Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 250 of 332
Found at i:83227911 original size:38 final size:38
Alignment explanation
Indices: 83227831--83227911 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
83227821 CGCGTGATTT
* * **
83227831 AATAAGCATATTATTCATGTTACTATTTTTAGTGATTT
1 AATAAGCATATTATTCATGTTACTATTGTTAGTCATGA
*
83227869 AATAAGCATATTATTCATGTTATTATTGTTA-TACATGA
1 AATAAGCATATTATTCATGTTACTATTGTTAGT-CATGA
83227907 AATAA
1 AATAA
83227912 TTTTGCTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 36 0.97
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (38 bp):
AATAAGCATATTATTCATGTTACTATTGTTAGTCATGA
Found at i:83245005 original size:12 final size:11
Alignment explanation
Indices: 83244984--83245026 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
83244974 TAATGAATCT
83244984 TATGTTTTGGG
1 TATGTTTTGGG
*
83244995 TATGATTTTGGAT
1 TATG-TTTTGG-G
83245008 TATGTTTT-GG
1 TATGTTTTGGG
83245018 TATGTTTTG
1 TATGTTTTG
83245027 ATTTAGATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
10 8 0.30
11 5 0.19
12 10 0.37
13 4 0.15
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.58
Consensus pattern (11 bp):
TATGTTTTGGG
Found at i:83245010 original size:24 final size:22
Alignment explanation
Indices: 83244983--83245026 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
83244973 GTAATGAATC
83244983 TTATGTTTTGGGTATGATTTTGGA
1 TTATGTTTT-GGTATG-TTTTGGA
83245007 TTATGTTTTGGTATGTTTTG
1 TTATGTTTTGGTATGTTTTG
83245027 ATTTAGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 5 0.25
23 6 0.30
24 9 0.45
ACGTcount: A:0.14, C:0.00, G:0.27, T:0.59
Consensus pattern (22 bp):
TTATGTTTTGGTATGTTTTGGA
Found at i:83249700 original size:14 final size:15
Alignment explanation
Indices: 83249677--83249706 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
83249667 AAGAGAATGG
83249677 AAATGAACAGAGGGA
1 AAATGAACAGAGGGA
83249692 AAATG-ACAGAGGGA
1 AAATGAACAGAGGGA
83249706 A
1 A
83249707 TTTACAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.53, C:0.07, G:0.33, T:0.07
Consensus pattern (15 bp):
AAATGAACAGAGGGA
Found at i:83249747 original size:13 final size:13
Alignment explanation
Indices: 83249729--83249753 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83249719 TTAAAGAGAA
83249729 GGGAAATGAACAT
1 GGGAAATGAACAT
83249742 GGGAAATGAACA
1 GGGAAATGAACA
83249754 AGTTTACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.32, T:0.12
Consensus pattern (13 bp):
GGGAAATGAACAT
Found at i:83257300 original size:93 final size:93
Alignment explanation
Indices: 83257173--83257343 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
83257163 CCCATAAGTG
* * * *
83257173 AACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAAT
1 AACTCGGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
83257238 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* *
83257266 AACTCGGACTCAACTCAACAAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 AACTCGGACTCAACTCAACAAGCTT-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
83257330 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
83257344 CAAATATCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACAAGCTTGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:83257336 original size:46 final size:46
Alignment explanation
Indices: 83257164--83257339 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
83257154 TGTAACCCGC
* *
83257164 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * * *
83257210 CCATAAGTGAACTCGAACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
83257260 CTC-TCA---AACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83257303 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83257340 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 15, Indels: 24
0.73 0.11 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
45 1 0.01
46 57 0.55
47 24 0.23
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83259775 original size:30 final size:30
Alignment explanation
Indices: 83259740--83259816 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
83259730 GAAAATCGGG
*
83259740 TAAAGAAATCCAAGATAGAGAAACCCAGAA
1 TAAAGAAATCCAAGATAAAGAAACCCAGAA
* * * *
83259770 TAAAGAAAT-CTAGAATAAAGAGATCCAGGA
1 TAAAGAAATCCAAG-ATAAAGAAACCCAGAA
*
83259800 TAAAGAAACCCAAGATA
1 TAAAGAAATCCAAGATA
83259817 TGATACTATG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 3 0.08
30 32 0.84
31 3 0.08
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (30 bp):
TAAAGAAATCCAAGATAAAGAAACCCAGAA
Found at i:83259776 original size:15 final size:15
Alignment explanation
Indices: 83259740--83259807 Score: 75
Period size: 15 Copynumber: 4.5 Consensus size: 15
83259730 GAAAATCGGG
83259740 TAAAGAAATCCA-AGA
1 TAAAGAAATCCAGA-A
* *
83259755 TAGAGAAACCCAGAA
1 TAAAGAAATCCAGAA
*
83259770 TAAAGAAATCTAGAA
1 TAAAGAAATCCAGAA
* *
83259785 TAAAGAGATCCAGGA
1 TAAAGAAATCCAGAA
83259800 TAAAGAAA
1 TAAAGAAA
83259808 CCCAAGATAT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
15 42 0.98
16 1 0.02
ACGTcount: A:0.57, C:0.12, G:0.18, T:0.13
Consensus pattern (15 bp):
TAAAGAAATCCAGAA
Found at i:83259816 original size:15 final size:15
Alignment explanation
Indices: 83259740--83259816 Score: 59
Period size: 15 Copynumber: 5.1 Consensus size: 15
83259730 GAAAATCGGG
*
83259740 TAAAGAAATCCAAGA
1 TAAAGAAACCCAAGA
*
83259755 TAGAGAAACCC-AGAA
1 TAAAGAAACCCAAG-A
* *
83259770 TAAAGAAA-TCTAGAA
1 TAAAGAAACCCAAG-A
* * *
83259785 TAAAGAGATCCAGGA
1 TAAAGAAACCCAAGA
83259800 TAAAGAAACCCAAGA
1 TAAAGAAACCCAAGA
83259815 TA
1 TA
83259817 TGATACTATG
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 3 0.06
15 43 0.90
16 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
TAAAGAAACCCAAGA
Found at i:83261020 original size:45 final size:45
Alignment explanation
Indices: 83260970--83261059 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
83260960 TTAACATAGA
83260970 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTGTATAT
1 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTGTATAT
83261015 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTGTATAT
1 TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTGTATAT
83261060 CATTAACATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (45 bp):
TAAGTTCATTTCATTATAATCCTTTATCTCATAAAAATTGTATAT
Found at i:83262911 original size:46 final size:44
Alignment explanation
Indices: 83262768--83262911 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
83262758 CCCGCCCATA
* * *
83262768 AGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
83262817 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
83262860 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
83262907 AGTGA
1 AGTGA
83262912 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 27 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:83264698 original size:3 final size:3
Alignment explanation
Indices: 83264684--83264713 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
83264674 TCACATACTA
*
83264684 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
83264714 TTTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:83264843 original size:19 final size:18
Alignment explanation
Indices: 83264806--83264849 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
83264796 ATACATGCAG
83264806 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
83264823 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
83264842 TACTAATT
1 TAATAATT
83264850 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:83267639 original size:60 final size:60
Alignment explanation
Indices: 83267561--83267697 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
83267551 TAGTGTTAAC
* *
83267561 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
83267622 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
83267682 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
83267698 TAACACAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:83267661 original size:28 final size:27
Alignment explanation
Indices: 83267560--83267661 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
83267550 TTAGTGTTAA
* *
83267560 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
83267588 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
83267620 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
83267648 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
83267662 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:83267798 original size:22 final size:21
Alignment explanation
Indices: 83267773--83267813 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
83267763 GATAACCCCA
*
83267773 TCCAACCCTGCACTTGCCTGCG
1 TCCAACCCTACACTT-CCTGCG
*
83267795 TCCATCCCTACACTTCCTG
1 TCCAACCCTACACTTCCTG
83267814 TGGGGAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.15, C:0.46, G:0.12, T:0.27
Consensus pattern (21 bp):
TCCAACCCTACACTTCCTGCG
Found at i:83268923 original size:14 final size:14
Alignment explanation
Indices: 83268898--83268940 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
83268888 GCTATAGGGG
*
83268898 AGAA-AAGAAAAACA
1 AGAAGAAGAAAAA-T
83268912 AGAAGAAGAAAAAT
1 AGAAGAAGAAAAAT
83268926 AGAAGAAGAGAAAAT
1 AGAAGAAGA-AAAAT
83268941 GAAAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.05
Consensus pattern (14 bp):
AGAAGAAGAAAAAT
Found at i:83270045 original size:3 final size:3
Alignment explanation
Indices: 83270037--83270076 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
83270027 CAAACATACT
83270037 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
83270077 TTTAAAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:83270498 original size:37 final size:37
Alignment explanation
Indices: 83270448--83270521 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
83270438 GACTTAAATC
83270448 GAGCTTAAGGAACATTTAACCAATATGCCATCAATGA
1 GAGCTTAAGGAACATTTAACCAATATGCCATCAATGA
83270485 GAGCTTAAGGAACATTTAACCAATATGCCATCAATGA
1 GAGCTTAAGGAACATTTAACCAATATGCCATCAATGA
83270522 CATCACATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (37 bp):
GAGCTTAAGGAACATTTAACCAATATGCCATCAATGA
Found at i:83271185 original size:28 final size:28
Alignment explanation
Indices: 83271149--83271230 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
83271139 GCAATCAAAT
* * * *
83271149 ATGGTACTTTGTGTACGAAATATTTAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
83271177 ATGGCACTTAATGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
83271205 ATGACACTTAGTGTGCAAAATATTGA
1 ATGGCACTTAGTGTGCGAAATATTGA
83271231 ATGATTAAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.33
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:83271347 original size:39 final size:39
Alignment explanation
Indices: 83271303--83271603 Score: 460
Period size: 39 Copynumber: 7.7 Consensus size: 39
83271293 AACTTTATAA
*
83271303 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* ** *
83271342 TGGTGTTATATTCGGGCTAAGTCCTAAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
83271381 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
83271420 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
83271459 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
83271498 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTGGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
83271537 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
83271576 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
83271604 CATGCTTTGT
Statistics
Matches: 241, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 220 0.91
40 21 0.09
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:83275352 original size:46 final size:46
Alignment explanation
Indices: 83275285--83275459 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
83275275 TGTAACCCGC
*
83275285 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
**
83275331 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-AAAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
83275381 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
83275424 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
83275460 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 2 0.02
46 60 0.58
47 26 0.25
48 3 0.03
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:83275401 original size:93 final size:93
Alignment explanation
Indices: 83275293--83275464 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83275283 GCCCATAAGT
* ** *
83275293 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
83275358 CGAGCTCGGATGCCTAGTTAAATCTCAC
66 CGAGCTCGGATGCCTAGTTAAATCTCAC
* *
83275386 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
83275451 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
83275465 CAAATATTCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTAAATCTCAC
Found at i:83282782 original size:28 final size:28
Alignment explanation
Indices: 83282742--83282820 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
83282732 GCAATCAAAT
* * *
83282742 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
83282770 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
83282798 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
83282821 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:83284715 original size:26 final size:26
Alignment explanation
Indices: 83284683--83284739 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
83284673 TCAAAACCCT
83284683 ATGTTGAAAAATATCAATAAACCAAA
1 ATGTTGAAAAATATCAATAAACCAAA
83284709 ATGTTGAAAAATATCAATAAACCAAA
1 ATGTTGAAAAATATCAATAAACCAAA
83284735 ATGTT
1 ATGTT
83284740 CTTTTTAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.54, C:0.11, G:0.09, T:0.26
Consensus pattern (26 bp):
ATGTTGAAAAATATCAATAAACCAAA
Found at i:83291405 original size:40 final size:40
Alignment explanation
Indices: 83291331--83291406 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
83291321 ACTATGTTCT
* * *
83291331 GCACTAAGTATGCGATTTGAAATAGCTTCGGCTATAAATA
1 GCACTAAGTATGCGAATTGAAATAACTTCAGCTATAAATA
* * *
83291371 GCACTGAGTGTGCGAATTGGAATAACTTCAGCTATA
1 GCACTAAGTATGCGAATTGAAATAACTTCAGCTATA
83291407 TGAGGCACTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACTAAGTATGCGAATTGAAATAACTTCAGCTATAAATA
Found at i:83324338 original size:55 final size:54
Alignment explanation
Indices: 83324085--83324338 Score: 222
Period size: 55 Copynumber: 4.8 Consensus size: 54
83324075 ACGCGGGCAC
* * *
83324085 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
83324134 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTTG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * * * *
83324186 CTCACCAA-TGCCATGCCTTGGCATGATTTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * * *
83324241 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAGAC
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGA-AA
* * *
83324295 CTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGCATCCTT
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
83324339 AAACCTAATG
Statistics
Matches: 164, Mismatches: 29, Indels: 18
0.78 0.14 0.09
Matches are distributed among these distances:
49 40 0.24
51 2 0.01
52 38 0.23
53 6 0.04
54 11 0.07
55 65 0.40
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:83331382 original size:55 final size:54
Alignment explanation
Indices: 83331128--83331382 Score: 224
Period size: 55 Copynumber: 4.8 Consensus size: 54
83331118 ACGCGGGTAC
* * *
83331128 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
83331177 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTTTG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC-TTAGAAA
* * * * * *
83331230 CTCACCAA-TGCCATGCCTTGGCATGATTTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * * *
83331285 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAGAC
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGA-AA
* *
83331339 CTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
83331383 AAACCTAATG
Statistics
Matches: 166, Mismatches: 28, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
49 40 0.24
52 2 0.01
53 43 0.26
54 13 0.08
55 66 0.40
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:83337507 original size:16 final size:16
Alignment explanation
Indices: 83337483--83337516 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
83337473 AATATATATT
*
83337483 AAAGTAAAAAAAAAGA
1 AAAGAAAAAAAAAAGA
83337499 AAAGAAAAAAAAAAGA
1 AAAGAAAAAAAAAAGA
83337515 AA
1 AA
83337517 CAGAGAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (16 bp):
AAAGAAAAAAAAAAGA
Found at i:83339384 original size:12 final size:12
Alignment explanation
Indices: 83339358--83339392 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
83339348 GGGGTTTTGG
83339358 GTTTTCTTT-AT
1 GTTTTCTTTCAT
83339369 GTTTTCTTTCAT
1 GTTTTCTTTCAT
83339381 GTTTTCTTTCAT
1 GTTTTCTTTCAT
83339393 AAGTATGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.09, C:0.14, G:0.09, T:0.69
Consensus pattern (12 bp):
GTTTTCTTTCAT
Found at i:83352601 original size:93 final size:93
Alignment explanation
Indices: 83352340--83352605 Score: 347
Period size: 93 Copynumber: 2.9 Consensus size: 93
83352330 CGCCCATAAG
* * * *
83352340 CGAACTCGGACTCAACTCAACGAGGTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTT
1 CGAACTCGGACTCAACTCTACGA-GTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
* *
83352404 AATGAGCTCAGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* * * * *
83352433 CAAACTCAGACTCAACT-TAACGAGTTCAGATGTTCGCATCCATAAGTGGACTCGAACTCAACTC
1 CGAACTCGGACTCAACTCT-ACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
* *
83352497 AACAAGCTCGGATGCCTAGTTATATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* * *
83352526 TGAACTCGGACTCAACTCTACGAGTTCAGACGTTCGTATCCATAAGTAAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCTACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83352591 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
83352606 CAAATATCCG
Statistics
Matches: 147, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
92 3 0.02
93 143 0.97
94 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCTACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:83355052 original size:30 final size:30
Alignment explanation
Indices: 83355008--83355076 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
83354998 TAAAGATAAC
*
83355008 AAGAAAACC-GAATAAAGAAATCCA-AGATA
1 AAGAAACCCAGAATAAAGAAATCCAGA-ATA
*
83355037 GAGAAACCCAGAATAAAGAAATCCAGAATA
1 AAGAAACCCAGAATAAAGAAATCCAGAATA
83355067 AAGAAACCCA
1 AAGAAACCCA
83355077 AGATACGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAGAATA
Found at i:83355056 original size:15 final size:15
Alignment explanation
Indices: 83355008--83355076 Score: 79
Period size: 15 Copynumber: 4.7 Consensus size: 15
83354998 TAAAGATAAC
*
83355008 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
83355022 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
83355037 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
83355052 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
83355067 AAGAAACCCA
1 AAGAAACCCA
83355077 AGATACGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
14 9 0.20
15 36 0.78
16 1 0.02
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:83359349 original size:19 final size:19
Alignment explanation
Indices: 83359320--83359364 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
83359310 AAACCTTGAA
83359320 TTTTCCCTTTCTTT-TTTC
1 TTTTCCCTTTCTTTCTTTC
83359338 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTCTTTCTTTC
83359358 -TTTCCCT
1 TTTTCCCT
83359365 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 13 0.52
20 4 0.16
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTCCCTTTCTTTCTTTC
Found at i:83359598 original size:20 final size:20
Alignment explanation
Indices: 83359575--83359614 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
83359565 TATAATTATT
83359575 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATCTTTTA
83359595 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATCTTTTA
83359615 ATACTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTAATAAATATCTTTTA
Found at i:83360420 original size:92 final size:93
Alignment explanation
Indices: 83360293--83360557 Score: 390
Period size: 92 Copynumber: 2.9 Consensus size: 93
83360283 AACCCAAAAG
* *
83360293 CAAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTT
1 CAAACTCGGACTCAACTCAACGAGTTCGGA-CGTTCGCATCCATAAGTGAACTCGAACTCAACTT
* *
83360357 AACGAGCTCGGATGTCTATTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* * * * *
83360386 CGAA-TCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGGACTCGAACTCCACTTC
1 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTTA
*
83360450 ACAAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
83360478 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAAACTCAACTCA
1 CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTTA
*
83360543 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
83360558 CAAATATCCG
Statistics
Matches: 151, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
92 79 0.52
93 72 0.48
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
CAAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTTA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:83363024 original size:30 final size:30
Alignment explanation
Indices: 83362989--83363047 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
83362979 AAGAAAACCG
*
83362989 AATAAAAAAATCTAAG-ATAGAGAAACCCAC
1 AATAAAAAAATC-AAGAATAAAGAAACCCAC
* *
83363019 AATAAAGAAATCCAGAATAAAGAAACCCA
1 AATAAAAAAATCAAGAATAAAGAAACCCA
83363048 AGATACGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.61, C:0.17, G:0.10, T:0.12
Consensus pattern (30 bp):
AATAAAAAAATCAAGAATAAAGAAACCCAC
Found at i:83363037 original size:15 final size:15
Alignment explanation
Indices: 83362979--83363043 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 15
83362969 TAAAGATAAC
*
83362979 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
* *
83362993 AAAAAATCTA-AGATA
1 AAGAAATCCAGA-ATA
* * *
83363008 GAGAAACCCACAATA
1 AAGAAATCCAGAATA
83363023 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
83363038 AAGAAA
1 AAGAAA
83363044 CCCAAGATAC
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
14 7 0.18
15 30 0.79
16 1 0.03
ACGTcount: A:0.63, C:0.14, G:0.12, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:83366061 original size:93 final size:93
Alignment explanation
Indices: 83365953--83366168 Score: 326
Period size: 93 Copynumber: 2.3 Consensus size: 93
83365943 CGCCCATAAG
* * * *
83365953 CGAACTC-GAACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTTAGACTCAACTC
1 CGAACTCAG-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
*
83366017 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACAAGCTCGGATGCCTAGTTACATCTCA
* * *
83366046 CGAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
83366111 ACAAGCTCGGATGCCTGGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
*
83366139 CAAACTCAGACTCAACTCAACGAGTTCGGA
1 CGAACTCAGACTCAACTCAACGAGTTCGGA
83366169 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
93 110 0.99
94 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:83366064 original size:47 final size:46
Alignment explanation
Indices: 83366000--83366172 Score: 174
Period size: 47 Copynumber: 3.7 Consensus size: 46
83365990 ATCCATAAGT
*
83366000 GAACTTAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCT-GTTACATCTCAC
* * * * *
83366047 GAACTCAGACTCAACTCAACGAGTTC--A-GAC-GTTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTGTT-ACAT-C-TCA-C
* *
83366093 GAACTCGGACTCAACTCAACAAGCTCGGATGCCTGGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCT-GTTACATCTCAC
* *
83366140 AAACTCAGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCC
83366173 CAAATATCTG
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 23 0.23
47 53 0.53
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
GAACTCAGACTCAACTCAACGAGCTCGGATGCCTGTTACATCTCAC
Found at i:83366110 original size:46 final size:46
Alignment explanation
Indices: 83365946--83366118 Score: 140
Period size: 46 Copynumber: 3.7 Consensus size: 46
83365936 TGTAACCCGC
* * * *
83365946 CCATAAGCGAACTC-GAACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCAG-ACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * *
83365992 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC--A-GAC--GTTCGCAT
* *
83366042 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * *
83366085 CCATAAGTGAACTCGGACTCAACTCAACAAGCTC
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC
83366119 GGATGCCTGG
Statistics
Matches: 99, Mismatches: 18, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 52 0.53
47 25 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGACGTTCGCAT
Found at i:83367737 original size:13 final size:13
Alignment explanation
Indices: 83367719--83367743 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83367709 TTAAAGAGAA
83367719 GGGAAATGAACAT
1 GGGAAATGAACAT
83367732 GGGAAATGAACA
1 GGGAAATGAACA
83367744 AGTTTACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.32, T:0.12
Consensus pattern (13 bp):
GGGAAATGAACAT
Found at i:83378380 original size:21 final size:20
Alignment explanation
Indices: 83378342--83378380 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
83378332 CCCCTGTTTC
* *
83378342 AATTTTAGAAAATCATTAAA
1 AATTTTAAAAAATAATTAAA
83378362 AATTTTATAAAAATAATTA
1 AATTTTA-AAAAATAATTA
83378381 TGGGTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (20 bp):
AATTTTAAAAAATAATTAAA
Found at i:83381435 original size:30 final size:30
Alignment explanation
Indices: 83381401--83381457 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
83381391 TTTACAAGCC
* *
83381401 TAAGGGCAAAAGTGTGATTTTGACAAAGAT
1 TAAGGGCAAAAATGTAATTTTGACAAAGAT
*
83381431 TAAGGGCAAAAATGTAATTTTGCCAAA
1 TAAGGGCAAAAATGTAATTTTGACAAA
83381458 AAATGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (30 bp):
TAAGGGCAAAAATGTAATTTTGACAAAGAT
Found at i:83381655 original size:38 final size:38
Alignment explanation
Indices: 83381613--83381688 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
83381603 GTAAGTTCGC
83381613 GTGATTTAATAAGCATATTATTCATGTTATTATTGTTA
1 GTGATTTAATAAGCATATTATTCATGTTATTATTGTTA
*
83381651 GTGATTTAATACGCATATTATTCATGTTATTATTGTTA
1 GTGATTTAATAAGCATATTATTCATGTTATTATTGTTA
83381689 TTATGAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (38 bp):
GTGATTTAATAAGCATATTATTCATGTTATTATTGTTA
Found at i:83385912 original size:15 final size:13
Alignment explanation
Indices: 83385883--83385922 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
83385873 TTTACTAACC
83385883 TTATTTTATTTTT
1 TTATTTTATTTTT
83385896 TTATTTTAATGTTTT
1 TTATTTT-AT-TTTT
83385911 TTA-TTTATTTTT
1 TTATTTTATTTTT
83385923 CTAACAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.16
13 9 0.36
14 5 0.20
15 7 0.28
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTT
Found at i:83387779 original size:37 final size:37
Alignment explanation
Indices: 83387729--83387801 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
83387719 TGCACAGTCT
*
83387729 GATTAATCTCTATTTAAATATAAATATTATAATTTTG
1 GATTAACCTCTATTTAAATATAAATATTATAATTTTG
*
83387766 GATTAACCTCTATTTAAATTTAAATATTATAATTTT
1 GATTAACCTCTATTTAAATATAAATATTATAATTTT
83387802 TAGTGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (37 bp):
GATTAACCTCTATTTAAATATAAATATTATAATTTTG
Found at i:83388174 original size:39 final size:36
Alignment explanation
Indices: 83388078--83388174 Score: 108
Period size: 39 Copynumber: 2.6 Consensus size: 36
83388068 TAATTATTCA
*
83388078 AAAAT-AATATTATTTTAATAGATTTAATATTAAATT
1 AAAATAAATATTATCTTAATAGATTT-ATATTAAATT
83388114 AAAATAAATACTTATCTTAATAGTATTT-TATTAAATT
1 AAAATAAATA-TTATCTTAATAG-ATTTATATTAAATT
*
83388151 AATATTAAAATGATTATCTTAATA
1 AA-AAT-AAAT-ATTATCTTAATA
83388175 TTTAATTTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
36 5 0.09
37 15 0.28
38 13 0.25
39 19 0.36
40 1 0.02
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (36 bp):
AAAATAAATATTATCTTAATAGATTTATATTAAATT
Found at i:83388992 original size:20 final size:21
Alignment explanation
Indices: 83388954--83388994 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
83388944 ATAAATCATT
83388954 TAAATATAAATTAAATTTTAA
1 TAAATATAAATTAAATTTTAA
* *
83388975 TAAA-ATAAATTTACTTTTAA
1 TAAATATAAATTAAATTTTAA
83388995 CTTTTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAATATAAATTAAATTTTAA
Found at i:83396095 original size:18 final size:18
Alignment explanation
Indices: 83396061--83396095 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83396051 AAATAAACAC
**
83396061 ATAACTATTCATTTAATT
1 ATAACTATTCAAATAATT
83396079 ATAACTATTCAAATAAT
1 ATAACTATTCAAATAAT
83396096 ATTATTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAACTATTCAAATAATT
Found at i:83397937 original size:19 final size:21
Alignment explanation
Indices: 83397913--83397955 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
83397903 CCAAAGATTA
*
83397913 TTTATTTTTC-TAAAA-TATT
1 TTTATTTTTCGGAAAATTATT
83397932 TTTATTTTTCGGAAAATTATT
1 TTTATTTTTCGGAAAATTATT
83397953 TTT
1 TTT
83397956 TGATTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
20 4 0.19
21 7 0.33
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTATTTTTCGGAAAATTATT
Found at i:83398813 original size:9 final size:9
Alignment explanation
Indices: 83398771--83398844 Score: 62
Period size: 10 Copynumber: 7.9 Consensus size: 9
83398761 TAAAAAATAT
83398771 ATTTTTATAA
1 ATTTTTAT-A
*
83398781 ATTATTATA
1 ATTTTTATA
*
83398790 ATTATTTAAA
1 ATT-TTTATA
83398800 TATTTTTATA
1 -ATTTTTATA
83398810 A-TTTTATGA
1 ATTTTTAT-A
*
83398819 GTTTTTA-A
1 ATTTTTATA
83398827 ATTCTTTATA
1 ATT-TTTATA
83398837 ATTTTTAT
1 ATTTTTAT
83398845 TTTTAAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
8 9 0.17
9 15 0.29
10 25 0.48
11 3 0.06
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:83402565 original size:105 final size:107
Alignment explanation
Indices: 83402277--83402567 Score: 336
Period size: 105 Copynumber: 2.7 Consensus size: 107
83402267 TTCAAACAAT
* * * *
83402277 AGAGTTTATGAAATTTTAAATAAACCAAACAAAACCAATCACTCATTTACAACTTTTTAGTCTTG
1 AGAGTTCACGAAATTTTAAATAAACCAAACAAAACCAATCACTTATTTACAAC-TTTTAGTCTTC
* * * * *
83402342 CTTTCAGAATATATCAAACCATGGAGTCAGCAATTGCAATGTC
65 CTTTCAGAATGTATCAAACCATGGAATCAGCAAATACAATATC
* * * * *
83402385 AGAGTTGATGAAATTTTAAATAAACCAAACAAAACCAACCACTTATTTACTAC-ATTAGTCTTCC
1 AGAGTTCACGAAATTTTAAATAAACCAAACAAAACCAATCACTTATTTACAACTTTTAGTCTTCC
* * * *
83402449 ATCCAGTATGTATC-AACCATGGAATCAGCAAATACAATATT
66 TTTCAGAATGTATCAAACCATGGAATCAGCAAATACAATATC
* * * * *
83402490 ATAGTTCACGAAATTTTAAATAAACCAAGC-AAACCCATCACTTATTCACAACTTTTAGTCTTTC
1 AGAGTTCACGAAATTTTAAATAAACCAAACAAAACCAATCACTTATTTACAACTTTTAGTCTTCC
*
83402554 TTTCGGAATGTATC
66 TTTCAGAATGTATC
83402568 GGCCATGTAG
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
104 18 0.12
105 67 0.44
106 19 0.12
108 49 0.32
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (107 bp):
AGAGTTCACGAAATTTTAAATAAACCAAACAAAACCAATCACTTATTTACAACTTTTAGTCTTCC
TTTCAGAATGTATCAAACCATGGAATCAGCAAATACAATATC
Found at i:83415133 original size:21 final size:21
Alignment explanation
Indices: 83415109--83415151 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
83415099 TTGCTTTTTG
*
83415109 CCTTTAAACCTTTGTTTTATA
1 CCTTTAAACCCTTGTTTTATA
83415130 CCTTTAAACCCTTGTTTTATA
1 CCTTTAAACCCTTGTTTTATA
83415151 C
1 C
83415152 TTTTTGATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.49
Consensus pattern (21 bp):
CCTTTAAACCCTTGTTTTATA
Found at i:83418037 original size:366 final size:366
Alignment explanation
Indices: 83417365--83418097 Score: 1466
Period size: 366 Copynumber: 2.0 Consensus size: 366
83417355 TGTAATCAAC
83417365 ACTCTTTATGTCTGATATTTTATTCATGGCTTCAGTTCTGTAACTTACTATTTAGATAGAATGAC
1 ACTCTTTATGTCTGATATTTTATTCATGGCTTCAGTTCTGTAACTTACTATTTAGATAGAATGAC
83417430 TCTTCAATTTCATATGATCTTTAGCTGGACACTAGTTTTCTAATATTTAATACTGTGTTATTTGT
66 TCTTCAATTTCATATGATCTTTAGCTGGACACTAGTTTTCTAATATTTAATACTGTGTTATTTGT
83417495 ATTCAAACCTGTGTCTATGTATCTAAGATTTTCCGAATGATATCTAATACTCATGTTTTGTCCTG
131 ATTCAAACCTGTGTCTATGTATCTAAGATTTTCCGAATGATATCTAATACTCATGTTTTGTCCTG
83417560 TTCAAGCTGCAAAGTATTGGATTAAATGTAATTACTTGGGTAATAATTACATTTTATTGTGATTA
196 TTCAAGCTGCAAAGTATTGGATTAAATGTAATTACTTGGGTAATAATTACATTTTATTGTGATTA
83417625 TAGATTCTAATTCCTTAAGCGTGTTTGGCTTGTCTCGTCGCTTGTTATTACATTGTAATTCTTAT
261 TAGATTCTAATTCCTTAAGCGTGTTTGGCTTGTCTCGTCGCTTGTTATTACATTGTAATTCTTAT
83417690 GTCATATTTGGTAGCATAAATTCTACTTATATAATTATATA
326 GTCATATTTGGTAGCATAAATTCTACTTATATAATTATATA
83417731 ACTCTTTATGTCTGATATTTTATTCATGGCTTCAGTTCTGTAACTTACTATTTAGATAGAATGAC
1 ACTCTTTATGTCTGATATTTTATTCATGGCTTCAGTTCTGTAACTTACTATTTAGATAGAATGAC
83417796 TCTTCAATTTCATATGATCTTTAGCTGGACACTAGTTTTCTAATATTTAATACTGTGTTATTTGT
66 TCTTCAATTTCATATGATCTTTAGCTGGACACTAGTTTTCTAATATTTAATACTGTGTTATTTGT
83417861 ATTCAAACCTGTGTCTATGTATCTAAGATTTTCCGAATGATATCTAATACTCATGTTTTGTCCTG
131 ATTCAAACCTGTGTCTATGTATCTAAGATTTTCCGAATGATATCTAATACTCATGTTTTGTCCTG
83417926 TTCAAGCTGCAAAGTATTGGATTAAATGTAATTACTTGGGTAATAATTACATTTTATTGTGATTA
196 TTCAAGCTGCAAAGTATTGGATTAAATGTAATTACTTGGGTAATAATTACATTTTATTGTGATTA
83417991 TAGATTCTAATTCCTTAAGCGTGTTTGGCTTGTCTCGTCGCTTGTTATTACATTGTAATTCTTAT
261 TAGATTCTAATTCCTTAAGCGTGTTTGGCTTGTCTCGTCGCTTGTTATTACATTGTAATTCTTAT
83418056 GTCATATTTGGTAGCATAAATTCTACTTATATAATTATATA
326 GTCATATTTGGTAGCATAAATTCTACTTATATAATTATATA
83418097 A
1 A
83418098 TTTTAAATTT
Statistics
Matches: 367, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
366 367 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (366 bp):
ACTCTTTATGTCTGATATTTTATTCATGGCTTCAGTTCTGTAACTTACTATTTAGATAGAATGAC
TCTTCAATTTCATATGATCTTTAGCTGGACACTAGTTTTCTAATATTTAATACTGTGTTATTTGT
ATTCAAACCTGTGTCTATGTATCTAAGATTTTCCGAATGATATCTAATACTCATGTTTTGTCCTG
TTCAAGCTGCAAAGTATTGGATTAAATGTAATTACTTGGGTAATAATTACATTTTATTGTGATTA
TAGATTCTAATTCCTTAAGCGTGTTTGGCTTGTCTCGTCGCTTGTTATTACATTGTAATTCTTAT
GTCATATTTGGTAGCATAAATTCTACTTATATAATTATATA
Found at i:83418663 original size:30 final size:30
Alignment explanation
Indices: 83418629--83418689 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
83418619 ATCAACAACT
83418629 AGAATTATATAGTAATATTTTAAGAAACAC
1 AGAATTATATAGTAATATTTTAAGAAACAC
* * *
83418659 AGAATTATATGGTAATATTTTAGGAAGCAC
1 AGAATTATATAGTAATATTTTAAGAAACAC
83418689 A
1 A
83418690 TTTGTTGAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.33
Consensus pattern (30 bp):
AGAATTATATAGTAATATTTTAAGAAACAC
Found at i:83421963 original size:48 final size:48
Alignment explanation
Indices: 83421829--83421967 Score: 197
Period size: 48 Copynumber: 2.9 Consensus size: 48
83421819 GGGGTTACAT
** * *
83421829 TGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCAAGATTTAT
1 TGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGTGAGATTCAC
* *
83421877 TGGGTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGTGAGATTCAC
1 TGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGTGAGATTCAC
** *
83421925 TGAGTTTTCTTCGGGCCATGATATTAGCACTTAGGGTGTGAGA
1 TGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGTGAGA
83421968 CTTTGAAGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.19, C:0.16, G:0.32, T:0.33
Consensus pattern (48 bp):
TGAGTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGTGAGATTCAC
Found at i:83427163 original size:140 final size:140
Alignment explanation
Indices: 83426911--83427343 Score: 704
Period size: 140 Copynumber: 3.1 Consensus size: 140
83426901 CAAAACAGTG
83426911 CTAAGACGACACTTATGGGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAACATACGCTTT
1 CTAAGACGACACTTATGGGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAACATACGCTTT
*
83426976 GGCCAACTCTTTGTATAAAGGTTGGGATATGCATGACTAAGGCAACACTTAAATAAGAGTTGGCT
66 GGCCAACTCTTTGTATAAGGGTTGGGATATGCATGACTAAGGCAACACTTAAATAAGAGTTGGCT
83427041 TTGTCTAGTC
131 TTGTCTAGTC
*
83427051 CTAAGACGACACTTATGGGGCGACACTTTTCTAAGTGTTGGGATAGACTGGCCAACATACGCTTT
1 CTAAGACGACACTTATGGGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAACATACGCTTT
* *
83427116 GGCCAACTCTTTGTATAAGGGTTGGGATATGCATGACTAACGAAACACTTAAATAAGAGTTGGCT
66 GGCCAACTCTTTGTATAAGGGTTGGGATATGCATGACTAAGGCAACACTTAAATAAGAGTTGGCT
83427181 TTGTCTAGTC
131 TTGTCTAGTC
* * * * *
83427191 CTAAGACGACACTTTTAGGGCGACACTTTCCTAAGTGTTGGGATAGAGTTGCGAACATACGCTTT
1 CTAAGACGACACTTATGGGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAACATACGCTTT
* * ** * **
83427256 GGCCAACTCTTTGTATAAGAGTTGGGATATGTATTCCTAAGGCAACGCTTGTATAAGAGTTGGCT
66 GGCCAACTCTTTGTATAAGGGTTGGGATATGCATGACTAAGGCAACACTTAAATAAGAGTTGGC-
*
83427321 TTTGTGTAGTC
130 TTTGTCTAGTC
83427332 CTAAGACGACAC
1 CTAAGACGACAC
83427344 ATTGGGATAG
Statistics
Matches: 272, Mismatches: 20, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
140 250 0.92
141 22 0.08
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (140 bp):
CTAAGACGACACTTATGGGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAACATACGCTTT
GGCCAACTCTTTGTATAAGGGTTGGGATATGCATGACTAAGGCAACACTTAAATAAGAGTTGGCT
TTGTCTAGTC
Found at i:83427402 original size:117 final size:117
Alignment explanation
Indices: 83427228--83427457 Score: 345
Period size: 117 Copynumber: 2.0 Consensus size: 117
83427218 TTCCTAAGTG
* * * * *
83427228 TTGGGATAGAGTTGCGAACATACGCTTTGGCCAACTCTTTGTATAAGAGTTGGGATATGTATTCC
1 TTGGGATAGAGTTGCCAACATACGCTTTGGACAACTCTTTGCATAAGAGTTGAGATATGTATGCC
** ** *
83427293 TAAGGCAACGCTTGTATAAGAGTTGGCTTTTGTGTAGTCCTAAGACGACACA
66 TAAAACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGACACA
*
83427345 TTGGGATAGAGTTGCCAACATACGCTTTGGACAACTCTTTGCGTAAG-GTTTGAGATATGTATGC
1 TTGGGATAGAGTTGCCAACATACGCTTTGGACAACTCTTTGCATAAGAG-TTGAGATATGTATGC
83427409 CTAAAACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGA
65 CTAAAACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGA
83427458 AAATTTTGGG
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
116 1 0.01
117 100 0.99
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (117 bp):
TTGGGATAGAGTTGCCAACATACGCTTTGGACAACTCTTTGCATAAGAGTTGAGATATGTATGCC
TAAAACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGACACA
Found at i:83427555 original size:258 final size:257
Alignment explanation
Indices: 83427087--83427821 Score: 870
Period size: 258 Copynumber: 2.8 Consensus size: 257
83427077 TTTTCTAAGT
* * *
83427087 GTTGGGATAGACTGGCCAACATACGCTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGA
1 GTTGGGATAGACTTGCCAACATACGCTTTGGACAACTCTTTGTATAAGGGTTGGGATATGCATGC
* * *
83427152 CTAACGAAACACTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACGACACTTTTAGGGCGACAC
66 CTAA-GAAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACGACACTTTTGGGGTGACAC
*
83427217 TTTCCTAAGTGTTGGGATAGAGTTGCGAACATACGCTTTGGCCAACTCTTTGTAT-AAGAGTTGG
130 TTTCCTAAGTGTTGGGATAGACTTGCGAACATACGCTTTGGCCAACTCTTTGTATAAAG-GTTGG
* * ** * *
83427281 GATATGTATTCCTAAGGCAACGCTTGTATAAGAGTTGGCTTTTGTGTAGTCCTAAGACGACA-C-
194 G-TATGCATACCTAAGGCAACGCTTAAATAAGAGTTGGC-TTTGTCTAGTCCTAAGACAACATCA
83427344 A
257 A
* ** * * *
83427345 -TTGGGATAGAGTTGCCAACATACGCTTTGGACAACTCTTTGCGTAAGGTTTGAGATATGTATGC
1 GTTGGGATAGACTTGCCAACATACGCTTTGGACAACTCTTTGTATAAGGGTTGGGATATGCATGC
* * *
83427409 CTAAAACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGAAAATTTTGGGGTGACA
66 CTAAGA-AACGCTTAAATAAGAGTTGGC-TTTGTCTAGTCCTAAGACGACACTTTTGGGGTGACA
* *
83427474 CTTTCCTAAGTGTTGGGATAGACTTGTC-AACATACGCTCTAGCCAACTCTTTGTATAAAGGTTG
129 CTTTCCTAAGTGTTGGGATAGACTTG-CGAACATACGCTTTGGCCAACTCTTTGTATAAAGGTTG
*
83427538 AGGTATGCATACCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACAATATTT
193 -GGTATGCATACCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACAACA---
83427603 TCCTAA
254 T-C-AA
* * * * *
83427609 GTGTTGGGACAGACTTGCCGACATACGCTTTAGTCAACTTTTTGTATAAGGGTTGGGATATGCAT
1 --GTTGGGATAGACTTGCCAACATACGCTTTGGACAACTCTTTGTATAAGGGTTGGGATATGCAT
* * * * * * * * * *
83427674 GCTTAAGGTAATGCTTAAATAAGAGTCGGCTTTGTCCA-ACACTATGCCTACACTTTTGGGCTGA
64 GCCTAA-GAAACGCTTAAATAAGAGTTGGCTTTGTCTAGTC-CTAAGACGACACTTTTGGGGTGA
* *
83427738 CACTTTCCTAAGTGTTGGGATAGACTTGCGAACATACACTTTGGCCAACTCTTTGTATAAGGGTT
127 CACTTTCCTAAGTGTTGGGATAGACTTGCGAACATACGCTTTGGCCAACTCTTTGTATAAAGGTT
* *
83427803 GGTATATGCATGCCTAAGG
192 GG-GTATGCATACCTAAGG
83427822 GGTTTAGGAT
Statistics
Matches: 403, Mismatches: 55, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
256 1 0.00
257 98 0.24
258 120 0.30
259 6 0.01
262 1 0.00
264 1 0.00
265 3 0.01
266 98 0.24
267 75 0.19
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (257 bp):
GTTGGGATAGACTTGCCAACATACGCTTTGGACAACTCTTTGTATAAGGGTTGGGATATGCATGC
CTAAGAAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACGACACTTTTGGGGTGACACT
TTCCTAAGTGTTGGGATAGACTTGCGAACATACGCTTTGGCCAACTCTTTGTATAAAGGTTGGGT
ATGCATACCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACAACATCAA
Found at i:83427563 original size:141 final size:139
Alignment explanation
Indices: 83427345--83427603 Score: 367
Period size: 141 Copynumber: 1.8 Consensus size: 139
83427335 AGACGACACA
* * * * * *
83427345 TTGGGATAGAGTTGCCAACATACGCTTTGGACAACTCTTTGCGTAAGGTTTGAGATATGTATGCC
1 TTGGGATAGACTTGCCAACATACGCTCTAGACAACTCTTTGCATAAGGTTTGAGATATGCATACC
83427410 TAAAACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGAAAATTTTGGGGTGACAC
66 TAAAACAACGCTTAAATAAGAGTTGGC-TTTGTCTAGTCCTAAGAC-AAAATTTTGGGGTGACAC
83427475 TTTCCTAAGTG
129 TTTCCTAAGTG
* * * *
83427486 TTGGGATAGACTTGTCAACATACGCTCTAGCCAACTCTTTGTATAAAGG-TTGAGGTATGCATAC
1 TTGGGATAGACTTGCCAACATACGCTCTAGACAACTCTTTGCAT-AAGGTTTGAGATATGCATAC
** *
83427550 CTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACAATATTTT
65 CTAAAACAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACAAAATTTT
83427604 CCTAAGTGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
139 7 0.07
140 18 0.17
141 75 0.72
142 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (139 bp):
TTGGGATAGACTTGCCAACATACGCTCTAGACAACTCTTTGCATAAGGTTTGAGATATGCATACC
TAAAACAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACAAAATTTTGGGGTGACACTT
TCCTAAGTG
Found at i:83427705 original size:126 final size:126
Alignment explanation
Indices: 83427475--83427709 Score: 346
Period size: 126 Copynumber: 1.9 Consensus size: 126
83427465 GGGGTGACAC
* *
83427475 TTTCCTAAGTGTTGGGATAGACTTGTCAACATACGCTCTAGCCAACTCTTTGTATAAAGGTTGAG
1 TTTCCTAAGTGTTGGGACAGACTTGCCAACATACGCTCTAGCCAACTCTTTGTATAAAGGTTGAG
*
83427540 GTATGCATACCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGACAATAT
66 GTATGCATACCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCTAGTCCTAAGACAATAT
* * * * *
83427601 TTTCCTAAGTGTTGGGACAGACTTGCCGACATACGCTTTAGTCAACTTTTTGTATAAGGGTTG-G
1 TTTCCTAAGTGTTGGGACAGACTTGCCAACATACGCTCTAGCCAACTCTTTGTATAAAGGTTGAG
* * * *
83427665 GATATGCATGCTTAAGGTAATGCTTAAATAAGAGTCGGCTTTGTC
66 G-TATGCATACCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC
83427710 CAACACTATG
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
125 2 0.02
126 94 0.98
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (126 bp):
TTTCCTAAGTGTTGGGACAGACTTGCCAACATACGCTCTAGCCAACTCTTTGTATAAAGGTTGAG
GTATGCATACCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCTAGTCCTAAGACAATAT
Found at i:83427856 original size:7 final size:7
Alignment explanation
Indices: 83427832--83427892 Score: 52
Period size: 7 Copynumber: 8.6 Consensus size: 7
83427822 GGTTTAGGAT
83427832 TTTATGG
1 TTTATGG
83427839 TTTTATGG
1 -TTTATGG
*
83427847 TTTATTG
1 TTTATGG
*
83427854 TTTAGGG
1 TTTATGG
*
83427861 TTTAAGG
1 TTTATGG
83427868 TTTA-GTG
1 TTTATG-G
*
83427875 TTTATGA
1 TTTATGG
*
83427882 TTTAGGG
1 TTTATGG
83427889 TTTA
1 TTTA
83427893 AGAATTAGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
6 1 0.02
7 35 0.80
8 8 0.18
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (7 bp):
TTTATGG
Found at i:83427869 original size:21 final size:21
Alignment explanation
Indices: 83427840--83427892 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
83427830 ATTTTATGGT
* * *
83427840 TTTATGGTTTATTGTTTAGGG
1 TTTAAGGTTTAGTGTTTAGGA
*
83427861 TTTAAGGTTTAGTGTTTATGA
1 TTTAAGGTTTAGTGTTTAGGA
*
83427882 TTTAGGGTTTA
1 TTTAAGGTTTA
83427893 AGAATTAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (21 bp):
TTTAAGGTTTAGTGTTTAGGA
Found at i:83427900 original size:14 final size:14
Alignment explanation
Indices: 83427854--83427900 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
83427844 TGGTTTATTG
*
83427854 TTTAGGGTTTAAGG
1 TTTAGGGTTTAAGA
* *
83427868 TTTAGTGTTTATGA
1 TTTAGGGTTTAAGA
83427882 TTTAGGGTTTAAGA
1 TTTAGGGTTTAAGA
*
83427896 ATTAG
1 TTTAG
83427901 CTTTGTCCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTAAGA
Found at i:83427900 original size:28 final size:28
Alignment explanation
Indices: 83427846--83427900 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
83427836 TGGTTTTATG
**
83427846 GTTTATTGTTTAGGGTTTAAGGTTTAGT
1 GTTTATTGTTTAGGGTTTAAGAATTAGT
83427874 GTTTA-TGATTTAGGGTTTAAGAATTAG
1 GTTTATTG-TTTAGGGTTTAAGAATTAG
83427901 CTTTGTCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (28 bp):
GTTTATTGTTTAGGGTTTAAGAATTAGT
Found at i:83435537 original size:13 final size:13
Alignment explanation
Indices: 83435519--83435545 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83435509 TAAATATGCA
83435519 AGTTATTTTTAAG
1 AGTTATTTTTAAG
83435532 AGTTATTTTTAAG
1 AGTTATTTTTAAG
83435545 A
1 A
83435546 TTTACATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTATTTTTAAG
Found at i:83437185 original size:17 final size:17
Alignment explanation
Indices: 83437163--83437195 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
83437153 TATTACCTTA
83437163 TGCTGGTATTTATTCTC
1 TGCTGGTATTTATTCTC
83437180 TGCTGGTATTTATTCT
1 TGCTGGTATTTATTCT
83437196 TTCTTTGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.15, G:0.18, T:0.55
Consensus pattern (17 bp):
TGCTGGTATTTATTCTC
Found at i:83437210 original size:18 final size:18
Alignment explanation
Indices: 83437183--83437217 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
83437173 TATTCTCTGC
*
83437183 TGGTATTTATTCTTTCTT
1 TGGTACTTATTCTTTCTT
83437201 TGGTACTTATTCTTTCT
1 TGGTACTTATTCTTTCT
83437218 CTGATTAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.63
Consensus pattern (18 bp):
TGGTACTTATTCTTTCTT
Found at i:83440802 original size:2 final size:2
Alignment explanation
Indices: 83440795--83440819 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
83440785 TATTATGTAT
83440795 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
83440820 GTTATAGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83441054 original size:72 final size:73
Alignment explanation
Indices: 83440881--83441063 Score: 217
Period size: 75 Copynumber: 2.5 Consensus size: 73
83440871 AATCAAGTCG
* * *
83440881 ACAACTTGTTGACTGTTTCTATTAGGATTTTGTATAATTTTTTGATATTATGGGAATCAAGTTGA
1 ACAACTTGTTGACTGTTTCTATTAGGATTTTGTATAATTTTTTGACATCATGGAAATCAAGTT-A
*
83440946 CAACATGTTT
65 -AACATGTTC
* * * * * * *
83440956 GCAACGTGTTGACTGCTTCTACTAGGATTTTGTATAATTTTTTTACGTCATGTGAAAT-AGGTT-
1 ACAACTTGTTGACTGTTTCTATTAGGATTTTGTATAATTTTTTGACATCATG-GAAATCAAGTTA
83441019 AACATGTTC
65 AACATGTTC
*
83441028 ACAACTTGTTGACTATTTCTATTAGGATTTTGTATA
1 ACAACTTGTTGACTGTTTCTATTAGGATTTTGTATA
83441064 TAAATTACTA
Statistics
Matches: 91, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
72 39 0.43
75 48 0.53
76 4 0.04
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.44
Consensus pattern (73 bp):
ACAACTTGTTGACTGTTTCTATTAGGATTTTGTATAATTTTTTGACATCATGGAAATCAAGTTAA
ACATGTTC
Found at i:83441303 original size:47 final size:47
Alignment explanation
Indices: 83441249--83441343 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
83441239 AGACATGAGA
83441249 CAAAGATCTATCCCAACCTTTTTAAGTTTGTCTTAGACGAGTTTACC
1 CAAAGATCTATCCCAACCTTTTTAAGTTTGTCTTAGACGAGTTTACC
83441296 CAAAGATCTATCCCAACCTTTTTAAGTTTGTCTTAGACGAGTTTACC
1 CAAAGATCTATCCCAACCTTTTTAAGTTTGTCTTAGACGAGTTTACC
83441343 C
1 C
83441344 TAACTTTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (47 bp):
CAAAGATCTATCCCAACCTTTTTAAGTTTGTCTTAGACGAGTTTACC
Found at i:83441621 original size:108 final size:109
Alignment explanation
Indices: 83441302--83441972 Score: 432
Period size: 108 Copynumber: 6.1 Consensus size: 109
83441292 TACCCAAAGA
* ** * * *
83441302 TCTATCCCAACCTTTTTAAGTTTGTCTTAGACGAGTTTA-CCCTAACTTTTTTAAGGTTGCCTTA
1 TCTATCCCAACCTTTTTAAGGTTACCTTAGATGAGTCTATCCCAAACTTTTTTAAGGTTGCCTTA
* *** * * * * * *
83441366 GATGGGTTTATCCCAA-GTTTTTTTAA-GCTGCCTTCGAAAAGG
66 AACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * * * * * *
83441408 TCTATCCCAACCTTTTTAGGGTTA-CTGTAAATGGGTTTATCCC-AACATTTTTAATGTTGTCTT
1 TCTATCCCAACCTTTTTAAGGTTACCT-TAGATGAGTCTATCCCAAACTTTTTTAAGGTTGCCTT
* * * * ** * *
83441471 AAACAGGTCAATCCCGACCTTTTCTAAAATTTTCCTTAGACAAGA
65 AAACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* *
83441516 TCTATCCCAACCTTTTTAAGGTTACCTTAGATGAATCTATCCCAAAC-TTTTTAAGGTTGCATTA
1 TCTATCCCAACCTTTTTAAGGTTACCTTAGATGAGTCTATCCCAAACTTTTTTAAGGTTGCCTTA
* *
83441580 AACAAGTCTATCCCAACCTTTTTTTAAGGTTGCCTTTGACAAGG
66 AACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * * * * * *
83441624 TCTGTCCTAACATTTTTAAAAGGTTGCTTTAGA-CAGGTCTATCCCAACCTTTTTTAAAGGTTGC
1 TCTATCCCAACCTTTTT--AAGGTTACCTTAGATGA-GTCTATCCCAAACTTTTTT-AAGGTTGC
* * * *
83441688 CTTAGACAAGGTCTAT-CCAAACTATTTTAAAAGGTTGCCTTAGATAAGG
62 CTTAAACAA-GTCTATCCCAACCT-TTTTTAAAGGTTGCCTTAGACAAGG
* * ** * * * *
83441737 TCTATCCCACCCTTTTTTTAAAGGTTGCCTTAGACAAGGTTTATACC-AACCTATTTAAGGTTGC
1 TCTATCCCAACC--TTTTT-AAGGTTACCTTAGATGA-GTCTATCCCAAACTTTTTTAAGGTTGC
* * * * * * *
83441801 CTTAGACGATTCTATCCCAATCTTTTTTAAAAGTCGCCTTAGATAAGG
62 CTTAAACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* ** * * * * * *
83441849 TTTATCGTAACTTTTTTTAAATGTTGCCTTCGATAAGGTCTATCCC-AACTTTTTTAAAAGGTTA
1 TCTATCCCAAC-CTTTTT-AAGGTTACCTTAGATGA-GTCTATCCCAAACTTTTTT--AAGGTTG
* * ** *
83441913 TCTTAGACTGGTCTATCCCAACC-TTTTT-AAGGTTGTCTTAGAC-AGG
61 CCTTAAACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
83441959 TCTATCCCAACCTT
1 TCTATCCCAACCTT
83441973 GTTCAAAGGT
Statistics
Matches: 445, Mismatches: 100, Indels: 37
0.76 0.17 0.06
Matches are distributed among these distances:
105 2 0.00
106 58 0.13
107 10 0.02
108 107 0.24
109 8 0.02
110 34 0.08
111 51 0.11
112 60 0.13
113 81 0.18
114 20 0.04
115 14 0.03
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (109 bp):
TCTATCCCAACCTTTTTAAGGTTACCTTAGATGAGTCTATCCCAAACTTTTTTAAGGTTGCCTTA
AACAAGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
Found at i:83441649 original size:38 final size:38
Alignment explanation
Indices: 83441445--83442016 Score: 436
Period size: 38 Copynumber: 15.4 Consensus size: 38
83441435 TAAATGGGTT
* * * *
83441445 TATCCCAACATTTTT--AATGTTGTCTTAAAC-AGGTC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * * * * *
83441480 AATCCCGACCTTTTCTAAAA-TTTTCCTTAGACAAGATC
1 TATCCC-AACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * *
83441518 TATCCCAACCTTTTT--AAGGTTACCTTAGATGAA--TC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGA-CAAGGTC
* *
83441553 TATCCCAAAC-TTTTT--AAGGTTGCATTAAACAA-GTC
1 TATCCC-AACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* *
83441588 TATCCCAACCTTTTTT-TAAGGTTGCCTTTGACAAGGTC
1 TATCCCAA-CTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * * *
83441626 TGTCCTAACATTTTTAAAAGGTTGCTTTAGAC-AGGTC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
83441663 TATCCCAACCTTTTTT-AAAGGTTGCCTTAGACAAGGTC
1 TATCCCAA-CTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * *
83441701 TATCCAAACTATTTTAAAAGGTTGCCTTAGATAAGGTC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * *
83441739 TATCCCACCCTTTTTTTAAAGGTTGCCTTAGACAAGGTT
1 TATCCCA-ACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * * * *
83441778 TATACCAACCTATTT--AAGGTTGCCTTAGACGA-TTC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * *
83441813 TATCCCAATCTTTTTTAAAA-GTCGCCTTAGATAAGGTT
1 TATCCCAA-CTTTTTTAAAAGGTTGCCTTAGACAAGGTC
** * * * *
83441851 TATCGTAACTTTTTTTAAATGTTGCCTTCGATAAGGTC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
** *
83441889 TATCCCAACTTTTTTAAAAGGTTATCTTAGAC-TGGTC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* *
83441926 TATCCCAACCTTTTT--AAGGTTGTCTTAGAC-AGGTC
1 TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
* * * * *
83441961 TATCCCAACCTTGTTCAAAGGTGGGCCTT-GACTAGGTC
1 TATCCCAACTTTTTTAAAAGGT-TGCCTTAGACAAGGTC
83441999 TATCCCAACCTTTTTTAA
1 TATCCCAA-CTTTTTTAA
83442017 TGGTCGGCAT
Statistics
Matches: 429, Mismatches: 81, Indels: 50
0.77 0.14 0.09
Matches are distributed among these distances:
34 4 0.01
35 80 0.19
36 44 0.10
37 115 0.27
38 148 0.34
39 38 0.09
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.37
Consensus pattern (38 bp):
TATCCCAACTTTTTTAAAAGGTTGCCTTAGACAAGGTC
Found at i:83441668 original size:75 final size:74
Alignment explanation
Indices: 83441302--83442013 Score: 491
Period size: 73 Copynumber: 9.7 Consensus size: 74
83441292 TACCCAAAGA
* * * * * *
83441302 TCTATCCCAACC-TTTTT-AAGTTTGTCTTAGACGA-GTTTACCCTAA-CTTTTTTAAGGTTGCC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAAGGTTGCC
**
83441363 TTAGATGGG
66 TTAGACAGG
* * * * * * * * *
83441372 TTTATCCCAA-GTTTTTTTAA-GCTGCCTTCGAAAAGGTCTATCCCAACCTTTTT-AGGGTT-AC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAAGGTTGCC
* **
83441433 TGTAAATGGG
66 T-TAGACAGG
* * * * * * ** ** *
83441443 TTTATCCCAA-CATTTTT-AATGTTGTCTTAAAC-AGGTCAATCCCGACCTTTTCTAAAATTTTC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTT-TAAAGGTTGC
*
83441505 CTTAGACAAGA
65 CTTAGAC-AGG
* * * *
83441516 TCTATCCCAACC-TTTTT-AAGGTTACCTTAGATGAA--TCTATCCCAAACTTTTT-AAGGTTGC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA-CAAGGTCTATCCTAACCTTTTTAAAGGTTGC
* * *
83441576 ATTAAACAAG
65 CTTAGACAGG
* * * *
83441586 TCTATCCCAACCTTTTTTTAAGGTTGCCTTTGACAAGGTCTGTCCTAACATTTTTAAAAGGTTGC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTT-AAAGGTTGC
*
83441651 TTTAGACAGG
65 CTTAGACAGG
*
83441661 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCC-AAACTATTTTAAAAGGTTG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAACCT-TTTT-AAAGGTTG
*
83441725 CCTTAGATAAGG
64 CCTTAGA-CAGG
* * *
83441737 TCTATCCCACCCTTTTTTTAAAGGTTGCCTTAGACAAGGTTTATACC-AACCTATTT-AAGGTTG
1 TCTATCCCAACC-TTTTTTAAAGGTTGCCTTAGACAAGGTCTAT-CCTAACCTTTTTAAAGGTTG
*
83441800 CCTTAGAC-GAT
64 CCTTAGACAG-G
* * * * * * * *
83441811 TCTATCCCAATCTTTTTTAAAAGTCGCCTTAGATAAGGTTTATCGTAACTTTTTTTAAATGTTGC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAAC-CTTTTTAAAGGTTGC
* *
83441876 CTTCGATAAGG
65 CTTAGA-CAGG
** * * *
83441887 TCTATCCCAA-CTTTTTTAAAAGGTTATCTTAGAC-TGGTCTATCCCAACCTTTTT-AAGGTTGT
1 TCTATCCCAACCTTTTTT-AAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAAGGTTGC
83441949 CTTAGACAGG
65 CTTAGACAGG
* * * * *
83441959 TCTATCCCAACCTTGTTCAAAGGTGGGCCTT-GACTAGGTCTATCCCAACCTTTTT
1 TCTATCCCAACCTTTTTTAAAGGT-TGCCTTAGACAAGGTCTATCCTAACCTTTTT
83442014 TAATGGTCGG
Statistics
Matches: 507, Mismatches: 102, Indels: 63
0.75 0.15 0.09
Matches are distributed among these distances:
70 56 0.11
71 62 0.12
72 48 0.09
73 123 0.24
74 23 0.05
75 120 0.24
76 35 0.07
77 34 0.07
78 6 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (74 bp):
TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTCTATCCTAACCTTTTTAAAGGTTGCC
TTAGACAGG
Found at i:83441970 original size:35 final size:35
Alignment explanation
Indices: 83441302--83442013 Score: 441
Period size: 35 Copynumber: 19.5 Consensus size: 35
83441292 TACCCAAAGA
* *
83441302 TCTATCCCAACCTTTTTAAGTTTGTCTTAGAC-GAG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-G
* * **
83441337 TTTA-CCCTAACTTTTTTAAGGTTGCCTTAGATGGG
1 TCTATCCC-AACCTTTTTAAGGTTGCCTTAGACAGG
* ** * * *
83441372 TTTATCCCAAGTTTTTTTAA-GCTGCCTTCGAAAAGG
1 TCTATCCCAA-CCTTTTTAAGGTTGCCTTAG-ACAGG
* * * **
83441408 TCTATCCCAACCTTTTTAGGGTT-ACTGTAAATGGG
1 TCTATCCCAACCTTTTTAAGGTTGCCT-TAGACAGG
* * * * *
83441443 TTTATCCCAACATTTTTAATGTTGTCTTAAACAGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGG
* * ** * *
83441478 TCAATCCCGACCTTTTCTAAAATTTTCCTTAGACAAGA
1 TCTATCCCAACCTTTT-T-AAGGTTGCCTTAGAC-AGG
* * *
83441516 TCTATCCCAACCTTTTTAAGGTTACCTTAGA-TGAA
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-G
* * * *
83441551 TCTATCCCAAACTTTTTAAGGTTGCATTAAACAAG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGG
*
83441586 TCTATCCCAACCTTTTTTTAAGGTTGCCTTTGACAAGG
1 TCTATCCCAACC--TTTTTAAGGTTGCCTTAGAC-AGG
* * * *
83441624 TCTGTCCTAACATTTTTAAAAGGTTGCTTTAGACAGG
1 TCTATCCCAACCTTTTT--AAGGTTGCCTTAGACAGG
83441661 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
1 TCTATCCCAACC-TTTTT-AAGGTTGCCTTAGAC-AGG
* *
83441699 TCTAT-CCAAACTATTTTAAAAGGTTGCCTTAGATAAGG
1 TCTATCCCAACCT-TTTT--AAGGTTGCCTTAGA-CAGG
*
83441737 TCTATCCCACCCTTTTTTTAAAGGTTGCCTTAGACAAGG
1 TCTATCCCAACC--TTTTT-AAGGTTGCCTTAGAC-AGG
* * * *
83441776 TTTATACCAACCTATTTAAGGTTGCCTTAGAC-GAT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-G
* * * *
83441811 TCTATCCCAATCTTTTTTAAAAGTCGCCTTAGATAAGG
1 TCTATCCCAA-CCTTTTT-AAGGTTGCCTTAGA-CAGG
* ** * * * *
83441849 TTTATCGTAACTTTTTTTAAATGTTGCCTTCGATAAGG
1 TCTATCCCAAC-CTTTTT-AAGGTTGCCTTAGA-CAGG
* ** *
83441887 TCTATCCCAACTTTTTTAAAAGGTTATCTTAGACTGG
1 TCTATCCCAACCTTTTT--AAGGTTGCCTTAGACAGG
*
83441924 TCTATCCCAACCTTTTTAAGGTTGTCTTAGACAGG
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGG
* *
83441959 TCTATCCCAACCTTGTTCAAAGGTGGGCCTT-GACTAGG
1 TCTATCCCAACCTT-TT-TAAGGT-TGCCTTAGAC-AGG
83441997 TCTATCCCAACCTTTTT
1 TCTATCCCAACCTTTTT
83442014 TAATGGTCGG
Statistics
Matches: 535, Mismatches: 104, Indels: 75
0.75 0.15 0.11
Matches are distributed among these distances:
34 5 0.01
35 163 0.30
36 69 0.13
37 115 0.21
38 146 0.27
39 32 0.06
40 4 0.01
41 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (35 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGG
Found at i:83442949 original size:35 final size:33
Alignment explanation
Indices: 83442890--83442954 Score: 94
Period size: 35 Copynumber: 1.9 Consensus size: 33
83442880 GAAAATATAT
*
83442890 TATATAAATTTATATTTAAAAAATAATAATTCA
1 TATATAAATTTACATTTAAAAAATAATAATTCA
*
83442923 TATATAAAATTTACATTTTAAGAAATAATAAT
1 TATAT-AAATTTACA-TTTAAAAAATAATAAT
83442955 ATTTAGAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.18
34 8 0.29
35 15 0.54
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (33 bp):
TATATAAATTTACATTTAAAAAATAATAATTCA
Found at i:83457806 original size:21 final size:21
Alignment explanation
Indices: 83457774--83457814 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
83457764 AGGCTCGAGG
83457774 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
83457795 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
83457815 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:83465643 original size:20 final size:20
Alignment explanation
Indices: 83465618--83465660 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
83465608 GTAGATGTAC
83465618 AGTTAGGTTGAATATAAGTG
1 AGTTAGGTTGAATATAAGTG
83465638 AGTTAGGTTGAATATAAGTG
1 AGTTAGGTTGAATATAAGTG
83465658 AGT
1 AGT
83465661 GAGATACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (20 bp):
AGTTAGGTTGAATATAAGTG
Found at i:83470667 original size:49 final size:49
Alignment explanation
Indices: 83470560--83470876 Score: 244
Period size: 49 Copynumber: 6.6 Consensus size: 49
83470550 TAATGCCGAT
* * * * * *
83470560 GCCATGTCCCAGAAATGGTCTTACACTGGCTCATC--CATCAAGTC-GAT
1 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAGGCTGAC
*
83470607 GCCATGTCCCAGACATGGTCTTACACCGACTATCGAAATCGAGGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCTGAC
83470656 GCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCTGAC
* * * * *
83470705 GCCATGTCCCAGACATGGTCTGACACT-AGCTCTC-ACATATCCG-TGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCGA-A-AT-CGAGGCTGAC
* * ** * * * *
83470755 GCTATGTCCCAGACATGGTCTTACACT-ATCTCTCG-TCTCAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCGAAATCGAGGCTGAC
* * * * * *
83470803 GCCATGTCCCAGACATGGTTTTACACTGGCTCTC-ATAAT-GTGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCGA-AATCGAGGCTGAC
*
83470851 G-CATGTCCCAGGCAT-GTCTTACACTG
1 GCCATGTCCCAGACATGGTCTTACACTG
83470877 GCACACAAAT
Statistics
Matches: 229, Mismatches: 29, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
46 13 0.06
47 42 0.18
48 53 0.23
49 82 0.36
50 37 0.16
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCTGAC
Found at i:83470807 original size:98 final size:92
Alignment explanation
Indices: 83470553--83470875 Score: 287
Period size: 98 Copynumber: 3.4 Consensus size: 92
83470543 TAGGGTATAA
* * *
83470553 TGCCGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCATC-CATCAAGTCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-ACTC-TCGC-TCAAGCCGATGCCATGTCCC
* *
83470617 AGACATGGTCTTACAC-CGACTATCGAAATCG
63 AGACATGGTCTTACACTAG-CTCTC-AAATCG
* * * * * * * *
83470648 AGGCTGACGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCTGACGCCATGTC
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCG--CTC-AAGCCGATGCCATGTC
*
83470713 CCAGACATGGTCTGACACTAGCTCTCACATATCCG
61 CCAGACATGGTCTTACACTAGCTCTCA-A-AT-CG
*
83470748 TGCCGATGCTATGTCCCAGACATGGTCTTACACTATCTCTCGTCTCAATGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCG-CTCAA-GCCGATGCCATGTCCC
* *
83470813 AGACATGGTTTTACACTGGCTCTCATAAT-G
63 AGACATGGTCTTACACTAGCTCTCA-AATCG
*
83470843 TGGCCGATG-CATGTCCCAGGCAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
83470876 GGCACACAAA
Statistics
Matches: 186, Mismatches: 30, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
94 10 0.05
95 16 0.09
96 40 0.22
97 6 0.03
98 74 0.40
99 38 0.20
100 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTACTCTCGCTCAAGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCAAATCG
Found at i:83472463 original size:36 final size:37
Alignment explanation
Indices: 83472391--83472468 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
83472381 TTATTACGAA
* *
83472391 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
83472428 GTCTTACCCGGA-AAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCT-CCACACGAAGTCATCGG
83472464 GTCTT
1 GTCTT
83472469 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 1 0.03
36 24 0.65
37 12 0.32
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:83472664 original size:47 final size:47
Alignment explanation
Indices: 83472586--83473023 Score: 750
Period size: 47 Copynumber: 9.3 Consensus size: 47
83472576 CCCTTCGGGA
* * * * * * *
83472586 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83472633 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83472680 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83472727 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83472774 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83472821 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83472868 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83472915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83472962 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83473009 CTTATCACATATATA
1 CTTATCACATATATA
83473024 TACTGTCTTG
Statistics
Matches: 374, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 374 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83480004 original size:39 final size:39
Alignment explanation
Indices: 83479945--83480087 Score: 196
Period size: 39 Copynumber: 3.6 Consensus size: 39
83479935 ATCGTGATGT
* *
83479945 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAATG
83479984 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAATG
* * **
83480023 GAAGCCCGAAGGCTACTAATTGAAGTACATAAGTGCTAAACA
1 GAAGCCCGAAGG---CTAACTGAAGCACATAAGTGCTAAATG
*
83480065 GAAGCCCGAAGGCTAACTAAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
83480088 TCATCAGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 57 0.62
42 35 0.38
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.16
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAATG
Found at i:83480143 original size:20 final size:20
Alignment explanation
Indices: 83480118--83480162 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
83480108 CCCCAAAAGG
* *
83480118 GTTAACTGAAACTCATATGA
1 GTTAACGGAAACTCATAAGA
* *
83480138 GTTAACGGAAGCTCGTAAGA
1 GTTAACGGAAACTCATAAGA
83480158 GTTAA
1 GTTAA
83480163 ACAGAAAGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (20 bp):
GTTAACGGAAACTCATAAGA
Found at i:83480905 original size:46 final size:46
Alignment explanation
Indices: 83480838--83480930 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
83480828 AAAATTAATT
*
83480838 ATCTCCTCGTACGGAATACGGATGATGTTCTCATTTGTTTATCTTG
1 ATCTCCTCGTACGGAAAACGGATGATGTTCTCATTTGTTTATCTTG
* * *
83480884 ATCTCCTCGTATGGAAAACGGATGTTGTTCTCATTTTTTTATCTTG
1 ATCTCCTCGTACGGAAAACGGATGATGTTCTCATTTGTTTATCTTG
83480930 A
1 A
83480931 AAATAGACTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.43
Consensus pattern (46 bp):
ATCTCCTCGTACGGAAAACGGATGATGTTCTCATTTGTTTATCTTG
Found at i:83485583 original size:6 final size:6
Alignment explanation
Indices: 83485572--83485598 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
83485562 TGGATGCTAG
83485572 TGTATA TGTATA TGTATA TGTATA TGT
1 TGTATA TGTATA TGTATA TGTATA TGT
83485599 CTAATATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.52
Consensus pattern (6 bp):
TGTATA
Found at i:83488882 original size:42 final size:42
Alignment explanation
Indices: 83488824--83488930 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 42
83488814 ATTAGGGTTA
* *
83488824 ATGAGACTACGTGTAAGACCATATCTGGGATAT-GACATCAAT
1 ATGAGACTATGTGTAAGACCATATCCGGGATATGGA-ATCAAT
* *
83488866 ATGAAACTATGTGTAAGACCATATCCGGGATATGGAATCGAT
1 ATGAGACTATGTGTAAGACCATATCCGGGATATGGAATCAAT
* * *
83488908 ATGAGATTTTATGTAAGACCATA
1 ATGAGACTATGTGTAAGACCATA
83488931 GTTGGGCTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 54 0.96
43 2 0.04
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.28
Consensus pattern (42 bp):
ATGAGACTATGTGTAAGACCATATCCGGGATATGGAATCAAT
Found at i:83490528 original size:47 final size:46
Alignment explanation
Indices: 83490450--83490629 Score: 154
Period size: 47 Copynumber: 3.8 Consensus size: 46
83490440 GGGTCATTTG
* *
83490450 TTTGTGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCAAAT
1 TTTGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCC-AAT
*
83490496 TTTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGG-C-AT
1 TTTGAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCAAT
** * *
83490541 TGAGACGAGATCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGA-
1 TTTGA-GAG--CCAGTGTAAGACATGTCTGGGACATGGCATCGGC--CAAT
** * *
83490590 GATGATAGTCAGTGTAAGACTATGTCTGGGACATGGCATC
1 TTTGAGAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATC
83490630 AGCACCTTAC
Statistics
Matches: 110, Mismatches: 13, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
45 5 0.05
46 36 0.33
47 42 0.38
48 23 0.21
49 3 0.03
50 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (46 bp):
TTTGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCAAT
Found at i:83490619 original size:94 final size:94
Alignment explanation
Indices: 83490458--83490628 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 94
83490448 TGTTTGTGAG
**
83490458 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAAATTTTGAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAAATGATGAGAGCCAGTGTAAGACCATGTCT
83490523 GGGACATGGCATTGGCATTGAGACGAGAT
66 GGGACATGGCATTGGCATTGAGACGAGAT
* * * * *
83490552 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACTATGTC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-AATGATGAGAGCCAGTGTAAGACCATGTC
83490616 TGGGACATGGCAT
65 TGGGACATGGCAT
83490629 CAGCACCTTA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (94 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAAATGATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATTGGCATTGAGACGAGAT
Found at i:83493739 original size:13 final size:11
Alignment explanation
Indices: 83493705--83493743 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
83493695 AAAGAAATAA
83493705 TAAATAT-GTT
1 TAAATATAGTT
83493715 TAAATATAGTT
1 TAAATATAGTT
83493726 TACAATAGTAGTT
1 TA-AATA-TAGTT
83493739 TAAAT
1 TAAAT
83493744 TTCTATTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 7 0.27
11 5 0.19
12 7 0.27
13 7 0.27
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.44
Consensus pattern (11 bp):
TAAATATAGTT
Found at i:83494177 original size:79 final size:80
Alignment explanation
Indices: 83494076--83494244 Score: 209
Period size: 81 Copynumber: 2.1 Consensus size: 80
83494066 TTGAAAACAT
83494076 CCATTCAAACATGAAATCTGTTAGCTCA-TTCTTTTCAC-TAGCAAATAAAATT-AAGACTAACA
1 CCATTCAAACATGAAATCTGTTAGCTCATTTCTTTTCACTTA-CAAATAAAATTGAA-ACTAACA
**
83494138 TACAAAGTTGCAATTAG
64 TACAAAGTCACAATTAG
** * * * *
83494155 CCATTCAAACATGAGCTTTGTTAGTTCATTTTTTTTTCACTTACAAATAAGATTGAAACTAACAT
1 CCATTCAAACATGAAATCTGTTAGCTCA-TTTCTTTTCACTTACAAATAAAATTGAAACTAACAT
*
83494220 ACAAGGTCACAATTAG
65 ACAAAGTCACAATTAG
83494236 CCATTCAAA
1 CCATTCAAA
83494245 ATGTAACAGT
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
79 24 0.31
81 49 0.64
82 4 0.05
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (80 bp):
CCATTCAAACATGAAATCTGTTAGCTCATTTCTTTTCACTTACAAATAAAATTGAAACTAACATA
CAAAGTCACAATTAG
Found at i:83494735 original size:11 final size:11
Alignment explanation
Indices: 83494719--83494743 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83494709 GCTAATTATG
83494719 TATCTGTTTTT
1 TATCTGTTTTT
83494730 TATCTGTTTTT
1 TATCTGTTTTT
83494741 TAT
1 TAT
83494744 AATTTCTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.72
Consensus pattern (11 bp):
TATCTGTTTTT
Found at i:83495636 original size:43 final size:43
Alignment explanation
Indices: 83495479--83495637 Score: 155
Period size: 44 Copynumber: 3.7 Consensus size: 43
83495469 TATGTGAAAT
* *
83495479 CGTGTAAGACCACGTTTAGGACGTTGGCATCGAT-TTGGTATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTG-A-TTA
* * ** *
83495523 CGTGTAAGACCAAGTCTAGGATGTTGGTGTCG-TATTTGATTT
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
*
83495565 CGTGTAAG-CCCCTGTCTAGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTA
* * *
83495608 CATGTAAGACCACGTTTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
83495638 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 2 0.02
42 25 0.27
43 32 0.35
44 33 0.36
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
Found at i:83495867 original size:13 final size:13
Alignment explanation
Indices: 83495849--83495874 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83495839 TGAATTGGGA
83495849 ATATGTGAAATGT
1 ATATGTGAAATGT
83495862 ATATGTGAAATGT
1 ATATGTGAAATGT
83495875 GAAAAAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
ATATGTGAAATGT
Found at i:83499504 original size:19 final size:20
Alignment explanation
Indices: 83499467--83499504 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83499457 ATAAGGTGGT
83499467 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
83499487 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
83499505 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:83501693 original size:11 final size:10
Alignment explanation
Indices: 83501673--83501707 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
83501663 AGAAGTCTTC
83501673 AAAAAAAAAT
1 AAAAAAAAAT
83501683 AAAACAAAAAT
1 AAAA-AAAAAT
83501694 AAAAATAAAAT
1 AAAAA-AAAAT
83501705 AAA
1 AAA
83501708 TGGACTCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.22
11 18 0.78
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:83512085 original size:13 final size:13
Alignment explanation
Indices: 83512067--83512091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83512057 GTGTACTTCC
83512067 CACGGCCGTGTGA
1 CACGGCCGTGTGA
83512080 CACGGCCGTGTG
1 CACGGCCGTGTG
83512092 GATTTATCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTGA
Found at i:83515260 original size:92 final size:96
Alignment explanation
Indices: 83515098--83515320 Score: 240
Period size: 92 Copynumber: 2.3 Consensus size: 96
83515088 CATCATCGAG
* * ** *
83515098 GCCGATGTCATGTCCCAGACATGGTCTTATACTAGCTCTTGCATATCTGTGTCGATGCCACATCC
1 GCCGATGTCATGTCCCAGACATGGTCTTACACTAGCACTTGCATATCAATGCCGATGCCACATCC
83515163 CAGACATGGTCTTACAGAAACACAACGTTTA
66 CAGACATGGTCTTACAGAAACACAACGTTTA
* * **
83515194 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-T-CATCTCAATGCCTATGCCATGTCC
1 GCCGATGTCATGTCCCAGACATGGTCTTACACTAGCACTTGCATATCAATGCCGATGCCACATCC
* * * * **
83515255 CAGACATGGTCTTACACTAGCACTCATC-TCAA
66 CAGACATGGTCTTACA-GA-AACACAACGTTTA
*
83515287 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCCGATGTCATGTCCCAGACATGGTCTTACACT
83515321 GGCTCCCATA
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
92 33 0.31
93 4 0.04
94 25 0.23
95 28 0.26
96 17 0.16
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (96 bp):
GCCGATGTCATGTCCCAGACATGGTCTTACACTAGCACTTGCATATCAATGCCGATGCCACATCC
CAGACATGGTCTTACAGAAACACAACGTTTA
Found at i:83515277 original size:48 final size:48
Alignment explanation
Indices: 83515053--83515320 Score: 278
Period size: 48 Copynumber: 5.6 Consensus size: 48
83515043 TGAGATGCTA
* * *
83515053 ATGCCATGTCCCAGACATGGTCTTACACTGGCTAC-CATCATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCATC-TCAATGCCG
* * * * ** *
83515102 ATGTCATGTCCCAGACATGGTCTTATACTAGCTCTTGCATATCTGTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCAC-T-CATCTCAATGCCG
** * * * * **
83515152 ATGCCACATCCCAGACATGGTCTTACA-GA-AACACAACGTTTA-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATC-TCAATGCCG
*
83515198 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCAATGCCT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAATGCCG
83515244 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAATGCCG
83515292 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
83515321 GGCTCCCATA
Statistics
Matches: 178, Mismatches: 32, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
44 8 0.04
45 15 0.08
46 19 0.11
47 16 0.09
48 59 0.33
49 30 0.17
50 28 0.16
51 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAATGCCG
Found at i:83515313 original size:140 final size:144
Alignment explanation
Indices: 83515057--83515318 Score: 363
Period size: 142 Copynumber: 1.8 Consensus size: 144
83515047 ATGCTAATGC
* * *
83515057 CATGTCCCAGACATGGTCTTACACTGGCTACCATCATCGAGGCCGATGTCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGCTACCATCATCAAGGCCGATGCCATGTCCCAGACATGG
* * ** *
83515122 TCTTATACTAGCTCTTGCATATCTGTGTCGATGCCACATCCCAGACATGGTCTTACAGAAACACA
66 TCTTACACTAGCACTTGCATATCAATGCCGATGCCACATCCCAGACATGGTCTTACAGAAACACA
83515187 ACGTTTAGCCGATG
131 ACGTTTAGCCGATG
* *
83515201 CATGTCCCAGACAT-GTCTTACACTAGC-ACTCATC-TCAATGCCTATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTAC-CATCATCAAGGCCGATGCCATGTCCCAGACATG
* **
83515263 GTCTTACACTAGCAC-T-CATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
65 GTCTTACACTAGCACTTGCATATCAATGCCGATGCCACATCCCAGACATGGTCTTACA
83515319 CTGGCTCCCA
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
140 34 0.33
141 1 0.01
142 39 0.38
143 16 0.15
144 14 0.13
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (144 bp):
CATGTCCCAGACATGGTCTTACACTAGCTACCATCATCAAGGCCGATGCCATGTCCCAGACATGG
TCTTACACTAGCACTTGCATATCAATGCCGATGCCACATCCCAGACATGGTCTTACAGAAACACA
ACGTTTAGCCGATG
Found at i:83515339 original size:48 final size:48
Alignment explanation
Indices: 83515053--83515371 Score: 262
Period size: 48 Copynumber: 6.7 Consensus size: 48
83515043 TGAGATGCTA
* * *
83515053 ATGCCATGTCCCAGACATGGTCTTACACTGGCTACCATCATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCAT-ATCGATGCCG
* * * *
83515102 ATGTCATGTCCCAGACATGGTCTTATACTAGCTCTTGCATATCTG-TGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC--CCATATC-GATGCCG
** * ** * *
83515152 ATGCCACATCCCAGACATGGTCTTACA-GA-AACACA-A-CGTTTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATCG-AT-GCCG
* * * * *
83515198 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCAATGCCT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATCGATGCCG
* * * *
83515244 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATCGATGCCG
* *
83515292 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCAT-ATCGATGCCG
* *
83515340 ATG-TATGTCCTAGACAT-GTCTTACACTAGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
83515372 ACACAAGTGA
Statistics
Matches: 222, Mismatches: 35, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.00
44 9 0.04
45 15 0.07
46 32 0.14
47 27 0.12
48 73 0.33
49 32 0.14
50 29 0.13
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATCGATGCCG
Found at i:83520798 original size:30 final size:30
Alignment explanation
Indices: 83520762--83520821 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
83520752 TAGCCAACTC
83520762 TAATATGTTGTCTTCTTTACCTTGTTCAAT
1 TAATATGTTGTCTTCTTTACCTTGTTCAAT
*
83520792 TAATATGTTGTCTTCTTTATCTTGTTCAAT
1 TAATATGTTGTCTTCTTTACCTTGTTCAAT
83520822 CCTTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (30 bp):
TAATATGTTGTCTTCTTTACCTTGTTCAAT
Found at i:83522701 original size:5 final size:5
Alignment explanation
Indices: 83522691--83522717 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
83522681 AGAAAGTAAT
83522691 TTATA TTATA TTATA TTATA TTATA TT
1 TTATA TTATA TTATA TTATA TTATA TT
83522718 TATCATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTATA
Found at i:83522927 original size:19 final size:19
Alignment explanation
Indices: 83522903--83522943 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
83522893 TTTCCTTAGG
83522903 TTTTAAATTCTTTTAGAAT
1 TTTTAAATTCTTTTAGAAT
* * *
83522922 TTTTAAGTTTTTTTAGTAT
1 TTTTAAATTCTTTTAGAAT
83522941 TTT
1 TTT
83522944 AAGTCTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.66
Consensus pattern (19 bp):
TTTTAAATTCTTTTAGAAT
Found at i:83525015 original size:13 final size:13
Alignment explanation
Indices: 83524997--83525027 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
83524987 ATTTGAAATT
83524997 TAAATCGAGTTCG
1 TAAATCGAGTTCG
83525010 TAAATCGAGTTCG
1 TAAATCGAGTTCG
83525023 TAAAT
1 TAAAT
83525028 ATCAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (13 bp):
TAAATCGAGTTCG
Found at i:83527515 original size:16 final size:17
Alignment explanation
Indices: 83527493--83527533 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
83527483 GAAAATGATA
83527493 AAAAGGTTTTC-AATTG
1 AAAAGGTTTTCAAATTG
*
83527509 GAAAGGTTTTCAAATTG
1 AAAAGGTTTTCAAATTG
83527526 AAAAGGTT
1 AAAAGGTT
83527534 ATTGATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.34
Consensus pattern (17 bp):
AAAAGGTTTTCAAATTG
Found at i:83527530 original size:17 final size:16
Alignment explanation
Indices: 83527493--83527549 Score: 71
Period size: 16 Copynumber: 3.5 Consensus size: 16
83527483 GAAAATGATA
83527493 AAAAGGTTTTCAATTG
1 AAAAGGTTTTCAATTG
*
83527509 GAAAGGTTTTCAAATTG
1 AAAAGGTTTTC-AATTG
*
83527526 AAAAGGTTATT-GATTG
1 AAAAGGTT-TTCAATTG
83527542 AAAAGGTT
1 AAAAGGTT
83527550 ATTGAAGTGC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 22 0.61
17 12 0.33
18 2 0.06
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.35
Consensus pattern (16 bp):
AAAAGGTTTTCAATTG
Found at i:83527541 original size:16 final size:16
Alignment explanation
Indices: 83527522--83527554 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
83527512 AGGTTTTCAA
83527522 ATTGAAAAGGTTATTG
1 ATTGAAAAGGTTATTG
83527538 ATTGAAAAGGTTATTG
1 ATTGAAAAGGTTATTG
83527554 A
1 A
83527555 AGTGCTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.36
Consensus pattern (16 bp):
ATTGAAAAGGTTATTG
Found at i:83528174 original size:25 final size:25
Alignment explanation
Indices: 83528146--83528215 Score: 64
Period size: 25 Copynumber: 3.1 Consensus size: 25
83528136 TTTTTTTTGA
83528146 TGAATCTAAATATCATTTAGTTAGG
1 TGAATCTAAATATCATTTAGTTAGG
**
83528171 TGAA--T--ATATTGTTT--TT-GG
1 TGAATCTAAATATCATTTAGTTAGG
*
83528189 TGAATCTAAATGTCATTTAGTTAGG
1 TGAATCTAAATATCATTTAGTTAGG
83528214 TG
1 TG
83528216 TCGGATAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 14
0.63 0.10 0.27
Matches are distributed among these distances:
18 6 0.18
19 2 0.06
20 1 0.03
21 7 0.21
22 6 0.18
23 1 0.03
24 2 0.06
25 8 0.24
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (25 bp):
TGAATCTAAATATCATTTAGTTAGG
Found at i:83528187 original size:43 final size:43
Alignment explanation
Indices: 83528126--83528215 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
83528116 AATATATTGT
*
83528126 GGTGAATATATTTTTTTTGATGAATCTAAATATCATTTAGTTA
1 GGTGAATATATTGTTTTTGATGAATCTAAATATCATTTAGTTA
* *
83528169 GGTGAATATATTGTTTTTGGTGAATCTAAATGTCATTTAGTTA
1 GGTGAATATATTGTTTTTGATGAATCTAAATATCATTTAGTTA
83528212 GGTG
1 GGTG
83528216 TCGGATAAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.29, C:0.04, G:0.20, T:0.47
Consensus pattern (43 bp):
GGTGAATATATTGTTTTTGATGAATCTAAATATCATTTAGTTA
Found at i:83528231 original size:43 final size:43
Alignment explanation
Indices: 83528141--83528232 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
83528131 ATATATTTTT
* * * *
83528141 TTTGATGAATCTAAATATCATTTAGTTAGGTGAATATATTGTT
1 TTTGGTGAATCTAAATATCATTTAGTTAGGTGAAGATATAGTG
* **
83528184 TTTGGTGAATCTAAATGTCATTTAGTTAGGTGTCGGATA-AGTG
1 TTTGGTGAATCTAAATATCATTTAGTTAGGTG-AAGATATAGTG
83528227 TTTGGT
1 TTTGGT
83528233 TTTGATTCAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 38 0.93
44 3 0.07
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45
Consensus pattern (43 bp):
TTTGGTGAATCTAAATATCATTTAGTTAGGTGAAGATATAGTG
Found at i:83534218 original size:39 final size:40
Alignment explanation
Indices: 83534173--83534340 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
83534163 CGGGGTTTAG
* * *
83534173 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
83534212 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
83534252 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
83534292 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
83534333 CCGGATAT
1 CCGGATAT
83534341 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:83534323 original size:41 final size:40
Alignment explanation
Indices: 83534196--83534340 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
83534186 CTCGCACAAG
* * * * *
83534196 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
83534236 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
83534276 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
83534317 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
83534341 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:83542235 original size:39 final size:40
Alignment explanation
Indices: 83542190--83542357 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
83542180 CGGGGTTTAG
* * *
83542190 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
83542229 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
83542269 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
83542309 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
83542350 CCGGATAT
1 CCGGATAT
83542358 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:83542340 original size:41 final size:40
Alignment explanation
Indices: 83542213--83542357 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
83542203 CTCGCACAAG
* * * * *
83542213 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
83542253 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
83542293 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
83542334 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
83542358 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:83545249 original size:92 final size:92
Alignment explanation
Indices: 83545105--83545276 Score: 301
Period size: 92 Copynumber: 1.9 Consensus size: 92
83545095 GCTATGTCAG
83545105 TTCCAAGCATTTTACACACAACTTTAACCAATTATTTTTATAGGTTGTCAAAGAATGAAGGTTGA
1 TTCCAAGCATTTTACACACAACTTTAACCAATTATTTTTATAGGTTGTCAAAGAATGAAGGTTGA
83545170 TGGAATTGGATTAGAGTGCTACATCAC
66 TGGAATTGGATTAGAGTGCTACATCAC
* *
83545197 TTCCAAGCCTTTTACACACAA-TTTCAACCACTTATTTTTATAGGTTGTCAAAGAATGAAGGTTG
1 TTCCAAGCATTTTACACACAACTTT-AACCAATTATTTTTATAGGTTGTCAAAGAATGAAGGTTG
*
83545261 TTGGAATTGGATTAGA
65 ATGGAATTGGATTAGA
83545277 TTAGTAGGTC
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
91 3 0.04
92 73 0.96
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (92 bp):
TTCCAAGCATTTTACACACAACTTTAACCAATTATTTTTATAGGTTGTCAAAGAATGAAGGTTGA
TGGAATTGGATTAGAGTGCTACATCAC
Found at i:83547441 original size:29 final size:30
Alignment explanation
Indices: 83547399--83547492 Score: 111
Period size: 29 Copynumber: 3.2 Consensus size: 30
83547389 AGAAGAAGCA
* *
83547399 TAAACATATTGAGTCATTTATGCAAAAA-G
1 TAAAAATATTGAGTCATTTATGAAAAAATG
*
83547428 TAAAAATATTGAGTCATTTATTAAAAAATG
1 TAAAAATATTGAGTCATTTATGAAAAAATG
* * * *
83547458 AAAAAAAATTGAATCATTTATTAAAAAATG
1 TAAAAATATTGAGTCATTTATGAAAAAATG
83547488 -AAAAA
1 TAAAAA
83547493 GGAAGTACGA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
29 30 0.52
30 28 0.48
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (30 bp):
TAAAAATATTGAGTCATTTATGAAAAAATG
Found at i:83547469 original size:30 final size:30
Alignment explanation
Indices: 83547406--83547492 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 30
83547396 GCATAAACAT
** * *
83547406 ATTGAGTCATTTATGCAAAAA-GTAAAAAT
1 ATTGAGTCATTTATTAAAAAATGAAAAAAA
83547435 ATTGAGTCATTTATTAAAAAATGAAAAAAA
1 ATTGAGTCATTTATTAAAAAATGAAAAAAA
*
83547465 ATTGAATCATTTATTAAAAAATGAAAAA
1 ATTGAGTCATTTATTAAAAAATGAAAAA
83547493 GGAAGTACGA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
29 19 0.37
30 33 0.63
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (30 bp):
ATTGAGTCATTTATTAAAAAATGAAAAAAA
Done.