Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 258 of 332
Found at i:86235431 original size:16 final size:15
Alignment explanation
Indices: 86235410--86235439 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
86235400 GAATGGAGTA
86235410 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
86235426 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
86235440 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:86243824 original size:48 final size:48
Alignment explanation
Indices: 86243772--86243979 Score: 241
Period size: 48 Copynumber: 4.4 Consensus size: 48
86243762 AATCTTGGAT
* *
86243772 ATGGTCTTACATGGGATCACATATCGATGTCAACGCCATGCCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
* *
86243820 ATGGTCTTACATGGGATCACATATCGATGCCAATGACATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
* *
86243868 ATGGTCTTACATGGGATCACATATCGATG---TCG--ATAG-CCTAG-C
1 ATGGTCTTACATGGGATCACATATCGATGCCAACGCCAT-GTCCCAGAC
* * ** * *
86243910 TATGGTCTTATACGAAATTACATATCGATGCCAAAGCCATGTCCCAGAC
1 -ATGGTCTTACATGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
86243959 ATGGTCTTACATGGGATCACA
1 ATGGTCTTACATGGGATCACA
86243980 CATAACCCTA
Statistics
Matches: 131, Mismatches: 20, Indels: 18
0.78 0.12 0.11
Matches are distributed among these distances:
42 1 0.01
43 30 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 95 0.73
49 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAACGCCATGTCCCAGAC
Found at i:86243953 original size:91 final size:93
Alignment explanation
Indices: 86243772--86243979 Score: 271
Period size: 91 Copynumber: 2.2 Consensus size: 93
86243762 AATCTTGGAT
* **
86243772 ATGGTCTTACATGGGATCACATATCGATGTCAACGCCATGCCCCAGACATGGTCTTACATGGGAT
1 ATGGTCTTACATGGGATCACATATCGATGT--ACG-CATGCCCCAGACATGGTCTTACACGAAAT
*
86243837 CACATATCGATGCCAATGACATGTCCCAGAC
63 CACATATCGATGCCAAAGACATGTCCCAGAC
* * *
86243868 ATGGTCTTACATGGGATCACATATCGATGT-CG-ATAG-CCTAG-CTATGGTCTTATACGAAATT
1 ATGGTCTTACATGGGATCACATATCGATGTACGCAT-GCCCCAGAC-ATGGTCTTACACGAAATC
*
86243929 ACATATCGATGCCAAAGCCATGTCCCAGAC
64 ACATATCGATGCCAAAGACATGTCCCAGAC
86243959 ATGGTCTTACATGGGATCACA
1 ATGGTCTTACATGGGATCACA
86243980 CATAACCCTA
Statistics
Matches: 102, Mismatches: 8, Indels: 9
0.86 0.07 0.08
Matches are distributed among these distances:
90 1 0.01
91 68 0.67
92 1 0.01
93 2 0.02
96 30 0.29
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (93 bp):
ATGGTCTTACATGGGATCACATATCGATGTACGCATGCCCCAGACATGGTCTTACACGAAATCAC
ATATCGATGCCAAAGACATGTCCCAGAC
Found at i:86248824 original size:43 final size:45
Alignment explanation
Indices: 86248708--86248841 Score: 155
Period size: 43 Copynumber: 3.0 Consensus size: 45
86248698 AACATGTATA
* * *
86248708 CATCCATAATGAACTCGGACCTCTCAATGAGCTCGGATGTTACATG
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGCTACA-G
* * * *
86248754 AATCGCATTATGAACTTAGACATCTCAACGAGCTCGGATGCT-C-G
1 CATC-CATAATGAACTCAGACCTCTCAACGAGCTCGGATGCTACAG
* *
86248798 CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGACGCTACA
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGCTACA
86248842 TAGATCACAA
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
43 32 0.44
44 5 0.07
46 4 0.06
47 31 0.43
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (45 bp):
CATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGCTACAG
Found at i:86255512 original size:47 final size:47
Alignment explanation
Indices: 86255434--86255936 Score: 817
Period size: 47 Copynumber: 10.6 Consensus size: 47
86255424 CCCTTCAGGA
* * * * * * *
86255434 CTTATCACATTTATACACTTTCACATCCATCACGTTGGTCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86255481 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86255528 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86255577 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86255624 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86255671 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86255718 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86255765 CTTATCACATATATATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATA--CACTTTCACATTCATCACATCGGCCATTAGGC
86255814 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86255861 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86255910 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
86255937 TATTAAAATG
Statistics
Matches: 429, Mismatches: 21, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
47 292 0.68
49 137 0.32
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86255596 original size:96 final size:94
Alignment explanation
Indices: 86255434--86255936 Score: 810
Period size: 96 Copynumber: 5.3 Consensus size: 94
86255424 CCCTTCAGGA
* * * * * * * *
86255434 CTTATCACATTTATACACTTTCACATCCATCACGTTGG-TCACTCGGCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCT-ATTAGGCCTTATCACATATATACA
86255498 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
86255528 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
86255593 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
86255624 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
86255689 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
86255718 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA--C
*
86255783 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
86255814 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATAC
* *
86255879 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
86255910 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
86255937 TATTAAAATG
Statistics
Matches: 387, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
94 154 0.40
96 225 0.58
97 1 0.00
98 7 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:86255732 original size:143 final size:141
Alignment explanation
Indices: 86255434--86255936 Score: 826
Period size: 143 Copynumber: 3.5 Consensus size: 141
86255424 CCCTTCAGGA
* * * * * * * * *
86255434 CTTATCACATTTATACACTTTCACATCCATCACGTTGGTCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
86255499 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
86255564 TCGGCTATTAGGC
129 TCGGCCATTAGGC
86255577 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
86255642 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAATTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
86255707 GGCCATTAGGC
131 GGCCATTAGGC
86255718 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA--C
86255783 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
86255848 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
86255861 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
86255926 ACTTTCACATT
64 ACTTTCACATT
86255937 TATTAAAATG
Statistics
Matches: 341, Mismatches: 15, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
141 99 0.29
143 190 0.56
145 52 0.15
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:86257478 original size:79 final size:81
Alignment explanation
Indices: 86257335--86257518 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
86257325 GCTACTCGTT
* * *
86257335 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
86257399 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* **
86257414 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
* *
86257477 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
86257494 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86257519 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 33 0.36
79 39 0.43
80 19 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:86257518 original size:40 final size:40
Alignment explanation
Indices: 86257316--86257518 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
86257306 CGGAATTTAA
** *
86257316 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86257356 CCGGTTATAGTAACTCGCACAAATGCCTT-GGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
86257395 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86257434 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
86257474 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
86257514 CCGGA
1 CCGGA
86257519 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86264059 original size:79 final size:82
Alignment explanation
Indices: 86263948--86264132 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
86263938 GCTACTCGTT
*
86263948 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
86264011 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
86264028 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
86264091 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
86264108 CAAA-GCCTTCGGGACCTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
86264133 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:86264132 original size:40 final size:40
Alignment explanation
Indices: 86263929--86264132 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
86263919 CGGAATTTAA
** *
86263929 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86263969 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
86264009 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86264048 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
86264088 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACCTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
86264128 CCGGA
1 CCGGA
86264133 CATCATTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86275166 original size:15 final size:16
Alignment explanation
Indices: 86275146--86275175 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86275136 ATTAGATCAT
86275146 TTTTTA-TTTAATAAG
1 TTTTTATTTTAATAAG
86275161 TTTTTATTTTAATAA
1 TTTTTATTTTAATAA
86275176 ATTAATAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TTTTTATTTTAATAAG
Found at i:86276752 original size:3 final size:3
Alignment explanation
Indices: 86276744--86276775 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
86276734 TAAGGATCCT
86276744 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
86276776 TCCCATAGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:86285106 original size:17 final size:19
Alignment explanation
Indices: 86285072--86285108 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
86285062 TAGGATTTAT
*
86285072 TTTTTTTTTCCTTCTTCTA
1 TTTTTTATTCCTTCTTCTA
86285091 TTTTTTATT-CTT-TTCTA
1 TTTTTTATTCCTTCTTCTA
86285108 T
1 T
86285109 CCTTCTCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTATTCCTTCTTCTA
Found at i:86289773 original size:18 final size:17
Alignment explanation
Indices: 86289750--86289787 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
86289740 CTTTAGGATT
86289750 TATTTTTT-TTCCTTCTTC
1 TATTTTTTATT-CTTC-TC
86289768 TATTTTTTATTCTTCTC
1 TATTTTTTATTCTTCTC
86289785 TAT
1 TAT
86289788 CCTTCTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 12 0.63
19 2 0.11
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTTTATTCTTCTC
Found at i:86293126 original size:50 final size:48
Alignment explanation
Indices: 86292957--86293192 Score: 203
Period size: 48 Copynumber: 4.9 Consensus size: 48
86292947 ATAGGGTATG
** *
86292957 ATGCCGATGCCATGTCTTAGACATGGTCTTACACTAGCTCAT-GTCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCGTATCA
* * * * *
86293005 A-GTCGATGCCATGTCCCA-AGCATGGTCTTACA-TTGACTATTGTCATCG
1 ATGCCGATGCCATGTCCCAGA-CATGGTCTTACACTAG-CTCTCGT-ATCA
* ** *
86293053 AGGCAAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCG--TATCA
* * * * *
86293103 GTGCCGATGCCATATCCTC-GACATGGTCTTACACTAGATCTAGTCTCA
1 ATGCCGATGCCATGTCC-CAGACATGGTCTTACACTAGCTCTCGTATCA
* *
86293151 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
86293193 ATAATGTGGC
Statistics
Matches: 148, Mismatches: 29, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
46 4 0.03
47 31 0.21
48 41 0.28
49 30 0.20
50 40 0.27
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCA
Found at i:86293208 original size:48 final size:46
Alignment explanation
Indices: 86293059--86293236 Score: 152
Period size: 48 Copynumber: 3.7 Consensus size: 46
86293049 ATCGAGGCAA
86293059 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCAT-ATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATAAT--GTG-CG
* *
86293109 ATGCCATATCCTC-GACATGGTCTTACACTAGATCT-AGTCTCAATGT-CG
1 ATGCCATGTCC-CAGACATGGTCTTACACTAGCTCTCA---T-AATGTGCG
*
86293157 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT-GC-G
* * *
86293205 ATG-CATGTACCAGACAT-GTCCTACACTCGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
86293237 ACAATTGCCC
Statistics
Matches: 109, Mismatches: 8, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
45 5 0.05
46 14 0.13
47 16 0.15
48 36 0.33
49 1 0.01
50 34 0.31
51 1 0.01
52 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGCG
Found at i:86296281 original size:28 final size:28
Alignment explanation
Indices: 86296249--86296315 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
86296239 TATAGTTTGT
* *
86296249 ACACTTAGTGCTCAATATTTAA-ACTCGC
1 ACACTTAGTGCTCAATA-ATAACACTCAC
* *
86296277 ACACTTAGTGCTCGATAATAACATTCAC
1 ACACTTAGTGCTCAATAATAACACTCAC
86296305 ACACTTAGTGC
1 ACACTTAGTGC
86296316 AAGATTCACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 3 0.09
28 31 0.91
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
ACACTTAGTGCTCAATAATAACACTCAC
Found at i:86303857 original size:28 final size:28
Alignment explanation
Indices: 86303825--86303891 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
86303815 TATAGTTTGT
* *
86303825 ACACTTAGTGCTCAATATTTAA-ACTCGC
1 ACACTTAGTGCTCAATA-ATAACACTCAC
* *
86303853 ACACTTAGTGCTCGATAATAACATTCAC
1 ACACTTAGTGCTCAATAATAACACTCAC
86303881 ACACTTAGTGC
1 ACACTTAGTGC
86303892 AAGATTCACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 3 0.09
28 31 0.91
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
ACACTTAGTGCTCAATAATAACACTCAC
Found at i:86319559 original size:47 final size:47
Alignment explanation
Indices: 86319488--86319711 Score: 209
Period size: 47 Copynumber: 4.6 Consensus size: 47
86319478 AGGGTATGAT
* *
86319488 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCATGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAA
* * * **
86319535 GTCGATGCCATGTCCCAAACATGGTCTTACACTAACT-ATTGTCATTGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-TGTC-TCAA
* * * **
86319583 GACCGACGCCATGTCCCAGACATGGTCTTACATTAGCTCTCACATATC-CGT
1 G-CCGATGCCATGTCCCAGACATGGTCTTACACTAG--CT--CATGTCTCAA
* *
86319634 GCCGATGCCATGTCCCCGACATGGTCTTACACTAGCTCACGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAA
* * *
86319681 TGCCGATGCCATGTTCCAAACATGGTTTTAC
1 -GCCGATGCCATGTCCCAGACATGGTCTTAC
86319712 TTTGGCTCTC
Statistics
Matches: 141, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
46 5 0.04
47 37 0.26
48 31 0.22
49 29 0.21
50 31 0.22
51 4 0.03
53 3 0.02
54 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAA
Found at i:86335852 original size:22 final size:22
Alignment explanation
Indices: 86335824--86335868 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
86335814 ATTTATAGCC
86335824 TACCAAAACGGCACCGTTTTGG
1 TACCAAAACGGCACCGTTTTGG
*
86335846 TACCAAAATGGCACCGTTTTGG
1 TACCAAAACGGCACCGTTTTGG
86335868 T
1 T
86335869 GCCCAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (22 bp):
TACCAAAACGGCACCGTTTTGG
Found at i:86336285 original size:18 final size:17
Alignment explanation
Indices: 86336257--86336290 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
86336247 TCATTTTCTG
86336257 TATTTTATTTGTTATAA
1 TATTTTATTTGTTATAA
86336274 TATTTATATTTGTTATA
1 TATTT-TATTTGTTATA
86336291 TTAAATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTTTATTTGTTATAA
Found at i:86336335 original size:27 final size:28
Alignment explanation
Indices: 86336301--86336376 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 28
86336291 TTAAATGTAT
*
86336301 TTAT-TATATGTCTTTTAAATATT-ATG
1 TTATATATATGTATTTTAAATATTGATG
* *
86336327 TTATATATATGTATTTTCAATATTGTTG
1 TTATATATATGTATTTTAAATATTGATG
*
86336355 TTATAT-TAT-TATTATTATATAT
1 TTATATATATGTATT-TTAAATAT
86336377 ATTTGTTCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
26 8 0.19
27 26 0.62
28 8 0.19
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.59
Consensus pattern (28 bp):
TTATATATATGTATTTTAAATATTGATG
Found at i:86336383 original size:27 final size:28
Alignment explanation
Indices: 86336301--86336398 Score: 75
Period size: 27 Copynumber: 3.5 Consensus size: 28
86336291 TTAAATGTAT
*
86336301 TTAT-TATATGTCTTTT-AA-ATATTATG
1 TTATATATATGTATTTTCAATATATT-TG
86336327 TTATATATATGTATTTTCAATAT-TGTTG
1 TTATATATATGTATTTTCAATATAT-TTG
86336355 TTATAT-TAT-TATTATT-ATATATATTTG
1 TTATATATATGTATT-TTCA-ATATATTTG
86336382 TTCTAGTATATATGTAT
1 -T-TA-TATATATGTAT
86336399 ATTTACACGT
Statistics
Matches: 59, Mismatches: 1, Indels: 18
0.76 0.01 0.23
Matches are distributed among these distances:
26 9 0.15
27 23 0.39
28 13 0.22
29 5 0.08
30 3 0.05
31 3 0.05
32 3 0.05
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (28 bp):
TTATATATATGTATTTTCAATATATTTG
Found at i:86336908 original size:17 final size:17
Alignment explanation
Indices: 86336878--86336910 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
86336868 ATTTTTAATA
86336878 CTTTACTATATATATAC
1 CTTTACTATATATATAC
86336895 CTTTA-TATATTATATA
1 CTTTACTATA-TATATA
86336911 TATATTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (17 bp):
CTTTACTATATATATAC
Found at i:86349660 original size:79 final size:77
Alignment explanation
Indices: 86349409--86349707 Score: 285
Period size: 79 Copynumber: 3.9 Consensus size: 77
86349399 TAATTTATAC
* * *
86349409 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTTA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCA
86349474 ATTTCTG-TTT-
66 ATTTCTGTTTTG
*** * ** * * **
86349484 TTCAAAAAAATCAACTCACATTGCGAGATATGAGTTGAACCTC-GGTTCA--C--ATGTTCTGTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGG-ACACGCTGAGGTAAT-TT
**
86349544 C--TTTCAATTTATG
64 CAATTTCTGTTT-TG
* * *
86349557 -TTTCAAAAGAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
1 TTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTT
86349621 CAATTTCTGTTTCTG
64 CAATTTCTGTTT-TG
* *
86349636 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 -TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTC
86349701 AATTTCT
65 AATTTCT
86349708 ATTCTTCCAA
Statistics
Matches: 176, Mismatches: 32, Indels: 28
0.75 0.14 0.12
Matches are distributed among these distances:
70 4 0.02
71 6 0.03
72 4 0.02
73 4 0.02
74 34 0.19
75 40 0.23
76 1 0.01
77 3 0.02
78 4 0.02
79 69 0.39
80 3 0.02
81 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (77 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCA
ATTTCTGTTTTG
Found at i:86349903 original size:55 final size:55
Alignment explanation
Indices: 86349813--86350134 Score: 504
Period size: 55 Copynumber: 5.9 Consensus size: 55
86349803 TCTATTTTCC
*
86349813 ATTTCTGTTTTTCAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTTA
1 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
86349867 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
1 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
* * *
86349922 ATTTTTGTTTTTCAAAAAGTCAACACATATTGCAAGAGGTGAGTTGAGCCTTTTA
1 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
* * * *
86349977 ATTTTTGTTTTTCAAAAAGTCAACACATATTGCAAGAGGTGAGTTAAGCCTTTTA
1 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
86350032 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
1 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
* * * * **
86350087 ATATCTATTTTT-AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGC
86350135 TCAAGATCAC
Statistics
Matches: 252, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
54 50 0.20
55 202 0.80
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (55 bp):
ATTTCTGTTTTTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTA
Found at i:86351580 original size:22 final size:22
Alignment explanation
Indices: 86351552--86351596 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
86351542 ATTTATAGCC
86351552 TACCAAAACGGCACCGTTTTGG
1 TACCAAAACGGCACCGTTTTGG
*
86351574 TACCAAAATGGCACCGTTTTGG
1 TACCAAAACGGCACCGTTTTGG
86351596 T
1 T
86351597 GCCCAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (22 bp):
TACCAAAACGGCACCGTTTTGG
Found at i:86352014 original size:18 final size:17
Alignment explanation
Indices: 86351986--86352019 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
86351976 TCATTTTCTG
86351986 TATTTTATTTGTTATAA
1 TATTTTATTTGTTATAA
86352003 TATTTATATTTGTTATA
1 TATTT-TATTTGTTATA
86352020 TTAAATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTTTATTTGTTATAA
Found at i:86352064 original size:27 final size:28
Alignment explanation
Indices: 86352030--86352106 Score: 79
Period size: 27 Copynumber: 2.8 Consensus size: 28
86352020 TTAAATGTAT
*
86352030 TTAT-TATATGTCTTTTAAATATT-ATG
1 TTATATATATGTATTTTAAATATTGATG
* *
86352056 TTATATATATGTATTTTCAATATTGTTG
1 TTATATATATGTATTTTAAATATTGATG
* *
86352084 TTATATTTAT-TATTATTATATAT
1 TTATATATATGTATT-TTAAATAT
86352107 ATTTGTTCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
26 4 0.10
27 21 0.50
28 17 0.40
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (28 bp):
TTATATATATGTATTTTAAATATTGATG
Found at i:86352112 original size:28 final size:28
Alignment explanation
Indices: 86352030--86352128 Score: 75
Period size: 28 Copynumber: 3.5 Consensus size: 28
86352020 TTAAATGTAT
*
86352030 TTAT-TATATGTCTTTT-AA-ATATTATG
1 TTATATATATGTATTTTCAATATATT-TG
86352056 TTATATATATGTATTTTCAATAT-TGTTG
1 TTATATATATGTATTTTCAATATAT-TTG
*
86352084 TTATATTTAT-TATTATT-ATATATATTTG
1 TTATATATATGTATT-TTCA-ATATATTTG
86352112 TTCTAGTATATATGTAT
1 -T-TA-TATATATGTAT
86352129 ATATTTACAC
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
26 4 0.07
27 16 0.27
28 23 0.39
29 5 0.08
30 2 0.03
31 6 0.10
32 3 0.05
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (28 bp):
TTATATATATGTATTTTCAATATATTTG
Found at i:86352566 original size:27 final size:27
Alignment explanation
Indices: 86352535--86352586 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
86352525 CTATGCATAC
* * *
86352535 ATACTTTTAACATTATATTTTATATGT
1 ATACTCTTAACATCATATTATATATGT
86352562 ATACTCTTAACATCATATTATATAT
1 ATACTCTTAACATCATATTATATAT
86352587 ATCTTGCACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.50
Consensus pattern (27 bp):
ATACTCTTAACATCATATTATATATGT
Found at i:86361967 original size:43 final size:43
Alignment explanation
Indices: 86361919--86362030 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
86361909 TCTTAGATAT
* * *
86361919 GGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACAG
* * * *
86361962 GGTCTTACACGTAATCTCA-ATACAATGCCAATGTCCCAAACAT
1 GGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAAACAG
*
86362005 GGTCTTACATGTAATCACATCTCGAT
1 GGTCTTACATGTAATCACATATCGAT
86362031 AACCTAATGA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 2 0.04
43 53 0.95
44 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACAG
Found at i:86374098 original size:23 final size:23
Alignment explanation
Indices: 86374072--86374118 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
86374062 CATTCTATTG
*
86374072 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
86374095 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
86374118 T
1 T
86374119 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:86383920 original size:25 final size:25
Alignment explanation
Indices: 86383887--86383949 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
86383877 AATCACAACG
86383887 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATTAGGTGAC
86383912 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATTAGGTGAC
* *
86383937 AAAATTAGAATCA
1 AGAATCAGAATCA
86383950 AAATCAGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATTAGGTGAC
Found at i:86383924 original size:31 final size:30
Alignment explanation
Indices: 86383887--86383984 Score: 89
Period size: 31 Copynumber: 3.4 Consensus size: 30
86383877 AATCACAACG
86383887 AGAATCAGAATCAGAATTAGGT---G-A-C
1 AGAATCAGAATCAGAATTAGGTACAGAATC
* *
86383912 AGAATCAGAATCAGAATTAGGTGACAAAATT
1 AGAATCAGAATCAGAATTAGGT-ACAGAATC
* * *
86383943 AGAATCAAAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATTAGGT-ACAGAATC
*
86383974 AAAATCAGAAT
1 AGAATCAGAAT
86383985 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
25 22 0.39
30 1 0.02
31 34 0.60
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGGTACAGAATC
Found at i:86384151 original size:27 final size:26
Alignment explanation
Indices: 86384103--86384162 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
86384093 GCGAGGCTGC
*
86384103 CAGATATTGTGACAAAGTCACCAAATA
1 CAGATATTGTGACAAAGCCACCAAA-A
* * * *
86384130 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAAAA
86384156 CAGATAT
1 CAGATAT
86384163 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAAAA
Found at i:86384243 original size:27 final size:26
Alignment explanation
Indices: 86384203--86384254 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
86384193 GCGAGGCTGC
*
86384203 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
86384229 CAGATATATGTGACGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
86384255 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86384950 original size:27 final size:27
Alignment explanation
Indices: 86384920--86385044 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
86384910 TCTACCCTAT
** *
86384920 AGGGGTATTTCAGTAATTTTACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
86384947 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * *
86384974 AGGGATATTTTGGTAATTTTGCTAA-T
1 AGGGGTATTTTGGTAATTTTACAAACC
*
86385000 TGAGGGTATTTTGGTAATTTTACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACC
86385028 AGGGGTATTTTGGTAAT
1 AGGGGTATTTTGGTAAT
86385045 GTGGTAAACT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 81 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:86387203 original size:25 final size:25
Alignment explanation
Indices: 86387143--86387197 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
86387133 AATCAAAATA
86387143 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATTAGGTGAC
*
86387168 AGAATCAGAATCAGAATTAGTTGAC
1 AGAATCAGAATCAGAATTAGGTGAC
86387193 AGAAT
1 AGAAT
86387198 TGGAATTAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.45, C:0.11, G:0.22, T:0.22
Consensus pattern (25 bp):
AGAATCAGAATCAGAATTAGGTGAC
Found at i:86388172 original size:27 final size:27
Alignment explanation
Indices: 86388140--86388203 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
86388130 AGGCAAAATG
*
86388140 GTAATTTTACCCCACGAGGGTATCTCA
1 GTAATTTTACCCCACAAGGGTATCTCA
* * *
86388167 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATCTCA
86388194 GTAATTTTAC
1 GTAATTTTAC
86388204 AAATCAGGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATCTCA
Found at i:86388214 original size:27 final size:27
Alignment explanation
Indices: 86388184--86388281 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 27
86388174 TACCCTACAA
**
86388184 GGGTATTTCAGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAG
***
86388211 GGGTATTTTGGTAATTTTTTTAATC-G
1 GGGTATTTTGGTAATTTTACAAATCAG
*
86388237 AGGGTATTTTGGTAATTTTACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATCAG
* *
86388265 GTGCATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
86388282 CGTAAACTAA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
26 1 0.02
27 56 0.97
28 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAG
Found at i:86392215 original size:39 final size:39
Alignment explanation
Indices: 86391790--86392207 Score: 617
Period size: 39 Copynumber: 10.7 Consensus size: 39
86391780 TAATTGAGGA
* * * *
86391790 TTATAACCGGGCTAAGACCCGTAGGCCTT-GTG-TGAGAT-
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG-G-TG
*
86391828 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
86391867 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
86391906 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
86391945 TTATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
86391984 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
86392023 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
86392062 TTATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
86392101 TTATATCCAGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
86392140 TTATATCTGGGATAAGTCCCGAAGGTATTCCTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
86392179 TTATATCCGGGCTAAGTCCTGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
86392208 TGTGTTGGAA
Statistics
Matches: 348, Mismatches: 29, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
38 25 0.07
39 321 0.92
40 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:86401008 original size:17 final size:17
Alignment explanation
Indices: 86400986--86401021 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
86400976 GGATTTTATG
86400986 AGAGTTCATAGAACCCT
1 AGAGTTCATAGAACCCT
86401003 AGAGTTCATAGAACCCT
1 AGAGTTCATAGAACCCT
86401020 AG
1 AG
86401022 TTGACAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (17 bp):
AGAGTTCATAGAACCCT
Found at i:86402415 original size:32 final size:32
Alignment explanation
Indices: 86402377--86402441 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
86402367 TGTGAAAACG
86402377 GTGAAATTCTTCAAGTTGAATTAAATGAGCGA
1 GTGAAATTCTTCAAGTTGAATTAAATGAGCGA
* *
86402409 GTGAAATTCTTCGAGTTGAATTAGATGAGCGA
1 GTGAAATTCTTCAAGTTGAATTAAATGAGCGA
86402441 G
1 G
86402442 ATAGATTGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (32 bp):
GTGAAATTCTTCAAGTTGAATTAAATGAGCGA
Found at i:86411049 original size:24 final size:24
Alignment explanation
Indices: 86410995--86411088 Score: 100
Period size: 24 Copynumber: 3.9 Consensus size: 24
86410985 CAGCTCGTAT
* * *
86410995 GAGCTTACTGATATATCAGCTCGTAA
1 GAGCTTACTG-T-TTTCAGCTCATTA
* *
86411021 TAGCTTACTGTTTTCAGCTCATTG
1 GAGCTTACTGTTTTCAGCTCATTA
*
86411045 GAGCTTACCG-TTTCAGCTCATTA
1 GAGCTTACTGTTTTCAGCTCATTA
*
86411068 GAGCTTACTGTTATCAGCTCA
1 GAGCTTACTGTTTTCAGCTCA
86411089 GGAGGAGCTT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
23 21 0.37
24 26 0.46
25 1 0.02
26 9 0.16
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (24 bp):
GAGCTTACTGTTTTCAGCTCATTA
Found at i:86411062 original size:23 final size:23
Alignment explanation
Indices: 86411022--86411102 Score: 90
Period size: 23 Copynumber: 3.4 Consensus size: 23
86411012 AGCTCGTAAT
*
86411022 AGCTTACTGTTTTCAGCTCATTGG
1 AGCTTACCG-TTTCAGCTCATTGG
*
86411046 AGCTTACCGTTTCAGCTCATTAG
1 AGCTTACCGTTTCAGCTCATTGG
* **
86411069 AGCTTACTGTTATCAGCTCAGGAGG
1 AGCTTACCGTT-TCAGCTCA-TTGG
86411094 AGCTTACCG
1 AGCTTACCG
86411103 ATCATGGCTC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 23 0.48
24 16 0.33
25 9 0.19
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (23 bp):
AGCTTACCGTTTCAGCTCATTGG
Found at i:86418776 original size:41 final size:41
Alignment explanation
Indices: 86418711--86418848 Score: 190
Period size: 41 Copynumber: 3.4 Consensus size: 41
86418701 GCAAATCAGA
*
86418711 ATAGCTTCGGCTAT-ATATGGCACTTAGTGTGCGAGACTGAG
1 ATAGCTTCGGCTATGA-AAGGCACTTAGTGTGCGAGACTGAG
* *
86418752 ATAGCTTCGGCTATGAAAGACACTTAGTGTGCGAGACTGTG
1 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGACTGAG
* * *
86418793 ATAGCTTCGACTATGAAAGGCACTTAGTGTGCGAGA-TTACA
1 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGACTGA-G
86418834 ATAGCTTCGGCTATG
1 ATAGCTTCGGCTATG
86418849 CTTTGGCACT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 1 0.01
41 84 0.98
42 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (41 bp):
ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGACTGAG
Found at i:86420120 original size:42 final size:42
Alignment explanation
Indices: 86420056--86420149 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
86420046 GCCTTGTTTT
86420056 CACACGGTCTATGACACGGGTGTGTCTAGTGGCCATGTGAGG
1 CACACGGTCTATGACACGGGTGTGTCTAGTGGCCATGTGAGG
* * * *
86420098 CACATGGTCTATGACATGGGTGTGTCTGGTGGCCGTGTGAGG
1 CACACGGTCTATGACACGGGTGTGTCTAGTGGCCATGTGAGG
86420140 CACACGGTCT
1 CACACGGTCT
86420150 GTTCACACTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.17, C:0.21, G:0.36, T:0.26
Consensus pattern (42 bp):
CACACGGTCTATGACACGGGTGTGTCTAGTGGCCATGTGAGG
Found at i:86422544 original size:37 final size:37
Alignment explanation
Indices: 86422487--86422589 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
86422477 CAAATAGTCC
* *
86422487 CCACGCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
86422524 CCACACGTAGTCATCAGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
86422561 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
86422590 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:86422790 original size:48 final size:49
Alignment explanation
Indices: 86422730--86423538 Score: 1400
Period size: 48 Copynumber: 16.9 Consensus size: 49
86422720 ATATACACAC
* *
86422730 ATCTCCTA-CATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86422778 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86422826 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86422874 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86422922 ATCTCATA-CATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86422970 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86423018 ATCTCATA-CATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86423066 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACAAATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86423114 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86423162 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86423210 ATCTCATA-CATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86423258 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86423306 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86423354 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86423402 ATCTCATA-CATATTTCACATTAGCCATTCCGCTTTATCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86423450 ATCTCATAT-ATATTTCACATTAGCTATTCGGCTTTACCACATATACAT
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86423498 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACA
86423539 CACATATATA
Statistics
Matches: 730, Mismatches: 18, Indels: 26
0.94 0.02 0.03
Matches are distributed among these distances:
47 3 0.00
48 726 0.99
49 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (49 bp):
ATCTCATATCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:86435994 original size:18 final size:18
Alignment explanation
Indices: 86435971--86436008 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86435961 ATTGAGACAA
86435971 TTATTTGATTGAAA-TAAT
1 TTATTT-ATTGAAATTAAT
*
86435989 TTATTTATTTAAATTAAT
1 TTATTTATTGAAATTAAT
86436007 TT
1 TT
86436009 TAAGATGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
TTATTTATTGAAATTAAT
Found at i:86443511 original size:17 final size:17
Alignment explanation
Indices: 86443491--86443534 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
86443481 TTTGAAAATG
*
86443491 TTATTTTTATCTCTTAT
1 TTATTTTTATCACTTAT
* * *
86443508 TTATTTTAATGACTTTT
1 TTATTTTTATCACTTAT
86443525 TTATTTTTAT
1 TTATTTTTAT
86443535 TTTTTTCCTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (17 bp):
TTATTTTTATCACTTAT
Found at i:86444216 original size:24 final size:21
Alignment explanation
Indices: 86444172--86444223 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 21
86444162 ACAATTTTTC
*
86444172 ATTGAAAGAAAAAATGCATGA
1 ATTGAAAGAAAAAATGAATGA
86444193 ATTGAATAGAAAAGAAATGAATGA
1 ATTGAA-AG-AAA-AAATGAATGA
*
86444217 TTTGAAA
1 ATTGAAA
86444224 TGGTTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 6 0.23
22 2 0.08
23 4 0.15
24 14 0.54
ACGTcount: A:0.56, C:0.02, G:0.19, T:0.23
Consensus pattern (21 bp):
ATTGAAAGAAAAAATGAATGA
Found at i:86444741 original size:14 final size:15
Alignment explanation
Indices: 86444716--86444745 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
86444706 CAATTTAATA
86444716 ATTTTTATTAAAATG
1 ATTTTTATTAAAATG
86444731 ATTTTTA-TAAAATG
1 ATTTTTATTAAAATG
86444745 A
1 A
86444746 ATTCTAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (15 bp):
ATTTTTATTAAAATG
Found at i:86446271 original size:32 final size:30
Alignment explanation
Indices: 86446213--86446276 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 30
86446203 CTCAAAAATA
*
86446213 TTTTAATTTTTTTTAAATTTTCAAAGTTTT
1 TTTTAATTTTTTTTAAATTTTCAAAGTATT
*
86446243 TTTTATATTTATTTTT-CATTTTCAAAAGTATT
1 TTTTA-ATTT-TTTTTAAATTTTC-AAAGTATT
86446275 TT
1 TT
86446277 ATATTTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 5 0.17
31 10 0.34
32 14 0.48
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.66
Consensus pattern (30 bp):
TTTTAATTTTTTTTAAATTTTCAAAGTATT
Found at i:86448274 original size:19 final size:19
Alignment explanation
Indices: 86448250--86448292 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
86448240 AAACAAAAAG
86448250 TAAATCAATTTTTACATTC
1 TAAATCAATTTTTACATTC
*
86448269 TAAATCAATTTTTGCATTC
1 TAAATCAATTTTTACATTC
86448288 TAAAT
1 TAAAT
86448293 GTTGGATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (19 bp):
TAAATCAATTTTTACATTC
Found at i:86452434 original size:27 final size:27
Alignment explanation
Indices: 86452396--86452451 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
86452386 CTTGGCTACC
86452396 CAAGCCTAGCCGAATGTACTATAAGCT
1 CAAGCCTAGCCGAATGTACTATAAGCT
86452423 CAAGCCTAGCCGAATGTACTATAAGCT
1 CAAGCCTAGCCGAATGTACTATAAGCT
86452450 CA
1 CA
86452452 TACTAGCCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (27 bp):
CAAGCCTAGCCGAATGTACTATAAGCT
Found at i:86457625 original size:22 final size:21
Alignment explanation
Indices: 86457590--86457647 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 21
86457580 TTTTTTAAAA
* *
86457590 TTTTATGAACTTTTT-ATATTT
1 TTTTTTGAATTTTTTGA-ATTT
86457611 TCTTTTTGAATTTTTTGAATTT
1 T-TTTTTGAATTTTTTGAATTT
86457633 TTAATTTTGAATTTT
1 TT--TTTTGAATTTT
86457648 AAAATTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
21 2 0.06
22 17 0.55
23 12 0.39
ACGTcount: A:0.22, C:0.03, G:0.07, T:0.67
Consensus pattern (21 bp):
TTTTTTGAATTTTTTGAATTT
Found at i:86457654 original size:31 final size:31
Alignment explanation
Indices: 86457582--86457657 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
86457572 CATGCTAATT
* *
86457582 TTTTAAAATTTTATGAACTTTTTATATTTTC
1 TTTTAAAATTTTTTGAACTTTTTATATTTTA
**
86457613 TTTTTGAATTTTTTGAA-TTTTTA-ATTTTGAA
1 TTTTAAAATTTTTTGAACTTTTTATATTTT--A
86457644 TTTTAAAATTTTTT
1 TTTTAAAATTTTTT
86457658 TATAAGTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
29 5 0.14
30 6 0.16
31 26 0.70
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (31 bp):
TTTTAAAATTTTTTGAACTTTTTATATTTTA
Found at i:86459326 original size:23 final size:23
Alignment explanation
Indices: 86459300--86459346 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
86459290 AAAAACTTTG
* *
86459300 AGATTTTATTTTTATGTAAATTT
1 AGATTTTATCTTTACGTAAATTT
86459323 AGATTTTATCTTTACGTAAATTT
1 AGATTTTATCTTTACGTAAATTT
86459346 A
1 A
86459347 AATTAATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (23 bp):
AGATTTTATCTTTACGTAAATTT
Found at i:86460054 original size:18 final size:17
Alignment explanation
Indices: 86460027--86460065 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
86460017 ATTCTTGATA
* *
86460027 TATATTTTTTAGTATTTT
1 TATATATTTTAAT-TTTT
86460045 TATATATTTTAATTTTT
1 TATATATTTTAATTTTT
86460062 TATA
1 TATA
86460066 ACATCATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TATATATTTTAATTTTT
Found at i:86460110 original size:10 final size:10
Alignment explanation
Indices: 86460095--86460123 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
86460085 ATATGAAACT
86460095 TAAAATTAAA
1 TAAAATTAAA
86460105 TAAAATTAAA
1 TAAAATTAAA
86460115 -AAAATTAAA
1 TAAAATTAAA
86460124 ATTTATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAATTAAA
Found at i:86460543 original size:21 final size:21
Alignment explanation
Indices: 86460517--86460558 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
86460507 TTTAAATAAT
86460517 ATCAACCAAAATTAAATTAGG
1 ATCAACCAAAATTAAATTAGG
86460538 ATCAACCAAAATTAAATTAGG
1 ATCAACCAAAATTAAATTAGG
86460559 GTGTGTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.14, G:0.10, T:0.24
Consensus pattern (21 bp):
ATCAACCAAAATTAAATTAGG
Found at i:86461441 original size:18 final size:17
Alignment explanation
Indices: 86461403--86461444 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
86461393 AAAAGTTATT
*
86461403 TTTACATATATTAATAA
1 TTTATATATATTAATAA
86461420 TTTATATATATTAATAAA
1 TTTATATATATTAAT-AA
86461438 TTTATAT
1 TTTATAT
86461445 TTTAAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTATATATATTAATAA
Found at i:86469971 original size:42 final size:42
Alignment explanation
Indices: 86469919--86470045 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 42
86469909 GTATGGGTTA
* *
86469919 TACTTTGGTTTATCTGATGATGCACTTACGTGCCAGTATGA-T
1 TACTTCGGTTTATCTAATGATGCACTTACGTGCCAGTAT-ATT
* *
86469961 TACTTCGGTTTAT-TAAGTGATGCATTTACGTGTCAGTATATT
1 TACTTCGGTTTATCTAA-TGATGCACTTACGTGCCAGTATATT
* * * * *
86470003 TGCTTCGATTTATCCAATGATGCACTTATGTGCTAGTATATT
1 TACTTCGGTTTATCTAATGATGCACTTACGTGCCAGTATATT
86470045 T
1 T
86470046 GTAACAATCT
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 3 0.04
42 66 0.93
43 2 0.03
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (42 bp):
TACTTCGGTTTATCTAATGATGCACTTACGTGCCAGTATATT
Found at i:86470743 original size:20 final size:20
Alignment explanation
Indices: 86470718--86470762 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
86470708 AGGGACTAAA
* *
86470718 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
86470738 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
86470758 ATGAA
1 ATGAA
86470763 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:86476308 original size:31 final size:32
Alignment explanation
Indices: 86476246--86476308 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
86476236 AAATGTTTAG
*
86476246 AATGAACTTAAACAAATAGTTGTCCAGATTCA
1 AATGAACTTAAACAAATAGTTGTCCAAATTCA
** *
86476278 AATGAACTTGGACAATTA-TTGTCCAAATTCA
1 AATGAACTTAAACAAATAGTTGTCCAAATTCA
86476309 TTCTCTATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 12 0.44
32 15 0.56
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (32 bp):
AATGAACTTAAACAAATAGTTGTCCAAATTCA
Found at i:86476372 original size:17 final size:16
Alignment explanation
Indices: 86476334--86476372 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
86476324 ATTATAAATT
*
86476334 TTTTTTATAAATTTTA
1 TTTTTTAGAAATTTTA
*
86476350 TATTTTAGAATATTTTA
1 TTTTTTAGAA-ATTTTA
86476367 TTTTTT
1 TTTTTT
86476373 TACCACGTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTTTAGAAATTTTA
Found at i:86478185 original size:22 final size:23
Alignment explanation
Indices: 86478160--86478205 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
86478150 CAATAAACGA
*
86478160 AATTAATATATTATATAAT-TTC
1 AATTAATATAATATATAATATTC
86478182 AATTAATATAATATATAATATTC
1 AATTAATATAATATATAATATTC
86478205 A
1 A
86478206 GTTACAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (23 bp):
AATTAATATAATATATAATATTC
Found at i:86481617 original size:37 final size:37
Alignment explanation
Indices: 86481576--86481649 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
86481566 AAAAGATTAT
86481576 GCTCATGATAAAAATTGAACCTTGTCTTACAAGGTAA
1 GCTCATGATAAAAATTGAACCTTGTCTTACAAGGTAA
86481613 GCTCATGATAAAAATTGAACCTTGTCTTACAAGGTAA
1 GCTCATGATAAAAATTGAACCTTGTCTTACAAGGTAA
86481650 ACTACTAAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (37 bp):
GCTCATGATAAAAATTGAACCTTGTCTTACAAGGTAA
Found at i:86482904 original size:21 final size:22
Alignment explanation
Indices: 86482850--86482906 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
86482840 TTAAAAATAT
*
86482850 TTTTTGTATTAATATCTAAATAA
1 TTTTT-TATTAATATCTAAACAA
* *
86482873 TTTTATGTTAA-ATCTAAACAA
1 TTTTTTATTAATATCTAAACAA
86482894 TTTTTTATTAATA
1 TTTTTTATTAATA
86482907 AAAAGCAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 18 0.64
22 6 0.21
23 4 0.14
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.53
Consensus pattern (22 bp):
TTTTTTATTAATATCTAAACAA
Found at i:86484804 original size:8 final size:8
Alignment explanation
Indices: 86484793--86484819 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
86484783 ATTAATCAAT
86484793 TAATTAAA
1 TAATTAAA
86484801 TAATTAAA
1 TAATTAAA
86484809 TAATTAAA
1 TAATTAAA
86484817 TAA
1 TAA
86484820 ATTTTAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TAATTAAA
Found at i:86484804 original size:16 final size:16
Alignment explanation
Indices: 86484785--86484819 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
86484775 TATAATCAAT
*
86484785 TAATCAATTAATTAAA
1 TAATCAAATAATTAAA
*
86484801 TAATTAAATAATTAAA
1 TAATCAAATAATTAAA
86484817 TAA
1 TAA
86484820 ATTTTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATCAAATAATTAAA
Found at i:86485662 original size:36 final size:36
Alignment explanation
Indices: 86485615--86485687 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
86485605 TGTACCAACA
*
86485615 TACCAACTTTTAGCTCACTATCTTTAAAATACATGT
1 TACCAACTTTTAGCTCACTATCTTGAAAATACATGT
86485651 TACCAACTTTTAGCTCACTATCTTGAAAATACATGT
1 TACCAACTTTTAGCTCACTATCTTGAAAATACATGT
86485687 T
1 T
86485688 TTCAATATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (36 bp):
TACCAACTTTTAGCTCACTATCTTGAAAATACATGT
Found at i:86486571 original size:15 final size:15
Alignment explanation
Indices: 86486551--86486597 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
86486541 TAAAAAGAGA
86486551 TTGTTAAAATATCTT
1 TTGTTAAAATATCTT
*
86486566 TTGTT---ATATC-A
1 TTGTTAAAATATCTT
86486577 TTGTTAAAATATCTT
1 TTGTTAAAATATCTT
86486592 TTGTTA
1 TTGTTA
86486598 TATCATCTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
11 5 0.19
12 5 0.19
14 5 0.19
15 11 0.42
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.55
Consensus pattern (15 bp):
TTGTTAAAATATCTT
Found at i:86486579 original size:26 final size:26
Alignment explanation
Indices: 86486550--86486603 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
86486540 CTAAAAAGAG
86486550 ATTGTTAAAATATCTTTTGTTATATC
1 ATTGTTAAAATATCTTTTGTTATATC
86486576 ATTGTTAAAATATCTTTTGTTATATC
1 ATTGTTAAAATATCTTTTGTTATATC
86486602 AT
1 AT
86486604 CTGTCCCAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.54
Consensus pattern (26 bp):
ATTGTTAAAATATCTTTTGTTATATC
Found at i:86490222 original size:17 final size:18
Alignment explanation
Indices: 86490200--86490235 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86490190 TAGTTGAACG
*
86490200 ATTTTT-ATAATTTTTTT
1 ATTTTTAATAATTTATTT
86490217 ATTTTTAATAATTTATTT
1 ATTTTTAATAATTTATTT
86490235 A
1 A
86490236 CTTTGAATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTAATAATTTATTT
Found at i:86497087 original size:21 final size:22
Alignment explanation
Indices: 86497063--86497105 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
86497053 TAAGTAAAGA
86497063 TAAACTC-TGCATAAGTCATAT
1 TAAACTCATGCATAAGTCATAT
86497084 TAAACTCATGCATAAGTCATAT
1 TAAACTCATGCATAAGTCATAT
86497106 ACCCATCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (22 bp):
TAAACTCATGCATAAGTCATAT
Found at i:86504115 original size:50 final size:53
Alignment explanation
Indices: 86504012--86504116 Score: 144
Period size: 50 Copynumber: 2.0 Consensus size: 53
86504002 TGAAGGGGAG
* *
86504012 ATGACTTGTTAAGGGGGAGTCTTTCTTCTTTTTTTTTTATGATAAATTTTATGAT
1 ATGACTTGTTAAGGGGGAGTC-TTCTTC-TTATTTTTGATGATAAATTTTATGAT
*
86504067 ATGAGTTGTTAAGGGGGAGTC-T-TTC-TATTTTTGATGATAAATTTTATGAT
1 ATGACTTGTTAAGGGGGAGTCTTCTTCTTATTTTTGATGATAAATTTTATGAT
86504117 GATTTTGAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
50 23 0.49
52 3 0.06
53 1 0.02
55 20 0.43
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.50
Consensus pattern (53 bp):
ATGACTTGTTAAGGGGGAGTCTTCTTCTTATTTTTGATGATAAATTTTATGAT
Found at i:86507780 original size:23 final size:23
Alignment explanation
Indices: 86507729--86507780 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
86507719 TTTTTTTTGG
*
86507729 TAAAAAAAATTTAGAAATACAAC
1 TAAAAAAAATTTAGAAAAACAAC
*
86507752 TTAAAAAAGATTCTA-AAAAAC-AC
1 -TAAAAAAAATT-TAGAAAAACAAC
86507775 TAAAAA
1 TAAAAA
86507781 CTTTAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 6 0.24
23 2 0.08
24 15 0.60
25 2 0.08
ACGTcount: A:0.65, C:0.10, G:0.04, T:0.21
Consensus pattern (23 bp):
TAAAAAAAATTTAGAAAAACAAC
Found at i:86508158 original size:11 final size:11
Alignment explanation
Indices: 86508142--86508166 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86508132 AAACAGACAT
86508142 AAAAAAAAGAA
1 AAAAAAAAGAA
86508153 AAAAAAAAGAA
1 AAAAAAAAGAA
86508164 AAA
1 AAA
86508167 GAAGCTATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:86508368 original size:17 final size:16
Alignment explanation
Indices: 86508346--86508395 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
86508336 TTTTTAAAAA
86508346 TATCAATTAAAATTTAT
1 TATCAA-TAAAATTTAT
*
86508363 TATC-A-AATATTTAT
1 TATCAATAAAATTTAT
86508377 TAAT-AATAAAATTTAT
1 T-ATCAATAAAATTTAT
86508393 TAT
1 TAT
86508396 AAAAATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.32
15 5 0.18
16 10 0.36
17 4 0.14
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (16 bp):
TATCAATAAAATTTAT
Found at i:86508402 original size:13 final size:14
Alignment explanation
Indices: 86508354--86508400 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
86508344 AATATCAATT
*
86508354 AAAATTTATTATCA
1 AAAATTTATTATAA
*
86508368 AATATTTATTAATAA
1 AAAATTTATT-ATAA
86508383 TAAAATTTATTATAA
1 -AAAATTTATTATAA
86508398 AAA
1 AAA
86508401 TTAAACTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 12 0.43
15 7 0.25
16 9 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (14 bp):
AAAATTTATTATAA
Found at i:86515624 original size:12 final size:12
Alignment explanation
Indices: 86515607--86515641 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
86515597 ATGGGGTAAG
*
86515607 ATCTGAATCTGT
1 ATCTGAATATGT
86515619 ATCTGAATATGT
1 ATCTGAATATGT
*
86515631 ATCTGATTATG
1 ATCTGAATATG
86515642 AAAATACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (12 bp):
ATCTGAATATGT
Found at i:86516370 original size:15 final size:16
Alignment explanation
Indices: 86516350--86516386 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
86516340 CCCGACAATC
*
86516350 ACATTCTC-AGTAATT
1 ACATTCTCAAGGAATT
86516365 ACATTC-CAAGGAATT
1 ACATTCTCAAGGAATT
86516380 ACATTCT
1 ACATTCT
86516387 ATTGGTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 1 0.05
15 18 0.95
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (16 bp):
ACATTCTCAAGGAATT
Found at i:86525652 original size:47 final size:47
Alignment explanation
Indices: 86525595--86525898 Score: 428
Period size: 47 Copynumber: 6.4 Consensus size: 47
86525585 ATTGATGTAC
* * *
86525595 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
86525642 AAGTATATATATATGTGATAGGGCCGAGTGGCGAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
86525691 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
86525738 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
86525785 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86525832 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86525879 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
86525899 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 191 0.81
49 45 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:86528355 original size:38 final size:38
Alignment explanation
Indices: 86528291--86528365 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
86528281 AATCCGAGTT
*
86528291 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
86528329 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
86528366 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:86528482 original size:40 final size:40
Alignment explanation
Indices: 86528418--86528724 Score: 465
Period size: 40 Copynumber: 7.7 Consensus size: 40
86528408 AGGTCTCGAC
*
86528418 GATG-ATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
86528457 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
86528497 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
86528537 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
86528577 GATATATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
86528616 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
86528656 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
86528696 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
86528725 ATCATGCTGG
Statistics
Matches: 247, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 41 0.17
40 206 0.83
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:86532138 original size:47 final size:47
Alignment explanation
Indices: 86532081--86532384 Score: 437
Period size: 47 Copynumber: 6.4 Consensus size: 47
86532071 ATTGATGTAC
* * *
86532081 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
86532128 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
86532177 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
86532224 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
86532271 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86532318 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86532365 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
86532385 TCCCGAAGGG
Statistics
Matches: 238, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 192 0.81
49 46 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:86543650 original size:47 final size:47
Alignment explanation
Indices: 86543307--86543646 Score: 554
Period size: 47 Copynumber: 7.2 Consensus size: 47
86543297 GTACAAGATA
*
86543307 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
86543354 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
86543401 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
86543448 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* *
86543495 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
** * *
86543542 TATATATGTGACAAGGCCTAATGGCTGATGTGATGGATGTGAAGGTG
1 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * * *
86543589 TATATATGTGATAAGGCCGAATGGCCAATATGATGGATGTGAAAGTG
1 TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
86543636 TATAAATGTGA
1 TATATATGTGA
86543647 TAAGTCCCGA
Statistics
Matches: 275, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 275 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:86554235 original size:35 final size:34
Alignment explanation
Indices: 86554124--86554334 Score: 106
Period size: 35 Copynumber: 6.0 Consensus size: 34
86554114 TCTTTTTATG
* * * * *
86554124 GAAGCGAGCCTTCCGTAACCCTTCCTTCATGTGTG
1 GAAGCAAGCCTTCTGTAAGCCTTCC-CCATGTGTA
* * * *
86554159 GAAGCAAACC-TCTATAAGCCTCTCCCCATATGTTG
1 GAAGCAAGCCTTCTGTAAGCCT-TCCCCATGTG-TA
* *
86554194 GGAGCAAGCCTTCTGTAAGCTTTCCTCCATGTGTA
1 GAAGCAAGCCTTCTGTAAGCCTTCC-CCATGTGTA
* * *
86554229 GAAGCAAGCAC-CCTGTAAGCATTCCCCCATGTACTA
1 GAAGCAAGC-CTTCTGTAAGCCTT-CCCCATGT-GTA
* * **
86554265 TAA-CCAGTCCTTCCATAAG-CTTCCCCTTATGTGCTA
1 GAAGCAAG-CCTTCTGTAAGCCTTCCCC--ATGTG-TA
* *
86554301 GGAGCAAGCCTTCTGTAAACCTTCCCCCATGTGT
1 GAAGCAAGCCTTCTGTAAGCCTT-CCCCATGTGT
86554335 GGCCCCACAT
Statistics
Matches: 131, Mismatches: 30, Indels: 30
0.69 0.16 0.16
Matches are distributed among these distances:
34 17 0.13
35 56 0.43
36 48 0.37
37 6 0.05
38 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.27
Consensus pattern (34 bp):
GAAGCAAGCCTTCTGTAAGCCTTCCCCATGTGTA
Found at i:86557729 original size:16 final size:16
Alignment explanation
Indices: 86557710--86557740 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86557700 CTTCTTCACT
86557710 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
86557726 TACTTACTTACTTAA
1 TACTCACTTACTTAA
86557741 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:86557746 original size:20 final size:20
Alignment explanation
Indices: 86557707--86557746 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
86557697 AAACTTCTTC
* *
86557707 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
86557727 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
86557747 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:86558119 original size:55 final size:53
Alignment explanation
Indices: 86557932--86558186 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
86557922 ACACAGGTAC
* * * *
86557932 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
* * * *
86557981 CTTACCATTGCCATGTCTCGATATGGTCTTACATGGTATCCTTACCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
* * * *
86558034 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G-AA
*
86558089 CTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
* * * *
86558142 CCTTACCAATTGTCATGCCTTGGCATGGTCTTGCATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
86558187 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 36 0.21
50 1 0.01
52 2 0.01
53 46 0.27
54 10 0.06
55 74 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
Found at i:86558123 original size:108 final size:110
Alignment explanation
Indices: 86557979--86558179 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
86557969 ATCCTTTTGA
* *
86557979 AACTTACCATTGCCATGTCTCGATATGGTCTTACATGGTATCCTTACCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTACCTTA-GAAACCTCACCAA
86558042 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
86558087 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTACCTTAGAAACCTCACCAAT
* *
86558152 TGTCATGCCTTGGCATGGTCTTGCATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
86558180 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGGTATCCTTACCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:86581435 original size:7 final size:7
Alignment explanation
Indices: 86581423--86581492 Score: 50
Period size: 7 Copynumber: 9.0 Consensus size: 7
86581413 TAAAAATTTT
86581423 TAAAAAA
1 TAAAAAA
86581430 TAAAAATA
1 TAAAAA-A
*
86581438 TTAAAAAT
1 -TAAAAAA
86581446 TAAAAAA
1 TAAAAAA
86581453 TTAATAAAA
1 -TAA-AAAA
86581462 TATAAAATA
1 TA-AAAA-A
*
86581471 TTAAAAAT
1 -TAAAAAA
*
86581479 TAAAAAT
1 TAAAAAA
86581486 TAAAAAA
1 TAAAAAA
86581493 ATCATAATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
7 25 0.48
8 9 0.17
9 16 0.31
10 2 0.04
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
TAAAAAA
Found at i:86581441 original size:16 final size:16
Alignment explanation
Indices: 86581412--86581494 Score: 89
Period size: 16 Copynumber: 5.1 Consensus size: 16
86581402 TAAAAATTAC
*
86581412 ATAAAAATTTTTAAAAA
1 ATAAAAA-TATTAAAAA
86581429 ATAAAAATATTAAAAA
1 ATAAAAATATTAAAAA
*
86581445 TTAAAAA-ATTAATAAA
1 ATAAAAATATTAA-AAA
86581461 ATATAAAATATTAAAAA
1 ATA-AAAATATTAAAAA
* *
86581478 TTAAAAAT-TAAAAAA
1 ATAAAAATATTAAAAA
86581493 AT
1 AT
86581495 CATAATATAT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
15 12 0.21
16 24 0.42
17 16 0.28
18 5 0.09
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATAAAAATATTAAAAA
Found at i:86581469 original size:33 final size:31
Alignment explanation
Indices: 86581422--86581492 Score: 117
Period size: 32 Copynumber: 2.3 Consensus size: 31
86581412 ATAAAAATTT
86581422 TTAAAAAATA-AAAATATTAAAAATTAAAAAA
1 TTAAAAAATATAAAATATTAAAAATT-AAAAA
86581453 TTAATAAAATATAAAATATTAAAAATTAAAAA
1 TTAA-AAAATATAAAATATTAAAAATTAAAAA
86581485 TTAAAAAA
1 TTAAAAAA
86581493 ATCATAATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
31 8 0.21
32 15 0.39
33 15 0.39
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (31 bp):
TTAAAAAATATAAAATATTAAAAATTAAAAA
Found at i:86581490 original size:6 final size:7
Alignment explanation
Indices: 86581425--86581491 Score: 71
Period size: 8 Copynumber: 8.7 Consensus size: 7
86581415 AAAATTTTTA
*
86581425 AAAAATA
1 AAAAATT
86581432 AAAATATT
1 AAAA-ATT
86581440 AAAAATT
1 AAAAATT
86581447 AAAAAATT
1 -AAAAATT
86581455 AATAAAATAT
1 -A-AAAAT-T
86581465 AAAATATT
1 AAAA-ATT
86581473 AAAAATT
1 AAAAATT
86581480 AAAAATT
1 AAAAATT
86581487 AAAAA
1 AAAAA
86581492 AATCATAATA
Statistics
Matches: 54, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
7 22 0.41
8 23 0.43
9 8 0.15
10 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:86581505 original size:33 final size:33
Alignment explanation
Indices: 86581424--86581505 Score: 123
Period size: 33 Copynumber: 2.5 Consensus size: 33
86581414 AAAAATTTTT
86581424 AAAAAATA-AAAATATTAAAAATTAAAAAATTA
1 AAAAAATATAAAATATTAAAAATTAAAAAATTA
*
86581456 ATAAAATATAAAATATTAAAAATT-AAAAATTA
1 AAAAAATATAAAATATTAAAAATTAAAAAATTA
*
86581488 AAAAAATCATAATATATT
1 AAAAAAT-ATAAAATATT
86581506 TTTTAAAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
32 21 0.47
33 24 0.53
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (33 bp):
AAAAAATATAAAATATTAAAAATTAAAAAATTA
Found at i:86581537 original size:24 final size:25
Alignment explanation
Indices: 86581496--86581542 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
86581486 TAAAAAAATC
*
86581496 ATAATATATTTTTTAAAATTATAAA
1 ATAATATATTTTTAAAAATTATAAA
86581521 ATAAT-TATTTTTAAAAATTATA
1 ATAATATATTTTTAAAAATTATA
86581543 TGTGACATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
ATAATATATTTTTAAAAATTATAAA
Found at i:86582701 original size:20 final size:20
Alignment explanation
Indices: 86582676--86582740 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
86582666 GTTTTATGAG
86582676 TTTTAAT-ATTTTTTGGGTTT
1 TTTTAATAATTTTTT-GGTTT
* * *
86582696 TTTTAATGATATATTTGG-AT
1 TTTTAATAAT-TTTTTGGTTT
*
86582716 TTTTAATAATTTTTTAGTTT
1 TTTTAATAATTTTTTGGTTT
86582736 TTTTA
1 TTTTA
86582741 TTTTTTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
19 5 0.14
20 23 0.64
21 4 0.11
22 4 0.11
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (20 bp):
TTTTAATAATTTTTTGGTTT
Found at i:86590400 original size:39 final size:39
Alignment explanation
Indices: 86590348--86590433 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
86590338 GGAGATCATT
*
86590348 TTTGTTAGCGGTAAGTCAGTTCTCTGTGTTTGGGTATCA
1 TTTGTTAGTGGTAAGTCAGTTCTCTGTGTTTGGGTATCA
86590387 TTTGTTAGTGGTAAGTCAGTTCTCTGTGTTTGGGTATCA
1 TTTGTTAGTGGTAAGTCAGTTCTCTGTGTTTGGGTATCA
86590426 TTT-TTAGT
1 TTTGTTAGT
86590434 CTCTTAGAGT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 5 0.11
39 41 0.89
ACGTcount: A:0.15, C:0.10, G:0.27, T:0.48
Consensus pattern (39 bp):
TTTGTTAGTGGTAAGTCAGTTCTCTGTGTTTGGGTATCA
Found at i:86597919 original size:21 final size:21
Alignment explanation
Indices: 86597893--86597947 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
86597883 TCCCGTCAGC
*
86597893 ATAAGACGCATGAGGCCAACT
1 ATAAGACGCATGAGGCCAAAT
86597914 ATAAGACGCATGAGGCCAAAT
1 ATAAGACGCATGAGGCCAAAT
**
86597935 ATCCGACGCATGA
1 ATAAGACGCATGA
86597948 CATTGAGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.15
Consensus pattern (21 bp):
ATAAGACGCATGAGGCCAAAT
Found at i:86601392 original size:13 final size:12
Alignment explanation
Indices: 86601373--86601406 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
86601363 AGGGTAGGAT
86601373 ATCTGATTTCTG
1 ATCTGATTTCTG
86601385 ATTCTGATTTCTG
1 A-TCTGATTTCTG
86601398 ATCTGATTT
1 ATCTGATTT
86601407 GCATATCTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (12 bp):
ATCTGATTTCTG
Found at i:86611106 original size:21 final size:21
Alignment explanation
Indices: 86611081--86611126 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
86611071 ATGGCCTGAG
*
86611081 ACACGGGCATGTCCCATGGCC
1 ACACGGGCATGTCCCAAGGCC
*
86611102 ACACGGGCGTGTCCCAAGGCC
1 ACACGGGCATGTCCCAAGGCC
86611123 ACAC
1 ACAC
86611127 AAGTGTGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.39, G:0.28, T:0.11
Consensus pattern (21 bp):
ACACGGGCATGTCCCAAGGCC
Found at i:86611134 original size:21 final size:21
Alignment explanation
Indices: 86611090--86611134 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
86611080 GACACGGGCA
* **
86611090 TGTCCCATGGCCACACGGGCG
1 TGTCCCAAGGCCACACAAGCG
*
86611111 TGTCCCAAGGCCACACAAGTG
1 TGTCCCAAGGCCACACAAGCG
86611132 TGT
1 TGT
86611135 GATCCCTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (21 bp):
TGTCCCAAGGCCACACAAGCG
Found at i:86614692 original size:87 final size:84
Alignment explanation
Indices: 86614562--86614813 Score: 245
Period size: 87 Copynumber: 2.9 Consensus size: 84
86614552 TTCTAATTTT
* * * * * * *
86614562 GAAACAAAATTAAAATCGAATAAAATCTATTAAACCGCTGGAATAAATCTCGAAATAGATTTTAT
1 GAAACAAAATAAAAATGGAATAAAAT-TTTTGAACGGCGGGAATAAATC-CGAAACAGATTTTAT
*
86614627 TTAATTTTAATTTCTTGTTTG
64 TTAATTTTAATTTCTCGTTTG
* * *
86614648 GCAACAAAATAAAAAATGGAATAAAATTTGTTGAACGGCGGGAATAAATCCTGTAACATATTTTA
1 GAAACAAAAT-AAAAATGGAATAAAATTT-TTGAACGGCGGGAATAAATCC-GAAACAGATTTTA
*
86614713 TTTAATTTTAA-TACTCGTTTG
63 TTTAATTTTAATTTCTCGTTTG
* * * * *
86614734 GAAACAAAATCAAAGATGAAATAAAATCTATTTGAGCGGAGGGAATAAATCCCAAAACAGATTTT
1 GAAACAAAAT-AAAAATGGAATAAAAT-T-TTTGAACGGCGGGAATAAAT-CCGAAACAGATTTT
* *
86614799 ATTCAGTTTTAATTT
62 ATTTAATTTTAATTT
86614814 TTACTTTCAA
Statistics
Matches: 135, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
86 42 0.31
87 89 0.66
88 4 0.03
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (84 bp):
GAAACAAAATAAAAATGGAATAAAATTTTTGAACGGCGGGAATAAATCCGAAACAGATTTTATTT
AATTTTAATTTCTCGTTTG
Found at i:86620263 original size:22 final size:22
Alignment explanation
Indices: 86620224--86620280 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
86620214 GGAGAGAGAG
* * * *
86620224 CTTGAAATGTGGAGGAAGCTTC
1 CTTGAATTGTGAAAGAAGCTTA
*
86620246 CTTGAATTGTGAAAGAAGGTTA
1 CTTGAATTGTGAAAGAAGCTTA
*
86620268 TTTGAATTGTGAA
1 CTTGAATTGTGAA
86620281 GGGAAGGTGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (22 bp):
CTTGAATTGTGAAAGAAGCTTA
Found at i:86622062 original size:22 final size:22
Alignment explanation
Indices: 86622035--86622080 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
86622025 TGATTGCTTG
86622035 AAATGATTATTTGTATGTTGCT
1 AAATGATTATTTGTATGTTGCT
*
86622057 AAATGATTATTTGTATGTTTCT
1 AAATGATTATTTGTATGTTGCT
86622079 AA
1 AA
86622081 CTCATATCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.50
Consensus pattern (22 bp):
AAATGATTATTTGTATGTTGCT
Found at i:86628406 original size:24 final size:24
Alignment explanation
Indices: 86628337--86628419 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 24
86628327 ATAATATTTG
*
86628337 AAATATATACATAAAATAGTA--A
1 AAATATATACATAATATAGTAGTA
*
86628359 AAATATATA-ACTAGTA-A-T-GTTA
1 AAATATATACA-TAATATAGTAG-TA
86628381 AAATATATACATAATATAGTAGTA
1 AAATATATACATAATATAGTAGTA
*
86628405 AAATATTTACATAAT
1 AAATATATACATAAT
86628420 GTGTACATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
20 1 0.02
21 2 0.04
22 26 0.53
23 2 0.04
24 17 0.35
25 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (24 bp):
AAATATATACATAATATAGTAGTA
Found at i:86628618 original size:16 final size:17
Alignment explanation
Indices: 86628595--86628645 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 17
86628585 AAGTATAATA
86628595 ATAAAATAATGA-TATAT
1 ATAAAATAAT-ACTATAT
86628612 A-AAAATAATACTATAT
1 ATAAAATAATACTATAT
*
86628628 ATAAAA-AGTA-TATAT
1 ATAAAATAATACTATAT
86628643 ATA
1 ATA
86628646 CACGTATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 9 0.29
16 17 0.55
17 5 0.16
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (17 bp):
ATAAAATAATACTATAT
Found at i:86629029 original size:27 final size:27
Alignment explanation
Indices: 86628954--86629045 Score: 75
Period size: 27 Copynumber: 3.4 Consensus size: 27
86628944 AACATATAAA
* * **
86628954 AATACAATATTAAATGATATATATACGT
1 AATATAATATTAAA-AATATATATATAT
*
86628982 AATAT-ATA-TAAAAA-ATGTATATAT
1 AATATAATATTAAAAATATATATATAT
*
86629006 AATATAATATTAAAAATATTTATATAGT
1 AATATAATATTAAAAATATATATATA-T
86629034 -ATATACATATTA
1 AATATA-ATATTA
86629046 GAGATAATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
24 12 0.23
25 4 0.08
26 10 0.19
27 16 0.30
28 11 0.21
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.39
Consensus pattern (27 bp):
AATATAATATTAAAAATATATATATAT
Found at i:86629370 original size:58 final size:56
Alignment explanation
Indices: 86629289--86629419 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 56
86629279 TAATGTTAAA
*
86629289 AATAATTATTAATAATATTACATAA-ATATATACATATATATATTAAAGATAAATGCAT
1 AATAA-TATTAA-AATATTACATAATATATATACATA-ATATATTAAAGATAAATACAT
*
86629347 AATAATATTAAAAGTATGTACATAATATATATACATAATATATTAAAGATATATACAT
1 AATAATATTAAAA-TAT-TACATAATATATATACATAATATATTAAAGATAAATACAT
*
86629405 AAT-ATAATAAAATAT
1 AATAATATTAAAATAT
86629420 ATGAATAATA
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
56 5 0.07
57 17 0.25
58 34 0.51
59 11 0.16
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.37
Consensus pattern (56 bp):
AATAATATTAAAATATTACATAATATATATACATAATATATTAAAGATAAATACAT
Found at i:86629383 original size:13 final size:12
Alignment explanation
Indices: 86629368--86629495 Score: 62
Period size: 11 Copynumber: 11.2 Consensus size: 12
86629358 AAGTATGTAC
86629368 ATAATATATATA
1 ATAATATATATA
86629380 CATAATATAT-TA
1 -ATAATATATATA
*
86629392 A-AGATATATA-C
1 ATA-ATATATATA
86629403 ATAATATA-ATA
1 ATAATATATATA
*
86629414 A-AATATAT-GA
1 ATAATATATATA
*
86629424 ATAATAGGATATA
1 ATAATA-TATATA
* *
86629437 AAAAAATATATA
1 ATAATATATATA
86629449 CATAA-ATATA-A
1 -ATAATATATATA
86629460 A-AA-ATATATA
1 ATAATATATATA
* * *
86629470 AT-ATTTAAAAA
1 ATAATATATATA
*
86629481 ATAATATACATA
1 ATAATATATATA
86629493 ATA
1 ATA
86629496 TAAGAGTATT
Statistics
Matches: 87, Mismatches: 15, Indels: 27
0.67 0.12 0.21
Matches are distributed among these distances:
9 7 0.08
10 14 0.16
11 25 0.29
12 24 0.28
13 17 0.20
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (12 bp):
ATAATATATATA
Found at i:86629392 original size:35 final size:34
Alignment explanation
Indices: 86629344--86629421 Score: 99
Period size: 35 Copynumber: 2.3 Consensus size: 34
86629334 AAGATAAATG
*
86629344 CATAATAATATTAAA-AGTATGTACATAATATATATA
1 CATAAT-ATATTAAAGA-TATATACATAATATA-ATA
86629380 CATAATATATTAAAGATATATACATAATATAATA
1 CATAATATATTAAAGATATATACATAATATAATA
86629414 -A-AATATAT
1 CATAATATAT
86629422 GAATAATAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
32 7 0.17
33 1 0.03
34 3 0.08
35 22 0.55
36 7 0.17
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (34 bp):
CATAATATATTAAAGATATATACATAATATAATA
Found at i:86629398 original size:22 final size:21
Alignment explanation
Indices: 86629373--86629497 Score: 91
Period size: 22 Copynumber: 5.8 Consensus size: 21
86629363 TGTACATAAT
86629373 ATATATACATAATATATTAAA
1 ATATATACATAATATATTAAA
*
86629394 GATATATACATAATATAATAAA
1 -ATATATACATAATATATTAAA
*
86629416 ATATATGA-ATAATAGGATATAAAAAA
1 ATATAT-ACATAAT---ATAT--TAAA
86629442 ATATATACATAA-ATA-TAAA
1 ATATATACATAATATATTAAA
*
86629461 A-A-ATATATAATAT-TTAAAAA
1 ATATATACATAATATATT--AAA
86629481 ATAATATACATAATATA
1 AT-ATATACATAATATA
86629498 AGAGTATTTA
Statistics
Matches: 82, Mismatches: 6, Indels: 28
0.71 0.05 0.24
Matches are distributed among these distances:
17 7 0.09
18 4 0.05
19 4 0.05
20 4 0.05
21 11 0.13
22 25 0.30
23 10 0.12
24 3 0.04
25 1 0.01
26 13 0.16
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
ATATATACATAATATATTAAA
Found at i:86629428 original size:43 final size:42
Alignment explanation
Indices: 86629368--86629498 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 42
86629358 AAGTATGTAC
* * *
86629368 ATAATATATATACATAATATATTAAAGATATATACATAATATA
1 ATAAAATATATA-ATAATATATAAAAAATATATACATAATATA
86629411 ATAAAATATATGAATAATAGGATATAAAAAAATATATACATAAATATA
1 ATAAAATATAT-AATAAT---ATAT-AAAAAATATATACAT-AATATA
86629459 A-AAAATATATAAT-AT-T-TAAAAAATAATATACATAATATA
1 ATAAAATATATAATAATATATAAAAAAT-ATATACATAATATA
86629498 A
1 A
86629499 GAGTATTTAA
Statistics
Matches: 78, Mismatches: 3, Indels: 18
0.79 0.03 0.18
Matches are distributed among these distances:
39 14 0.18
40 9 0.12
41 1 0.01
43 15 0.19
44 1 0.01
45 2 0.03
46 7 0.09
47 22 0.28
48 7 0.09
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (42 bp):
ATAAAATATATAATAATATATAAAAAATATATACATAATATA
Found at i:86629445 original size:58 final size:58
Alignment explanation
Indices: 86629326--86629447 Score: 133
Period size: 58 Copynumber: 2.1 Consensus size: 58
86629316 ATATACATAT
* * * * * *
86629326 ATATATTAAAGATAAATGCATAATAATATTAAAAGTATGTACATAATATATATACATA
1 ATATATTAAAGATAAATACATAATAATAATAAAAATATGTACATAATAGATATAAAAA
*
86629384 ATATATTAAAGATATATACATAAT-ATAATAAAATATATG-A-ATAATAGGATATAAAAAA
1 ATATATTAAAGATAAATACATAATAATAATAAAA-ATATGTACATAATA-GATAT-AAAAA
86629442 ATATAT
1 ATATAT
86629448 ACATAAATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
56 6 0.11
57 13 0.24
58 35 0.65
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.34
Consensus pattern (58 bp):
ATATATTAAAGATAAATACATAATAATAATAAAAATATGTACATAATAGATATAAAAA
Done.