Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 255 of 332
Found at i:85143850 original size:13 final size:13
Alignment explanation
Indices: 85143832--85143856 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85143822 AGAGGCAAAC
85143832 AACAAATCAAAAA
1 AACAAATCAAAAA
85143845 AACAAATCAAAA
1 AACAAATCAAAA
85143857 CATTTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
AACAAATCAAAAA
Found at i:85154184 original size:21 final size:21
Alignment explanation
Indices: 85154132--85154186 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
85154122 AGTTATAAAT
*
85154132 AATAATTCTAAATTAAATTTA
1 AATATTTCTAAATTAAATTTA
*
85154153 AATATTT-TAAATGTTAATTTA
1 AATATTTCTAAAT-TAAATTTA
*
85154174 AGT-TTTCTAAATT
1 AATATTTCTAAATT
85154187 CGTATTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.49
Consensus pattern (21 bp):
AATATTTCTAAATTAAATTTA
Found at i:85160964 original size:98 final size:96
Alignment explanation
Indices: 85160834--85161028 Score: 320
Period size: 98 Copynumber: 2.0 Consensus size: 96
85160824 CCTTACTTAT
* *
85160834 CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGCATAATATCCTTTAAGAAAGTGCACAAA
1 CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGAATAATATCCCTTAA-AAA-TGCACAAA
*
85160899 AATAGTCACAATAATTGAATCAAAATATGCCAA
64 AATAGTCACAATAATCGAATCAAAATATGCCAA
*
85160932 CTAAATATCTTCCTCATGTAAA-TAATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAA
1 CTAAATATCTTCCTCAAGTAAACT-ATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAA
85160996 ATAGTCACAATAATCGAATCAAAATATGCCAA
65 ATAGTCACAATAATCGAATCAAAATATGCCAA
85161028 C
1 C
85161029 AAAACAAGCA
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
96 41 0.45
97 4 0.04
98 47 0.51
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (96 bp):
CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAAA
TAGTCACAATAATCGAATCAAAATATGCCAA
Found at i:85168607 original size:22 final size:23
Alignment explanation
Indices: 85168553--85168604 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
85168543 TATAAAACCT
85168553 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
* *
85168575 AATAAAAAGTAGTCTTAAAGTAG
1 AATAAAAAGTAGTCTTAAAGAAA
85168598 AATAAAA
1 AATAAAA
85168605 GTAAAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:85170708 original size:55 final size:55
Alignment explanation
Indices: 85170630--85170765 Score: 155
Period size: 55 Copynumber: 2.5 Consensus size: 55
85170620 TATAAGGATC
* * ** * *
85170630 CACGCCCGTGCTGTTTTGGCAGGTTCGTCCACGGTTGCTTGGCACGGGCGTGTTG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCG
** * * * *
85170685 CACGCCCGTGTTAATTTGACAGGTTTGGCCAGGGTTTCAAGGCACAGGCGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCG
*
85170740 CACGCCTGTGTTGTTTTGGCAGGTTC
1 CACGCCCGTGTTGTTTTGGCAGGTTC
85170766 ACCCATGGCC
Statistics
Matches: 64, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.12, C:0.25, G:0.34, T:0.29
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCG
Found at i:85174523 original size:75 final size:75
Alignment explanation
Indices: 85174395--85174544 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
85174385 AATGTACTCT
85174395 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
1 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
*
85174460 TAAGAATTAA
66 CAAGAATTAA
*
85174470 TAGATAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
1 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
85174535 CAAGAATTAA
66 CAAGAATTAA
85174545 GAACACATAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (75 bp):
TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
CAAGAATTAA
Found at i:85179289 original size:27 final size:27
Alignment explanation
Indices: 85179251--85179305 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
85179241 TCTACGGGGA
85179251 TACCTTTAAAAACACTCGATCACCGAC
1 TACCTTTAAAAACACTCGATCACCGAC
85179278 TACCTTTAAAAACACTCGATCACCGAC
1 TACCTTTAAAAACACTCGATCACCGAC
85179305 T
1 T
85179306 TGGAATTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.33, G:0.07, T:0.24
Consensus pattern (27 bp):
TACCTTTAAAAACACTCGATCACCGAC
Found at i:85185273 original size:46 final size:46
Alignment explanation
Indices: 85185178--85185347 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
85185168 CTCGTAGCCG
* * * ** * * *
85185178 ATGCATGTCCCCGACATGTCTTACGCTGGCT-TACGTCGCGAGGCTA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTATCAATGCCA
*
85185224 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAATGCCA
* * *
85185270 ATGCCATGTCCCAGACATGGTCTTACAATGGCTCTC--AT-AATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTATCAA--T-GCCA
85185318 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
85185348 GCACACATGA
Statistics
Matches: 104, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.02
46 51 0.49
47 30 0.29
48 21 0.20
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAATGCCA
Found at i:85185325 original size:47 final size:45
Alignment explanation
Indices: 85185223--85185347 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 45
85185213 TCGCGAGGCT
* *
85185223 AATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATGCC
1 AATGCATGTCCCAGACATGTCTTACAATAGCTCTCG-ATCAATGCC
*
85185269 AATGCCATGTCCCAGACATGGTCTTACAATGGCTCTC-AT-AATGTGGCC
1 AATG-CATGTCCCAGACAT-GTCTTACAATAGCTCTCGATCAA--T-GCC
* *
85185317 GATGCATGTCCCAGACATGTCTTACACTAGC
1 AATGCATGTCCCAGACATGTCTTACAATAGC
85185348 GCACACATGA
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 16 0.24
47 29 0.43
48 21 0.31
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
AATGCATGTCCCAGACATGTCTTACAATAGCTCTCGATCAATGCC
Found at i:85185696 original size:13 final size:13
Alignment explanation
Indices: 85185678--85185714 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
85185668 CTATACTTGG
85185678 CCCTAAACTTTGC
1 CCCTAAACTTTGC
85185691 CCCTAAACTTTGC
1 CCCTAAACTTTGC
85185704 CCCTAAACTTT
1 CCCTAAACTTT
85185715 TACAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.38, G:0.05, T:0.32
Consensus pattern (13 bp):
CCCTAAACTTTGC
Found at i:85189243 original size:50 final size:50
Alignment explanation
Indices: 85189189--85189316 Score: 157
Period size: 50 Copynumber: 2.6 Consensus size: 50
85189179 ATGAACAAAT
* * * * *
85189189 GAGTTACTTAATGCAAGACTTAATTAAAGATGCACACTTAATTATCATGG
1 GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
* * * *
85189239 GAGTTACATAATGCATGTCATAATTTAATATGCAAACTTAACTATCATGA
1 GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
* *
85189289 GAGTTACATAATGCATGGCATAATTAAA
1 GAGTTACATAATGCAAGACATAATTAAA
85189317 TCATGAACTT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (50 bp):
GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
Found at i:85193279 original size:19 final size:19
Alignment explanation
Indices: 85193255--85193298 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
85193245 TACAAGCAAC
*
85193255 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAAAAA
* *
85193274 ACAACATTAGCCCAAAAAA
1 ACAACATCAACCCAAAAAA
85193293 ACAACA
1 ACAACA
85193299 AAAAAATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.59, C:0.30, G:0.02, T:0.09
Consensus pattern (19 bp):
ACAACATCAACCCAAAAAA
Found at i:85193760 original size:216 final size:219
Alignment explanation
Indices: 85193375--85193777 Score: 652
Period size: 216 Copynumber: 1.8 Consensus size: 219
85193365 GTAAAAAACG
* *
85193375 ACATTATAATAAAAAAAAATATAAGCAAAAGTCTAAAATACAATAGAAACCTACACCACTCCAAA
1 ACATTATAATAAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCC--A
* * *
85193440 CAAAAAAATAAATAAATAACACAACAAAAGTTCAATTAACCAACAACAATAACAAACCAAACCAA
64 CAAAAAAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAAACAAACCAA
* *
85193505 ACTAATAACAATAACACATTAGCTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCC
129 ACTAATAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCC
85193570 AAATAAACAACAAAAACAATACAACA
194 AAATAAACAACAAAAACAATACAACA
* *
85193596 ACATTGTAATAAAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCAGT-C-C
1 ACATTATAAT-AAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCCAC
*
85193659 AAAAAAA-AAA-AAAGAACACAACAAAAGCTCAATTATCCAACAACAATAACAAAACAAACCAAA
65 AAAAAAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAAACAAACCAAA
*
85193722 CTAATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
130 CTAATAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
85193778 TTGTGCTTCA
Statistics
Matches: 170, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
216 102 0.60
217 3 0.02
218 8 0.05
221 10 0.06
222 47 0.28
ACGTcount: A:0.57, C:0.20, G:0.05, T:0.19
Consensus pattern (219 bp):
ACATTATAATAAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCCACA
AAAAAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAAACAAACCAAAC
TAATAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAA
ATAAACAACAAAAACAATACAACA
Found at i:85196196 original size:30 final size:30
Alignment explanation
Indices: 85196160--85196226 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
85196150 GTTAAATTAA
85196160 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
85196190 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
85196220 AAATTAA
1 AAATTAA
85196227 AAATAGATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (30 bp):
AAATTAATTAATATAATAGTACAATAGCAT
Found at i:85197645 original size:40 final size:41
Alignment explanation
Indices: 85197601--85197692 Score: 105
Period size: 41 Copynumber: 2.3 Consensus size: 41
85197591 TATTATACAT
*
85197601 TAGCGGCGTTTGCAAT-AAAACGCCGCAAAAAATTGAGCAA
1 TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
* **** * *
85197641 TAGCGACGTTTTTGGTCCAAACGCCGCTAAAAACTGAGCAA
1 TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
85197682 TAGCGGCGTTT
1 TAGCGGCGTTT
85197693 TTGGTCCAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 11 0.26
41 31 0.74
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (41 bp):
TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
Found at i:85197673 original size:41 final size:41
Alignment explanation
Indices: 85197618--85197710 Score: 159
Period size: 41 Copynumber: 2.3 Consensus size: 41
85197608 GTTTGCAATA
* *
85197618 AAACGCCGCAAAAAATTGAGCAATAGCGACGTTTTTGGTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGACGTTTTTGGTCC
*
85197659 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGACGTTTTTGGTCC
85197700 AAACGCCGCTA
1 AAACGCCGCTA
85197711 TAGATCGAGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGACGTTTTTGGTCC
Found at i:85197745 original size:41 final size:41
Alignment explanation
Indices: 85197700--85197911 Score: 293
Period size: 41 Copynumber: 5.2 Consensus size: 41
85197690 TTTTTGGTCC
* *
85197700 AAACGCCGCTATAGATCGAGGTTTTAGAGGCGCTTCTGGAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
*
85197741 AAACGCCACTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
*
85197782 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTTTGGAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
* * *
85197823 AAACGCCGCTATAGGTCGAGGTTTTAGCGGTGCTTTTGGAG
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
* * ** **
85197864 AAGCGCCGCTATAGATCGATCTTTTAGC-GCGCTT-TTAAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
85197903 AAACGCCGC
1 AAACGCCGC
85197912 AAAAAATATA
Statistics
Matches: 155, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 10 0.06
40 5 0.03
41 140 0.90
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (41 bp):
AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
Found at i:85197745 original size:82 final size:83
Alignment explanation
Indices: 85197659--85197917 Score: 197
Period size: 82 Copynumber: 3.2 Consensus size: 83
85197649 TTTTTGGTCC
* * **
85197659 AAACGCCGCTAAAAACT-GA-GCAATAGCGGCGTTTTTGGTCCAAACGCCGCTATAGATCGAGGT
1 AAACGCCGCTAAAAACTCGAGGCAATAGCGGCGCTTCTGG-AAAAACGCCGCTATAGATCGAGGT
85197722 TTTAGAGGCGCTTCTGGAA
65 TTTAGAGGCGCTTCTGGAA
* * ** *** *
85197741 AAACGCCACT-ATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAAACGCCGCTATAGGTCGAGGTT
1 AAACGCCGCTAAAAACTCGAGGCAATAGCGGCGCTTCTGGAAAAACGCCGCTATAGATCGAGGTT
* *
85197805 TTAGCGGCGCTTTTGGAA
66 TTAGAGGCGCTTCTGGAA
* ** *** * * * * **
85197823 AAACGCCGCT-ATAGGTCGAGGTTTTAGCGGTGCTTTTGGAGAAGCGCCGCTATAGATCGATCTT
1 AAACGCCGCTAAAAACTCGAGGCAATAGCGGCGCTTCTGGAAAAACGCCGCTATAGATCGAGGTT
* **
85197887 TTAG-CGCGCTT-TTAAA
66 TTAGAGGCGCTTCTGGAA
*
85197903 AAACGCCGCAAAAAA
1 AAACGCCGCTAAAAA
85197918 TATATCTGTC
Statistics
Matches: 146, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
80 12 0.08
81 11 0.08
82 109 0.75
83 14 0.10
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (83 bp):
AAACGCCGCTAAAAACTCGAGGCAATAGCGGCGCTTCTGGAAAAACGCCGCTATAGATCGAGGTT
TTAGAGGCGCTTCTGGAA
Found at i:85198105 original size:14 final size:14
Alignment explanation
Indices: 85198074--85198214 Score: 83
Period size: 14 Copynumber: 9.9 Consensus size: 14
85198064 TATAGATTAG
* * *
85198074 GGTTTAGTGTATAT
1 GGTTTAGGGTTTAA
85198088 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
* *
85198102 GGTTTAAGATTTAA
1 GGTTTAGGGTTTAA
*
85198116 GAGTTACTA--TTTTAA
1 G-GTT--TAGGGTTTAA
*
85198131 GGTTTATGGG-TTATG
1 GGTTTA-GGGTTTA-A
* *
85198146 GGTTTAGTGTTTAT
1 GGTTTAGGGTTTAA
* *
85198160 GATTTATGGTTTAA
1 GGTTTAGGGTTTAA
* *
85198174 GGGTTGGGGTTTAA
1 GGTTTAGGGTTTAA
85198188 GG-TTAGGGTTTAGA
1 GGTTTAGGGTTTA-A
85198202 GGTTTAGGGTTTA
1 GGTTTAGGGTTTA
85198215 TGGGTTATAT
Statistics
Matches: 98, Mismatches: 19, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
12 2 0.02
13 9 0.09
14 57 0.58
15 28 0.29
17 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.32, T:0.45
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:85198151 original size:22 final size:21
Alignment explanation
Indices: 85198102--85198175 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 21
85198092 TAGGGTTTAA
* *
85198102 GGTTTAAGATTTAAGAGTTACT
1 GGTTTAAGGTTTATGAGTTA-T
** *
85198124 ATTTTAAGGTTTATGGGTTAT
1 GGTTTAAGGTTTATGAGTTAT
*
85198145 GGGTTT-AGTGTTTATGATTTAT
1 -GGTTTAAG-GTTTATGAGTTAT
85198167 GGTTTAAGG
1 GGTTTAAGG
85198176 GTTGGGGTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
21 9 0.22
22 31 0.77
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.47
Consensus pattern (21 bp):
GGTTTAAGGTTTATGAGTTAT
Found at i:85198197 original size:6 final size:7
Alignment explanation
Indices: 85198126--85198220 Score: 61
Period size: 7 Copynumber: 13.3 Consensus size: 7
85198116 GAGTTACTAT
*
85198126 TTTAAGG
1 TTTAGGG
85198133 TTTATGGG
1 TTTA-GGG
85198141 -TTATGGG
1 TTTA-GGG
*
85198148 TTTAGTG
1 TTTAGGG
* *
85198155 TTTATGA
1 TTTAGGG
*
85198162 TTTATGG
1 TTTAGGG
85198169 TTTAAGGG
1 TTT-AGGG
*
85198177 -TTGGGG
1 TTTAGGG
*
85198183 TTTAAGG
1 TTTAGGG
85198190 -TTAGGG
1 TTTAGGG
85198196 TTTAGAGG
1 TTTAG-GG
85198204 TTTAGGG
1 TTTAGGG
85198211 TTTATGGG
1 TTTA-GGG
85198219 TT
1 TT
85198221 ATATTCTATA
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
6 8 0.11
7 42 0.60
8 20 0.29
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:85198220 original size:15 final size:15
Alignment explanation
Indices: 85198131--85198220 Score: 66
Period size: 15 Copynumber: 6.3 Consensus size: 15
85198121 ACTATTTTAA
85198131 GGTTTATGGG-TTATG
1 GGTTTA-GGGTTTATG
*
85198146 GGTTTAGTGTTTAT-
1 GGTTTAGGGTTTATG
* * *
85198160 GATTTATGGTTTAAG
1 GGTTTAGGGTTTATG
* *
85198175 GG-TTGGGGTTTA-A
1 GGTTTAGGGTTTATG
85198188 GG-TTAGGGTTTA-G
1 GGTTTAGGGTTTATG
85198201 AGGTTTAGGGTTTATG
1 -GGTTTAGGGTTTATG
85198217 GGTT
1 GGTT
85198221 ATATTCTATA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
13 11 0.19
14 22 0.37
15 25 0.42
16 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.46
Consensus pattern (15 bp):
GGTTTAGGGTTTATG
Found at i:85201650 original size:46 final size:46
Alignment explanation
Indices: 85201583--85201754 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
85201573 AACCCGCCCC
*
85201583 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
* *
85201629 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCA-TCCA
* * *
85201680 -CA---AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
*
85201722 TAAGTGAACTCGGACTCAAATCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
85201755 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 1 0.01
46 57 0.55
47 26 0.25
48 1 0.01
49 1 0.01
50 4 0.04
51 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
Found at i:85201696 original size:93 final size:93
Alignment explanation
Indices: 85201589--85201758 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
85201579 CCCCTAAGTG
* * *
85201589 AACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAAC
85201654 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
*
85201682 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAAC
85201747 GAGTTCGGATGC
66 GAGTTCGGATGC
85201759 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Found at i:85202212 original size:30 final size:30
Alignment explanation
Indices: 85202178--85202235 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
85202168 ATTTAATACG
85202178 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
85202208 AACTTTTGCATAATTACACTTTTGCCCC
1 AACTTTAAAAAAATTACACTTTTGCCCC
85202236 ATAGGCTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:85204271 original size:3 final size:3
Alignment explanation
Indices: 85204263--85204288 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
85204253 ATTGGTAACA
85204263 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
85204289 ATGTTAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:85206110 original size:24 final size:24
Alignment explanation
Indices: 85206053--85206099 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
85206043 AACCATGATG
85206053 GTTAATTATTACGAGTTTTGTAGT
1 GTTAATTATTACGAGTTTTGTAGT
*
85206077 GTTAATTATTACTAGTTTTGTAG
1 GTTAATTATTACGAGTTTTGTAG
85206100 CTTCTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (24 bp):
GTTAATTATTACGAGTTTTGTAGT
Found at i:85206373 original size:43 final size:43
Alignment explanation
Indices: 85206326--85206415 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
85206316 CGTTTTCAAA
* * *
85206326 AAAAGTGCCGCTAAAGGTCATGATTTTTAGCGGCGTTTGCGGG
1 AAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCGGG
*
85206369 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTGCGGG
1 AAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCGGG
85206412 AAAA
1 AAAA
85206416 TCTGTAATGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCGGG
Found at i:85207806 original size:47 final size:49
Alignment explanation
Indices: 85207727--85207859 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 49
85207717 TGTAACCCGC
* *
85207727 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
85207777 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
85207821 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
85207860 TTCAACCATC
Statistics
Matches: 71, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
43 3 0.04
44 5 0.07
45 1 0.01
46 2 0.03
47 57 0.80
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:85208313 original size:30 final size:30
Alignment explanation
Indices: 85208279--85208338 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
85208269 CCTTAATACG
85208279 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
85208309 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
85208339 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:85209175 original size:21 final size:21
Alignment explanation
Indices: 85209151--85209190 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
85209141 ATATATTAAT
85209151 TTTTAAAATATATTAAAAAGG
1 TTTTAAAATATATTAAAAAGG
* * *
85209172 TTTTCAAATTTCTTAAAAA
1 TTTTAAAATATATTAAAAA
85209191 AATAATTAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (21 bp):
TTTTAAAATATATTAAAAAGG
Found at i:85209660 original size:19 final size:18
Alignment explanation
Indices: 85209638--85209800 Score: 71
Period size: 19 Copynumber: 8.8 Consensus size: 18
85209628 TCTTTACGTT
* *
85209638 TTTATAATTTTCTTATGAC
1 TTTATAATTTT-TTATAAA
*
85209657 TTTATAA-ATTTTATAAA
1 TTTATAATTTTTTATAAA
*
85209674 TTTATAATTTTTT-TATA
1 TTTATAATTTTTTATAAA
* * *
85209691 TTTCTATATATTTTATAAT
1 TTTATA-ATTTTTTATAAA
* * *
85209710 TTTTTACGATTTTTAAAAAAA
1 TTTATA--ATTTTT-TATAAA
* **
85209731 TTTACAATTTTTTTATATT
1 TTTATAA-TTTTTTATAAA
* *
85209750 TTTATGA-TTTTTATATAT
1 TTTATAATTTTTTATA-AA
*
85209768 TATTATAATTTTTAATAAA
1 T-TTATAATTTTTTATAAA
* *
85209787 TTTTTAATATTTTA
1 TTTATAATTTTTTA
85209801 ATTTTTTATT
Statistics
Matches: 105, Mismatches: 30, Indels: 19
0.68 0.19 0.12
Matches are distributed among these distances:
17 28 0.27
18 24 0.23
19 29 0.28
20 17 0.16
21 7 0.07
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTATAATTTTTTATAAA
Found at i:85209677 original size:8 final size:9
Alignment explanation
Indices: 85209657--85209712 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
85209647 TTCTTATGAC
85209657 TTTATAAAT
1 TTTATAAAT
85209666 TTTATAAA-
1 TTTATAAAT
*
85209674 TTTATAATT
1 TTTATAAAT
* *
85209683 TTTTTATAT
1 TTTATAAAT
*
85209692 TTCTATATAT
1 TT-TATAAAT
85209702 TTTAT-AAT
1 TTTATAAAT
85209710 TTT
1 TTT
85209713 TTACGATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
8 12 0.31
9 19 0.49
10 8 0.21
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTATAAAT
Found at i:85209677 original size:17 final size:17
Alignment explanation
Indices: 85209657--85209708 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
85209647 TTCTTATGAC
85209657 TTTATAAATTTTATAAA
1 TTTATAAATTTTATAAA
* * *
85209674 TTTATAATTTTTTTATAT
1 TTTATAAATTTTATA-AA
*
85209692 TTCTATATATTTTATAA
1 TT-TATAAATTTTATAA
85209709 TTTTTTACGA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 13 0.48
18 4 0.15
19 10 0.37
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATAAATTTTATAAA
Found at i:85209704 original size:36 final size:36
Alignment explanation
Indices: 85209638--85209708 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
85209628 TCTTTACGTT
85209638 TTTATAATTTTCTTATGACTTTATAAATTTTATAAA
1 TTTATAATTTTCTTATGACTTTATAAATTTTATAAA
* * *
85209674 TTTATAATTTTTTTAT-ATTTCTATATATTTTATAA
1 TTTATAATTTTCTTATGACTT-TATAAATTTTATAA
85209709 TTTTTTACGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 3 0.10
36 28 0.90
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (36 bp):
TTTATAATTTTCTTATGACTTTATAAATTTTATAAA
Found at i:85209751 original size:28 final size:27
Alignment explanation
Indices: 85209671--85209751 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 27
85209661 TAAATTTTAT
*
85209671 AAATTTATAATTTTTTTATATTTCTATA
1 AAATTTATAATTTTTTTATATTT-TAAA
* * *
85209699 TATTTTATAA-TTTTTTACGATTTTTAAAA
1 AAATTTATAATTTTTTTA-TA-TTTT-AAA
*
85209728 AAATTTACAATTTTTTTATATTTT
1 AAATTTATAATTTTTTTATATTTT
85209752 TATGATTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
27 7 0.17
28 14 0.34
29 13 0.32
30 7 0.17
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (27 bp):
AAATTTATAATTTTTTTATATTTTAAA
Found at i:85209753 original size:8 final size:8
Alignment explanation
Indices: 85209740--85209809 Score: 52
Period size: 9 Copynumber: 7.9 Consensus size: 8
85209730 ATTTACAATT
85209740 TTTTTATA
1 TTTTTATA
85209748 TTTTTATGA
1 TTTTTAT-A
85209757 TTTTTATA
1 TTTTTATA
85209765 TATTATTATAA
1 T-TT-TTAT-A
85209776 TTTTTAATAAA
1 TTTTT-AT--A
85209787 TTTTTAATA
1 TTTTT-ATA
*
85209796 TTTTAAT-
1 TTTTTATA
85209803 TTTTTAT
1 TTTTTAT
85209810 TAAAATTTAA
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
7 6 0.11
8 11 0.20
9 17 0.31
10 8 0.15
11 12 0.22
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.67
Consensus pattern (8 bp):
TTTTTATA
Found at i:85209779 original size:57 final size:56
Alignment explanation
Indices: 85209671--85209782 Score: 147
Period size: 57 Copynumber: 2.0 Consensus size: 56
85209661 TAAATTTTAT
* *
85209671 AAATTTATAATTTTTTTATATTTCTATATATTTTATAATTTTTTACGATTTTTAAAA
1 AAATTTACAATTTTTTTATATTTCTATATATTTTATAATTTTATAC-ATTTTTAAAA
*
85209728 AAATTTACAATTTTTTTATATTTTTATGAT-TTTTATATATTATTATA-ATTTTTAA
1 AAATTTACAATTTTTTTATATTTCTAT-ATATTTTATA-ATT-TTATACATTTTTAA
85209783 TAAATTTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
57 40 0.82
58 5 0.10
59 4 0.08
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.61
Consensus pattern (56 bp):
AAATTTACAATTTTTTTATATTTCTATATATTTTATAATTTTATACATTTTTAAAA
Found at i:85209927 original size:22 final size:22
Alignment explanation
Indices: 85209887--85209933 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
85209877 CCTTAATTGT
*
85209887 ATTTTTTTGAAAAAGTTTGAGA
1 ATTTTTTTGAAAAAGTTTGAAA
* * *
85209909 ATTTTTTTGATACATTTTGAAA
1 ATTTTTTTGAAAAAGTTTGAAA
85209931 ATT
1 ATT
85209934 CAAGTACCGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.51
Consensus pattern (22 bp):
ATTTTTTTGAAAAAGTTTGAAA
Found at i:85212551 original size:21 final size:20
Alignment explanation
Indices: 85212517--85212555 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
85212507 TCTTTTAATC
*
85212517 TTTTAAAAGTTATTAAAAGT
1 TTTTAAAAGCTATTAAAAGT
85212537 TTTTAGAAAGCTATTAAAA
1 TTTTA-AAAGCTATTAAAA
85212556 TTGAGTTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (20 bp):
TTTTAAAAGCTATTAAAAGT
Found at i:85220337 original size:19 final size:19
Alignment explanation
Indices: 85220313--85220350 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
85220303 AAGTTAATAA
85220313 CAAATTTGATTATGATGGG
1 CAAATTTGATTATGATGGG
*
85220332 CAAATTTGATTATGGTGGG
1 CAAATTTGATTATGATGGG
85220351 TGGCAGTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.37
Consensus pattern (19 bp):
CAAATTTGATTATGATGGG
Found at i:85222972 original size:29 final size:29
Alignment explanation
Indices: 85222930--85222988 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
85222920 TCACTATGAT
85222930 TATACTATTGTTCGATAGGTGTGCTTGCC
1 TATACTATTGTTCGATAGGTGTGCTTGCC
85222959 TATACTATTGTTCGATAGGTGTGCTTGCC
1 TATACTATTGTTCGATAGGTGTGCTTGCC
85222988 T
1 T
85222989 TAGTCGTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.24, T:0.42
Consensus pattern (29 bp):
TATACTATTGTTCGATAGGTGTGCTTGCC
Found at i:85228793 original size:85 final size:85
Alignment explanation
Indices: 85228657--85228825 Score: 302
Period size: 85 Copynumber: 2.0 Consensus size: 85
85228647 GGGTCACATG
*
85228657 GCCAACCACACGCCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
1 GCCAACCACACACCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
*
85228722 AAGGCTGTGTGCCTCACACA
66 AAGGCTGTGTACCTCACACA
* *
85228742 GCCAACCATACACCCGTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
1 GCCAACCACACACCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
85228807 AAGGCTGTGTACCTCACAC
66 AAGGCTGTGTACCTCACAC
85228826 GGTTACCAGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.23, C:0.39, G:0.20, T:0.18
Consensus pattern (85 bp):
GCCAACCACACACCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
AAGGCTGTGTACCTCACACA
Found at i:85234160 original size:13 final size:14
Alignment explanation
Indices: 85234142--85234170 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
85234132 AAAACAAAAT
85234142 AAAAATAAAA-TAA
1 AAAAATAAAATTAA
85234155 AAAAATAAAATTAA
1 AAAAATAAAATTAA
85234169 AA
1 AA
85234171 TGTGATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAAATTAA
Found at i:85235657 original size:42 final size:43
Alignment explanation
Indices: 85235503--85235658 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 43
85235493 TGTGTTATCG
*
85235503 TGTAAGACCACGTCTGGGACGTTGGCA-CTGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATC-GA-TATTTGA-TTACA
* * * ***
85235547 TGTAAGACCATGTTTGGGACGTTGACATC-ATATTTGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
85235589 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
*
85235632 TGT-AGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
85235659 TGTACTAGCT
Statistics
Matches: 91, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 45 0.49
43 20 0.22
44 24 0.26
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:85237987 original size:79 final size:81
Alignment explanation
Indices: 85237851--85238035 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
85237841 TTGAATGATG
* * *
85237851 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
85237915 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
85237930 TTCCGGGCTAAG-CCCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
85237992 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
85238010 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85238036 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:85238042 original size:40 final size:39
Alignment explanation
Indices: 85237852--85238035 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
85237842 TGAATGATGT
* * * *
85237852 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
85237892 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
85237932 CCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85237970 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
85238011 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85238036 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85238057 original size:79 final size:79
Alignment explanation
Indices: 85237904--85238058 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
85237894 GGACTAAGAT
* * **
85237904 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
85237969 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
85237983 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
85238046 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
85238059 ATTCCGAATG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:85240412 original size:34 final size:34
Alignment explanation
Indices: 85240374--85240441 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
85240364 TATTGAACAA
85240374 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
1 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
*
85240408 AGATAGGCCCTAATTCCAAAAATAACAAAAATTG
1 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
85240442 CTAAGTAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (34 bp):
AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
Found at i:85242144 original size:30 final size:30
Alignment explanation
Indices: 85242110--85242169 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
85242100 AATTTCATCC
85242110 AATATTCAAGGCAGTTTCAGTTTTCTCCTT
1 AATATTCAAGGCAGTTTCAGTTTTCTCCTT
*
85242140 AATATTCAGGGCAGTTTCAGTTTTCTCCTT
1 AATATTCAAGGCAGTTTCAGTTTTCTCCTT
85242170 CTCTTATGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (30 bp):
AATATTCAAGGCAGTTTCAGTTTTCTCCTT
Found at i:85242566 original size:15 final size:15
Alignment explanation
Indices: 85242546--85242575 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85242536 GAGATTTTGA
85242546 GCCTTTAGAGCATAC
1 GCCTTTAGAGCATAC
*
85242561 GCCTTTTGAGCATAC
1 GCCTTTAGAGCATAC
85242576 ATTTTTCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (15 bp):
GCCTTTAGAGCATAC
Found at i:85243885 original size:30 final size:30
Alignment explanation
Indices: 85243800--85243885 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 30
85243790 GGTCATTTTA
* *
85243800 ACACGGGCTGGTCACATGCCCGTGTGATCC
1 ACACGGGCTGGCCACATGCCCATGTGATCC
* * ** *
85243830 ACATGGGTTGGCCACACACCTATGTGATCC
1 ACACGGGCTGGCCACATGCCCATGTGATCC
* *
85243860 TCACGGGCTGGCCAGATGCCCATGTG
1 ACACGGGCTGGCCACATGCCCATGTG
85243886 CCAGCCCTTG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (30 bp):
ACACGGGCTGGCCACATGCCCATGTGATCC
Found at i:85246267 original size:24 final size:24
Alignment explanation
Indices: 85246235--85246287 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
85246225 TATCATTATT
*
85246235 GAAGGACACAACATATCACTGGTA
1 GAAGAACACAACATATCACTGGTA
*
85246259 GAAGAACACAACATATCACTTGTA
1 GAAGAACACAACATATCACTGGTA
85246283 GAAGA
1 GAAGA
85246288 CACTAGTATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.17
Consensus pattern (24 bp):
GAAGAACACAACATATCACTGGTA
Found at i:85253694 original size:15 final size:15
Alignment explanation
Indices: 85253674--85253708 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
85253664 TAATAGTTAA
85253674 AAGCATTGTTAAACG
1 AAGCATTGTTAAACG
85253689 AAGCATTGTTAAACG
1 AAGCATTGTTAAACG
85253704 AAGCA
1 AAGCA
85253709 CTAGTTCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (15 bp):
AAGCATTGTTAAACG
Found at i:85269083 original size:69 final size:71
Alignment explanation
Indices: 85268895--85269087 Score: 225
Period size: 71 Copynumber: 2.8 Consensus size: 71
85268885 AATTGATAAG
* * *
85268895 TTGTTATATT-AAAAATGTCTTCATTTACGTTCGA-TTTAAATGCTTAATGTG-TCGCTGTAAAG
1 TTGTTATCTTAAAAAATGTGTTCATTTACG-TCAATTTTAAATGCTTAATGTGCTCGCTGTAAAG
*
85268957 TGCTAAT
65 GGCTAAT
* * * *
85268964 TTGTTATCTTAAAAAAATGTGTTCACTCACGTTAATTTTAGATGCTTAATGTGCT-GCTGTAAAG
1 TTGTTATCTT-AAAAAATGTGTTCATTTACGTCAATTTTAAATGCTTAATGTGCTCGCTGTAAAG
*
85269028 GGCTGAT
65 GGCTAAT
* * *
85269035 TTGTTGTCTT-GAAAATGTGTTCATTTACGTCCATTTTAAATGCTTAATGTGCT
1 TTGTTATCTTAAAAAATGTGTTCATTTACGTCAATTTTAAATGCTTAATGTGCT
85269088 TTCCAGAAAT
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
69 46 0.44
70 2 0.02
71 55 0.53
72 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (71 bp):
TTGTTATCTTAAAAAATGTGTTCATTTACGTCAATTTTAAATGCTTAATGTGCTCGCTGTAAAGG
GCTAAT
Found at i:85279830 original size:15 final size:15
Alignment explanation
Indices: 85279810--85279840 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85279800 CAAGTGGGGG
85279810 TGAAGGCACCCGCGC
1 TGAAGGCACCCGCGC
85279825 TGAAGGCACCCGCGC
1 TGAAGGCACCCGCGC
85279840 T
1 T
85279841 TCACTTCCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.39, G:0.32, T:0.10
Consensus pattern (15 bp):
TGAAGGCACCCGCGC
Found at i:85282556 original size:30 final size:30
Alignment explanation
Indices: 85282501--85282628 Score: 114
Period size: 30 Copynumber: 4.3 Consensus size: 30
85282491 CGACTAATGG
* *
85282501 AAAGGGATAGCTTC-GATTATTGAATTATGA
1 AAAGGGATAGCTTCAG-CTATCGAATTATGA
* * *
85282531 AAAGGGATAGTTTTAGCTATCGAATTATAA
1 AAAGGGATAGCTTCAGCTATCGAATTATGA
* ** * *
85282561 AAATGGATAGCGACAACCATCGAATTATGA
1 AAAGGGATAGCTTCAGCTATCGAATTATGA
* * *
85282591 AAAGGGATGGCTTCGGCTATCAAATTATGA
1 AAAGGGATAGCTTCAGCTATCGAATTATGA
*
85282621 AAATGGAT
1 AAAGGGAT
85282629 GGTGACGACC
Statistics
Matches: 75, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
30 74 0.99
31 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (30 bp):
AAAGGGATAGCTTCAGCTATCGAATTATGA
Found at i:85282588 original size:60 final size:60
Alignment explanation
Indices: 85282522--85282673 Score: 171
Period size: 60 Copynumber: 2.5 Consensus size: 60
85282512 TTCGATTATT
* * *
85282522 GAATTATGAAAAGGGATAGTTTTAGCTATCGAATTATAAAAATGGATAGCGACAACCATC
1 GAATTATGAAAAGGGATAGCTTCAGCTATCAAATTATAAAAATGGATAGCGACAACCATC
* * * * * * *
85282582 GAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAATGGATGGTGACGACCATT
1 GAATTATGAAAAGGGATAGCTTCAGCTATCAAATTATAAAAATGGATAGCGACAACCATC
* * *
85282642 GAATTTTTAAAAGGGATGGCTTC-GACTATCAA
1 GAATTATGAAAAGGGATAGCTTCAG-CTATCAA
85282674 GATATGGAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
59 1 0.01
60 78 0.99
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (60 bp):
GAATTATGAAAAGGGATAGCTTCAGCTATCAAATTATAAAAATGGATAGCGACAACCATC
Found at i:85294503 original size:21 final size:23
Alignment explanation
Indices: 85294445--85294503 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
85294435 AATTTATATT
*
85294445 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
85294466 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
85294489 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
85294504 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:85294764 original size:11 final size:12
Alignment explanation
Indices: 85294734--85294774 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
85294724 ATATGTAAAA
*
85294734 ATAATATATAAT
1 ATAATAAATAAT
85294746 ATATATAAATAAT
1 ATA-ATAAATAAT
85294759 -TAATAAAT-AT
1 ATAATAAATAAT
85294769 ATAATA
1 ATAATA
85294775 CAAGTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
10 2 0.08
11 11 0.42
12 5 0.19
13 8 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:85294782 original size:28 final size:28
Alignment explanation
Indices: 85294736--85294824 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 28
85294726 ATGTAAAAAT
*
85294736 AATATATAATATATA-TAAATAATTAATA
1 AATATATAATACA-AGTAAATAATTAATA
85294764 AATATATAATACAAGTAAA-AATATAATA
1 AATATATAATACAAGTAAATAAT-TAATA
85294792 ATGATATATGAATAACAATGTAAAATAA-TAATA
1 A--ATATAT-AAT-ACAA-GT-AAATAATTAATA
85294825 TTTTGTGAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
27 4 0.08
28 22 0.43
30 6 0.12
31 3 0.06
32 4 0.08
33 7 0.14
34 3 0.06
35 2 0.04
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (28 bp):
AATATATAATACAAGTAAATAATTAATA
Found at i:85294799 original size:58 final size:57
Alignment explanation
Indices: 85294689--85294805 Score: 130
Period size: 58 Copynumber: 2.0 Consensus size: 57
85294679 AAATAACATA
* * *
85294689 ATATAAAATAATTATAATATATAATATGAAAGTATATATGTAAAAATAATATAT-AAT
1 ATATAAAATAATTATAATATATAATA-GAAAGTAAAAATATAAAAATAATATATGAAT
* * *
85294746 ATATATAAATAATTAATAAATATATAATA-CAAGTAAAAATATAATAATGATATATGAAT
1 ATATA-AAATAATT-AT-AATATATAATAGAAAGTAAAAATATAAAAATAATATATGAAT
85294805 A
1 A
85294806 ACAATGTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
57 5 0.10
58 28 0.56
59 6 0.12
60 11 0.22
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (57 bp):
ATATAAAATAATTATAATATATAATAGAAAGTAAAAATATAAAAATAATATATGAAT
Found at i:85294817 original size:32 final size:31
Alignment explanation
Indices: 85294752--85294824 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
85294742 TAATATATAT
85294752 AAATAATTAATAA--ATATATAATACAAGTAA
1 AAATAA-TAATAATGATATATAATACAAGTAA
85294782 AAAT-ATAATAATGATATATGAATAACAATGT-A
1 AAATAATAATAATGATATAT-AAT-ACAA-GTAA
85294814 AAATAATAATA
1 AAATAATAATA
85294825 TTTTGTGAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
28 6 0.16
29 1 0.03
30 10 0.27
31 3 0.08
32 9 0.24
33 8 0.22
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (31 bp):
AAATAATAATAATGATATATAATACAAGTAA
Found at i:85294872 original size:26 final size:24
Alignment explanation
Indices: 85294837--85294906 Score: 90
Period size: 23 Copynumber: 2.9 Consensus size: 24
85294827 TTGTGAAAAG
85294837 TAATATATAATAAATAATAATAATA
1 TAATATATAATAAA-AATAATAATA
*
85294862 TAAATATATAAT-AAAATAATTATA
1 T-AATATATAATAAAAATAATAATA
*
85294886 TAATATATAATATAAA-AATAA
1 TAATATATAATAAAAATAATAA
85294907 GGTTAAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 14 0.35
24 13 0.32
25 3 0.08
26 10 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
TAATATATAATAAAAATAATAATA
Found at i:85296792 original size:206 final size:206
Alignment explanation
Indices: 85296412--85297188 Score: 1293
Period size: 206 Copynumber: 3.8 Consensus size: 206
85296402 AAATTTGCTT
* *
85296412 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * * *
85296477 GCGAAAACCAAATCAACTATGTCTTCGATTTGGTCCTTGTAAGCACAAGGATACCAAACCATCTC
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * * *
85296542 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTACTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
85296607 GAGACGCCAAA
196 GAGACGCCAAA
85296618 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
85296683 GGGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
85296748 GGATCTGCTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTTTTCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
85296813 GAGACGCCAAA
196 GAGACGCCAAA
* *
85296824 CTTCGATTTTTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
85296889 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
85296954 GGATCTACTTCAGTACAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
85297019 GAGATGCCAAA
196 GAGACGCCAAA
** * *
85297030 CTTCGATTTGTTCTCTGACAATACAGAGATGCTGAATCATCTTAGGTTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
85297095 GTGAAAGCCAAATCAGCTATGCCTTTGATTTGTTCCTTGTAAGCCCAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
85297160 GAATCTGCTTCAGTATAAACATCTGAAGG
131 GGATCTGCTTCAGTATAAACATCTGAAGG
85297189 CCAGATTTGC
Statistics
Matches: 536, Mismatches: 35, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
206 536 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGACGCCAAA
Found at i:85299567 original size:42 final size:42
Alignment explanation
Indices: 85299520--85299611 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
85299510 TGGCCCATAG
* ** *
85299520 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
85299562 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
85299604 GCCCATTT
1 GCCCATTT
85299612 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:85299834 original size:26 final size:26
Alignment explanation
Indices: 85299744--85299878 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
85299734 CTGGAGGCCT
*
85299744 AGCCTCTTTT-AAT-AATTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
85299768 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
85299793 AGCCC-TTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
85299818 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
85299844 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
85299870 AGCCCTTTT
1 AGCCCTTTT
85299879 GCAGTTCCTC
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
23 5 0.05
24 21 0.21
25 21 0.21
26 51 0.52
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:85299874 original size:52 final size:51
Alignment explanation
Indices: 85299744--85299878 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
85299734 CTGGAGGCCT
*
85299744 AGCCTCTTTT-AAT-AATTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
85299793 AGCCC-TTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
85299844 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
85299879 GCAGTTCCTC
Statistics
Matches: 80, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
47 3 0.04
48 4 0.05
49 13 0.16
50 25 0.31
51 6 0.08
52 29 0.36
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:85299953 original size:20 final size:20
Alignment explanation
Indices: 85299928--85300014 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
85299918 TTATGAATAC
85299928 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
85299948 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
85299968 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
85299988 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
85300008 ATCATGT
1 ATCATGT
85300015 ATATCATATC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:85300752 original size:27 final size:27
Alignment explanation
Indices: 85300722--85300786 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
85300712 GGACATATTC
85300722 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
85300749 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
85300776 GTCTTTTTACC
1 GTCATTTTACC
85300787 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:85300889 original size:27 final size:27
Alignment explanation
Indices: 85300839--85300937 Score: 103
Period size: 27 Copynumber: 3.6 Consensus size: 27
85300829 GGTAAATCTA
*
85300839 TAAACCAAGGGTATTTC-AGCAATTTTG
1 TAAACCAAGGGTATTTCTA-TAATTTTG
*
85300866 TAAACCAATGGTATTTCTATAATTTT-
1 TAAACCAAGGGTATTTCTATAATTTTG
*
85300892 TAGAAAGTCAAGGGTATTTCTATAATTTTG
1 T--AAA-CCAAGGGTATTTCTATAATTTTG
* *
85300922 TAAATCAGGGGTATTT
1 TAAACCAAGGGTATTT
85300938 TGGTAATTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.53
28 7 0.11
29 20 0.32
30 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
TAAACCAAGGGTATTTCTATAATTTTG
Found at i:85300944 original size:27 final size:27
Alignment explanation
Indices: 85300914--85301083 Score: 193
Period size: 27 Copynumber: 6.3 Consensus size: 27
85300904 GGTATTTCTA
**
85300914 TAATTTTGTAAATCAGGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
* *
85300941 TAATTTTACAAAT-TGAGGGTATTTCGG
1 TAATTTTACAAATCAG-GGGTATTTTGG
* * * *
85300968 TAATTTCACAAACCAGTGGTATTTTGA
1 TAATTTTACAAATCAGGGGTATTTTGG
85300995 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
85301022 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
* **
85301049 TAATTTTACAAATTAGGGGCGTTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
85301076 TAATTTTA
1 TAATTTTA
85301084 TCCTATAGGG
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.02
27 120 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAATCAGGGGTATTTTGG
Found at i:85301067 original size:54 final size:54
Alignment explanation
Indices: 85300927--85301083 Score: 226
Period size: 54 Copynumber: 2.9 Consensus size: 54
85300917 TTTTGTAAAT
* *
85300927 CAGGGGTATTTTGGTAATTTTACAAATT-GAGGGTATTTCGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATTAG-GGGTATTTTGGTAATTTTACAAAC
* * *
85300981 CAGTGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAAC
* **
85301035 TAGGGGTATTTTGGTAATTTTACAAATTAGGGGCGTTTTGGTAATTTTA
1 CAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTA
85301084 TCCTATAGGG
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
54 90 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAAC
Found at i:85301099 original size:81 final size:81
Alignment explanation
Indices: 85300928--85301083 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
85300918 TTTGTAAATC
* * *
85300928 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTTT
85300993 GATAATTTTACAAACT
66 GATAATTTTACAAACT
* * ** *
85301009 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAATTAGGGGCGTTT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTT
*
85301073 TGGTAATTTTA
65 TGATAATTTTA
85301084 TCCTATAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
81 63 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTTT
GATAATTTTACAAACT
Found at i:85301107 original size:81 final size:81
Alignment explanation
Indices: 85300941--85301122 Score: 181
Period size: 81 Copynumber: 2.3 Consensus size: 81
85300931 GGTATTTTGG
* * *
85300941 TAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGATAATTTTACAA
1 TAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTTTGATAATTTTACAA
***
85301006 ACTAGGGGTATTTTGG
66 ACTAGGGGTATTTCAA
* * ** * *
85301022 TAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAATTAGGGGCGTTTTGGTAATTTTATC
1 TAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTTTGATAATTTTA-C
**
85301086 CTA-TAGGGGTATTTCAA
64 AAACTAGGGGTATTTCAA
* *
85301103 TAATTTCAC-AATCGAGGGTA
1 TAATTTTACAAATAGAGGGTA
85301123 AAACGATAAT
Statistics
Matches: 82, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
79 2 0.02
80 7 0.09
81 69 0.84
82 4 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
TAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGCATTTTGATAATTTTACAA
ACTAGGGGTATTTCAA
Found at i:85301142 original size:27 final size:27
Alignment explanation
Indices: 85301112--85301309 Score: 261
Period size: 27 Copynumber: 7.3 Consensus size: 27
85301102 ATAATTTCAC
* *
85301112 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
85301139 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
85301166 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
85301193 AATCGAGGGTAAAATGGTAATTATATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
85301220 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
85301247 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * * *
85301274 AATCGCGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
85301301 AATCGAGGG
1 AATCGAGGG
85301310 CATTTCAGTA
Statistics
Matches: 148, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:85301187 original size:54 final size:54
Alignment explanation
Indices: 85301112--85301309 Score: 306
Period size: 54 Copynumber: 3.7 Consensus size: 54
85301102 ATAATTTCAC
*
85301112 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
*
85301166 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTATATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * *
85301220 AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * * **
85301274 AATCGCGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGG
85301310 CATTTCAGTA
Statistics
Matches: 132, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 132 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:85307210 original size:30 final size:30
Alignment explanation
Indices: 85307176--85307236 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
85307166 TTCTCGAGCC
85307176 TAGGGGCAAAAGTGTAAATATTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATTCAAAAGTT
* * * *
85307206 TAGGGGCAAAATTGTAATTTTTCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATTCAAAAGTT
85307236 T
1 T
85307237 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATTCAAAAGTT
Found at i:85308130 original size:64 final size:65
Alignment explanation
Indices: 85308004--85308130 Score: 150
Period size: 64 Copynumber: 1.9 Consensus size: 65
85307994 TACTATGTGT
* * * * *
85308004 ACACCATGTAGACAAGAGATCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGAC-AGAGAGCTACGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAA
85308069 GG
64 GG
* *
85308071 ACACCATGTAGAC-GAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAGAGAGCTACGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
85308131 TTCGCCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
64 23 0.44
65 14 0.27
66 2 0.04
67 13 0.25
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (65 bp):
ACACCATGTAGACAGAGAGCTACGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAGG
Found at i:85314073 original size:45 final size:46
Alignment explanation
Indices: 85313979--85314088 Score: 195
Period size: 45 Copynumber: 2.4 Consensus size: 46
85313969 TCGCCTCGTC
*
85313979 TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCCACGGAATGCAT
1 TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCCACAGAATGCAT
85314025 TGGATGCGTCTGGATTAGTTCTTTTAGAG-CCCCCACAGAATGCAT
1 TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCCACAGAATGCAT
*
85314070 TGGATGCGTCAGGATTAGT
1 TGGATGCGTCTGGATTAGT
85314089 CACCCTTTTC
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
45 33 0.53
46 29 0.47
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TGGATGCGTCTGGATTAGTTCTTTTAGAGCCCCCCACAGAATGCAT
Found at i:85316409 original size:21 final size:23
Alignment explanation
Indices: 85316351--85316409 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
85316341 AATTTATATT
*
85316351 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
85316372 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
85316395 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
85316410 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:85316585 original size:18 final size:17
Alignment explanation
Indices: 85316552--85316617 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 17
85316542 TAATGATGAT
*
85316552 AATATAT-AGATA-AAA
1 AATATATAATATATAAA
85316567 AATATATAATAGTATAAA
1 AATATATAATA-TATAAA
*
85316585 AATAACATAATATA-AAA
1 AAT-ATATAATATATAAA
85316602 TAAT-TATAATATATAA
1 -AATATATAATATATAA
85316618 TATGAAAGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
15 7 0.17
16 10 0.24
17 7 0.17
18 11 0.26
19 7 0.17
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (17 bp):
AATATATAATATATAAA
Found at i:85316600 original size:16 final size:17
Alignment explanation
Indices: 85316564--85316614 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 17
85316554 TATATAGATA
* *
85316564 AAAAATATATAATAGTAT
1 AAAAATA-ATCATAATAT
85316582 AAAAATAA-CATAATAT
1 AAAAATAATCATAATAT
*
85316598 -AAAATAATTATAATAT
1 AAAAATAATCATAATAT
85316614 A
1 A
85316615 TAATATGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 7 0.25
16 13 0.46
17 1 0.04
18 7 0.25
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AAAAATAATCATAATAT
Found at i:85316630 original size:57 final size:57
Alignment explanation
Indices: 85316550--85316678 Score: 133
Period size: 57 Copynumber: 2.2 Consensus size: 57
85316540 TTTAATGATG
85316550 ATAATATATAGATAAAAAATATATAATAGTATAAA-AATAACAT-A-ATATA-AAATAATT-
1 ATAATATATA-ATAAAAAATATAT-AT-GTA-AAATAAT-ACATAATATATATAAATAATTA
* * *
85316607 ATAATATATAATATGAAAGTATATATGTAAAATAATATATAATATATATAAATAATTA
1 ATAATATATAATA-AAAAATATATATGTAAAATAATACATAATATATATAAATAATTA
85316665 ATAAATATATAATA
1 AT-AATATATAATA
85316679 CAAGTAAAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
54 6 0.10
55 7 0.11
56 10 0.16
57 26 0.42
58 2 0.03
59 11 0.18
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (57 bp):
ATAATATATAATAAAAAATATATATGTAAAATAATACATAATATATATAAATAATTA
Found at i:85316686 original size:28 final size:28
Alignment explanation
Indices: 85316640--85316728 Score: 76
Period size: 28 Copynumber: 3.0 Consensus size: 28
85316630 TATGTAAAAT
*
85316640 AATATATAATATATA-TAAATAATTAATA
1 AATATATAATACA-AGTAAATAATTAATA
85316668 AATATATAATACAAGTAAA-AATATAATA
1 AATATATAATACAAGTAAATAAT-TAATA
85316696 ATGATATATGAATAACAATGTAAAATAA-TAATA
1 A--ATATAT-AAT-ACAA-GT-AAATAATTAATA
85316729 TTTGTGAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
27 4 0.08
28 22 0.43
30 6 0.12
31 3 0.06
32 4 0.08
33 7 0.14
34 3 0.06
35 2 0.04
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (28 bp):
AATATATAATACAAGTAAATAATTAATA
Found at i:85316721 original size:32 final size:31
Alignment explanation
Indices: 85316656--85316728 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
85316646 TAATATATAT
85316656 AAATAATTAATAA--ATATATAATACAAGTAA
1 AAATAA-TAATAATGATATATAATACAAGTAA
85316686 AAAT-ATAATAATGATATATGAATAACAATGT-A
1 AAATAATAATAATGATATAT-AAT-ACAA-GTAA
85316718 AAATAATAATA
1 AAATAATAATA
85316729 TTTGTGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
28 6 0.16
29 1 0.03
30 10 0.27
31 3 0.08
32 9 0.24
33 8 0.22
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (31 bp):
AAATAATAATAATGATATATAATACAAGTAA
Found at i:85316833 original size:20 final size:20
Alignment explanation
Indices: 85316751--85316838 Score: 61
Period size: 20 Copynumber: 4.0 Consensus size: 20
85316741 AATATATAAT
85316751 AAATAATAATAATGTAAATAAATA
1 AAATAATAATAA--T-AA-AAATA
*
85316775 AAATAATTATATAATATATAATA
1 AAATAA-TA-ATAATA-AAAATA
***
85316798 TAAA-AATAAGGTTAAAAATA
1 -AAATAATAATAATAAAAATA
85316818 AAATAATAATAATAAAAATA
1 AAATAATAATAATAAAAATA
85316838 A
1 A
85316839 TTTATATATA
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
19 3 0.06
20 19 0.37
21 3 0.06
22 2 0.04
23 7 0.14
24 11 0.22
25 2 0.04
26 4 0.08
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (20 bp):
AAATAATAATAATAAAAATA
Found at i:85316854 original size:31 final size:32
Alignment explanation
Indices: 85316782--85316864 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 32
85316772 ATAAAATAAT
85316782 TATATAATATATAAT-ATAAAAATAAGGTTAAA
1 TATATAATA-ATAATAATAAAAATAAGGTTAAA
* * * *
85316814 AATAAAATAATAATAATAAAAATAA-TTTATA
1 TATATAATAATAATAATAAAAATAAGGTTAAA
85316845 TATATAATAATAGA-AATAAA
1 TATATAATAATA-ATAATAAA
85316865 TATATAGGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
31 25 0.58
32 18 0.42
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (32 bp):
TATATAATAATAATAATAAAAATAAGGTTAAA
Found at i:85316867 original size:22 final size:22
Alignment explanation
Indices: 85316810--85316870 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 22
85316800 AAAATAAGGT
85316810 TAAAAATAAA-ATA-ATAATAA
1 TAAAAATAAATATATATAATAA
85316830 TAAAAATAATTTATATATATAATAA
1 TAAAAATAA---ATATATATAATAA
*
85316855 TAGAAATAAATATATA
1 TAAAAATAAATATATA
85316871 GGGTTAGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 9 0.26
22 7 0.20
23 1 0.03
24 3 0.09
25 15 0.43
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
TAAAAATAAATATATATAATAA
Found at i:85323147 original size:24 final size:24
Alignment explanation
Indices: 85323115--85323160 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
85323105 CAGATATCAT
85323115 GCTCAGTTAGACACCTTACAATTA
1 GCTCAGTTAGACACCTTACAATTA
85323139 GCTCAGTTAGACACCTTACAAT
1 GCTCAGTTAGACACCTTACAAT
85323161 CAGGTCACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (24 bp):
GCTCAGTTAGACACCTTACAATTA
Found at i:85324661 original size:45 final size:45
Alignment explanation
Indices: 85324607--85324927 Score: 281
Period size: 45 Copynumber: 6.8 Consensus size: 45
85324597 TATGAGAGCT
85324607 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
* *
85324652 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
* * *
85324697 AGTGTAAGACAATGTCTGGGACATGGCATTGGCAC-CGATA-GATGATAAC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACTTGATATG-TG-T--C
* * *
85324746 TAGTGTAAGACCATTTTTGGGACATGACATC-AGCTTGATATGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGATATGTGTC
* * * * *
85324792 AGTGTAAGACCATGTTTGGGACATGGACATTGGCAC-CGATAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGG-CA-TCG-ACTTGAT--AT--GTGTC
* * *
85324843 AGTGTAAGACCATGTCTTGGACATGGCATCAGCCTTGATATACGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATAT----GTGTC
*
85324893 AGTGTAAGACCATGTCTGGGACATGACATCGACTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT
85324928 TGATGGATGA
Statistics
Matches: 226, Mismatches: 28, Indels: 40
0.77 0.10 0.14
Matches are distributed among these distances:
45 94 0.42
46 11 0.05
47 7 0.03
48 5 0.02
49 17 0.08
50 65 0.29
51 27 0.12
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTC
Found at i:85324783 original size:95 final size:94
Alignment explanation
Indices: 85324607--85324967 Score: 360
Period size: 95 Copynumber: 3.8 Consensus size: 94
85324597 TATGAGAGCT
* * * *
85324607 AGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACTTGATATG-TG--TC-AGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-CGATA-GATGAAACTAGTGTAAGACCATT
* *
85324666 TCTGGGACATGGCATCGGCTTGATATATGTC
64 TTTGGGACATGGCATCAGCTTGATATATGTC
*
85324697 AGTGTAAGACAATGTCTGGGACATGGCATTGGCACCGATAGATGATAACTAGTGTAAGACCATTT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCGATAGATGA-AACTAGTGTAAGACCATTT
* *
85324762 TTGGGACATGACATCAGCTTGATATGTGTC
65 TTGGGACATGGCATCAGCTTGATATATGTC
* * *
85324792 AGTGTAAGACCATGTTTGGGACATGGACATTGGCACCGATAGATGAGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGG-CATTGGCACCGATAGATGA-AACTAGTGTAAGACCAT-
* *
85324857 TCTT-GGACATGGCATCAGCCTTGATATACGAGAGTC
63 TTTTGGGACATGGCATCAG-CTTGATAT---A-TGTC
* * * *** * *
85324893 AGTGTAAGACCATGTCTGGGACATGACATCGACTTTGATGGATG-AACTAGTGTAAGACCATATT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCGATAGATGAAACTAGTGTAAGACCATTTT
*
85324957 CGGGACATGGC
66 TGGGACATGGC
85324968 GTTGACACCT
Statistics
Matches: 225, Mismatches: 31, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
90 28 0.12
91 8 0.04
92 2 0.01
94 1 0.00
95 64 0.28
96 47 0.21
97 12 0.05
98 24 0.11
100 12 0.05
101 27 0.12
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCACCGATAGATGAAACTAGTGTAAGACCATTTT
TGGGACATGGCATCAGCTTGATATATGTC
Found at i:85324870 original size:140 final size:137
Alignment explanation
Indices: 85324605--85324927 Score: 328
Period size: 146 Copynumber: 2.3 Consensus size: 137
85324595 GATATGAGAG
*
85324605 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTCAGTGTAAGACCATGTCTG
1 CTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAGTGTAAGACCATGTCTG
** * *
85324670 GGACATGGCATCGGCTTGATATATGTCAGTGTAAGACAATGTCTGGGACATGGCATTGGCACCGA
66 GGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACAATGTCTGGGA-A--GCATTGGCACCGA
85324735 TAGATGATAA
128 TAGATGATAA
* * *
85324745 CTAGTGTAAGACCATTTTTGGGACATGACATC-AGCTTGATATGTGTCAGTGTAAGACCATGTTT
1 CTAGTGTAAGACCATGTCTGGGACATGACATCGA-CTTGATATGTGTCAGTGTAAGACCATGTCT
* * * **
85324809 GGGACATGGACATTGGCACCGATAGATGAGAGCCAGTGTAAGACCATGTCTTGGACATGGCATCA
65 GGGACATGG-CATCGGC-CCGAT--AT-A-AGCCAGTGTAAGACAATGTCTGGGA-A--GCATTG
* * * *
85324874 GC-CTTGATATACGA-GA
121 GCAC-CGATAGATGATAA
*
85324890 GTCAGTGTAAGACCATGTCTGGGACATGACATCGACTT
1 CT-AGTGTAAGACCATGTCTGGGACATGACATCGACTT
85324928 TGATGGATGA
Statistics
Matches: 153, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
139 1 0.01
140 67 0.44
141 6 0.04
142 3 0.02
144 2 0.01
145 4 0.03
146 69 0.45
147 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (137 bp):
CTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACAATGTCTGGGAAGCATTGGCACCGATAG
ATGATAA
Found at i:85324913 original size:146 final size:140
Alignment explanation
Indices: 85324600--85324927 Score: 383
Period size: 140 Copynumber: 2.3 Consensus size: 140
85324590 AGGGAGATAT
* *
85324600 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATATGTGTCAGTGTAAGACCAT
1 GAGAACTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAGTGTAAGACCAT
** * * **
85324665 GTCTGGGACATGGCATCGGCTTGATATATGTCAGTGTAAGACAATGTCTGGGACATGGCATTGGC
66 GTCTGGGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACAATGTCTGGGACATGGCATCAGC
*
85324730 ACCGATAGAT
131 ACCGATAGAC
* * *
85324740 GATAACTAGTGTAAGACCATTTTTGGGACATGACATC-AGCTTGATATGTGTCAGTGTAAGACCA
1 GAGAACTAGTGTAAGACCATGTCTGGGACATGACATCGA-CTTGATATGTGTCAGTGTAAGACCA
* * * *
85324804 TGTTTGGGACATGGACATTGGCACCGATAGATGAGAGCCAGTGTAAGACCATGTCTTGGACATGG
65 TGTCTGGGACATGG-CATCGGC-CCGAT--AT-A-AGCCAGTGTAAGACAATGTCTGGGACATGG
* *
85324869 CATCAGC-CTTGATATAC
124 CATCAGCAC-CGATAGAC
*
85324886 GAG-AGTCAGTGTAAGACCATGTCTGGGACATGACATCGACTT
1 GAGAACT-AGTGTAAGACCATGTCTGGGACATGACATCGACTT
85324928 TGATGGATGA
Statistics
Matches: 156, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
139 1 0.01
140 70 0.45
141 6 0.04
142 3 0.02
144 2 0.01
145 4 0.03
146 69 0.44
147 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (140 bp):
GAGAACTAGTGTAAGACCATGTCTGGGACATGACATCGACTTGATATGTGTCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCCCGATATAAGCCAGTGTAAGACAATGTCTGGGACATGGCATCAGC
ACCGATAGAC
Found at i:85338229 original size:44 final size:45
Alignment explanation
Indices: 85338181--85338268 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 45
85338171 AAAAAATGAA
*
85338181 AAACCTATTCT-AAAAATGGGAAGAAAAGAAAAAG-AAAAGAAAAG
1 AAACCTA-TCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAAG
85338225 AAACCTATCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAA
1 AAACCTATCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAA
85338269 TAAAATAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
43 3 0.07
44 29 0.71
45 9 0.22
ACGTcount: A:0.67, C:0.07, G:0.16, T:0.10
Consensus pattern (45 bp):
AAACCTATCTAAAAAATGGAAAGAAAAGAAAAAGAAAAAGAAAAG
Found at i:85338296 original size:28 final size:28
Alignment explanation
Indices: 85338209--85338298 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
85338199 GGAAGAAAAG
*
85338209 AAAAAGAAAAGAAAAGAAACCT-ATCTA
1 AAAAATAAAAGAAAAGAAACCTAATCTA
* *** *
85338236 AAAAATGGAAAGAAAAGAAAAAGAA--AA
1 AAAAAT-AAAAGAAAAGAAACCTAATCTA
*
85338263 AGAAAATAAAATAAAAGAAACCTAATCTA
1 A-AAAATAAAAGAAAAGAAACCTAATCTA
85338292 AAAAATA
1 AAAAATA
85338299 TGGGAAGGAA
Statistics
Matches: 46, Mismatches: 12, Indels: 9
0.69 0.18 0.13
Matches are distributed among these distances:
27 20 0.43
28 23 0.50
29 3 0.07
ACGTcount: A:0.71, C:0.07, G:0.11, T:0.11
Consensus pattern (28 bp):
AAAAATAAAAGAAAAGAAACCTAATCTA
Found at i:85346627 original size:93 final size:93
Alignment explanation
Indices: 85346463--85346632 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 93
85346453 GGATATTTGG
* * *
85346463 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
85346528 TGAGTCCGAGTTTGTGAGATGTAACTAA
66 TCAGTCCGAGTTTGTGAGATGTAACTAA
* *
85346556 GCATCC-AAGCTCGTTGATTTGAGTTCC-AGTTCACTTATGGATGCGAACGCCCGAGCAT-GTTG
1 GCATCCGAA-CTCGTTGAGTTGAG-TCCGAGTTCACTTATGGATGCGAACGCCCGAAC-TCGTTG
85346618 AGTTCAGTCCGAGTT
63 AGTTCAGTCCGAGTT
85346633 CGCTTATGGG
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
92 2 0.03
93 62 0.91
94 4 0.06
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TCAGTCCGAGTTTGTGAGATGTAACTAA
Found at i:85349618 original size:15 final size:15
Alignment explanation
Indices: 85349581--85349651 Score: 69
Period size: 15 Copynumber: 4.7 Consensus size: 15
85349571 GTATCTTGGG
*
85349581 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
85349596 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
85349611 TTTCTTTATTCT-GA
1 TTTCTTTATTCTGGA
85349625 GTTT-TTCTA-TCTTGGA
1 -TTTCTT-TATTC-TGGA
85349641 TTTCTTTATTC
1 TTTCTTTATTC
85349652 GATTTTCTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 15
0.75 0.02 0.24
Matches are distributed among these distances:
14 8 0.17
15 31 0.66
16 8 0.17
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:85349650 original size:30 final size:30
Alignment explanation
Indices: 85349572--85349651 Score: 94
Period size: 30 Copynumber: 2.7 Consensus size: 30
85349562 CATAGTATCG
* *
85349572 TATCTTGGGTTTCTTTATCCTGGATCTTTT
1 TATCTTGGATTTCTTTATTCTGGATCTTTT
85349602 TAT-TCTGGATTTCTTTATTCT-GAGT-TTTT
1 TATCT-TGGATTTCTTTATTCTGGA-TCTTTT
85349631 CTATCTTGGATTTCTTTATTC
1 -TATCTTGGATTTCTTTATTC
85349652 GATTTTCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
29 7 0.16
30 36 0.82
31 1 0.02
ACGTcount: A:0.12, C:0.15, G:0.14, T:0.59
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTTTT
Found at i:85355899 original size:70 final size:70
Alignment explanation
Indices: 85355786--85355926 Score: 246
Period size: 70 Copynumber: 2.0 Consensus size: 70
85355776 CAAAGTCTTA
*
85355786 CTGTGCACTAAATTCATACAAACAAAATAATGCGTTGATCTAGGATCTATCAATGCAATCACAGA
1 CTGTGCACAAAATTCATACAAACAAAATAATGCGTTGATCTAGGATCTATCAATGCAATCACAGA
85355851 AGTAT
66 AGTAT
* * *
85355856 CTGTGCACAAAATTCATACAAATATAATAATGCGTTGATCTAGGATCTATCAATGCAATCATAGA
1 CTGTGCACAAAATTCATACAAACAAAATAATGCGTTGATCTAGGATCTATCAATGCAATCACAGA
85355921 AGTAT
66 AGTAT
85355926 C
1 C
85355927 ATAGAGAGTA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (70 bp):
CTGTGCACAAAATTCATACAAACAAAATAATGCGTTGATCTAGGATCTATCAATGCAATCACAGA
AGTAT
Found at i:85359636 original size:40 final size:41
Alignment explanation
Indices: 85359581--85359748 Score: 183
Period size: 40 Copynumber: 4.2 Consensus size: 41
85359571 CGGATGATAA
85359581 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTAATAT
*
85359621 CCGGGCTAAGTCCCGAAGGCA-TT-CG-T-GTGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTG-GCTA--ATAT
* * ** *
85359661 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTAATAT
85359701 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTAATAT
85359741 CC-GGCTAA
1 CCGGGCTAA
85359749 ACTCCAAAGG
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
36 3 0.03
37 5 0.05
38 1 0.01
39 10 0.09
40 80 0.74
41 4 0.04
42 1 0.01
43 2 0.02
44 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTAATAT
Found at i:85367747 original size:39 final size:39
Alignment explanation
Indices: 85367612--85367793 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 39
85367602 GATGATAACT
* * ** *
85367612 GGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCC
1 GGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACT-ATACC
* *
85367652 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-CC
*
85367692 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACC
* *
85367731 GGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ACC
*
85367771 GGGCTTAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
85367794 AGCTAGTGGC
Statistics
Matches: 124, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 37 0.30
40 85 0.69
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACC
Found at i:85367807 original size:40 final size:40
Alignment explanation
Indices: 85367606--85367816 Score: 207
Period size: 40 Copynumber: 5.3 Consensus size: 40
85367596 TGTTCGGATG
* * * *
85367606 ATAACTGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTGACT
* *
85367646 A-ATTCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* * *
85367686 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
85367726 AT-ACCGGGCTAAGTCCTGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * * *
85367765 ATAACCGGGCTTAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
85367805 ATATCC-GGCTAA
1 ATAACCGGGCTAA
85367817 ACTCCGAAGG
Statistics
Matches: 145, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
39 42 0.29
40 99 0.68
41 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:85367815 original size:79 final size:80
Alignment explanation
Indices: 85367606--85367816 Score: 268
Period size: 79 Copynumber: 2.7 Consensus size: 80
85367596 TGTTCGGATG
*
85367606 ATAACTGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
*
85367669 CATTCGTGCGAGCTACT
64 CATTCGTGCAAGCTACT
* * * *** *
85367686 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCTGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
* *
85367750 TTTGTGCAAGTTACT
66 TTCGTGCAAGCTACT
*
85367765 ATAACCGGGCTTAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
85367817 ACTCCGAAGG
Statistics
Matches: 110, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
79 74 0.67
80 33 0.30
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCAAGCTACT
Found at i:85379891 original size:11 final size:11
Alignment explanation
Indices: 85379875--85379903 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
85379865 TAAAAGATAA
85379875 AATAAAATATG
1 AATAAAATATG
85379886 AATAAAATATG
1 AATAAAATATG
85379897 AATAAAA
1 AATAAAA
85379904 CTTATCTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (11 bp):
AATAAAATATG
Found at i:85379927 original size:19 final size:18
Alignment explanation
Indices: 85379905--85379944 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
85379895 TGAATAAAAC
85379905 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
85379924 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
85379942 TTA
1 TTA
85379945 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:85380639 original size:13 final size:13
Alignment explanation
Indices: 85380621--85380645 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85380611 GAATTAGTAT
85380621 GTATGAAAATTTC
1 GTATGAAAATTTC
85380634 GTATGAAAATTT
1 GTATGAAAATTT
85380646 AATTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
GTATGAAAATTTC
Found at i:85381863 original size:43 final size:43
Alignment explanation
Indices: 85381728--85381900 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 43
85381718 CATAGGATCC
* * *
85381728 GATATGTGTTTTCGTGTATGACCATGTCTGGGACGTTGGCATT
1 GATATTTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATT
* * * * * * *
85381771 GACT-TATGATTTATGTGTAAGACCATATCTAGGACATCGGCATC
1 GA-TATTTGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCATT
85381815 G-TATTTGATTTCGTGTAAGACTC-TGTCTGGGACAG-TGGCATT
1 GATATTTGATTTCGTGTAAGAC-CATGTCTGGGAC-GTTGGCATT
* * *
85381857 GATATTTGATTACATGTAAGACCAGGTCTGGGACGTTGGCATT
1 GATATTTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATT
85381900 G
1 G
85381901 TACGAGCTTT
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
42 26 0.25
43 51 0.50
44 26 0.25
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (43 bp):
GATATTTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATT
Found at i:85382462 original size:23 final size:24
Alignment explanation
Indices: 85382436--85382481 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
85382426 AGCCATGTGA
*
85382436 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
* *
85382459 TATGGTTTGATTTTTGTATATGA
1 TATGGCTTGATTTTGGTATATGA
85382482 AATGTGATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.17, C:0.02, G:0.26, T:0.54
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:85391582 original size:15 final size:15
Alignment explanation
Indices: 85391562--85391591 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
85391552 GATCTTGAGC
85391562 CTTTAGAGCATGTTA
1 CTTTAGAGCATGTTA
85391577 CTTTAGAGCATGTTA
1 CTTTAGAGCATGTTA
85391592 AAACACCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
CTTTAGAGCATGTTA
Found at i:85400820 original size:43 final size:43
Alignment explanation
Indices: 85400756--85400839 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
85400746 CACATGTATC
* * * *
85400756 GCATCCATTATGAACTTGGACCACTCAACGAGCTCGGATGCTT
1 GCATCCATAACGAACTCGGACCACTCAACGAGCTCAGATGCTT
*
85400799 GCATCCATAACGAACTCGGACCTCTCAACGAGCTCAGATGC
1 GCATCCATAACGAACTCGGACCACTCAACGAGCTCAGATGC
85400840 CACATATATC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.21
Consensus pattern (43 bp):
GCATCCATAACGAACTCGGACCACTCAACGAGCTCAGATGCTT
Found at i:85400868 original size:42 final size:43
Alignment explanation
Indices: 85400774--85400872 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 43
85400764 TATGAACTTG
* ** * * *
85400774 GACCACTCAACGAGCTCGGATGCTTGCATCCATAACGAACTCG
1 GACCACTCAACGAGCTCAGATGCTCACATACATAACGAACCCA
* * *
85400817 GACCTCTCAACGAGCTCAGATGC-CACATATATCACGAACCCA
1 GACCACTCAACGAGCTCAGATGCTCACATACATAACGAACCCA
85400859 GACCACTCAACGAG
1 GACCACTCAACGAG
85400873 TTCGGACTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.31, C:0.34, G:0.18, T:0.16
Consensus pattern (43 bp):
GACCACTCAACGAGCTCAGATGCTCACATACATAACGAACCCA
Found at i:85403988 original size:43 final size:43
Alignment explanation
Indices: 85403940--85404106 Score: 189
Period size: 43 Copynumber: 3.9 Consensus size: 43
85403930 GATTAACGAG
*
85403940 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTATATGTAAGACCATGTCTGGGACATTGGCATCATT
*
85403983 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTATATGTAAGACCATGTCTGGGACATTGGCATCATT
* * * *
85404026 ATTTGATT-TCATGTAAGACCATAG-CTGGG-CTATCGACATCGTT
1 ATGTGATTAT-ATGTAAGACCAT-GTCTGGGAC-ATTGGCATCATT
* * * *
85404069 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTATATGTAAGACCATGTCTGGGACATTGGCAT
85404107 TGTAAGAGCT
Statistics
Matches: 106, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
42 6 0.06
43 99 0.93
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
ATGTGATTATATGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:85408068 original size:50 final size:50
Alignment explanation
Indices: 85407929--85408068 Score: 129
Period size: 50 Copynumber: 2.8 Consensus size: 50
85407919 ATTGTGAGAA
* ** * * *
85407929 CACATGTGTAGTACTATGTACAGGCTACTATGTGTTTAAAATGGATTTATGT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTG--TACCATGCAATTAGGT
* * * * * *
85407981 CACATGTGTAGTATTAAGTGCAAGTTACTACGGGTACCA-GACAATTAGGT
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCATG-CAATTAGGT
*
85408031 CGCATGTGTAGTACTAAGTACAGGCTACTATGTGTACC
1 CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACC
85408069 CGATAGCTTC
Statistics
Matches: 68, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
49 1 0.01
50 40 0.59
52 27 0.40
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCATGCAATTAGGT
Found at i:85408125 original size:51 final size:51
Alignment explanation
Indices: 85408036--85408212 Score: 158
Period size: 51 Copynumber: 3.5 Consensus size: 51
85408026 TAGGTCGCAT
* * *** * *
85408036 GTGTAGTACTAAGTACAGGCTACTATGTGTACCCGATAGCTTCGATTACAT
1 GTGTAGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATTACAA
* * * *
85408087 GTGTGGTACTAAGTGCAGACCACTATGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTAGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATTACAA
* * * * * *
85408138 GTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAG-TAGCTTTGACTACAA
1 GTGTAGTACTAAGTGCAGGCCACTATGTGTA-AAAGATAGCTTTGATTACAA
* * *
85408189 GGGTAGTACTATGTGCAGCCCACT
1 GTGTAGTACTAAGTGCAGGCCACT
85408213 GGGCATCCAT
Statistics
Matches: 102, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
51 98 0.96
52 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (51 bp):
GTGTAGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATTACAA
Found at i:85413284 original size:19 final size:18
Alignment explanation
Indices: 85413262--85413301 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
85413252 TGAATAAAAC
85413262 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
85413281 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
85413299 TTA
1 TTA
85413302 AAACATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:85423701 original size:37 final size:37
Alignment explanation
Indices: 85423647--85423749 Score: 172
Period size: 37 Copynumber: 2.8 Consensus size: 37
85423637 CGAATAGTCC
*
85423647 CCACACGTAGTTATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
85423684 CCATACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
85423721 CCACACAG-AGTCATCGGGTCTTACCCGGA
1 CCACAC-GTAGTCATCGGGTCTTACCCGGA
85423750 ATATATTTCC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 61 0.98
38 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:85423940 original size:48 final size:48
Alignment explanation
Indices: 85423875--85424502 Score: 1004
Period size: 48 Copynumber: 13.1 Consensus size: 48
85423865 GGTCATTCGG
* * *
85423875 CCACAATATACACATCTCCTACATATTTCACATTAGCCATTCGGCTTAA
1 CCAC-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
85423924 CCAAATATTCATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * * *
85423972 CCACATATATATATCTCACACATATTTCATATTAGTCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
85424020 CCACATATACATATCTCATAAATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
85424068 CCACATATACATATCTCATATATATTTCACATTAGTCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
85424116 CCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTCA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
85424164 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
85424212 CCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
85424260 CTACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
85424308 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
85424356 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
85424404 CCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
85424452 CCACATATACATATCGCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
85424500 CCA
1 CCA
85424503 TACATATATA
Statistics
Matches: 533, Mismatches: 46, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
48 530 0.99
49 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:85428080 original size:29 final size:29
Alignment explanation
Indices: 85428048--85428148 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
85428038 GATTAAAGAA
*
85428048 CTCGCCCACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* * * *
85428077 CTCGCACGCCTAGTG-CTCGATTGA-GAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
85428104 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
85428133 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
85428149 TCGGTTGAAG
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
27 14 0.25
28 14 0.25
29 28 0.50
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.23
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:85428104 original size:56 final size:56
Alignment explanation
Indices: 85428023--85428180 Score: 190
Period size: 56 Copynumber: 2.8 Consensus size: 56
85428013 GACTGATTTT
* * * *
85428023 GCACACATAGCGCTCGATTAAAGAACTCGCCCACATAGTGCCTCAATTACCAATCTC
1 GCACACATAGTGCTCGATT-GAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
* * ** *
85428080 GCACGCCTAGTGCTCGATTGAGAACTCGCACACATAGTGCCTCAACTACTGATCTG
1 GCACACATAGTGCTCGATTGAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
* * *
85428136 GCACACATAGTGCTCGGTTGAAGAACTTGCACACACAGTGCCTCA
1 GCACACATAGTGCTCGATTG-AGAACTCGCACACATAGTGCCTCA
85428181 TAACTCCAGC
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
56 48 0.56
57 38 0.44
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (56 bp):
GCACACATAGTGCTCGATTGAGAACTCGCACACATAGTGCCTCAACTACCAATCTC
Done.