
7201194 TTGTATGAATCAAATTCATATATT
115 TTGTATGAATCAAATTCATATATT
* * *** * * *
7201218 AATTATATTCTTTTCAAAAAAATATTAATTTTTGTGTCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
7201283 TATAACTGTTTA-ATTTAATAAATTC
66 TATAACTGTTTATA-TTAATAAATTC
7201308 AACAATTAAT
Statistics
Matches: 336, Mismatches: 28, Indels: 35
0.84 0.07 0.09
Matches are distributed among these distances:
137 39 0.12
138 135 0.40
140 29 0.09
143 2 0.01
145 2 0.01
147 2 0.01
148 1 0.00
149 2 0.01
152 24 0.07
153 1 0.00
154 99 0.29
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTCTATTTTTTGACTAAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:7201140 original size:154 final size:152
Alignment explanation
Indices: 7200950--7201248 Score: 499
Period size: 154 Copynumber: 2.0 Consensus size: 152
7200940 CAAAAGAATA
* * * * * *
7200950 TTAATTTCCATGTCTTCTATTTTTTGACTGAAATTAATTAGTATAACTGTTTATATTAATAAATT
1 TTAATTTCCACGTATTCTATATTTTGACTAAAATTAATTAATATAACCGTTTATATTAATAAATT
7201015 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTTTC
66 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTC-TTTT-
*
7201080 CAAAAGAATATTAATTTCCATGTC
129 CAAAAAAATATTAATTTCCATGTC
* *
7201104 TTAATTTCCACGTATTTTATATTTTGATTAAAATTAATTAATATAACCGTTTATATTAATAAATT
1 TTAATTTCCACGTATTCTATATTTTGACTAAAATTAATTAATATAACCGTTTATATTAATAAATT
7201169 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTTCA
66 CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTTCA
7201234 AAAAAATATTAATTT
131 AAAAAATATTAATTT
7201249 TTGTGTCTTT
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
152 16 0.12
153 4 0.03
154 116 0.85
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.46
Consensus pattern (152 bp):
TTAATTTCCACGTATTCTATATTTTGACTAAAATTAATTAATATAACCGTTTATATTAATAAATT
CGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTTCA
AAAAAATATTAATTTCCATGTC
Found at i:7209416 original size:16 final size:16
Alignment explanation
Indices: 7209395--7209425 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7209385 TATGAGGGAT
7209395 TAAATTGCAATTTTAC
1 TAAATTGCAATTTTAC
*
7209411 TAAATTGGAATTTTA
1 TAAATTGCAATTTTA
7209426 AAAGATCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (16 bp):
TAAATTGCAATTTTAC
Found at i:7211363 original size:101 final size:100
Alignment explanation
Indices: 7211176--7211409 Score: 279
Period size: 101 Copynumber: 2.3 Consensus size: 100
7211166 TGAATTGACG
* * * *
7211176 GATAAGACCATAACTGGGTTATGGCACTATGAACATAAGAGCATGGTTGGACCGTGGCAGTGTTT
1 GATAAGACCATAACTAGGTTATGCCACTATGAACATAAGAGCATGGTTGGACCATGACAGTGTTT
* * **
7211241 GTATATAATACCATAGTTGGGCTATGACATTCTAAT
66 ATATATAAGACCATAACTGGGCTATGACATT-TAAT
* * **
7211277 GATAAGACCATAACTAGGTTGTGCCACTATGAACTTAAGATTATGGTTGGACCATGACAGTGTTT
1 GATAAGACCATAACTAGGTTATGCCACTATGAACATAAGAGCATGGTTGGACCATGACAGTGTTT
* ** *
7211342 ATATGTAAGACTGTAACTGGGCTATGGCATTTAAT
66 ATATATAAGACCATAACTGGGCTATGACATTTAAT
* * * *
7211377 GATAAGACCATAATTGGGTTATGGCATTATGAA
1 GATAAGACCATAACTAGGTTATGCCACTATGAA
7211410 TGTAAAGGAT
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
100 32 0.29
101 80 0.71
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (100 bp):
GATAAGACCATAACTAGGTTATGCCACTATGAACATAAGAGCATGGTTGGACCATGACAGTGTTT
ATATATAAGACCATAACTGGGCTATGACATTTAAT
Found at i:7211383 original size:32 final size:32
Alignment explanation
Indices: 7211339--7211404 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
7211329 CATGACAGTG
**
7211339 TTTATATGTAAGACTGTAACTGGGCTATGGCA
1 TTTATATGTAAGACCATAACTGGGCTATGGCA
* *
7211371 TTTA-ATGATAAGACCATAATTGGGTTATGGCA
1 TTTATATG-TAAGACCATAACTGGGCTATGGCA
7211403 TT
1 TT
7211405 ATGAATGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 3 0.10
32 26 0.90
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (32 bp):
TTTATATGTAAGACCATAACTGGGCTATGGCA
Found at i:7212838 original size:101 final size:99
Alignment explanation
Indices: 7212618--7212846 Score: 291
Period size: 101 Copynumber: 2.3 Consensus size: 99
7212608 GAATTGACGA
** *
7212618 ATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGTCCATGGTTGGACCATGACAGTTTATA
1 ATAAGACCATAACTGGGTTATGGCACTACAAACGTAAGACCATGGTTGGACCATGACAGTTTATA
7212683 TGAAAGACCATAGTTGGGCTATGACATTCTAATG
66 TGAAAGACCATAGTTGGGCTATGACATTCTAATG
** ** * **
7212717 ATAAGACCATATTTAAGTTATGGCA-TAACAAACTTAAGACCATGGTTGGACCATGGTAGTGTTT
1 ATAAGACCATAACTGGGTTATGGCACT-ACAAACGTAAGACCATGGTTGGACCAT-G-ACAGTTT
* * *
7212781 ATATGTAAGACCATAAG-TGGGCTATGGCATTCTGATG
63 ATATGAAAGACCAT-AGTTGGGCTATGACATTCTAATG
7212818 ATAAGACCATAACTGGGTTATGGCACTAC
1 ATAAGACCATAACTGGGTTATGGCACTAC
7212847 GAATGTAAAG
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
98 1 0.01
99 44 0.41
100 1 0.01
101 59 0.55
102 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (99 bp):
ATAAGACCATAACTGGGTTATGGCACTACAAACGTAAGACCATGGTTGGACCATGACAGTTTATA
TGAAAGACCATAGTTGGGCTATGACATTCTAATG
Found at i:7212915 original size:24 final size:24
Alignment explanation
Indices: 7212848--7212915 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
7212838 TGGCACTACG
*
7212848 AATGTAAAGTATGAATTGAAGAAA
1 AATGTAAAGTATGAATTGACGAAA
* *
7212872 AATGTAAAGGATGAATTGACGGAA
1 AATGTAAAGTATGAATTGACGAAA
*
7212896 AATTTAAAGTATGAATTGAC
1 AATGTAAAGTATGAATTGAC
7212916 AGTAAATTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.49, C:0.03, G:0.22, T:0.26
Consensus pattern (24 bp):
AATGTAAAGTATGAATTGACGAAA
Found at i:7212922 original size:24 final size:24
Alignment explanation
Indices: 7212852--7212923 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
7212842 ACTACGAATG
*
7212852 TAAAGTATGAATTGA-AGAAAAATG
1 TAAAGTATGAATTGACAG-AAAATT
* *
7212876 TAAAGGATGAATTGACGGAAAATT
1 TAAAGTATGAATTGACAGAAAATT
*
7212900 TAAAGTATGAATTGACAGTAAATT
1 TAAAGTATGAATTGACAGAAAATT
7212924 ACCCAAGTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 40 0.98
25 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAGTATGAATTGACAGAAAATT
Found at i:7225395 original size:85 final size:85
Alignment explanation
Indices: 7225249--7225406 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 85
7225239 AAAAACATTC
* ** * *
7225249 ACAAATAAAATGCTACTTGTTATGGATGCACAACATATTTGCAGGTAAAAGTTGTCAGTAATTTG
1 ACAAATAAAATGCCACTTGTTATAAATGCAAAACATATTTGCAGATAAAAGTTGTCAGTAATTTG
7225314 TGGATGAACCACCAGTATAT
66 TGGATGAACCACCAGTATAT
* * * * * *
7225334 ACAAATAAATTGCCACTTGTTGTAAATGCAAAACATATTTGCTGATACAATTTGTCTGTAATTTG
1 ACAAATAAAATGCCACTTGTTATAAATGCAAAACATATTTGCAGATAAAAGTTGTCAGTAATTTG
7225399 TGGATGAA
66 TGGATGAA
7225407 TCACTAATGT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 62 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (85 bp):
ACAAATAAAATGCCACTTGTTATAAATGCAAAACATATTTGCAGATAAAAGTTGTCAGTAATTTG
TGGATGAACCACCAGTATAT
Found at i:7225557 original size:38 final size:38
Alignment explanation
Indices: 7225506--7225592 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
7225496 TTATGTAAAA
* * * *
7225506 CAGTAAACATGCTTGACATGTATTTAGTTCAATAGTAG
1 CAGTAGACATGCTTAACATGTATTCAATTCAATAGTAG
* * *
7225544 CAGTAGACGTGCTTAACATGTGTTCAATTTAATAGTAG
1 CAGTAGACATGCTTAACATGTATTCAATTCAATAGTAG
*
7225582 CAGTAGGCATG
1 CAGTAGACATG
7225593 TTGATCATGC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (38 bp):
CAGTAGACATGCTTAACATGTATTCAATTCAATAGTAG
Found at i:7226326 original size:12 final size:12
Alignment explanation
Indices: 7226309--7226338 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
7226299 GGACACACGG
7226309 CCGTGTCCATGC
1 CCGTGTCCATGC
7226321 CCGTGTCCATGC
1 CCGTGTCCATGC
7226333 CCGTGT
1 CCGTGT
7226339 AACTCTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.40, G:0.27, T:0.27
Consensus pattern (12 bp):
CCGTGTCCATGC
Found at i:7231218 original size:37 final size:37
Alignment explanation
Indices: 7231175--7231249 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
7231165 TTTTTAAGGT
*
7231175 TTACAAAAGAAATTTTCCTATCCGAAGCCACTTTTAG
1 TTACAAAAGAAATTTGCCTATCCGAAGCCACTTTTAG
*
7231212 TTACAAAAGAAATTTGCCTATCCGAAGCCAGTTTTAG
1 TTACAAAAGAAATTTGCCTATCCGAAGCCACTTTTAG
7231249 T
1 T
7231250 CTATCTTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (37 bp):
TTACAAAAGAAATTTGCCTATCCGAAGCCACTTTTAG
Found at i:7237159 original size:30 final size:30
Alignment explanation
Indices: 7237125--7237185 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
7237115 TCCTTAACTC
7237125 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
7237155 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
7237185 A
1 A
7237186 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:7244569 original size:20 final size:20
Alignment explanation
Indices: 7244527--7244569 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7244517 TTATTTATGA
* *
7244527 ATAAATTTTCATTTTCTACC
1 ATAAATTTTAATTTTCTAAC
7244547 ATAAATTTCTAATTTTC-AAC
1 ATAAATTT-TAATTTTCTAAC
7244567 ATA
1 ATA
7244570 TTCATACATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAATTTTAATTTTCTAAC
Found at i:7247910 original size:48 final size:48
Alignment explanation
Indices: 7247773--7247952 Score: 174
Period size: 48 Copynumber: 3.9 Consensus size: 48
7247763 GGTTAGGTAC
* *
7247773 GATCCCATGTAAGACCATGTCAGGGACATGGCTTTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* **** * *
7247821 AATTTTGTGTAAGACCATAG-CTAGG-C-T---ATCGGCATCGATATGT
1 GATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGT
*
7247864 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * *
7247912 GATCCCACGTAAGACTATATTTGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
7247953 CTACCATGTC
Statistics
Matches: 102, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.01
43 31 0.30
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 65 0.64
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:7248887 original size:20 final size:21
Alignment explanation
Indices: 7248862--7248901 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7248852 TCAAGCAGAC
*
7248862 AAGGGC-ACATGCTCGTGTGG
1 AAGGGCGACATGCCCGTGTGG
7248882 AAGGGCGACATGCCCGTGTG
1 AAGGGCGACATGCCCGTGTG
7248902 TCTTCTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.20, C:0.23, G:0.40, T:0.17
Consensus pattern (21 bp):
AAGGGCGACATGCCCGTGTGG
Found at i:7250237 original size:48 final size:48
Alignment explanation
Indices: 7250114--7250344 Score: 185
Period size: 48 Copynumber: 4.8 Consensus size: 48
7250104 CAAAGGGTAA
* ** * * **
7250114 AATGCTGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCATACATT
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACTCATATAAC
* ** * * *
7250164 AGTGTTGATGCCATGTCCCAGACATGGTATTACACTGACACATATAAC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
* * * **
7250212 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
* * * * * ** *
7250260 GAGGCCGATGCCATGTCCCAGATATGGTCTTACTCTGTGTCTTATAAC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
*
7250308 ATTGCCGATGCCATGAT-CCAAACATGGTCTTACACTG
1 AATGCCGATGCCATG-TCCCAAACATGGTCTTACACTG
7250345 GTTCTCATTA
Statistics
Matches: 142, Mismatches: 38, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
48 108 0.76
49 2 0.01
50 32 0.23
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATAAC
Found at i:7250314 original size:96 final size:96
Alignment explanation
Indices: 7250170--7250380 Score: 271
Period size: 96 Copynumber: 2.2 Consensus size: 96
7250160 CATTAGTGTT
*
7250170 GATGCCATGTCCCAGACATGGTATTACACTGACACATATAACAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTATTACACTGACACATATAACAATGCCGATGCCATGATCCAAAC
7250235 ATGGTCTTACACTGGCTCACATGTCGAGGCC
66 ATGGTCTTACACTGGCTCACATGTCGAGGCC
* * * *** * *
7250266 GATGCCATGTCCCAGATATGGTCTTACTCTGTGTCTTATAACATTGCCGATGCCATGATCCAAAC
1 GATGCCATGTCCCAGACATGGTATTACACTGACACATATAACAATGCCGATGCCATGATCCAAAC
* * * *
7250331 ATGGTCTTACACTGGTTCTCAT-TATGTGGCC
66 ATGGTCTTACACTGGCTCACATGT-CGAGGCC
* *
7250362 GATACCATGTCCCAAACAT
1 GATGCCATGTCCCAGACAT
7250381 AATCTTACAC
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 1 0.01
96 97 0.99
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTATTACACTGACACATATAACAATGCCGATGCCATGATCCAAAC
ATGGTCTTACACTGGCTCACATGTCGAGGCC
Found at i:7250363 original size:48 final size:48
Alignment explanation
Indices: 7250120--7250391 Score: 173
Period size: 48 Copynumber: 5.6 Consensus size: 48
7250110 GTAAAATGCT
** * **
7250120 GATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCATACATTA-GT-GTT
1 GATGCCATGTCCCAAACATGGTCTTACACT-GGT-TC-T-CATTACGTGGCC
* * * * *
7250170 GATGCCATGTCCCAGACATGGTATTACACT-G-ACACATATAACAAT-GCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGTTCTCAT-T-AC-GTGGCC
* * * *
7250218 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGT-CGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGTTCTCAT-TACGTGGCC
* * * * * * *
7250266 GATGCCATGTCCCAGATATGGTCTTACTCT-GTGTCTTATAACATTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGT-TCTCATTACGTGGCC
*
7250314 GATGCCATGAT-CCAAACATGGTCTTACACTGGTTCTCATTATGTGGCC
1 GATGCCATG-TCCCAAACATGGTCTTACACTGGTTCTCATTACGTGGCC
* **
7250362 GATACCATGTCCCAAACATAATCTTACACT
1 GATGCCATGTCCCAAACATGGTCTTACACT
7250392 AGCACACATA
Statistics
Matches: 173, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 2 0.01
47 2 0.01
48 127 0.73
49 4 0.02
50 34 0.20
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGTTCTCATTACGTGGCC
Found at i:7257557 original size:24 final size:24
Alignment explanation
Indices: 7257530--7257575 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
7257520 TTCCTGACCA
7257530 CCAAATTTTTCGAATAAGCTCAAG
1 CCAAATTTTTCGAATAAGCTCAAG
*
7257554 CCAAATTTTTTGAATAAGCTCA
1 CCAAATTTTTCGAATAAGCTCA
7257576 TCGTCTTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (24 bp):
CCAAATTTTTCGAATAAGCTCAAG
Found at i:7262579 original size:96 final size:96
Alignment explanation
Indices: 7262422--7262679 Score: 281
Period size: 96 Copynumber: 2.7 Consensus size: 96
7262412 TCATGTCTCG
* * *
7262422 AACATGGTTTTACATTGGCTCTCACACATCGATGTCGATGCCATGTCCCAGACATGGTCTTACA-
1 AACATGGTCTTACATTGG--CTCACATATCGATGCCGATGCCATGTCCCAGACATGGTCTTACAC
*
7262486 TTGACACAT-ATAACAATACCGATGCCATGTTCC-A
64 TAG-CAC-TCATAACAATACCGATGCCATG-TCCTA
* *
7262520 AACATGGTCTTACATTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
1 AACATGGTCTTACATTGGCTCACATATCGATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
* ** *
7262585 GCTCTCATCTCAATGCCGATGCCATGTCCTA
66 GCACTCATAACAATACCGATGCCATGTCCTA
* * * * * * *
7262616 GACATGGTCTTACTTTGGGTCTCATAAC-ATTGCCGATGCCATGTTCCAAACATGGTCTTACACT
1 AACATGGTCTTACATTGGCTCACATATCGA-TGCCGATGCCATGTCCCAGACATGGTCTTACACT
7262680 TGTTCTCATT
Statistics
Matches: 137, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
95 5 0.04
96 113 0.82
97 2 0.01
98 17 0.12
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (96 bp):
AACATGGTCTTACATTGGCTCACATATCGATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
GCACTCATAACAATACCGATGCCATGTCCTA
Found at i:7262627 original size:144 final size:144
Alignment explanation
Indices: 7262457--7262721 Score: 367
Period size: 144 Copynumber: 1.8 Consensus size: 144
7262447 ACATCGATGT
7262457 CGATGCCATGTCCCAGACATGGTCTTACATTGACACAT-ATAACAATACCGATGCCATGTTCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACATTGACAC-TCATAACAATACCGATGCCATGTTCCAA
* *
7262521 ACATGGTCTTACA-TTG-GCTCA-CATGTCGAGGCCGATGCCATGTCCCAGACATGGTCTTACAC
65 ACATGGTCTTACACTTGTGCTCATCATGT---GGCCAATGCCACGTCCCAGACATGGTCTTACAC
7262583 TAGCTCTCATCTCAATGC
127 TAGCTCTCATCTCAATGC
* * *** * *
7262601 CGATGCCATGTCCTAGACATGGTCTTACTTTGGGTCTCATAACATTGCCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACATTGACACTCATAACAATACCGATGCCATGTTCCAAA
* *
7262666 CATGGTCTTACACTTGTTCTCATTATGTGGCCAATGCCACGTCCCAGACATGGTCT
66 CATGGTCTTACACTTGTGCTCATCATGTGGCCAATGCCACGTCCCAGACATGGTCT
7262722 ATGACACCCC
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
143 1 0.01
144 94 0.89
145 3 0.03
146 4 0.04
147 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (144 bp):
CGATGCCATGTCCCAGACATGGTCTTACATTGACACTCATAACAATACCGATGCCATGTTCCAAA
CATGGTCTTACACTTGTGCTCATCATGTGGCCAATGCCACGTCCCAGACATGGTCTTACACTAGC
TCTCATCTCAATGC
Found at i:7262687 original size:48 final size:47
Alignment explanation
Indices: 7262423--7262688 Score: 230
Period size: 48 Copynumber: 5.5 Consensus size: 47
7262413 CATGTCTCGA
* * * * *
7262423 ACATGGTTTTACATTGGCTCTCACACATCGATGTCGATGCCATGTCCCAG
1 ACATGGTCTTACATT-GCTCTCATA-A-CAATGCCGATGCCATGTTCCAG
* * *
7262473 ACATGGTCTTACATTGACACAT-ATAACAATACCGATGCCATGTTCCAA
1 ACATGGTCTTACATTG-CTC-TCATAACAATGCCGATGCCATGTTCCAG
* ** * * *
7262521 ACATGGTCTTACATTGGCTCACATGTCGAGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACATT-GCTCTCATAACAATGCCGATGCCATGTTCCAG
* **
7262569 ACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATG-TCCTAG
1 ACATGGTCTTACA-TTGCTCTCATAACAATGCCGATGCCATGTTCC-AG
* * * *
7262617 ACATGGTCTTACTTTGGGTCTCATAACATTGCCGATGCCATGTTCCAA
1 ACATGGTCTTACATT-GCTCTCATAACAATGCCGATGCCATGTTCCAG
*
7262665 ACATGGTCTTACACTTGTTCTCAT
1 ACATGGTCTTACA-TTGCTCTCAT
7262689 TATGTGGCCA
Statistics
Matches: 175, Mismatches: 32, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
47 3 0.02
48 144 0.82
49 9 0.05
50 18 0.10
51 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (47 bp):
ACATGGTCTTACATTGCTCTCATAACAATGCCGATGCCATGTTCCAG
Found at i:7262703 original size:48 final size:47
Alignment explanation
Indices: 7262457--7262721 Score: 177
Period size: 48 Copynumber: 5.5 Consensus size: 47
7262447 ACATCGATGT
* * * * *
7262457 CGATGCCATGTCCCAGACATGGTCTTACA-TTGACACATATAACAAT-AC
1 CGATGCCATGTTCCAGACATGGTCTTACACTTGTCTCAT-T-A-TATGGC
* * * *
7262505 CGATGCCATGTTCCAAACATGGTCTTACA-TTGGCTCA-CATGTCGAGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTTGTCTCATTATAT---GGC
* *
7262553 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCA-AT-GC
1 CGATGCCATGTTCCAGACATGGTCTTACACTTG-TCTCAT-T-ATATGGC
* * * *
7262601 CGATGCCATG-TCCTAGACATGGTCTTAC-TTTGGGTCTCATAACATTGC
1 CGATGCCATGTTCC-AGACATGGTCTTACACTT--GTCTCATTATATGGC
* *
7262649 CGATGCCATGTTCCAAACATGGTCTTACACTTGTTCTCATTATGTGGC
1 CGATGCCATGTTCCAGACATGGTCTTACACTTG-TCTCATTATATGGC
* * *
7262697 CAATGCCACGTCCCAGACATGGTCT
1 CGATGCCATGTTCCAGACATGGTCT
7262722 ATGACACCCC
Statistics
Matches: 172, Mismatches: 28, Indels: 34
0.74 0.12 0.15
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 1 0.01
47 6 0.03
48 149 0.87
49 8 0.05
50 4 0.02
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTTCCAGACATGGTCTTACACTTGTCTCATTATATGGC
Found at i:7282135 original size:24 final size:24
Alignment explanation
Indices: 7282103--7282157 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
7282093 ACACCTTCAT
* *
7282103 ATACATATACACTTGAACACATAC
1 ATACATATACACATAAACACATAC
* *
7282127 ATACTTATACACATAAACACATAT
1 ATACATATACACATAAACACATAC
7282151 ATACATA
1 ATACATA
7282158 CCTTCCATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:7285455 original size:15 final size:15
Alignment explanation
Indices: 7285435--7285493 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
7285425 AAAACCTAGA
*
7285435 ATAAAGAAATCCAAC
1 ATAAAGAAATCCAAG
*
7285450 ATAAAGAAATCCCAG
1 ATAAAGAAATCCAAG
* * *
7285465 ATAGAGAAGTCGAAG
1 ATAAAGAAATCCAAG
*
7285480 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
7285494 ATTACAATAC
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.54, C:0.15, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:7286883 original size:22 final size:21
Alignment explanation
Indices: 7286858--7286898 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7286848 CATATATGTA
7286858 CATACATATCATGAATTTTATT
1 CATACATATC-TGAATTTTATT
* *
7286880 CATACCTTTCTGAATTTTA
1 CATACATATCTGAATTTTA
7286899 ACTCATCGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.32, C:0.17, G:0.05, T:0.46
Consensus pattern (21 bp):
CATACATATCTGAATTTTATT
Found at i:7287413 original size:19 final size:19
Alignment explanation
Indices: 7287389--7287433 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
7287379 CAGGGGCATG
*
7287389 CCCGTGTGCCTTTGACACA
1 CCCGTGTACCTTTGACACA
7287408 CCCGTGTACCTTTGACACA
1 CCCGTGTACCTTTGACACA
7287427 CCCGTGT
1 CCCGTGT
7287434 CCTCAGGCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.16, C:0.38, G:0.20, T:0.27
Consensus pattern (19 bp):
CCCGTGTACCTTTGACACA
Found at i:7293644 original size:28 final size:28
Alignment explanation
Indices: 7293613--7293794 Score: 220
Period size: 28 Copynumber: 6.5 Consensus size: 28
7293603 TCAATATTTT
**
7293613 GCACACTAAGTGCCATACCCAATGTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
* * *
7293641 GCACACTAAGTGCCATATTCAATCTTTC
1 GCACACTAAGTGCCATAATCAATGTCTC
** * ** **
7293669 ATACACTAAGTGCTATGCTTGATGTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
* *
7293697 GCACACTAAGTGGCACAATCAATGTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
* *
7293725 GCACACTAAGTGCCATAATAAATGTCTA
1 GCACACTAAGTGCCATAATCAATGTCTC
7293753 GCACACTAAGTGCCATAATCAATGTCTC
1 GCACACTAAGTGCCATAATCAATGTCTC
7293781 GCACACTAAGTGCC
1 GCACACTAAGTGCC
7293795 CTACATAACC
Statistics
Matches: 126, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 126 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (28 bp):
GCACACTAAGTGCCATAATCAATGTCTC
Found at i:7296155 original size:22 final size:22
Alignment explanation
Indices: 7296130--7296174 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7296120 GGATATAAAC
7296130 TTACTCTTATCATAAACTTATA
1 TTACTCTTATCATAAACTTATA
7296152 TTACTCTTATCATAAACTTATA
1 TTACTCTTATCATAAACTTATA
7296174 T
1 T
7296175 GCTAACATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.47
Consensus pattern (22 bp):
TTACTCTTATCATAAACTTATA
Found at i:7305543 original size:23 final size:23
Alignment explanation
Indices: 7305500--7305549 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
7305490 ACAACCAATT
*
7305500 TCATGCTTATATCCAAACCAAAA
1 TCATGCTTAAATCCAAACCAAAA
* *
7305523 TCATGC-TAAATCACAAGCCAAAG
1 TCATGCTTAAATC-CAAACCAAAA
7305546 TCAT
1 TCAT
7305550 ACCAAAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.24
Consensus pattern (23 bp):
TCATGCTTAAATCCAAACCAAAA
Found at i:7306344 original size:42 final size:41
Alignment explanation
Indices: 7306244--7306406 Score: 177
Period size: 43 Copynumber: 3.8 Consensus size: 41
7306234 AGCTCGTACA
* * *
7306244 ATGCCTATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCCAGACGTGGTCTTACACGAAATTAAATA-CG
7306287 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATTAAATACG
1 ATGCCA-TGTCCCAGAC-GTGGTCTTACACGAAATTAAATACG
* *
7306329 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CA
1 ATGCC-ATGTCCCAGACGTGGTCTTACACG-AAAT-T-AAATACG
*
7306373 ATGCCAATGTCCCAGACGTAGTCTTACACGAAAT
1 ATGCC-ATGTCCCAGACGTGGTCTTACACGAAAT
7306407 CACATATTAG
Statistics
Matches: 105, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
42 29 0.28
43 42 0.40
44 30 0.29
45 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (41 bp):
ATGCCATGTCCCAGACGTGGTCTTACACGAAATTAAATACG
Found at i:7306397 original size:86 final size:85
Alignment explanation
Indices: 7306244--7306406 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 85
7306234 AGCTCGTACA
* * * * * *
7306244 ATGCCTATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGACAGAGT
7306309 CTTACACGAAATTAAATACG
66 CTTACACGAAATTAAATACG
*
7306329 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCAATGCCAATGTCCCAGAC-GT
1 ATGCCGATGTCCCAGACATGGTCTTACACGT-AATC-AAATATCAATGCCAATGTCCCAGACAG-
7306392 AGTCTTACACGAAAT
63 AGTCTTACACGAAAT
7306407 CACATATTAG
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
85 29 0.43
86 37 0.54
87 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAATCAAATATCAATGCCAATGTCCCAGACAGAGT
CTTACACGAAATTAAATACG
Found at i:7306427 original size:44 final size:42
Alignment explanation
Indices: 7306244--7306427 Score: 155
Period size: 43 Copynumber: 4.3 Consensus size: 42
7306234 AGCTCGTACA
* *
7306244 ATGCCTATGTCCCAGACGTGGTCTTACATGTAATCA-AATATCG
1 ATGCCTATGTCCCAGACGTGGTCTTACACGAAATCACAATA--G
*
7306287 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATTA-AATACG
1 ATGCCTA-TGTCCCAGAC-GTGGTCTTACACGAAATCACAATA-G
* * *
7306329 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCA-
1 ATGCCTATGTCCCAGACGTGGTCTTACACG-AAATCAC-AAT-AG
* *
7306373 ATGCCAATGTCCCAGACGTAGTCTTACACGAAATCACATATTAG
1 ATGCCTATGTCCCAGACGTGGTCTTACACGAAATCACA-A-TAG
7306417 AAT-CCTATGTC
1 -ATGCCTATGTC
7306428 ATGACATATG
Statistics
Matches: 118, Mismatches: 11, Indels: 23
0.78 0.07 0.15
Matches are distributed among these distances:
42 30 0.25
43 46 0.39
44 36 0.31
45 5 0.04
46 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCTATGTCCCAGACGTGGTCTTACACGAAATCACAATAG
Found at i:7306792 original size:8 final size:8
Alignment explanation
Indices: 7306779--7306806 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7306769 TAACCCTCAT
7306779 ATTTTCAC
1 ATTTTCAC
7306787 ATTTTCAC
1 ATTTTCAC
7306795 ATTTTCAC
1 ATTTTCAC
7306803 ATTT
1 ATTT
7306807 GAACACTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (8 bp):
ATTTTCAC
Found at i:7318034 original size:27 final size:27
Alignment explanation
Indices: 7318004--7318078 Score: 62
Period size: 27 Copynumber: 2.8 Consensus size: 27
7317994 ATATAACCGG
*
7318004 CACACAGCCCTAGGTAAATATGATTGA
1 CACACAGCCCTAGGTAAATATGATAGA
* * * * * *
7318031 CACAGAGTCATCGATAAATATGATAGG
1 CACACAGCCCTAGGTAAATATGATAGA
*
7318058 CACATAGCCACTA-GTAAATAT
1 CACACAGCC-CTAGGTAAATAT
7318079 AATTTGCACA
Statistics
Matches: 35, Mismatches: 12, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
CACACAGCCCTAGGTAAATATGATAGA
Found at i:7318525 original size:27 final size:27
Alignment explanation
Indices: 7318495--7318639 Score: 152
Period size: 27 Copynumber: 5.4 Consensus size: 27
7318485 CAAAACAATC
**
7318495 ATTTTACCCTATAAGGGTATTTCGATA
1 ATTTTACAATATAAGGGTATTTCGATA
* * * *
7318522 ATTTTACACTACAAGGGTGTTTCGGTA
1 ATTTTACAATATAAGGGTATTTCGATA
*
7318549 ATTTTA-AAAACTAAGGGTATTTCGATA
1 ATTTTACAATA-TAAGGGTATTTCGATA
* *
7318576 ATTTTACAATCTAAGGGTATTT-TAGTA
1 ATTTTACAATATAAGGGTATTTCGA-TA
*
7318603 ATTTTACAA-ACTAGGGGTATTTCGATA
1 ATTTTACAATA-TAAGGGTATTTCGATA
7318630 ATTTTACAAT
1 ATTTTACAAT
7318640 TCGAGGGCAT
Statistics
Matches: 97, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
26 3 0.03
27 91 0.94
28 3 0.03
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACAATATAAGGGTATTTCGATA
Found at i:7318553 original size:54 final size:54
Alignment explanation
Indices: 7318506--7318639 Score: 198
Period size: 54 Copynumber: 2.5 Consensus size: 54
7318496 TTTTACCCTA
* * * *
7318506 TAAGGGTATTTCGATAATTTTACACTAC-AAGGGTGTTTCGGTAATTTTAAAAAC
1 TAAGGGTATTTCGATAATTTTACAAT-CTAAGGGTATTTCAGTAATTTTACAAAC
*
7318560 TAAGGGTATTTCGATAATTTTACAATCTAAGGGTATTTTAGTAATTTTACAAAC
1 TAAGGGTATTTCGATAATTTTACAATCTAAGGGTATTTCAGTAATTTTACAAAC
*
7318614 TAGGGGTATTTCGATAATTTTACAAT
1 TAAGGGTATTTCGATAATTTTACAAT
7318640 TCGAGGGCAT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 1 0.01
54 72 0.99
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.40
Consensus pattern (54 bp):
TAAGGGTATTTCGATAATTTTACAATCTAAGGGTATTTCAGTAATTTTACAAAC
Found at i:7318657 original size:27 final size:26
Alignment explanation
Indices: 7318507--7318658 Score: 124
Period size: 27 Copynumber: 5.7 Consensus size: 26
7318497 TTTACCCTAT
* *
7318507 AAGGGTATTTCGATAATTTTACACTAC
1 AAGGGTATTTCAATAATTTTACAAT-C
* ** * *
7318534 AAGGGTGTTTCGGTAATTTTAAAAAC
1 AAGGGTATTTCAATAATTTTACAATC
*
7318560 TAAGGGTATTTCGATAATTTTACAATC
1 -AAGGGTATTTCAATAATTTTACAATC
* * *
7318587 TAAGGGTATTTTAGTAATTTTACAAAC
1 -AAGGGTATTTCAATAATTTTACAATC
* *
7318614 TAGGGGTATTTCGATAATTTTACAATTC
1 -AAGGGTATTTCAATAATTTTACAA-TC
* *
7318642 GAGGGCATTTCAATAAT
1 AAGGGTATTTCAATAAT
7318659 CTAAACAGTT
Statistics
Matches: 101, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.38
Consensus pattern (26 bp):
AAGGGTATTTCAATAATTTTACAATC
Found at i:7331361 original size:59 final size:59
Alignment explanation
Indices: 7331263--7331381 Score: 184
Period size: 59 Copynumber: 2.0 Consensus size: 59
7331253 TAGGATTGAC
*
7331263 ATCATCCAAAGGAATCTAACCAACAACATAATTTGCCATTCTTCAATTTCAAAAGGTAT
1 ATCATCCAAAGGAATCCAACCAACAACATAATTTGCCATTCTTCAATTTCAAAAGGTAT
* * * * *
7331322 ATCATCCAAAGGAATCCAACCAACAACGTTATTTTCCATTCTTCAGTTTCAGAAGGTAT
1 ATCATCCAAAGGAATCCAACCAACAACATAATTTGCCATTCTTCAATTTCAAAAGGTAT
7331381 A
1 A
7331382 CATTCAACCT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (59 bp):
ATCATCCAAAGGAATCCAACCAACAACATAATTTGCCATTCTTCAATTTCAAAAGGTAT
Found at i:7337110 original size:27 final size:27
Alignment explanation
Indices: 7337080--7337139 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
7337070 ATATATATTC
*
7337080 AATTATGGTATGTTAAAATATTAGACA
1 AATTATGGTATGATAAAATATTAGACA
* *
7337107 AATTAT-GTTTGATAAAATTTTAGACA
1 AATTATGGTATGATAAAATATTAGACA
7337133 AATTATG
1 AATTATG
7337140 TTTGATATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.40
Consensus pattern (27 bp):
AATTATGGTATGATAAAATATTAGACA
Found at i:7337129 original size:26 final size:26
Alignment explanation
Indices: 7337093--7337146 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
7337083 TATGGTATGT
7337093 TAAAATATTAGACAAATTATGTTTGA
1 TAAAATATTAGACAAATTATGTTTGA
*
7337119 TAAAATTTTAGACAAATTATGTTTGA
1 TAAAATATTAGACAAATTATGTTTGA
7337145 TA
1 TA
7337147 TATTCGTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (26 bp):
TAAAATATTAGACAAATTATGTTTGA
Found at i:7339213 original size:22 final size:22
Alignment explanation
Indices: 7339188--7339234 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7339178 AACGCTGTAG
7339188 ACAGGACAGAACATAGCCGTAA
1 ACAGGACAGAACATAGCCGTAA
* * *
7339210 ACAGGACAGCATATAGCTGTAA
1 ACAGGACAGAACATAGCCGTAA
7339232 ACA
1 ACA
7339235 TCGCAGCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.21, G:0.21, T:0.13
Consensus pattern (22 bp):
ACAGGACAGAACATAGCCGTAA
Found at i:7339465 original size:22 final size:23
Alignment explanation
Indices: 7339437--7339498 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
7339427 GCAAATACGT
*
7339437 TTGGCACACAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* *
7339459 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
7339481 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
7339499 TAGAATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:7340189 original size:27 final size:27
Alignment explanation
Indices: 7339979--7340341 Score: 216
Period size: 27 Copynumber: 13.4 Consensus size: 27
7339969 TTTCACCCTA
* * * * *
7339979 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGATAATTTTACAAAT
* * * *
7340006 CAAGGTTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTTGATAATTTTACAAAT
* **
7340033 CAATGGTATTTCT-ATAATTTTTGAAAGT
1 CAAGGGTATTT-TGATAATTTTACAAA-T
**
7340061 CAAGGGTATTTTTG-TAATTTTGTAAAT
1 CAAGGGTA-TTTTGATAATTTTACAAAT
* *
7340088 C-AGTGTATTTATG-TAATTTTCCAAAT
1 CAAGGGTATTT-TGATAATTTTACAAAT
*
7340114 CAAGGGTATTTTGGTAATTTT-CTAAAT
1 CAAGGGTATTTTGATAATTTTAC-AAAT
* *
7340141 CAACGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * *
7340168 CGAGGGTATTTCGATAATTTTACAAGT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * * **
7340195 CGAGGATATTTTGGTAATTTTACAGGT
1 CAAGGGTATTTTGATAATTTTACAAAT
** *
7340222 CAAGGGTATTTCAATAATTTCACAAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
* * *
7340249 C-AGTGGTATTTTGGTAATTTTTACGAAC
1 CAAG-GGTATTTTGATAA-TTTTACAAAT
* ** * * *
7340277 CACGATTATTTTGGTAATTTTTCTAAT
1 CAAGGGTATTTTGATAATTTTACAAAT
** * ** *
7340304 TGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGATAATTTTACAAAT
7340331 CAAGGGTATTT
1 CAAGGGTATTT
7340342 CAATAATTCT
Statistics
Matches: 263, Mismatches: 61, Indels: 24
0.76 0.18 0.07
Matches are distributed among these distances:
25 3 0.01
26 24 0.09
27 194 0.74
28 38 0.14
29 4 0.02
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGATAATTTTACAAAT
Found at i:7341869 original size:38 final size:38
Alignment explanation
Indices: 7341827--7341912 Score: 118
Period size: 38 Copynumber: 2.3 Consensus size: 38
7341817 CATGTAAAAC
*
7341827 AGTAGACATGCTAAACATGTATTTAGTTCAACAGTAAT
1 AGTAGACATGCTAAACATGTATTTAGTTCAAAAGTAAT
* * * *
7341865 AGTAGACATGCTTAACATGTGTTTGGTTTAAAAGTAAT
1 AGTAGACATGCTAAACATGTATTTAGTTCAAAAGTAAT
*
7341903 AGTAGGCATG
1 AGTAGACATG
7341913 TTGTTCATGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (38 bp):
AGTAGACATGCTAAACATGTATTTAGTTCAAAAGTAAT
Found at i:7344315 original size:29 final size:29
Alignment explanation
Indices: 7344249--7344367 Score: 143
Period size: 29 Copynumber: 4.2 Consensus size: 29
7344239 CACATACCTG
* * * *
7344249 TATATGGCCCACTAGACCC-AATTATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
7344277 CACATGGCCCATTAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
7344306 TATATGGCCCTTTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
7344335 TATGTGGCCCATTAGGCCCAAATCACA-T
1 TATATGGCCCATTAGGCCCAAATCACATT
7344363 TATAT
1 TATAT
7344368 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 20 0.26
29 56 0.74
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:7348397 original size:16 final size:18
Alignment explanation
Indices: 7348376--7348410 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7348366 ACTTTTGCTG
7348376 ATTTTCT-G-GTCATACT
1 ATTTTCTCGAGTCATACT
7348392 ATTTTCTCGAGTCATACT
1 ATTTTCTCGAGTCATACT
7348410 A
1 A
7348411 AGATCCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 1 0.06
18 9 0.53
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (18 bp):
ATTTTCTCGAGTCATACT
Found at i:7348922 original size:16 final size:16
Alignment explanation
Indices: 7348903--7348934 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7348893 AATTGTTTTA
7348903 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
7348919 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
7348935 ACTCTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:7349199 original size:50 final size:50
Alignment explanation
Indices: 7349145--7349516 Score: 291
Period size: 50 Copynumber: 7.6 Consensus size: 50
7349135 CTGGTACGCA
* * * * *
7349145 TAGTAGCTTGTACTTAGTACTACACATGCGACCTATCAATATGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACATG
* * * * * *
7349195 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACATG
* *
7349245 TAGTAGCCTGCACTTAGTACTACACACGTG----ATCGAA---GTTA-ATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATC-AATCTGATACATG
* * *
7349288 -GGTACGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACG
1 TAGTA-GCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACATG
* * ** * * * *
7349338 TAGTATCCTGCACTTAGTACTACACACGTGATTTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACATG
* * ** * * *
7349388 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGT--ATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCTA-TCAATCTGATACATG
* * *
7349437 CATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACATG
1 --TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACATG
*
7349489 TAGTAGCCTGCACTTAGTACTGCACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
7349517 TGACTCACAA
Statistics
Matches: 254, Mismatches: 50, Indels: 36
0.75 0.15 0.11
Matches are distributed among these distances:
42 3 0.01
43 25 0.10
44 3 0.01
46 4 0.02
47 4 0.02
49 8 0.03
50 170 0.67
51 33 0.13
52 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGATACATG
Found at i:7349315 original size:143 final size:145
Alignment explanation
Indices: 7349156--7349521 Score: 565
Period size: 143 Copynumber: 2.5 Consensus size: 145
7349146 AGTAGCTTGT
*
7349156 ACTTAGTACTACACATGCGACCTATCAATATGGTACATGTAGTAGCCTGCACTTAGTACTACACA
1 ACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACA
* * *
7349221 CGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
66 CGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
*
7349286 TGGGTA-C-GCCTGC
131 CGGGTAGCAGCCTGC
* * *
7349299 ACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTATCCTGCACTTAGTACTACACA
1 ACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACA
*
7349364 CGTGATTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
66 CGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
7349429 CGGGTATGCATAGTAGCCTGC
131 CGGGTA-GC-----AGCCTGC
* *
7349450 ACTTAGTACTACACATGCAACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTGCACA
1 ACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACA
7349515 CGTGACT
66 CGTGACT
7349522 CACAACGAAT
Statistics
Matches: 200, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
143 127 0.63
145 1 0.00
151 72 0.36
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (145 bp):
ACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACA
CGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
CGGGTAGCAGCCTGC
Found at i:7349333 original size:93 final size:93
Alignment explanation
Indices: 7349200--7349369 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
7349190 ACATGTAGTA
* * * *
7349200 GCCTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTAC
1 GCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTAC
7349265 TACACACGTGATCGAAGTTAATGGGTAC
66 TACACACGTGATCGAAGTTAATGGGTAC
* * *
7349293 GCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTATCCTGCACTTAGTAC
1 GCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTAC
7349358 TACACACGTGAT
66 TACACACGTGAT
7349370 TTAACCATCT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (93 bp):
GCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTAC
TACACACGTGATCGAAGTTAATGGGTAC
Found at i:7354330 original size:54 final size:54
Alignment explanation
Indices: 7354246--7354421 Score: 264
Period size: 54 Copynumber: 3.3 Consensus size: 54
7354236 ATATCTGATC
* * *
7354246 TATATCTGTTCTGGTGGCTCAGCCACGATTATATAATCTGGTGGCTCTGCCACA
1 TATATCTGTTCTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACA
* *
7354300 TATATCTGTTCTGGTGGCTCTGCCATGATTATCTAATCTGGTGCCTCTGCCACA
1 TATATCTGTTCTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACA
* * *
7354354 TATATCTGTTCTGGTGGCTCTGCCACGACTATCTGTATCTGGTGACTCTGTCACA
1 TATATCTGTTCTGGTGGCTCTGCCACGATTATCT-AATCTGGTGACTCTGCCACA
7354409 T-TATCTGTTCTGG
1 TATATCTGTTCTGG
7354422 CAGCCATGCT
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 94 0.84
55 18 0.16
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
TATATCTGTTCTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACA
Found at i:7354413 original size:27 final size:26
Alignment explanation
Indices: 7354248--7354421 Score: 195
Period size: 27 Copynumber: 6.5 Consensus size: 26
7354238 ATCTGATCTA
*
7354248 TATCTGTTCTGGTGGCTCAGCCACGAT
1 TATCTGTTCTGGTGGCTCTGCCAC-AT
* **
7354275 TATATAATCTGGTGGCTCTGCCACAT
1 TATCTGTTCTGGTGGCTCTGCCACAT
*
7354301 ATATCTGTTCTGGTGGCTCTGCCATGAT
1 -TATCTGTTCTGGTGGCTCTGCCA-CAT
** *
7354329 TATCTAATCTGGTGCCTCTGCCACAT
1 TATCTGTTCTGGTGGCTCTGCCACAT
*
7354355 ATATCTGTTCTGGTGGCTCTGCCACGAC
1 -TATCTGTTCTGGTGGCTCTGCCAC-AT
* *
7354383 TATCTGTATCTGGTGACTCTGTCACAT
1 TATCTGT-TCTGGTGGCTCTGCCACAT
7354410 TATCTGTTCTGG
1 TATCTGTTCTGG
7354422 CAGCCATGCT
Statistics
Matches: 123, Mismatches: 19, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
26 9 0.07
27 96 0.78
28 18 0.15
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
TATCTGTTCTGGTGGCTCTGCCACAT
Found at i:7362211 original size:27 final size:27
Alignment explanation
Indices: 7362173--7362316 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
7362163 AAGTGTCCTA
*
7362173 GTGGCTATGCCACAAATATCTGATCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
* * *
7362200 GTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTCTGCCACAAATATCTGATCTG
* * *
7362227 GTGGCTCTGCCACGATTATCTGATATG
1 GTGGCTCTGCCACAAATATCTGATCTG
* *
7362254 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
* * *
7362281 GTGGCTCTGCCACGATTATTTGTATCTG
1 GTGGCTCTGCCACAAATATCTG-ATCTG
*
7362309 GTGACTCT
1 GTGGCTCT
7362317 ATCACATTAT
Statistics
Matches: 95, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
27 84 0.88
28 11 0.12
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAAATATCTGATCTG
Found at i:7362256 original size:54 final size:54
Alignment explanation
Indices: 7362170--7362333 Score: 231
Period size: 54 Copynumber: 3.0 Consensus size: 54
7362160 AGGAAGTGTC
* * *
7362170 CTAGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTAGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
7362224 CTAGTGGCTCTGCCACGATTATCTGATATGGTGGCTCTGCCACATATATCTGTT
1 CTAGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * **
7362278 CTGGTGGCTCTGCCACGATTATTTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTAGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
7362332 CT
1 CT
7362334 GGCAGCCATG
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 83 0.84
55 16 0.16
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
CTAGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:7362326 original size:81 final size:81
Alignment explanation
Indices: 7362173--7362329 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
7362163 AAGTGTCCTA
* *
7362173 GTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTAGTGGCTCTGCC
1 GTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTAGTGACTCTACC
7362238 ACGATTATCTGATATG
66 ACGATTATCTGATATG
* * * * *
7362254 GTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATTTGTATCTGGTGACTCTA
1 GTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTAGTGACTCTA
*
7362318 TCAC-ATTATCTG
64 CCACGATTATCTG
7362330 TTCTGGCAGC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 51 0.77
82 15 0.23
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (81 bp):
GTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTAGTGACTCTACC
ACGATTATCTGATATG
Found at i:7363489 original size:15 final size:15
Alignment explanation
Indices: 7363452--7363490 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
7363442 AACAAAGATC
*
7363452 TCCAAGAGAAAGAAA
1 TCCAAGATAAAGAAA
*
7363467 TCCAAGATAAGGAAA
1 TCCAAGATAAAGAAA
7363482 TCCAAGATA
1 TCCAAGATA
7363491 CAATATCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.54, C:0.15, G:0.18, T:0.13
Consensus pattern (15 bp):
TCCAAGATAAAGAAA
Found at i:7366767 original size:16 final size:16
Alignment explanation
Indices: 7366748--7366779 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7366738 AATTATTTTA
7366748 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
7366764 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
7366780 ACTCTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:7367245 original size:151 final size:151
Alignment explanation
Indices: 7366982--7367317 Score: 494
Period size: 151 Copynumber: 2.2 Consensus size: 151
7366972 GAAGCTCTCT
* *
7366982 GGTACGCATAGTAGCCGGCACTTAGTACTATACATGCGACCTATCAATCTAGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* * *
7367047 ATGCACTTAGTACTACACACATGATTTAACCATCTTATACACGTAGTAGCCTACGCTTAGTACTA
66 ATGCACGTAGTACTACACACATGACTTAACCATCTTATACACGTAGTAGCCTACACTTAGTACTA
* *
7367112 CAGAAGTGATCGAAGTTAACG
131 CACAAGTGATCGAAGTTAAAG
* * * * *
7367133 GGTACGCATGGTAGCCTACACTTAGTACTACACATGCGACCTATCAATTTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* * * **
7367198 CTGCACGTAGTACTGCATATGTGACTTAACCAT-TTGATACACGTAGTAGCCTACACTTAGTACT
66 ATGCACGTAGTACTACACACATGACTTAACCATCTT-ATACACGTAGTAGCCTACACTTAGTACT
*
7367262 ACACATGTGATCGAAGTTAAAG
130 ACACAAGTGATCGAAGTTAAAG
7367284 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
7367318 CGTGACTCAC
Statistics
Matches: 164, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
150 2 0.01
151 162 0.99
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
ATGCACGTAGTACTACACACATGACTTAACCATCTTATACACGTAGTAGCCTACACTTAGTACTA
CACAAGTGATCGAAGTTAAAG
Found at i:7367270 original size:50 final size:50
Alignment explanation
Indices: 7366990--7367271 Score: 185
Period size: 50 Copynumber: 5.6 Consensus size: 50
7366980 CTGGTACGCA
** * * * * *
7366990 TAGTAGCCGGCACTTAGTACTATACATGCGACCTATCAATCT-AGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATTTGA-TACACG
* * ** * *
7367040 TAGTAGCATGCACTTAGTACTACACACATGATTTAACCATCTT-ATACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAAT-TTGATACACG
* * * * * ** * * *
7367090 TAGTAGCCTACGCTTAGTACTACAGAAGTGA-TCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACATGTGACT-TAA--CAATTTGATACACG
* * * * * *
7367141 TGGTAGCCTACACTTAGTACTACACATGCGACCTATCAATTTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATTTGATACACG
* * * * *
7367191 TAGTAGCCTGCACGTAGTACTGCATATGTGACTTAACCATTTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATTTGATACACG
7367241 TAGTAGCCTACACTTAGTACTACACATGTGA
1 TAGTAGCCTACACTTAGTACTACACATGTGA
7367272 TCGAAGTTAA
Statistics
Matches: 171, Mismatches: 54, Indels: 14
0.72 0.23 0.06
Matches are distributed among these distances:
49 3 0.02
50 134 0.78
51 33 0.19
52 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGTGACTTAACAATTTGATACACG
Found at i:7367306 original size:51 final size:49
Alignment explanation
Indices: 7367084--7367323 Score: 165
Period size: 50 Copynumber: 4.8 Consensus size: 49
7367074 AACCATCTTA
* * * * * *
7367084 TACACGTAGTAGCCTACGCTTAGTACTACAGAAGTGATCGAAGTTAACGGG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGA-CGAA-TCAATGGG
* * * ** *
7367135 TACGCATGGTAGCCTACACTTAGTACTACACATGCGACCTATCAATTTGG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGACGAATCAA-TGGG
** * * * * * * * * *
7367185 TACATGTAGTAGCCTGCACGTAGTACTGCATATGTGACTTAACCATTTGA
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGAC-GAATCAATGGG
* * *
7367235 TACACGTAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTAAAGGG
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGA-CGAA-TCAATGGG
* * *
7367286 TACGCATAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TACACATAGTAGCCTACACTTAGTACTACACATGTGAC
7367324 TCACAATGAA
Statistics
Matches: 143, Mismatches: 42, Indels: 9
0.74 0.22 0.05
Matches are distributed among these distances:
49 3 0.02
50 71 0.50
51 69 0.48
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (49 bp):
TACACATAGTAGCCTACACTTAGTACTACACATGTGACGAATCAATGGG
Found at i:7367688 original size:19 final size:20
Alignment explanation
Indices: 7367660--7367706 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7367650 AAGAACAGGT
7367660 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
7367681 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
7367700 TATATAT
1 TATATAT
7367707 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:7374197 original size:54 final size:53
Alignment explanation
Indices: 7374080--7374269 Score: 195
Period size: 54 Copynumber: 3.5 Consensus size: 53
7374070 CATTGTCATA
*
7374080 TCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATG
1 TCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATG
* * * * *
7374133 CCTTGGCATGGTCTTACATGGGA-CTTTGCCTTATAGTAACTTATCAATGCCATG
1 TCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTCACCAATGCCATG
* *** *
7374187 TCTTAACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTGCCATG
1 TCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATG
* * *
7374242 CCTTGGCATGGTCTTACATGGTATCCTT
1 TCTTGACATGGTCTTACATGGGATCCTT
7374270 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
52 10 0.09
53 24 0.21
54 39 0.35
55 39 0.35
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
TCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATG
Found at i:7377075 original size:55 final size:53
Alignment explanation
Indices: 7376949--7377139 Score: 197
Period size: 55 Copynumber: 3.5 Consensus size: 53
7376939 CATTGTCATA
*
7376949 TCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATG
1 TCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATG
* * * *
7377002 CCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATG
1 TCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATGCCATG
* *** *
7377057 TCTTAACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTGCCATG
1 TCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TGCCATG
* * *
7377112 CCTTGGCATGGTCTTACATGGTATCCTT
1 TCTTGACATGGTCTTACATGGGATCCTT
7377140 AAACCCTAAT
Statistics
Matches: 114, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 8 0.07
55 70 0.61
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
TCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATGCCATG
Found at i:7389753 original size:29 final size:29
Alignment explanation
Indices: 7389708--7389767 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
7389698 AAAGAAAAAA
*
7389708 ATTTCATATCATATTCCCCAAATTTTTCT
1 ATTTCATATCATATTCCCCAAATATTTCT
* *
7389737 ATTTCATATCATCTTCCCTAAATATTTCT
1 ATTTCATATCATATTCCCCAAATATTTCT
7389766 AT
1 AT
7389768 GGAAACCCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.48
Consensus pattern (29 bp):
ATTTCATATCATATTCCCCAAATATTTCT
Found at i:7392383 original size:22 final size:22
Alignment explanation
Indices: 7392358--7392400 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7392348 TCACATGGGG
7392358 TGTTCCATGGGCCACACGGGCA
1 TGTTCCATGGGCCACACGGGCA
*
7392380 TGTTCCATGGGCCATACGGGC
1 TGTTCCATGGGCCACACGGGC
7392401 GTGTGAGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (22 bp):
TGTTCCATGGGCCACACGGGCA
Found at i:7397104 original size:83 final size:83
Alignment explanation
Indices: 7396971--7397125 Score: 197
Period size: 83 Copynumber: 1.9 Consensus size: 83
7396961 TTACCCCTAC
* * * *
7396971 TTTTCAGATTTTACAGTTTTCCCTTATTTTCAATATTTTACAGTTCTTCCCCAATTTTTTAGATT
1 TTTTCAAATATTACAGTTTTCCCTTATTTTCAAGATTTTACAATTCTTCCCCAATTTTTTAGATT
7397036 TCATAATGTTGCCCTTAT
66 TCATAATGTTGCCCTTAT
** **
7397054 TTTTCAAATATTACAGTTTTCCCCCTT-TTTTTTAGATTTTACAATT-TTCCCCTTTTTTTTAGA
1 TTTTCAAATATTACAGTTTT--CCCTTATTTTCAAGATTTTACAATTCTTCCCCAATTTTTTAGA
*
7397117 TTTTATAAT
64 TTTCATAAT
7397126 TTTAACCCAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
83 41 0.67
84 15 0.25
85 5 0.08
ACGTcount: A:0.22, C:0.18, G:0.06, T:0.54
Consensus pattern (83 bp):
TTTTCAAATATTACAGTTTTCCCTTATTTTCAAGATTTTACAATTCTTCCCCAATTTTTTAGATT
TCATAATGTTGCCCTTAT
Found at i:7397107 original size:56 final size:55
Alignment explanation
Indices: 7396936--7397121 Score: 173
Period size: 56 Copynumber: 3.4 Consensus size: 55
7396926 GGCTGTTACA
* * * * * *
7396936 CCCC-TATTTTTTAAGTTTTACAATTTTACCCCTACTTTTCAGATTTTACAGTTTT
1 CCCCTTATTTTTCAAATTTTACAGTTTT-CCCCTATTTTTTAGATTTTACAATTTT
* * * *
7396991 -CCCTTA-TTTTCAATATTTTACAGTTCTTCCCCAATTTTTTAGATTTCATAATGTT
1 CCCCTTATTTTTCAA-ATTTTACAGTT-TTCCCCTATTTTTTAGATTTTACAATTTT
* * *
7397046 GCCCTTATTTTTCAAATATTACAGTTTTCCCCCTTTTTTTTAGATTTTACAATTTT
1 CCCCTTATTTTTCAAATTTTACAGTTTT-CCCCTATTTTTTAGATTTTACAATTTT
* *
7397102 CCCCTT-TTTTTTAGATTTTA
1 CCCCTTATTTTTCAAATTTTA
7397122 TAATTTTAAC
Statistics
Matches: 105, Mismatches: 20, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
54 9 0.09
55 44 0.42
56 45 0.43
57 7 0.07
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.53
Consensus pattern (55 bp):
CCCCTTATTTTTCAAATTTTACAGTTTTCCCCTATTTTTTAGATTTTACAATTTT
Found at i:7397126 original size:27 final size:27
Alignment explanation
Indices: 7396936--7397128 Score: 138
Period size: 28 Copynumber: 7.0 Consensus size: 27
7396926 GGCTGTTACA
*
7396936 CCCCTATTTTTTA-AGTTTTACAATTTT
1 CCCCTTTTTTTTAGA-TTTTACAATTTT
** * *
7396963 ACCCCTACTTTTCAGATTTTACAGTTTT
1 -CCCCTTTTTTTTAGATTTTACAATTTT
** * *
7396991 -CCCTTATTTTCAATATTTTACAGTTCTT
1 CCCCTT-TTTTTTAGATTTTACAATT-TT
** * * *
7397019 CCCCAATTTTTTAGATTTCATAATGTT
1 CCCCTTTTTTTTAGATTTTACAATTTT
* * * * *
7397046 GCCCTTATTTTTCAAATATTACAGTTTT
1 CCCCTT-TTTTTTAGATTTTACAATTTT
7397074 CCCCCTTTTTTTTAGATTTTACAATTTT
1 -CCCCTTTTTTTTAGATTTTACAATTTT
*
7397102 CCCCTTTTTTTTAGATTTTATAATTTT
1 CCCCTTTTTTTTAGATTTTACAATTTT
7397129 AACCCAAAAT
Statistics
Matches: 126, Mismatches: 33, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
26 4 0.03
27 46 0.37
28 67 0.53
29 9 0.07
ACGTcount: A:0.22, C:0.20, G:0.05, T:0.53
Consensus pattern (27 bp):
CCCCTTTTTTTTAGATTTTACAATTTT
Found at i:7397999 original size:15 final size:15
Alignment explanation
Indices: 7397961--7397992 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7397951 AAACTCCTAT
7397961 CGAAATAGGTCATTC
1 CGAAATAGGTCATTC
7397976 CGAAATAGGTCATTC
1 CGAAATAGGTCATTC
7397991 CG
1 CG
7397993 GGTTAGGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (15 bp):
CGAAATAGGTCATTC
Found at i:7398289 original size:42 final size:42
Alignment explanation
Indices: 7398249--7398522 Score: 327
Period size: 43 Copynumber: 6.5 Consensus size: 42
7398239 AAAAAACACT
* * * * * *
7398249 GCTATAGAACATGACCTTTAGTGGCACTTTACCACAAACACT
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCCACAAACGCC
* *
7398291 GCTAAAGAACATGAACTTTAGCGGCGCTTTTCCTACAAACACC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCC-ACAAACGCC
*
7398334 GCTAAAGAACATAACCTTTAGCGGCGCTTTTCCTACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCC-ACAAACGCC
*
7398377 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAATGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTT-CCACAAACGCC
* * ** * *
7398420 ACTATAGAGTA-GACCTTTAGTGGCGCTTTTGCACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCCACAAACGCC
* * *
7398461 ACTATAGAACA-GACCTTTAGCGGTGCTTTTCTCACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTTC-CACAAACGCC
7398503 GCTAAAGAACATGACCTTTA
1 GCTAAAGAACATGACCTTTA
7398523 AAAAAATATT
Statistics
Matches: 203, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
41 35 0.17
42 65 0.32
43 101 0.50
44 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
GCTAAAGAACATGACCTTTAGCGGCGCTTTTCCACAAACGCC
Found at i:7403538 original size:7 final size:7
Alignment explanation
Indices: 7403526--7403723 Score: 73
Period size: 7 Copynumber: 27.9 Consensus size: 7
7403516 ACTAATTAAT
7403526 CTAAACC
1 CTAAACC
7403533 CTAAACCC
1 CTAAA-CC
*
7403541 CT-AGCC
1 CTAAACC
*
7403547 CTTATACC
1 C-TAAACC
*
7403555 CTAACCC
1 CTAAACC
*
7403562 CTAAATC
1 CTAAACC
* *
7403569 ATAAAAC
1 CTAAACC
*
7403576 AT-AACC
1 CTAAACC
7403582 CTTAAACC
1 C-TAAACC
*
7403590 CTAAACT
1 CTAAACC
*
7403597 CTTAACC
1 CTAAACC
*
7403604 CTTAACCC
1 C-TAAACC
*
7403612 CTAACCC
1 CTAAACC
7403619 CTAAACC
1 CTAAACC
*
7403626 TTAAACC
1 CTAAACC
*
7403633 C-CAACC
1 CTAAACC
*
7403639 CTTAAACT
1 C-TAAACC
*
7403647 ATAAACC
1 CTAAACC
*
7403654 ATAAACC
1 CTAAACC
* *
7403661 ATAATCC
1 CTAAACC
*
7403668 ATAAACC
1 CTAAACC
*
7403675 TTAAA--
1 CTAAACC
*
7403680 ATAGTAACTC
1 CTA--AAC-C
*
7403690 CTAAACA
1 CTAAACC
*
7403697 TTAAACC
1 CTAAACC
7403704 CTAAACC
1 CTAAACC
*
7403711 GTAAACC
1 CTAAACC
7403718 CTAAAC
1 CTAAAC
7403724 TATAATGATA
Statistics
Matches: 143, Mismatches: 35, Indels: 26
0.70 0.17 0.13
Matches are distributed among these distances:
5 2 0.01
6 11 0.08
7 105 0.73
8 23 0.16
10 2 0.01
ACGTcount: A:0.42, C:0.35, G:0.02, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:7403639 original size:57 final size:57
Alignment explanation
Indices: 7403527--7403645 Score: 150
Period size: 57 Copynumber: 2.1 Consensus size: 57
7403517 CTAATTAATC
* * *
7403527 TAAACCCTAAACCCCTAGCCCTTATACCCTAACCCCTAAATCATAAAACATAACCCT
1 TAAACCCTAAACCCCTAACCCTTATACCCTAACCCCTAAACCATAAAACACAACCCT
* * * * *
7403584 TAAACCCTAAACTCTTAACCCTTA-ACCCCTAACCCCTAAACCTTAAACCCCAACCCT
1 TAAACCCTAAACCCCTAACCCTTATA-CCCTAACCCCTAAACCATAAAACACAACCCT
7403641 TAAAC
1 TAAAC
7403646 TATAAACCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
56 1 0.02
57 52 0.98
ACGTcount: A:0.38, C:0.40, G:0.01, T:0.21
Consensus pattern (57 bp):
TAAACCCTAAACCCCTAACCCTTATACCCTAACCCCTAAACCATAAAACACAACCCT
Found at i:7404225 original size:115 final size:115
Alignment explanation
Indices: 7404035--7404287 Score: 364
Period size: 115 Copynumber: 2.2 Consensus size: 115
7404025 TTTTGCAGCA
* * * ** * *
7404035 TTTTTTATAAAGCGCCGCTAAAGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGTCGCTAATTCC
1 TTTTTTAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGCGCCGCTAATGCC
* *
7404100 ACTGAAGCTCAACATAAAACGGCGGCATCT-TACTGAATTTTTTTGTGGCG
66 ACTAAAGCTCAACATAAAACGACGGCAT-TGTACTGAATTTTTTTGTGGCG
7404150 TTTTTTAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGCGCCGCTAATGCC
1 TTTTTTAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGCGCCGCTAATGCC
* *
7404215 ACTAAAGCTCAACATAAAACGACGGCATTGTGCTTAATTTTTTTGTGGCG
66 ACTAAAGCTCAACATAAAACGACGGCATTGTACTGAATTTTTTTGTGGCG
* * *
7404265 TTTTTCAGAAAGCGCCACTAATG
1 TTTTTTAAAAAGCGCCGCTAATG
7404288 GATGACCTAT
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
114 1 0.01
115 122 0.99
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (115 bp):
TTTTTTAAAAAGCGCCGCTAATGCTCAATCTATAGCAGCAATTTTCAAAAAGCGCCGCTAATGCC
ACTAAAGCTCAACATAAAACGACGGCATTGTACTGAATTTTTTTGTGGCG
Found at i:7404388 original size:40 final size:40
Alignment explanation
Indices: 7404261--7404390 Score: 118
Period size: 40 Copynumber: 3.2 Consensus size: 40
7404251 ATTTTTTTGT
* * * * *
7404261 GGCGTTTTTCAGAAAGCGCCACTAATGGAT-GACCTATAGT
1 GGCGTTTTTCAAAAAGCGCCACTAAT-GCTCAATCTATAGC
* * *
7404301 GGCGGTTTTTTAAAAAGCGCCACTAATTCTCAATCTATAAC
1 GGC-GTTTTTCAAAAAGCGCCACTAATGCTCAATCTATAGC
** * * *
7404342 TACGTTTTTCAAAAATCGTCGCTAATGCTCAATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCAATCTATAGC
7404382 GGCGTTTTT
1 GGCGTTTTT
7404391 TATCCAAACG
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
40 42 0.60
41 28 0.40
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCACTAATGCTCAATCTATAGC
Found at i:7413842 original size:41 final size:41
Alignment explanation
Indices: 7413770--7413850 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
7413760 GTTTACTGAT
* ** ** *
7413770 TAATGTATATCTGATACTGTTACTGTGATGGGCTCAGGCCC
1 TAATGTATATCTAATACTGAAACTGACATGGGCTAAGGCCC
*
7413811 TAATGTATATCTAATACTGAAATTGACATGGGCTAAGGCC
1 TAATGTATATCTAATACTGAAACTGACATGGGCTAAGGCC
7413851 TGAAATGTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (41 bp):
TAATGTATATCTAATACTGAAACTGACATGGGCTAAGGCCC
Found at i:7419052 original size:13 final size:14
Alignment explanation
Indices: 7419024--7419058 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
7419014 CAATACTGCC
7419024 CAAAACAAAAATAAA
1 CAAAA-AAAAATAAA
7419039 CAAAAAAAAA-AAA
1 CAAAAAAAAATAAA
7419052 CAAAAAA
1 CAAAAAA
7419059 TCTAAGTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
14 5 0.25
15 5 0.25
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (14 bp):
CAAAAAAAAATAAA
Found at i:7420276 original size:9 final size:9
Alignment explanation
Indices: 7420235--7420275 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
7420225 GATGATGATG
7420235 ATTATAATT
1 ATTATAATT
*
7420244 ATTATAATA
1 ATTATAATT
*
7420253 ATAATAATT
1 ATTATAATT
*
7420262 ATTATTATT
1 ATTATAATT
7420271 ATTAT
1 ATTAT
7420276 TTTGTTATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
ATTATAATT
Found at i:7423397 original size:9 final size:9
Alignment explanation
Indices: 7423364--7423421 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
7423354 AAAAATTTAG
7423364 ATTATCTGTT
1 ATTAT-TGTT
*
7423374 ATTATTATT
1 ATTATTGTT
*
7423383 AATATTGTT
1 ATTATTGTT
7423392 ATTATTGTT
1 ATTATTGTT
* *
7423401 GTTGTTGTT
1 ATTATTGTT
* *
7423410 GTTGTTGTT
1 ATTATTGTT
7423419 ATT
1 ATT
7423422 GTTATTATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
9 36 0.88
10 5 0.12
ACGTcount: A:0.19, C:0.02, G:0.16, T:0.64
Consensus pattern (9 bp):
ATTATTGTT
Found at i:7423423 original size:9 final size:9
Alignment explanation
Indices: 7423387--7423429 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
7423377 ATTATTAATA
*
7423387 TTGTTATTA
1 TTGTTATTG
*
7423396 TTGTTGTTG
1 TTGTTATTG
*
7423405 TTGTTGTTG
1 TTGTTATTG
7423414 TTGTTATTG
1 TTGTTATTG
*
7423423 TTATTAT
1 TTGTTAT
7423430 ATTATTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.12, C:0.00, G:0.21, T:0.67
Consensus pattern (9 bp):
TTGTTATTG
Found at i:7424736 original size:46 final size:46
Alignment explanation
Indices: 7424683--7424858 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
7424673 TATTTGGGCA
*
7424683 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
7424729 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
** * *
7424774 CATCCGAACTCGTTGAGTTGAGTATGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
7424822 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7424859 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:7424838 original size:93 final size:93
Alignment explanation
Indices: 7424679--7424851 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
7424669 AGGATATTTG
* * *
7424679 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTACGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
7424744 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
7424772 GGCATCCGAACTCGTTGAGTTGAGTATGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTACGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
7424837 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
7424852 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTACGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:7432498 original size:46 final size:46
Alignment explanation
Indices: 7432445--7432612 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
7432435 TATTTGGGCA
* *
7432445 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
* * * * *
7432491 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAA--A--CG
* *
7432538 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
* *
7432584 ACCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
7432613 GCTTTTGGGC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.54
47 29 0.29
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
Found at i:7432600 original size:93 final size:93
Alignment explanation
Indices: 7432441--7432613 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
7432431 AGGATATTTG
* * *
7432441 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGACCGAACTCGTTGAG
*
7432506 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
7432534 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGACCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGACCGAACTCGTTGAG
7432599 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
7432614 CTTTTGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGACCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:7460391 original size:49 final size:49
Alignment explanation
Indices: 7460324--7460558 Score: 272
Period size: 52 Copynumber: 4.7 Consensus size: 49
7460314 CTGGTACGCA
* *
7460324 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
7460373 TAGTAGCCTGCTCTTAGTACTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAG---TACTACACATGTGACCAATTATCCGGTACACG
* * * * *
7460425 TAGTAGCCTACACTTAGTACTACACACGTGACCTAATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGGTACACG
* * * * * *
7460475 TAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCA-A-TTATCCGGTACACG
* *
7460526 TAGTAGCCTGTACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
7460559 TCACAATAGA
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
49 31 0.19
50 45 0.28
51 37 0.23
52 46 0.29
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:7460418 original size:52 final size:49
Alignment explanation
Indices: 7460324--7460551 Score: 276
Period size: 50 Copynumber: 4.5 Consensus size: 49
7460314 CTGGTACGCA
* * *
7460324 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
7460373 TAGTAGCCTGCTCTTAGTACTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTAC-ACAC--GTGACCAATTATCCGGTACACG
* * * *
7460425 TAGTAGCCTACACTTAGTACTACACACGTGACCTAATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
7460475 TAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCA-A-TTATCCGGTACACG
*
7460526 TAGTAGCCTGTACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
7460552 TGCGACCTCA
Statistics
Matches: 155, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
49 28 0.18
50 48 0.31
51 37 0.24
52 42 0.27
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:7460559 original size:101 final size:101
Alignment explanation
Indices: 7460311--7460559 Score: 315
Period size: 101 Copynumber: 2.5 Consensus size: 101
7460301 TAGCCGAAGC
* * * *
7460311 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATCATCCGATACACGTA
*
7460375 GTAGCCTGCTCTTAGTACTACTACACATGTGACCAAT
66 GTAGCCTGCACTTAGTACTACTACACA-GTGACCAAT
* * * * * *
7460412 TATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAATCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATCATCCGATACACGTA
*
7460477 GTAGCCTGCACTTAGTACTAC-ACAC-GTGATCATAGT
66 GTAGCCTGCACTTAGTACTACTACACAGTGACCA-A-T
* * *
7460513 TTTCGGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
7460560 CACAATAGAT
Statistics
Matches: 125, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
99 6 0.05
100 1 0.01
101 83 0.66
102 35 0.28
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (101 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATCATCCGATACACGTA
GTAGCCTGCACTTAGTACTACTACACAGTGACCAAT
Found at i:7486420 original size:40 final size:40
Alignment explanation
Indices: 7486188--7486411 Score: 326
Period size: 40 Copynumber: 5.6 Consensus size: 40
7486178 TGGATGATAA
*
7486188 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
7486229 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
7486269 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
7486309 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
7486349 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
7486389 CCGGGCTATGTCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
7486412 CGAACGAGTA
Statistics
Matches: 169, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
40 141 0.83
41 24 0.14
42 4 0.02
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:7486429 original size:80 final size:79
Alignment explanation
Indices: 7486183--7486446 Score: 293
Period size: 80 Copynumber: 3.3 Consensus size: 79
7486173 ATATTTGGAT
* * * *
7486183 GATAACCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAG
1 GATATCCGGGCTAAGTCCCGAAGGCATTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCTGAAG
* *
7486247 GCATTTGTGCGAGTTAT
63 GCATTTGTGCGAGCTAC
* * *
7486264 TACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGT-CTCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCGGGCTAAGTCCT-GAAGG
7486328 CATTTGTGCGAGCTAC
64 CATTTGTGCGAGCTAC
* *
7486344 TATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCTGAAGGC
1 GATATCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATATCCGGGCTAAGTCCTGAAGGC
* **
7486409 ATTCGAACGAG-TAGC
65 ATTTGTGCGAGCTA-C
* *
7486424 GATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGG
7486447 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
79 20 0.13
80 108 0.68
81 25 0.16
82 6 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
GATATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGTCCTGAAGGCA
TTTGTGCGAGCTAC
Found at i:7486429 original size:120 final size:120
Alignment explanation
Indices: 7486183--7486446 Score: 331
Period size: 120 Copynumber: 2.2 Consensus size: 120
7486173 ATATTTGGAT
*
7486183 GATAACCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGGCATTTTGCGC-AGTGACTAGTTCCGGGCTAAGTCCCGAAGG
* * * **
7486248 CATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTAC
65 CATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGCTAC
* *
7486304 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCG-AGCT-ACTA-TATCCGGGCTAAGTCCCGAA
1 GATATCCGGGCTAAGTCCCGAAGGCATTT-TGCGCAG-TGACTAGT-TCCGGGCTAAGTCCCGAA
* * *
7486366 GGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCTGAAGGCATTCGAACGAG-TAGC
63 GGCATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGCTA-C
* *
7486424 GATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGG
7486447 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
119 16 0.13
120 77 0.62
121 27 0.22
122 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
GATATCCGGGCTAAGTCCCGAAGGCATTTTGCGCAGTGACTAGTTCCGGGCTAAGTCCCGAAGGC
ATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGCTAC
Found at i:7494426 original size:40 final size:40
Alignment explanation
Indices: 7494327--7494625 Score: 372
Period size: 40 Copynumber: 7.5 Consensus size: 40
7494317 TGGATGATAA
**
7494327 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAG-TGACTAGCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGCT-ACTATAT
* * * * *
7494368 TCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
7494408 CCGGGCTAAGTCCTGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
7494448 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
7494488 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
7494528 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * * *
7494568 CTGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATAT
* *
7494608 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
7494626 TACTTGGCTT
Statistics
Matches: 230, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.07
40 188 0.82
41 24 0.10
42 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:7500586 original size:24 final size:25
Alignment explanation
Indices: 7500559--7500612 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
7500549 AAGGCTGTCA
*
7500559 GGAGAAG-ATTT-GAGAGCTGATAAG
1 GGAGAAGAATTTAG-GAGATGATAAG
*
7500583 GGAG-AGAATTTAGGAGATGATTAG
1 GGAGAAGAATTTAGGAGATGATAAG
7500607 GGAGAA
1 GGAGAA
7500613 CGGTGTTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 2 0.08
24 21 0.84
25 2 0.08
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (25 bp):
GGAGAAGAATTTAGGAGATGATAAG
Found at i:7501616 original size:8 final size:8
Alignment explanation
Indices: 7501600--7501638 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
7501590 TAGATTGGTG
7501600 AAAGCCGA
1 AAAGCCGA
*
7501608 AATGCCGA
1 AAAGCCGA
*
7501616 AAAGCTGA
1 AAAGCCGA
*
7501624 AATGCCGA
1 AAAGCCGA
7501632 AAAGCCG
1 AAAGCCG
7501639 GTATTTTGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.44, C:0.23, G:0.26, T:0.08
Consensus pattern (8 bp):
AAAGCCGA
Found at i:7501625 original size:16 final size:16
Alignment explanation
Indices: 7501600--7501638 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7501590 TAGATTGGTG
7501600 AAAGCCGAAATGCCGA
1 AAAGCCGAAATGCCGA
*
7501616 AAAGCTGAAATGCCGA
1 AAAGCCGAAATGCCGA
7501632 AAAGCCG
1 AAAGCCG
7501639 GTATTTTGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.44, C:0.23, G:0.26, T:0.08
Consensus pattern (16 bp):
AAAGCCGAAATGCCGA
Found at i:7502141 original size:54 final size:53
Alignment explanation
Indices: 7502054--7502159 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 53
7502044 GGAAGCGTCC
*
7502054 TGGTGGCTATGCCACAATTATCTGATCTCGTGACACTACCACATATATCTGTTT
1 TGGTGACTATGCCACAATTATCTGATCTCGTGACACTACCACAT-TATCTGTTT
* * * **
7502108 TGGTGACTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTT
1 TGGTGACTATGCCACAATTATCTGATCTCGTGACACTACCACATTATCTGTT
7502160 CTGGCAGCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 8 0.17
54 38 0.83
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
TGGTGACTATGCCACAATTATCTGATCTCGTGACACTACCACATTATCTGTTT
Found at i:7502160 original size:26 final size:26
Alignment explanation
Indices: 7502063--7502163 Score: 121
Period size: 27 Copynumber: 3.8 Consensus size: 26
7502053 CTGGTGGCTA
* *
7502063 TGCCACAATTATCTGATCTCGTGACAC
1 TGCCAC-ATTATCTGTTCTGGTGACAC
* * *
7502090 TACCACATATATCTGTTTTGGTGACTC
1 TGCCACAT-TATCTGTTCTGGTGACAC
7502117 TGCCACAATTATCTGTTCTGGTGACAC
1 TGCCAC-ATTATCTGTTCTGGTGACAC
*
7502144 TGTCACATTATCTGTTCTGG
1 TGCCACATTATCTGTTCTGG
7502164 CAGCCATGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.25
27 45 0.71
28 2 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (26 bp):
TGCCACATTATCTGTTCTGGTGACAC
Found at i:7511319 original size:40 final size:40
Alignment explanation
Indices: 7511087--7511310 Score: 326
Period size: 40 Copynumber: 5.6 Consensus size: 40
7511077 TGGATGATAA
*
7511087 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
7511128 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
7511168 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
7511208 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
7511248 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
7511288 CCGGGCTATGTCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
7511311 CGAACGAGTA
Statistics
Matches: 169, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
40 141 0.83
41 24 0.14
42 4 0.02
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:7511328 original size:80 final size:79
Alignment explanation
Indices: 7511082--7511345 Score: 293
Period size: 80 Copynumber: 3.3 Consensus size: 79
7511072 ATATTTGGAT
* * * *
7511082 GATAACCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAG
1 GATATCCGGGCTAAGTCCCGAAGGCATTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCTGAAG
* *
7511146 GCATTTGTGCGAGTTAT
63 GCATTTGTGCGAGCTAC
* * *
7511163 TACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGT-CTCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCGGGCTAAGTCCT-GAAGG
7511227 CATTTGTGCGAGCTAC
64 CATTTGTGCGAGCTAC
* *
7511243 TATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCTGAAGGC
1 GATATCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATATCCGGGCTAAGTCCTGAAGGC
* **
7511308 ATTCGAACGAG-TAGC
65 ATTTGTGCGAGCTA-C
* *
7511323 GATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGG
7511346 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
79 20 0.13
80 108 0.68
81 25 0.16
82 6 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
GATATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGTCCTGAAGGCA
TTTGTGCGAGCTAC
Found at i:7511328 original size:120 final size:120
Alignment explanation
Indices: 7511082--7511345 Score: 331
Period size: 120 Copynumber: 2.2 Consensus size: 120
7511072 ATATTTGGAT
*
7511082 GATAACCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGGCATTTTGCGC-AGTGACTAGTTCCGGGCTAAGTCCCGAAGG
* * * **
7511147 CATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTAC
65 CATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGCTAC
* *
7511203 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCG-AGCT-ACTA-TATCCGGGCTAAGTCCCGAA
1 GATATCCGGGCTAAGTCCCGAAGGCATTT-TGCGCAG-TGACTAGT-TCCGGGCTAAGTCCCGAA
* * *
7511265 GGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCTGAAGGCATTCGAACGAG-TAGC
63 GGCATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGCTA-C
* *
7511323 GATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGTCCCGAAGG
7511346 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
119 16 0.13
120 77 0.62
121 27 0.22
122 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
GATATCCGGGCTAAGTCCCGAAGGCATTTTGCGCAGTGACTAGTTCCGGGCTAAGTCCCGAAGGC
ATTGGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGCTAC
Found at i:7519329 original size:40 final size:40
Alignment explanation
Indices: 7519230--7519528 Score: 363
Period size: 40 Copynumber: 7.5 Consensus size: 40
7519220 TGGATGATAA
**
7519230 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAG-TGACTAGCT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGCT-ACTATAT
* * * * *
7519271 TCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
7519311 CCGGGCTAAGTCCTGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
*
7519351 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
7519391 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
7519431 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * * *
7519471 CTGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATAT
* *
7519511 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
7519529 TACTTGGCTT
Statistics
Matches: 230, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.07
40 188 0.82
41 24 0.10
42 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:7525482 original size:24 final size:25
Alignment explanation
Indices: 7525455--7525508 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
7525445 AAGGCTGTCA
*
7525455 GGAGAAG-ATTT-GAGAGCTGATAAG
1 GGAGAAGAATTTAG-GAGATGATAAG
*
7525479 GGAG-AGAATTTAGGAGATGATTAG
1 GGAGAAGAATTTAGGAGATGATAAG
7525503 GGAGAA
1 GGAGAA
7525509 CGGTGTTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 2 0.08
24 21 0.84
25 2 0.08
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (25 bp):
GGAGAAGAATTTAGGAGATGATAAG
Done.