Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 260 of 332
Found at i:86889266 original size:14 final size:14
Alignment explanation
Indices: 86889247--86889276 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
86889237 GAGAATTATC
86889247 TAAAAAGATGGAAT
1 TAAAAAGATGGAAT
86889261 TAAAAAGATGGAAT
1 TAAAAAGATGGAAT
86889275 TA
1 TA
86889277 GCCTTGAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (14 bp):
TAAAAAGATGGAAT
Found at i:86890166 original size:18 final size:18
Alignment explanation
Indices: 86890143--86890192 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
86890133 TAAAATAGGC
86890143 TATATATTATTTTAATAT
1 TATATATTATTTTAATAT
86890161 TATATATTATTTT--TAT
1 TATATATTATTTTAATAT
86890177 TA-A-ATTATATTTAATA
1 TATATATTAT-TTTAATA
86890193 ATAATTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.17
15 4 0.14
16 5 0.17
17 2 0.07
18 13 0.45
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATATTATTTTAATAT
Found at i:86890177 original size:16 final size:17
Alignment explanation
Indices: 86890143--86890236 Score: 60
Period size: 15 Copynumber: 5.9 Consensus size: 17
86890133 TAAAATAGGC
86890143 TATATATTATTTTAATAT
1 TATATATTATTTT-ATAT
86890161 TATATATTATTTT-TAT
1 TATATATTATTTTATAT
86890177 TA-A-ATTATATTTA-AT
1 TATATATTAT-TTTATAT
* * * *
86890192 AATA-ATTATATTAAAA
1 TATATATTATTTTATAT
**
86890208 TAT-TATTAAATTAT-T
1 TATATATTATTTTATAT
86890223 TAT-TATTATTTTAT
1 TATATATTATTTTAT
86890237 TATATTAGAT
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
14 5 0.08
15 22 0.35
16 22 0.35
18 13 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATATATTATTTTATAT
Found at i:86890187 original size:26 final size:24
Alignment explanation
Indices: 86890156--86890230 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
86890146 ATATTATTTT
86890156 AATATTATATATTATTTTTATTAA
1 AATATTATATATTATTTTTATTAA
* * *
86890180 ATTATATT-TAATAATAATTATATTAA
1 A--ATATTAT-ATATTATTTTTATTAA
*
86890206 AATATTATTAAATTATTTATTATTA
1 AATATTA-TATATTATTT-TTATTA
86890231 TTTTATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
24 6 0.16
25 7 0.18
26 25 0.66
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
AATATTATATATTATTTTTATTAA
Found at i:86892290 original size:27 final size:27
Alignment explanation
Indices: 86892260--86892351 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
86892250 AGCATAGCTG
* *
86892260 CCAGAAACAGTGAA-TGTAGCAAAGCCA
1 CCAGAATCAGT-AATTGTGGCAAAGCCA
*
86892287 CCAGTATCAGTAATTGTGGCAAAGCCA
1 CCAGAATCAGTAATTGTGGCAAAGCCA
* *
86892314 CCAGTATCAGTAATTGTGGCATAGCCA
1 CCAGAATCAGTAATTGTGGCAAAGCCA
86892341 CCA-ATATCAGT
1 CCAGA-ATCAGT
86892352 GAATGTGACA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 2 0.03
27 56 0.97
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGAATCAGTAATTGTGGCAAAGCCA
Found at i:86892358 original size:27 final size:27
Alignment explanation
Indices: 86892278--86892351 Score: 130
Period size: 27 Copynumber: 2.7 Consensus size: 27
86892268 AGTGAATGTA
86892278 GCAAAGCCACCAGTATCAGTAATTGTG
1 GCAAAGCCACCAGTATCAGTAATTGTG
86892305 GCAAAGCCACCAGTATCAGTAATTGTG
1 GCAAAGCCACCAGTATCAGTAATTGTG
* *
86892332 GCATAGCCACCAATATCAGT
1 GCAAAGCCACCAGTATCAGT
86892352 GAATGTGACA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (27 bp):
GCAAAGCCACCAGTATCAGTAATTGTG
Found at i:86892532 original size:27 final size:26
Alignment explanation
Indices: 86892501--86892654 Score: 98
Period size: 27 Copynumber: 5.7 Consensus size: 26
86892491 TATGACACAT
86892501 AAGGGCATACTTG-TCATTTTACCCTAC
1 AAGGGCATAC--GATCATTTTACCCTAC
*
86892528 AAGGGCATTACGATCATTTTACCTTAC
1 AAGGGCA-TACGATCATTTTACCCTAC
* * * *
86892555 -AGGGCATTATGGTTATTTTACCTTAC
1 AAGGGCA-TACGATCATTTTACCCTAC
** * *
86892581 GGGGGCATTACGGTCATTTTATCCTAC
1 AAGGGCA-TACGATCATTTTACCCTAC
*
86892608 GAA-GGCATTACGATCATTTTACCTTAC
1 -AAGGGCA-TACGATCATTTTACCCTAC
* * *
86892635 AGGGGTATTACGGTCATTTT
1 AAGGGCA-TACGATCATTTT
86892655 TATCTATTAG
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
26 25 0.24
27 77 0.73
28 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (26 bp):
AAGGGCATACGATCATTTTACCCTAC
Found at i:86892633 original size:54 final size:53
Alignment explanation
Indices: 86892514--86892654 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 53
86892504 GGCATACTTG
* * * * * *
86892514 TCATTTTACCCTACAAGGGCATTACGATCATTTTACCTTACAGGGCATTATGG
1 TCATTTTACCTTACAGGGGCATTACGGTCATTTTACCTTACAAGGCATTACGA
* *
86892567 TTATTTTACCTTACGGGGGCATTACGGTCATTTTATCC-TACGAAGGCATTACGA
1 TCATTTTACCTTACAGGGGCATTACGGTCATTTTA-CCTTAC-AAGGCATTACGA
*
86892621 TCATTTTACCTTACAGGGGTATTACGGTCATTTT
1 TCATTTTACCTTACAGGGGCATTACGGTCATTTT
86892655 TATCTATTAG
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
53 33 0.44
54 42 0.56
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (53 bp):
TCATTTTACCTTACAGGGGCATTACGGTCATTTTACCTTACAAGGCATTACGA
Found at i:86905354 original size:43 final size:43
Alignment explanation
Indices: 86905300--86905470 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 43
86905290 ATATCGTACA
* *
86905300 ATGCCAA-TGTCCCAGACGTAGTCTTACATGTAATCATATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATG-AATCACATATCG
*
86905343 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAATCAAATA-CG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACATGAATCACATATCG
* * * * * *
86905384 ATGCCGA-TGTCTCAAACATGGTCTTACACGTAATCACATATCA
1 ATGCCAACTGTCCCAGACGTGGTCTTACATG-AATCACATATCG
* *
86905427 ATGCCAAC-ATCCCAGACGTGGTTTTACATGAATACACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACATGAAT-CACATATCG
86905470 A
1 A
86905471 AAATCCTATG
Statistics
Matches: 104, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
41 25 0.24
42 21 0.20
43 57 0.55
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACATGAATCACATATCG
Found at i:86905407 original size:41 final size:43
Alignment explanation
Indices: 86905320--86905432 Score: 133
Period size: 41 Copynumber: 2.7 Consensus size: 43
86905310 CCCAGACGTA
* *
86905320 GTCTTACATGTAATCATATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAGG
* *
86905363 GTCTTACATG-AATCAAATA-CGATGCCGA-TGTCTCAAACATG
1 GTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAAACAGG
* * *
86905404 GTCTTACACGTAATCACATATCAATGCCA
1 GTCTTACATGTAATCAAATATCGATGCCA
86905433 ACATCCCAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
41 26 0.43
42 18 0.30
43 16 0.27
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAGG
Found at i:86913014 original size:20 final size:21
Alignment explanation
Indices: 86912975--86913014 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86912965 GTTATAATGA
86912975 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTGTTGCCCTT
*
86912996 CCACACGGGCGTG-TGCCCT
1 CCACACGAGCGTGTTGCCCT
86913015 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGAGCGTGTTGCCCTT
Found at i:86917631 original size:18 final size:18
Alignment explanation
Indices: 86917608--86917644 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86917598 GGGCTTATAT
86917608 AAGCCAAGTGAAAATTTG
1 AAGCCAAGTGAAAATTTG
86917626 AAGCCAAGTGAAAATTTG
1 AAGCCAAGTGAAAATTTG
86917644 A
1 A
86917645 CTAAGCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.22
Consensus pattern (18 bp):
AAGCCAAGTGAAAATTTG
Found at i:86918155 original size:43 final size:42
Alignment explanation
Indices: 86918107--86918260 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 42
86918097 TGATTTCGTA
* * *
86918107 TAAGACCACGTCTGGGACGTTGGCATCGATTTGAGATTACGTG
1 TAAGACCACGTCTGAGACGTTGGCATCGATTT-TGATTACATG
* * * *
86918150 TAAGACCATGTCTGAGTCATTGGCATCG-TATTTGATTTCATG
1 TAAGACCACGTCTGAGACGTTGGCATCGAT-TTTGATTACATG
*
86918192 TAAGACC-CTGTCTGAGACAG-TGGCATCAATATTTGATTACATG
1 TAAGACCAC-GTCTGAGAC-GTTGGCATCGAT-TTTGATTACATG
* * *
86918235 TAAGACCACGTTTGGGACGTAGGCAT
1 TAAGACCACGTCTGAGACGTTGGCAT
86918261 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 31 0.34
43 58 0.64
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TAAGACCACGTCTGAGACGTTGGCATCGATTTTGATTACATG
Found at i:86918204 original size:42 final size:42
Alignment explanation
Indices: 86918107--86918242 Score: 157
Period size: 43 Copynumber: 3.2 Consensus size: 42
86918097 TGATTTCGTA
* * * *
86918107 TAAGACCACGTCTGGGACGTTGGCATCG-ATTTGAGATTACGTG
1 TAAGACCATGTCTGAGACATTGGCATCGTATTT--GATTACATG
* *
86918150 TAAGACCATGTCTGAGTCATTGGCATCGTATTTGATTTCATG
1 TAAGACCATGTCTGAGACATTGGCATCGTATTTGATTACATG
* * *
86918192 TAAGACCCTGTCTGAGACAGTGGCATCAATATTTGATTACATG
1 TAAGACCATGTCTGAGACATTGGCATC-GTATTTGATTACATG
86918235 TAAGACCA
1 TAAGACCA
86918243 CGTTTGGGAC
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 31 0.39
43 44 0.56
44 4 0.05
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TAAGACCATGTCTGAGACATTGGCATCGTATTTGATTACATG
Found at i:86925654 original size:43 final size:43
Alignment explanation
Indices: 86925606--86925759 Score: 188
Period size: 43 Copynumber: 3.6 Consensus size: 43
86925596 TGATTTCGTA
86925606 TAAGACCACGTCTGGGACATTGGCATCGAT-TTTAGATTACATG
1 TAAGACCACGTCTGGGACATTGGCATCGATATTT-GATTACATG
** * ***
86925649 TAAGACCTTGTTTGGGACATTGGCATCG-TATTTGATTTTGTG
1 TAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACATG
* * *
86925691 TAAGACC-CTGTCTGAGACAGTGGCATCGATATTTGATTACATA
1 TAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACATG
86925734 TAAGACCACGTCTGGGACATTGGCAT
1 TAAGACCACGTCTGGGACATTGGCAT
86925760 TGTACAAGCT
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 30 0.33
43 60 0.66
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACATG
Found at i:86925715 original size:42 final size:43
Alignment explanation
Indices: 86925590--86925728 Score: 131
Period size: 43 Copynumber: 3.3 Consensus size: 43
86925580 TAGGATTTCT
* * * * *
86925590 GATATGTGATTTCGTATAAGACCAC-GTCTGGGACATTGGCATC
1 GATATTTGATTTTGTGTAAGACC-CTGTCTGAGACAGTGGCATC
*** * * * *
86925633 GAT-TTTAGATTACATGTAAGACCTTGTTTGGGACATTGGCATC
1 GATATTT-GATTTTGTGTAAGACCCTGTCTGAGACAGTGGCATC
86925676 G-TATTTGATTTTGTGTAAGACCCTGTCTGAGACAGTGGCATC
1 GATATTTGATTTTGTGTAAGACCCTGTCTGAGACAGTGGCATC
86925718 GATATTTGATT
1 GATATTTGATT
86925729 ACATATAAGA
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
42 33 0.42
43 46 0.58
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (43 bp):
GATATTTGATTTTGTGTAAGACCCTGTCTGAGACAGTGGCATC
Found at i:86925739 original size:85 final size:85
Alignment explanation
Indices: 86925596--86925759 Score: 224
Period size: 85 Copynumber: 1.9 Consensus size: 85
86925586 TTCTGATATG
* * * ** *
86925596 TGATTTCGTATAAGACCACGTCTGGGACATTGGCATCGATTTTAGATTACATGTAAGACCTTGTT
1 TGATTTCGTATAAGACCACGTCTGAGACAGTGGCATCGATTTTAGATTACATATAAGACCACGTC
86925661 TGGGACATTGGCATCGTATT
66 TGGGACATTGGCATCGTATT
* *
86925681 TGATTTTGTGTAAGACC-CTGTCTGAGACAGTGGCATCGATATTT-GATTACATATAAGACCACG
1 TGATTTCGTATAAGACCAC-GTCTGAGACAGTGGCATCGAT-TTTAGATTACATATAAGACCACG
86925744 TCTGGGACATTGGCAT
64 TCTGGGACATTGGCAT
86925760 TGTACAAGCT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
84 1 0.01
85 65 0.94
86 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (85 bp):
TGATTTCGTATAAGACCACGTCTGAGACAGTGGCATCGATTTTAGATTACATATAAGACCACGTC
TGGGACATTGGCATCGTATT
Found at i:86932848 original size:11 final size:11
Alignment explanation
Indices: 86932832--86932856 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86932822 TTAGTGAAAG
86932832 TTTAAGTGATT
1 TTTAAGTGATT
86932843 TTTAAGTGATT
1 TTTAAGTGATT
86932854 TTT
1 TTT
86932857 GTTTATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (11 bp):
TTTAAGTGATT
Found at i:86933394 original size:29 final size:29
Alignment explanation
Indices: 86933361--86933430 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
86933351 GTATCTTACC
*
86933361 GATTTGGCTTCGGATCATACATATCGGAT
1 GATTTGGCTTCGGACCATACATATCGGAT
* *
86933390 GATTTGGCTTCGGGCCATGCATATCGGAT
1 GATTTGGCTTCGGACCATACATATCGGAT
86933419 GATTTGGCTTCG
1 GATTTGGCTTCG
86933431 AGCCATGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.34
Consensus pattern (29 bp):
GATTTGGCTTCGGACCATACATATCGGAT
Found at i:86942474 original size:20 final size:18
Alignment explanation
Indices: 86942436--86942471 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86942426 GGAGTGTCCC
*
86942436 AAGCCACATGGGCGTGTG
1 AAGCCACACGGGCGTGTG
86942454 AAGCCACACGGGCGTGTG
1 AAGCCACACGGGCGTGTG
86942472 TGATCACACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.25, G:0.39, T:0.14
Consensus pattern (18 bp):
AAGCCACACGGGCGTGTG
Found at i:86958787 original size:63 final size:63
Alignment explanation
Indices: 86958709--86958841 Score: 239
Period size: 63 Copynumber: 2.1 Consensus size: 63
86958699 ACTGTCTAAG
*
86958709 ATGGGGTAAATTATACATGCATCTAACCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
1 ATGGGGTAAATTATACATACATCTAACCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
* *
86958772 ATGGGGTAAATTATACATACATCTAACCACTTAATAATTTCTTTTTTCACCACATCTTTCATA
1 ATGGGGTAAATTATACATACATCTAACCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
86958835 ATGGGGT
1 ATGGGGT
86958842 TCAGTTTCTG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (63 bp):
ATGGGGTAAATTATACATACATCTAACCACTAAATAATTTCTTTTTTCACCACATCCTTCATA
Found at i:86959230 original size:30 final size:30
Alignment explanation
Indices: 86959194--86959250 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
86959184 TGAGTTAGCC
*
86959194 TCAAGCAAAGCTTAATGTTTCCCCCTAACT
1 TCAAGCAAAGCTTAATATTTCCCCCTAACT
*
86959224 TCAAGCAAAGCTTAATATTTCTCCCTA
1 TCAAGCAAAGCTTAATATTTCCCCCTA
86959251 CCTCATCCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.32
Consensus pattern (30 bp):
TCAAGCAAAGCTTAATATTTCCCCCTAACT
Found at i:86961339 original size:22 final size:22
Alignment explanation
Indices: 86961291--86961347 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
86961281 TTTATTAAAT
* * *
86961291 TTGTAA-AAAATTATAAATATC
1 TTGTAATAAAATAAAAAATATA
86961312 TT-TAATAAAATAAAAAATATA
1 TTGTAATAAAATAAAAAATATA
86961333 TTGTAAT-AAATAAAA
1 TTGTAATAAAATAAAA
86961348 TTAATTTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 3 0.10
21 24 0.77
22 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (22 bp):
TTGTAATAAAATAAAAAATATA
Found at i:86968110 original size:61 final size:61
Alignment explanation
Indices: 86968041--86968162 Score: 163
Period size: 61 Copynumber: 2.0 Consensus size: 61
86968031 GGGCTTTGAT
* ** *
86968041 ATGTATTTATTTGGGCTTTGGCCCATATCCTTTATACTTACTCTATGATAGATGCAGTTCA
1 ATGTATTTATTTGGGCTATGAACCATATCCTTTATACTAACTCTATGATAGATGCAGTTCA
* * * * *
86968102 ATGTATTTATTTGGGCTATGAACCATATCTTTTGTACTAACTCTATGGTGGATGGAGTTCA
1 ATGTATTTATTTGGGCTATGAACCATATCCTTTATACTAACTCTATGATAGATGCAGTTCA
86968163 GTTGACTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.42
Consensus pattern (61 bp):
ATGTATTTATTTGGGCTATGAACCATATCCTTTATACTAACTCTATGATAGATGCAGTTCA
Found at i:86972757 original size:57 final size:58
Alignment explanation
Indices: 86972696--86972810 Score: 146
Period size: 58 Copynumber: 2.0 Consensus size: 58
86972686 ATCCTGCTTC
* *
86972696 CAACATATGCTC-ATAAGAGATTA-ATCAAGATTACCTA-TCCGGGCTAAATCCTATCTA
1 CAACACATGCTCAATAAG-GATTATATCAAGATTACC-AGTCCAGGCTAAATCCTATCTA
* * *
86972753 CAACACATGCTCAATAAGGCTTATATCACGATTACCAGTCCAGGCTAAATCCTTTCTA
1 CAACACATGCTCAATAAGGATTATATCAAGATTACCAGTCCAGGCTAAATCCTATCTA
86972811 TAATGAGGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
57 16 0.32
58 34 0.68
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (58 bp):
CAACACATGCTCAATAAGGATTATATCAAGATTACCAGTCCAGGCTAAATCCTATCTA
Found at i:86975915 original size:18 final size:18
Alignment explanation
Indices: 86975888--86975924 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86975878 AGCATATCCT
*
86975888 TTAGAGCCTAAATTACCC
1 TTAGAACCTAAATTACCC
86975906 TTAGAACCTAAATTACCC
1 TTAGAACCTAAATTACCC
86975924 T
1 T
86975925 CTCGGACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (18 bp):
TTAGAACCTAAATTACCC
Found at i:86988777 original size:24 final size:24
Alignment explanation
Indices: 86988745--86988844 Score: 137
Period size: 24 Copynumber: 4.0 Consensus size: 24
86988735 ATTGAGCATA
86988745 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
86988769 ATGCCATGGACTTATTTTACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
86988793 CATATTGCCATGGACTTTTTTCACTTAG
1 ---A-TGCCATGGACTTATTTCACTTAG
*
86988821 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
86988845 CACAATGTCA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
24 44 0.66
25 1 0.01
27 1 0.01
28 21 0.31
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:86988796 original size:52 final size:52
Alignment explanation
Indices: 86988739--86988851 Score: 181
Period size: 52 Copynumber: 2.2 Consensus size: 52
86988729 TTTCTCATTG
*
86988739 AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTTACTT
1 AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCACTT
* * *
86988791 AGCATATTGCCATGGACTTTTTTCACTTAGATGCCATGGTCTTATTTCACTT
1 AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCACTT
*
86988843 AGCACAATG
1 AGCATAATG
86988852 TCATATCTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (52 bp):
AGCATAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCACTT
Found at i:86991046 original size:17 final size:17
Alignment explanation
Indices: 86991024--86991070 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
86991014 TTTAGTACAC
86991024 ATTGTCACTGCATTTTT
1 ATTGTCACTGCATTTTT
* * *
86991041 ATTGTCATTACATATTT
1 ATTGTCACTGCATTTTT
*
86991058 A-TGTCAGTGCATT
1 ATTGTCACTGCATT
86991071 GGGGACAATG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.49
Consensus pattern (17 bp):
ATTGTCACTGCATTTTT
Found at i:86996692 original size:22 final size:22
Alignment explanation
Indices: 86996664--86996705 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
86996654 ATGTAAGTTC
86996664 GTATGTTTAAATAACATGTTTT
1 GTATGTTTAAATAACATGTTTT
*
86996686 GTATGTTTAAATAACGTGTT
1 GTATGTTTAAATAACATGTT
86996706 AATGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.05, G:0.17, T:0.48
Consensus pattern (22 bp):
GTATGTTTAAATAACATGTTTT
Found at i:86997444 original size:17 final size:16
Alignment explanation
Indices: 86997422--86997453 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
86997412 TTATAGATTA
86997422 TTGGAAGCTCGATCGGC
1 TTGGAAGCTCG-TCGGC
86997439 TTGGAAGCTCGTCGG
1 TTGGAAGCTCGTCGG
86997454 AGGCCTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.16, C:0.22, G:0.38, T:0.25
Consensus pattern (16 bp):
TTGGAAGCTCGTCGGC
Found at i:87014607 original size:46 final size:47
Alignment explanation
Indices: 87014469--87014633 Score: 128
Period size: 46 Copynumber: 3.6 Consensus size: 47
87014459 TAAGTTGTTG
* * * *
87014469 ATGCCATGTCCCAGACATGGTTTTACACT-GAC-ACATCT--AGTAGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTAGCCTACGTCTCAAG--GCCA
* * *
87014515 ATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCA
1 ATGCCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCA
* * *
87014561 ATG-TATGTCCCAGACATGTCTTACACTAGCACT-CGTCTTAATGCCA
1 ATGCCATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCAAGGCCA
* *
87014607 ATGCCATATCTCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACAT-GTCTTACA
87014634 TTGGCTCTCA
Statistics
Matches: 98, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
44 9 0.09
45 15 0.15
46 52 0.53
47 12 0.12
48 10 0.10
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCA
Found at i:87014777 original size:22 final size:22
Alignment explanation
Indices: 87014749--87014792 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
87014739 ACGAGAACTC
87014749 TACTATCTCTATTATCATCATA
1 TACTATCTCTATTATCATCATA
87014771 TACTATCTCTATTATCATCATA
1 TACTATCTCTATTATCATCATA
87014793 CTTTCTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (22 bp):
TACTATCTCTATTATCATCATA
Found at i:87014799 original size:20 final size:21
Alignment explanation
Indices: 87014749--87014799 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
87014739 ACGAGAACTC
87014749 TACTATCTCTATTATCATCATA
1 TACTATCTCTATTATCATCA-A
87014771 TACTATCTCTATTATCATC-A
1 TACTATCTCTATTATCATCAA
*
87014791 TACTTTCTC
1 TACTATCTC
87014800 AATTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 9 0.32
22 19 0.68
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.47
Consensus pattern (21 bp):
TACTATCTCTATTATCATCAA
Found at i:87016553 original size:15 final size:15
Alignment explanation
Indices: 87016533--87016563 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
87016523 CCTTTTAACG
87016533 GTAACTATTCCAACA
1 GTAACTATTCCAACA
*
87016548 GTAACTTTTCCAACA
1 GTAACTATTCCAACA
87016563 G
1 G
87016564 CTAGTATGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (15 bp):
GTAACTATTCCAACA
Found at i:87016726 original size:6 final size:7
Alignment explanation
Indices: 87016685--87016759 Score: 75
Period size: 7 Copynumber: 10.7 Consensus size: 7
87016675 CTTCAATCCC
*
87016685 CAATTTC
1 CAATTTT
87016692 CAATTTT
1 CAATTTT
87016699 -ATATTTT
1 CA-ATTTT
*
87016706 CAATCTT
1 CAATTTT
87016713 CAAATTTT
1 C-AATTTT
87016721 -AATTTT
1 CAATTTT
87016727 CAATTTT
1 CAATTTT
87016734 CAA-TTT
1 CAATTTT
87016740 CAAGTTTT
1 CAA-TTTT
*
87016748 CAATTCT
1 CAATTTT
87016755 CAATT
1 CAATT
87016760 ATTTTTTTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
6 13 0.22
7 33 0.57
8 12 0.21
ACGTcount: A:0.31, C:0.16, G:0.01, T:0.52
Consensus pattern (7 bp):
CAATTTT
Found at i:87023024 original size:26 final size:28
Alignment explanation
Indices: 87022981--87023038 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 28
87022971 AATAAAAATT
87022981 ATAAAAACTAAAATTAAAATAATA-TTAA
1 ATAAAAACTAAAATTAAAA-AATACTTAA
* *
87023009 ATAAAAA-TGAAA-TAAAAAGTACTTAA
1 ATAAAAACTAAAATTAAAAAATACTTAA
87023035 ATAA
1 ATAA
87023039 GATAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 3 0.11
26 13 0.48
27 4 0.15
28 7 0.26
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (28 bp):
ATAAAAACTAAAATTAAAAAATACTTAA
Found at i:87030341 original size:64 final size:64
Alignment explanation
Indices: 87030240--87030367 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
87030230 AGTTTTGTGT
87030240 GTTTGATTGCATTTACGTTTGGTAACGCCTTGTACCCTATTCCAGTATCGAATATAGGTAAAGA
1 GTTTGATTGCATTTACGTTTGGTAACGCCTTGTACCCTATTCCAGTATCGAATATAGGTAAAGA
** ** *
87030304 GTTTGATTGCATTTTTGTTTGGTAACGCCTTGTACCCTATTCTGGTATCGAATATAGTTAAAGA
1 GTTTGATTGCATTTACGTTTGGTAACGCCTTGTACCCTATTCCAGTATCGAATATAGGTAAAGA
87030368 ATGTTACATT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (64 bp):
GTTTGATTGCATTTACGTTTGGTAACGCCTTGTACCCTATTCCAGTATCGAATATAGGTAAAGA
Found at i:87037012 original size:46 final size:46
Alignment explanation
Indices: 87036872--87037035 Score: 174
Period size: 46 Copynumber: 3.5 Consensus size: 46
87036862 TGCACTAGTA
* *
87036872 TAAGACATGTCTAGGACATGCATCGGCCACATT---ATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGG---CATTGAGACGAGAGCCAGTG
*
87036918 TAAGATCATGTCTGGGACATGCCATCGGCATTGAGACGAGAGCTAGTG
1 TAAGA-CATGTCTGGGACATG-CATCGGCATTGAGACGAGAGCCAGTG
* * *
87036966 TAAGACATGTCTGGGGCATGCATCGGCCTTGAGATGTA-AGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATTGAGACG-AGAGCCAGTG
* *
87037012 TAATACATGTTTGGGACATGCATC
1 TAAGACATGTCTGGGACATGCATC
87037036 AGCTACGAGA
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
45 4 0.04
46 47 0.46
47 29 0.28
48 22 0.22
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGCCAGTG
Found at i:87037046 original size:46 final size:47
Alignment explanation
Indices: 87036872--87037268 Score: 168
Period size: 47 Copynumber: 8.4 Consensus size: 47
87036862 TGCACTAGTA
* * * *
87036872 TAAGA-CATGTCTAGGACATGCATCGGCCA-CATTATG-AGAGCCAGTG
1 TAAGACCATGTCTGGGACATGCATCGGCTATGA-GATGTA-AGCCAGTG
* * *
87036918 TAAGATCATGTCTGGGACATGCCATCGGC-ATTGAGACG-AGAGCTAGTG
1 TAAGACCATGTCTGGGACATG-CATCGGCTA-TGAGATGTA-AGCCAGTG
*
87036966 TAAGA-CATGTCTGGGGCATGCATCGGCCT-TGAGATGTAAGCCAGTG
1 TAAGACCATGTCTGGGACATGCATCGG-CTATGAGATGTAAGCCAGTG
* * * * *
87037012 TAATA-CATGTTTGGGACATGCATCAGCTACGAGATGT--GTCAGTG
1 TAAGACCATGTCTGGGACATGCATCGGCTATGAGATGTAAGCCAGTG
* * * * * *
87037056 TAAGACCATGTATGGGACATGGCATTGACACGTAT-AGATGT--GTCAATA
1 TAAGACCATGTCTGGGACAT-GCATCG--GC-TATGAGATGTAAGCCAGTG
* * * * *
87037104 TAAGACCATGTCT-GGACATGTCATTGGC-ACAGATATGTGAGACTAGTG
1 TAAGACCATGTCTGGGACATG-CATCGGCTA-TGAGATGTAAG-CCAGTG
* * * * *
87037152 TAAGACCATATCTGGGACATGGCATCGGC-CT-CGATTTCGATAGTCAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGGCTATGAGATGT--A-AGCCAGTG
* * * *
87037201 TAAGACAATGTCTGAGACATGGCATCGACT-TGATGGATG-AA-CAAGTG
1 TAAGACCATGTCTGGGACAT-GCATCGGCTATGA--GATGTAAGCCAGTG
*
87037248 TAACACCATGTCTGGGACATG
1 TAAGACCATGTCTGGGACATG
87037269 GCATTGGCAT
Statistics
Matches: 272, Mismatches: 51, Indels: 56
0.72 0.13 0.15
Matches are distributed among these distances:
43 1 0.00
44 10 0.04
45 21 0.08
46 59 0.22
47 67 0.25
48 62 0.23
49 46 0.17
50 3 0.01
52 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGCATCGGCTATGAGATGTAAGCCAGTG
Found at i:87039535 original size:42 final size:42
Alignment explanation
Indices: 87039417--87039567 Score: 115
Period size: 42 Copynumber: 3.6 Consensus size: 42
87039407 AGTTATCATG
* * * * * * *
87039417 TAAGACCATATCCGAGATATGGCATTGATACGAGATTTCGTC
1 TAAGACCATATCTGGGACATGGCATCGATATGAGAATTCGTA
** * ** *
87039459 TAAGACCACCTCTAGGACATGGTGTCGAAATGAGAATTCGTA
1 TAAGACCATATCTGGGACATGGCATCGATATGAGAATTCGTA
* * * * *
87039501 TAAGACCATATCTGGGATATGGCATCGATGTGAG-ATCCCATG
1 TAAGACCATATCTGGGACATGGCATCGATATGAGAAT-TCGTA
*
87039543 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATATCTGGGACATGGCAT
87039568 TGGCATCTTA
Statistics
Matches: 82, Mismatches: 26, Indels: 2
0.75 0.24 0.02
Matches are distributed among these distances:
41 2 0.02
42 80 0.98
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (42 bp):
TAAGACCATATCTGGGACATGGCATCGATATGAGAATTCGTA
Found at i:87041842 original size:5 final size:5
Alignment explanation
Indices: 87041832--87041869 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
87041822 AAGAAAATGT
87041832 TATTA TATTA TATTA TATTA -A-TA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
87041870 GTTTAATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 27 0.87
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:87041856 original size:13 final size:13
Alignment explanation
Indices: 87041840--87041864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87041830 GTTATTATAT
87041840 TATATTATATTAA
1 TATATTATATTAA
87041853 TATATTATATTA
1 TATATTATATTA
87041865 TATTAGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATTATATTAA
Found at i:87041856 original size:18 final size:18
Alignment explanation
Indices: 87041835--87041869 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
87041825 AAAATGTTAT
87041835 TATATTATATTATATTAA
1 TATATTATATTATATTAA
87041853 TATATTATATTATATTA
1 TATATTATATTATATTA
87041870 GTTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATTATATTATATTAA
Found at i:87041858 original size:23 final size:23
Alignment explanation
Indices: 87041832--87041877 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
87041822 AAGAAAATGT
87041832 TATTATATTATATTA-TATTAATA
1 TATTATATTATATTAGT-TTAATA
87041855 TATTATATTATATTAGTTTAATA
1 TATTATATTATATTAGTTTAATA
87041878 ATAATAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 21 0.95
24 1 0.05
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TATTATATTATATTAGTTTAATA
Found at i:87043332 original size:31 final size:31
Alignment explanation
Indices: 87043294--87043355 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
87043284 GTGCGCAGGT
*
87043294 TAGGTTAAAGTCAGACTGATGATTCAGCATC
1 TAGGTTAAAGTCAGACTAATGATTCAGCATC
*
87043325 TAGGTTAAAGTCAGGCTAATGATTCAGCATC
1 TAGGTTAAAGTCAGACTAATGATTCAGCATC
87043356 CATCAGAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (31 bp):
TAGGTTAAAGTCAGACTAATGATTCAGCATC
Found at i:87043720 original size:20 final size:21
Alignment explanation
Indices: 87043681--87043720 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
87043671 AGTTTTGACA
*
87043681 TGTTTTAGATGTATTTGAATG
1 TGTTTTAGATGTAGTTGAATG
*
87043702 TGTTTTAGAT-TGGTTGAAT
1 TGTTTTAGATGTAGTTGAAT
87043721 AAATGATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (21 bp):
TGTTTTAGATGTAGTTGAATG
Found at i:87043974 original size:23 final size:21
Alignment explanation
Indices: 87043934--87043976 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
87043924 ATGTTTATGG
*
87043934 CCACACGGGTGTGTCCCTTGA
1 CCACACGGGTGTGACCCTTGA
87043955 CCACACGGGCGTGTGACCCTTG
1 CCACAC-GG-GTGTGACCCTTG
87043977 TAGCTAGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 11 0.58
ACGTcount: A:0.14, C:0.35, G:0.30, T:0.21
Consensus pattern (21 bp):
CCACACGGGTGTGACCCTTGA
Found at i:87044108 original size:19 final size:20
Alignment explanation
Indices: 87044071--87044108 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
87044061 CTTGAAGGCT
*
87044071 TATGATTAAATTATGATGTG
1 TATGATTAAATGATGATGTG
*
87044091 TATG-TTAAATGATTATGT
1 TATGATTAAATGATGATGT
87044109 AAATGTTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.47
Consensus pattern (20 bp):
TATGATTAAATGATGATGTG
Found at i:87052054 original size:63 final size:63
Alignment explanation
Indices: 87051987--87052123 Score: 168
Period size: 63 Copynumber: 2.2 Consensus size: 63
87051977 TCTTTCGCTA
* * **
87051987 CATCATCACCTTCAGT-TCTGGTTTATTTTTCACAACCACCACAGCACGTACAATCATTCCCTG
1 CATCAACACCTTCAGTAT-TGGTTTATTTTACACAACCACCACAGCACACACAATCATTCCCTG
* ** * * *
87052050 CATCAACACGTTTTGTATTTGTTTATTTTACACAAGCACCACAGCACACACAATCATTCTCTG
1 CATCAACACCTTCAGTATTGGTTTATTTTACACAACCACCACAGCACACACAATCATTCCCTG
87052113 CATCAACACCT
1 CATCAACACCT
87052124 ACTCTAGGGA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
63 61 0.98
64 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (63 bp):
CATCAACACCTTCAGTATTGGTTTATTTTACACAACCACCACAGCACACACAATCATTCCCTG
Found at i:87057376 original size:38 final size:38
Alignment explanation
Indices: 87057333--87057409 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
87057323 TTTCAAATTA
*
87057333 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAACACCACGTT
* ** *
87057371 ACATGTTTAATTGTGGTATATCCACTTAACACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAACACCACGTT
87057409 A
1 A
87057410 ATGAATCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAACACCACGTT
Found at i:87057400 original size:84 final size:85
Alignment explanation
Indices: 87057294--87057452 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
87057284 GGCTAACATG
* * * * *
87057294 TAATTGTGGTATAAGCACTTAACGCCAC-TT-TTCAAATTAACATGTATAACCGTGGCATATCCA
1 TAATTGTGGTATAACCACTTAACACCACGTTAAT-AAATCAACATATATAACCGTGGCATATCCA
87057357 CTTAGCACCACGTTACATGTT
65 CTTAGCACCACGTTACATGTT
* * * *
87057378 TAATTGTGGTATATCCACTTAACACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAATTGTGGTATAACCACTTAACACCACGTTAATAAATCAACATATATAACCGTGGCATATCCAC
*
87057443 TTAGGACCAC
66 TTAGCACCAC
87057453 ATTAATGAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
84 25 0.40
85 37 0.59
86 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (85 bp):
TAATTGTGGTATAACCACTTAACACCACGTTAATAAATCAACATATATAACCGTGGCATATCCAC
TTAGCACCACGTTACATGTT
Found at i:87057458 original size:47 final size:47
Alignment explanation
Indices: 87057382--87057551 Score: 214
Period size: 47 Copynumber: 3.6 Consensus size: 47
87057372 CATGTTTAAT
* *
87057382 TGTGGTATATCCACTTAACACCACGTTAATGAATCAATATATGTAAC
1 TGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
* * *
87057429 CGTGGCATATCCACTTAGGACCACATTAATGAATCAATATATGTAAC
1 TGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
* * * * *
87057476 TGTAGCATATCCATTTAGCACCACGTTACATGTATCAATATGTGTAAT
1 TGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAAC
* * *
87057524 TGTGGTATATCCACTTAACACCATGTTA
1 TGTGGCATATCCACTTAGCACCACGTTA
87057552 CACATACAAC
Statistics
Matches: 104, Mismatches: 18, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
47 65 0.62
48 39 0.38
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (47 bp):
TGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
Found at i:87059837 original size:15 final size:15
Alignment explanation
Indices: 87059814--87059853 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
87059804 GAAGCCCAGA
87059814 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
87059829 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
87059844 ATAAGGAAAT
1 ATAAGGAAAT
87059854 TCCATTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.10, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:87062921 original size:14 final size:15
Alignment explanation
Indices: 87062902--87062931 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
87062892 TCACATATCT
87062902 AACTCATA-ATTCAA
1 AACTCATATATTCAA
87062916 AACTCATATATTCAA
1 AACTCATATATTCAA
87062931 A
1 A
87062932 TTTCGGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (15 bp):
AACTCATATATTCAA
Found at i:87085758 original size:33 final size:32
Alignment explanation
Indices: 87085705--87085766 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
87085695 TAAAAGAATA
*
87085705 TTTAACTATAAAAAATTTAAAATAATTATCAT
1 TTTAACTAAAAAAAATTTAAAATAATTATCAT
* *
87085737 TTTATCTAAAAAATAATTTAAATTAATTAT
1 TTTAACTAAAAAA-AATTTAAAATAATTAT
87085767 ATAATTCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 11 0.42
33 15 0.58
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (32 bp):
TTTAACTAAAAAAAATTTAAAATAATTATCAT
Found at i:87086012 original size:21 final size:21
Alignment explanation
Indices: 87085988--87086041 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
87085978 TACCATTGTT
*
87085988 TCTAATCTCACCGCTACATTA
1 TCTAATCTCACCGCTACAGTA
* *
87086009 TCTAATCTTACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
87086030 ACTAATCTCACC
1 TCTAATCTCACC
87086042 ACCACAGCTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.31, G:0.06, T:0.33
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:87087791 original size:41 final size:41
Alignment explanation
Indices: 87087695--87087812 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
87087685 TAAAACGCAA
* * * * *
87087695 AGCAATGGCGGTGTTTTTGGTAAAACACCGCTAAAA-ACTG
1 AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGACAG
87087735 AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGACAG
1 AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGACAG
*
87087776 AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAG
1 AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAG
87087813 TCATATAACT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 32 0.45
41 39 0.55
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.21
Consensus pattern (41 bp):
AGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGACAG
Found at i:87088456 original size:24 final size:24
Alignment explanation
Indices: 87088429--87088477 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
87088419 CGTATATTTA
*
87088429 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
87088453 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
87088477 T
1 T
87088478 GTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:87088777 original size:7 final size:7
Alignment explanation
Indices: 87088767--87088815 Score: 80
Period size: 7 Copynumber: 6.9 Consensus size: 7
87088757 ATTTTAAGGT
87088767 TTATGGA
1 TTATGGA
87088774 TTATGGA
1 TTATGGA
87088781 TTATGGA
1 TTATGGA
87088788 TTATGGA
1 TTATGGA
*
87088795 TTATGGGT
1 TTAT-GGA
87088803 TTATGGA
1 TTATGGA
87088810 TTATGG
1 TTATGG
87088816 TTTACAGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
7 33 0.85
8 6 0.15
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (7 bp):
TTATGGA
Found at i:87088828 original size:36 final size:36
Alignment explanation
Indices: 87088760--87088839 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
87088750 AGTTACTATT
**
87088760 TTAA-GGTTTATGGATTATGGATTATGGATTATGGA
1 TTAAGGGTTTATGGATTATGGATTACAGATTATGGA
* * * *
87088795 TTATGGGTTTATGGATTATGGTTTACAGTTTATGGT
1 TTAAGGGTTTATGGATTATGGATTACAGATTATGGA
87088831 TTAAGGGTT
1 TTAAGGGTT
87088840 GGGGTTTAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 3 0.08
36 34 0.92
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (36 bp):
TTAAGGGTTTATGGATTATGGATTACAGATTATGGA
Found at i:87088832 original size:7 final size:7
Alignment explanation
Indices: 87088759--87088932 Score: 73
Period size: 7 Copynumber: 24.6 Consensus size: 7
87088749 GAGTTACTAT
*
87088759 TTTAAGG
1 TTTATGG
87088766 TTTATGG
1 TTTATGG
*
87088773 ATTATGG
1 TTTATGG
*
87088780 ATTATGG
1 TTTATGG
*
87088787 ATTATGG
1 TTTATGG
*
87088794 ATTATGGG
1 TTTAT-GG
87088802 TTTATGG
1 TTTATGG
*
87088809 ATTATGG
1 TTTATGG
**
87088816 TTTACAG
1 TTTATGG
87088823 TTTATGG
1 TTTATGG
*
87088830 TTTAAGG
1 TTTATGG
* **
87088837 GTTGGGG
1 TTTATGG
*
87088844 TTTAAGG
1 TTTATGG
87088851 TTTA-GG
1 TTTATGG
*
87088857 TGTTAGGG
1 T-TTATGG
*
87088865 GTTATGG
1 TTTATGG
* *
87088872 GTTAGGG
1 TTTATGG
* *
87088879 GTTAGGG
1 TTTATGG
*
87088886 GTTATGG
1 TTTATGG
*
87088893 GTTATGG
1 TTTATGG
*
87088900 ATTTAAGG
1 -TTTATGG
*
87088908 GTTAT-G
1 TTTATGG
*
87088914 TTGTATGA
1 TT-TATGG
*
87088922 TTTAGGG
1 TTTATGG
87088929 TTTA
1 TTTA
87088933 GGGGATAAAA
Statistics
Matches: 133, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
6 5 0.04
7 113 0.85
8 15 0.11
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.44
Consensus pattern (7 bp):
TTTATGG
Found at i:87088893 original size:21 final size:21
Alignment explanation
Indices: 87088824--87088896 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 21
87088814 GGTTTACAGT
* *
87088824 TTATGGTTTAAGGGTT-GGGG
1 TTATGGGTTAGGGGTTAGGGG
* * *
87088844 TTTAAGGTTTAGGTGTTAGGGG
1 -TTATGGGTTAGGGGTTAGGGG
87088866 TTATGGGTTAGGGGTTAGGGG
1 TTATGGGTTAGGGGTTAGGGG
87088887 TTATGGGTTA
1 TTATGGGTTA
87088897 TGGATTTAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 41 0.91
22 4 0.09
ACGTcount: A:0.16, C:0.00, G:0.44, T:0.40
Consensus pattern (21 bp):
TTATGGGTTAGGGGTTAGGGG
Found at i:87089092 original size:15 final size:14
Alignment explanation
Indices: 87089054--87089106 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
87089044 GTTTGCAGGT
*
87089054 AAAATGTTTTCTGG
1 AAAATGATTTCTGG
* *
87089068 AAAATAATTTCTTGA
1 AAAATGATTTC-TGG
*
87089083 AAAATGATTTATGG
1 AAAATGATTTCTGG
87089097 AAAATGATTT
1 AAAATGATTT
87089107 ACTTTTCTGG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 21 0.66
15 11 0.34
ACGTcount: A:0.42, C:0.04, G:0.15, T:0.40
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:87089279 original size:16 final size:15
Alignment explanation
Indices: 87089252--87089309 Score: 61
Period size: 14 Copynumber: 4.0 Consensus size: 15
87089242 TGAGTTAACT
87089252 TTATATA-T-ATAAA
1 TTATATATTAATAAA
87089265 TATATATATTAATAAA
1 T-TATATATTAATAAA
*
87089281 TT-TATATT-TTAAA
1 TTATATATTAATAAA
87089294 TTTATATATTAATAAA
1 -TTATATATTAATAAA
87089310 AAAATTTCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
13 5 0.14
14 14 0.38
15 8 0.22
16 10 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATATATTAATAAA
Found at i:87089295 original size:13 final size:13
Alignment explanation
Indices: 87089246--87089305 Score: 57
Period size: 13 Copynumber: 4.3 Consensus size: 13
87089236 TTTGATTGAG
*
87089246 TTAACTTTATATA
1 TTAAATTTATATA
87089259 TATAAATATATATATTA
1 T-TAAAT-T-TATA-TA
* *
87089276 ATAAATTTATATT
1 TTAAATTTATATA
87089289 TTAAATTTATATA
1 TTAAATTTATATA
87089302 TTAA
1 TTAA
87089306 TAAAAAAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 17 0.45
14 8 0.21
15 2 0.05
16 9 0.24
17 2 0.05
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAAATTTATATA
Found at i:87089299 original size:29 final size:30
Alignment explanation
Indices: 87089251--87089309 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
87089241 TTGAGTTAAC
87089251 TTTATATATATAAATATATATATTAATAAA
1 TTTATATATATAAATATATATATTAATAAA
* *
87089281 TTTATAT-TTTAAATTTATATATTAATAAA
1 TTTATATATATAAATATATATATTAATAAA
87089310 AAAATTTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (30 bp):
TTTATATATATAAATATATATATTAATAAA
Found at i:87089693 original size:22 final size:23
Alignment explanation
Indices: 87089668--87089731 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
87089658 AAATTTTTAA
*
87089668 AAAAATTATTTAAAATT-AATAT
1 AAAAATTATTAAAAATTCAATAT
87089690 AAAAGA-TA-TAAAAATTCAATAT
1 AAAA-ATTATTAAAAATTCAATAT
* *
87089712 AAAAATTATAAAAAAGTCAA
1 AAAAATTATTAAAAATTCAA
87089732 AAATTAGCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 8 0.23
22 17 0.49
23 10 0.29
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (23 bp):
AAAAATTATTAAAAATTCAATAT
Found at i:87089804 original size:38 final size:40
Alignment explanation
Indices: 87089736--87089844 Score: 177
Period size: 38 Copynumber: 2.8 Consensus size: 40
87089726 AGTCAAAAAT
87089736 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
* *
87089776 TAGCGGCGTTTAT-AT-AAAACGCCGCAAAAGGCAATCAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
*
87089814 TAGCGGCGTTTATGATAAAAATGCCGCAAAA
1 TAGCGGCGTTTATGATAAAAACGCCGCAAAA
87089845 AGTAATTTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
38 34 0.53
39 4 0.06
40 26 0.41
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.18
Consensus pattern (40 bp):
TAGCGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAA
Found at i:87092553 original size:43 final size:43
Alignment explanation
Indices: 87092359--87092542 Score: 271
Period size: 43 Copynumber: 4.3 Consensus size: 43
87092349 GTAGTAAAAG
* ** * *
87092359 CGCCGCTAAAAGCCGTGACTTTTAGCGGCGCTTTT-CCAATAAA
1 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGCTTTTACC-ACAAA
* *
87092402 CGCTGCTAAAAGTCAAGGCTTTTAGCGGCGCTTTTACCAAAAA
1 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGCTTTTACCACAAA
87092445 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGCTTTTACCACAAA
* *
87092488 CGCCGTTAAAAGTCAAGGCTTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGCTTTTACCACAAA
87092531 CGCCGCTAAAAG
1 CGCCGCTAAAAG
87092543 CCTTGACTTT
Statistics
Matches: 129, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
43 127 0.98
44 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (43 bp):
CGCCGCTAAAAGTCAAGGCTTTTAGCGGCGCTTTTACCACAAA
Found at i:87094098 original size:75 final size:76
Alignment explanation
Indices: 87093938--87094098 Score: 229
Period size: 75 Copynumber: 2.1 Consensus size: 76
87093928 CACATATTAA
*
87093938 AAAGGAAAATCAGAATTATTCCCTTATTAATAGAGAAGGCAAATGAAAGTTAGAAAAACAAATTA
1 AAAGGAATATCAGAATTATTCCCTTATTAATAGAGAAGGCAAATGAAAGTTAGAAAAACAAATTA
87094003 TATTCTTTCCCC
66 TATTCTTT-CCC
* * * **
87094015 AAA-AAATAT-AGGATTATTCCCTTATTAATAGAGAAGGCAAATGGAAAGTTAGAAAGAGGAATT
1 AAAGGAATATCAGAATTATTCCCTTATTAATAGAGAAGGCAAAT-GAAAGTTAGAAAAACAAATT
87094078 ATATTCTTT-CC
65 ATATTCTTTCCC
87094089 AAAGGAATAT
1 AAAGGAATAT
87094099 TAATTTCCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
74 5 0.07
75 37 0.49
76 30 0.40
77 3 0.04
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.28
Consensus pattern (76 bp):
AAAGGAATATCAGAATTATTCCCTTATTAATAGAGAAGGCAAATGAAAGTTAGAAAAACAAATTA
TATTCTTTCCC
Found at i:87094351 original size:138 final size:138
Alignment explanation
Indices: 87094077--87094340 Score: 359
Period size: 138 Copynumber: 1.9 Consensus size: 138
87094067 AAAGAGGAAT
*
87094077 TATATTCTTTCCAAAGGAATATTAATTTCCATGTCTCTTATATTTTGACCAAAATCAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTCTTATATTTTGACCAAAATCAATTAATAT
* * *
87094142 AACTGTTTATATTAATAATTTTAATAAAATATATAAAAATAATATTTTGTATGAATCAAATACAT
66 AACTGTTTATATTAATAAATTCAATAAAATATATAAAAATAATATTTTATATGAATCAAATACAT
87094207 AAATTAAC
131 AAATTAAC
* * * * ** *
87094215 TATATTTTTTCCAAAAGAATATTAATTTTCATGTCTTTTATTTTTTGACTGAAATTAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTCTTATATTTTGACCAAAATCAATTAATAT
* ** ** *
87094280 AA-TTTTTAATATTAATAAATTCGGTAAAATATATGCAATTAATATTTTATATGAATCAAAT
66 AACTGTTT-ATATTAATAAATTCAATAAAATATATAAAAATAATATTTTATATGAATCAAAT
87094341 TCATCTATTA
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
137 4 0.04
138 104 0.96
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (138 bp):
TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTCTTATATTTTGACCAAAATCAATTAATAT
AACTGTTTATATTAATAAATTCAATAAAATATATAAAAATAATATTTTATATGAATCAAATACAT
AAATTAAC
Found at i:87097730 original size:18 final size:18
Alignment explanation
Indices: 87097704--87097741 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
87097694 TCTTATGGGT
*
87097704 CACACGGGCGTGTGGGCC
1 CACACGGGCGTGTGAGCC
*
87097722 CACATGGGCGTGTGAGCC
1 CACACGGGCGTGTGAGCC
87097740 CA
1 CA
87097742 TTCATCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.32, G:0.39, T:0.13
Consensus pattern (18 bp):
CACACGGGCGTGTGAGCC
Found at i:87105356 original size:40 final size:40
Alignment explanation
Indices: 87105312--87105416 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
87105302 GTTCTGCATA
87105312 CTGTATCTGGTTGGGCTAAGGCCCTAGTATATGTCTGATT
1 CTGTATCTGGTTGGGCTAAGGCCCTAGTATATGTCTGATT
* *
87105352 CTGTATCTGATTGGGCTAAAGCCCTAGTATATGTCTGATT
1 CTGTATCTGGTTGGGCTAAGGCCCTAGTATATGTCTGATT
*
87105392 CTGTATCT-GATGGGCTAAGGCCCTA
1 CTGTATCTGGTTGGGCTAAGGCCCTA
87105417 ACTGATTCTA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.23
40 46 0.77
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (40 bp):
CTGTATCTGGTTGGGCTAAGGCCCTAGTATATGTCTGATT
Found at i:87111801 original size:25 final size:25
Alignment explanation
Indices: 87111768--87111829 Score: 106
Period size: 25 Copynumber: 2.4 Consensus size: 25
87111758 TGAAGAAATT
87111768 GGATAAAAATTGATTTTTGGGCATAG
1 GGAT-AAAATTGATTTTTGGGCATAG
*
87111794 GGGTAAAATTGATTTTTGGGCATAG
1 GGATAAAATTGATTTTTGGGCATAG
87111819 GGATAAAATTG
1 GGATAAAATTG
87111830 TGTTTAGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 31 0.91
26 3 0.09
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.34
Consensus pattern (25 bp):
GGATAAAATTGATTTTTGGGCATAG
Found at i:87112212 original size:47 final size:46
Alignment explanation
Indices: 87112144--87112498 Score: 170
Period size: 47 Copynumber: 7.6 Consensus size: 46
87112134 TGATTTCTGC
* *
87112144 GCCAGTGTAATACATGTCTGGGACATGCTTTAGCCACATTATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCTTTAGCCACATTATGAGA
* * * * * *
87112190 GCCAGTGTAAGACCATGTCTGGGACATGGC-ATCGGCATCCA-GACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCTTTAGCCA--CATTATGAGA
* * *
87112238 GCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCTTTAGCCACATTATGAGA
* * * * * ** *
87112284 GCCAATGTAAGACCATTTCTGGGACATGGC-ATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCTTTAGCCACA-TTATGAGA
* * * * * ** * *
87112332 GCCAGAGTAAGAAATGTTTGGGACACGCATCGGCCTCGACA-GA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCTTTAG-C-C-ACATTATGAGA
* * * * * * *
87112379 GCCAGTGTAAGACGTGTCTGGGACACGCATTAGCTA-A-GA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCTTTAGCCACATTATG-AGA
* * *
87112423 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCTTTAGCCA--CAT-TATGAGA
87112471 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
87112499 GCATCGGCAA
Statistics
Matches: 229, Mismatches: 59, Indels: 39
0.70 0.18 0.12
Matches are distributed among these distances:
43 5 0.02
44 30 0.13
45 1 0.00
46 31 0.14
47 92 0.40
48 48 0.21
49 19 0.08
50 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCTTTAGCCACATTATGAGA
Found at i:87112308 original size:94 final size:94
Alignment explanation
Indices: 87112147--87112507 Score: 375
Period size: 94 Copynumber: 3.9 Consensus size: 94
87112137 TTTCTGCGCC
* * * *
87112147 AGTGTAATACATGTCTGGGACATGCTTTAGCCA-CATTATAAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGTCTG
* *
87112211 GGACATGGCATCGGCATCCAGACGAGGGCT
66 GGACATGGCATCGGCATCAAGA-GAGTGCT
* * *
87112241 AGTGTAAGACATGTCTGGGACATGCTTCAGCCAT-ATTATGAGAGCCAATGTAAGACCATTTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGTCTG
*
87112305 GGACATGGCATCGGCA-CAGAGATGAGTGCC
66 GGACATGGCATCGGCATCA-AGA-GAGTGCT
* * * * * * *
87112335 AGAGTAAGAAATGTTTGGGACACGCATCGGCC-TCGA-CA-GAGATAGCCAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATC-ATTATGAG--AGCCAGTGTAAGACCATGT
* ** *
87112396 CTGGGACA-CGCATTAGC-T-AAGAGTTGTGCT
63 CTGGGACATGGCATCGGCATCAAGAG-AGTGCT
87112426 AGTGTAAGACATGTCTGGGACATGCATCAG-CATGCATATATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-CAT-TATGAGAGCCAGTGTAAGACCATGTC
87112490 TGGGACATGGCATCGGCA
64 TGGGACATGGCATCGGCA
87112508 ATTTATCCCA
Statistics
Matches: 217, Mismatches: 34, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
90 2 0.01
91 34 0.16
92 15 0.07
93 24 0.11
94 129 0.59
95 13 0.06
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCATCAAGAGAGTGCT
Found at i:87112503 original size:141 final size:140
Alignment explanation
Indices: 87112144--87112507 Score: 366
Period size: 141 Copynumber: 2.6 Consensus size: 140
87112134 TGATTTCTGC
* * * *
87112144 GCCAGTGTAATACATGTCTGGGACATGCTTTAGCCACAT-TATAAGAGCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG-CACATATATGAGAGCCAGTGTAAGACCATGT
* * *
87112208 CTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCTTCAGCC
65 CTGGGACATGGCATCGGCATCCAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCTTCAGCC
**
87112273 ATATTATGAGA
130 ATAAGATGAGA
* * * * * * * *
87112284 GCCAATGTAAGACCATTTCTGGGACATGGCATCGGCACAGAGATGAGTGCCAGAGTAAGA-AATG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACATATATGAGAGCCAGTGTAAGACCATG
* * * * *
87112348 TTTGGGACA-CGCATCGGCCTCGACAGA-GATAGCCAGTGTAAGACGTGTCTGGGACACGCATT-
64 TCTGGGACATGGCATCGGCATC--CAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGC-TTC
* *
87112410 AG-C-TAAGA-GTTGT
126 AGCCATAAGATG-AGA
*
87112423 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCA--CATATATGAGAGCCAGTGTAAGACCATG
87112488 TCTGGGACATGGCATCGGCA
64 TCTGGGACATGGCATCGGCA
87112508 ATTTATCCCA
Statistics
Matches: 177, Mismatches: 36, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
137 8 0.05
138 14 0.08
139 33 0.19
140 32 0.18
141 65 0.37
142 25 0.14
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (140 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCACATATATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATCCAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCTTCAGCCA
TAAGATGAGA
Found at i:87118107 original size:18 final size:19
Alignment explanation
Indices: 87118073--87118109 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
87118063 AAATCTCACC
87118073 AAATAATAATATTTTTAAT
1 AAATAATAATATTTTTAAT
*
87118092 AAATTATAAT-TTTTTAAT
1 AAATAATAATATTTTTAAT
87118110 TTATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATAATAATATTTTTAAT
Found at i:87119956 original size:43 final size:43
Alignment explanation
Indices: 87119855--87119964 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
87119845 GATCATGACT
* * *
87119855 TTTAGTGGCGCTTTTTCTAAAAACGCCGCTAATGGTCCTGGTC
1 TTTAGCGGCGCTTTTTATAAAAACGCCGCTAAAGGTCCTGGTC
* * * * *
87119898 ATTCGCTGC-ATTTTTTTAAAAAGCGCCGCTAAAGGTCCCT-GTC
1 TTTAGCGGCGCTTTTTATAAAAA-CGCCGCTAAAGGT-CCTGGTC
87119941 TTTAGCGGCGCTTTTTATAAAAAC
1 TTTAGCGGCGCTTTTTATAAAAAC
87119965 ACACTAAAGA
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
42 11 0.21
43 27 0.52
44 14 0.27
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTTATAAAAACGCCGCTAAAGGTCCTGGTC
Found at i:87125958 original size:9 final size:9
Alignment explanation
Indices: 87125944--87126059 Score: 108
Period size: 9 Copynumber: 12.3 Consensus size: 9
87125934 ATGTATTAGT
87125944 TAAGTTATG
1 TAAGTTATG
87125953 TAAGTTGTTATG
1 TAA---GTTATG
*
87125965 TACGTTATG
1 TAAGTTATG
*
87125974 TGAGTTATG
1 TAAGTTATG
*
87125983 TAAATTAT-
1 TAAGTTATG
87125991 TAAGTTATG
1 TAAGTTATG
*
87126000 TGAGTTATG
1 TAAGTTATG
87126009 TAAGTTGTTATG
1 TAA---GTTATG
*
87126021 TAAATTATG
1 TAAGTTATG
*
87126030 TAAGTTATA
1 TAAGTTATG
*
87126039 TGAGTTATG
1 TAAGTTATG
87126048 TAAGTTATG
1 TAAGTTATG
87126057 TAA
1 TAA
87126060 TTTGTTCAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
8 7 0.08
9 62 0.72
12 17 0.20
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:87126018 original size:56 final size:57
Alignment explanation
Indices: 87125946--87126057 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 57
87125936 GTATTAGTTA
** * *
87125946 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTAT-TAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTG
* *
87126002 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGT
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGT
87126058 AATTTGTTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
56 39 0.80
57 10 0.20
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.46
Consensus pattern (57 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTG
Found at i:87126044 original size:39 final size:38
Alignment explanation
Indices: 87125977--87126053 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 38
87125967 CGTTATGTGA
*
87125977 GTTATGTAAATTATTAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATTAAGTTATATGAGTTATGTAAGTT
87126015 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
1 GTTATGTAAATTAT-TAAGTTATATGAGTTATGTAAGTT
87126054 ATGTAATTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 14 0.38
39 23 0.62
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (38 bp):
GTTATGTAAATTATTAAGTTATATGAGTTATGTAAGTT
Found at i:87126911 original size:23 final size:23
Alignment explanation
Indices: 87126885--87126934 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
87126875 GTTCAAGTTT
*
87126885 ATTTAAAGGGTTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
87126908 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
87126931 ATTT
1 ATTT
87126935 GATTAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:87129435 original size:22 final size:23
Alignment explanation
Indices: 87129405--87129449 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
87129395 CAGTTAGGGA
*
87129405 AAATGAGAGAAAAGAAATTGGGT
1 AAATGAGAGAAAAGAAATCGGGT
* *
87129428 AAAT-AGAGGAATGAAATCGGGT
1 AAATGAGAGAAAAGAAATCGGGT
87129450 TTAAGTTGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.49, C:0.02, G:0.31, T:0.18
Consensus pattern (23 bp):
AAATGAGAGAAAAGAAATCGGGT
Found at i:87129872 original size:74 final size:73
Alignment explanation
Indices: 87129744--87129903 Score: 170
Period size: 75 Copynumber: 2.2 Consensus size: 73
87129734 ATTTCAAACC
*
87129744 TTTTGTGGCG--TTTATAAAGGCGCCACTAATAAAAGACTATAAAACGACCACGTTTTGAAATCT
1 TTTTGTGGCGTTTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGA-CACGTTTTGAAATCT
87129807 CTT-TAAAT
65 CTTATAAAT
* *
87129815 GTTTTGTGGCGTTTTTATAAAAAGCGCCACTAATAACAAG-GTAATAACAACG-C-CGTTTTGCA
1 -TTTTGTGGCGTTTTTAT-AAAAGCGCCACTAATAA-AAGACT-ATAA-AACGACACGTTTTGAA
* *
87129877 ATCTGTTAATAGAT
61 ATCTCTT-ATAAAT
87129891 TTTTGTGGCGTTT
1 TTTTGTGGCGTTT
87129904 GTAGAGCAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
72 10 0.13
74 19 0.25
75 31 0.41
76 11 0.15
77 4 0.05
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (73 bp):
TTTTGTGGCGTTTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACACGTTTTGAAATCTC
TTATAAAT
Found at i:87130149 original size:3 final size:3
Alignment explanation
Indices: 87130141--87130181 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
87130131 TTTCTTTCTT
*
87130141 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTC TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
87130182 ATACATGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:87130453 original size:12 final size:11
Alignment explanation
Indices: 87130431--87130472 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
87130421 TTTTACATTA
87130431 ATATC-TATAT
1 ATATCATATAT
87130441 ATA-CATATAT
1 ATATCATATAT
87130451 ATATCAATATAT
1 ATATC-ATATAT
87130463 ATATCCATAT
1 ATAT-CATAT
87130473 GAAATTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 1 0.04
10 11 0.39
11 1 0.04
12 14 0.50
13 1 0.04
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (11 bp):
ATATCATATAT
Found at i:87130726 original size:21 final size:21
Alignment explanation
Indices: 87130702--87130744 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
87130692 TTTAGAATTC
*
87130702 AAGGTTTA-ATATTTAGGGTTT
1 AAGGTTTACA-ATTTAAGGTTT
87130723 AAGGTTTACAATTTAAGGTTT
1 AAGGTTTACAATTTAAGGTTT
87130744 A
1 A
87130745 TGACTAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
AAGGTTTACAATTTAAGGTTT
Found at i:87133094 original size:27 final size:27
Alignment explanation
Indices: 87133063--87133116 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
87133053 TTCTTCAGTT
87133063 AGGTTCACGGTTTCACTTGATTTAGAC
1 AGGTTCACGGTTTCACTTGATTTAGAC
87133090 AGGTTCACGGTTTCACTTGATTTAGAC
1 AGGTTCACGGTTTCACTTGATTTAGAC
87133117 TTGTCCAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGTTCACGGTTTCACTTGATTTAGAC
Found at i:87136864 original size:20 final size:21
Alignment explanation
Indices: 87136826--87136864 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
87136816 CTAATTAAAA
**
87136826 TTTAGATAGCATGGGTTTTGG
1 TTTAGATAGCATGAATTTTGG
87136847 TTTA-ATAGCATGAATTTT
1 TTTAGATAGCATGAATTTT
87136865 TTATTTTATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.26, C:0.05, G:0.23, T:0.46
Consensus pattern (21 bp):
TTTAGATAGCATGAATTTTGG
Found at i:87137724 original size:16 final size:16
Alignment explanation
Indices: 87137703--87137737 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
87137693 TTTGATAAGT
87137703 TAAGTTTATTGCTATA
1 TAAGTTTATTGCTATA
87137719 TAAGTTTATTGCTATA
1 TAAGTTTATTGCTATA
87137735 TAA
1 TAA
87137738 ACTTACTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (16 bp):
TAAGTTTATTGCTATA
Found at i:87138661 original size:26 final size:26
Alignment explanation
Indices: 87138632--87138791 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
87138622 TGATACAAAT
87138632 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
87138658 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
87138684 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
87138710 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
87138736 TGATAATGAGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
87138762 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
87138788 TGAT
1 TGAT
87138792 GGGAATTTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 120 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:87138689 original size:52 final size:52
Alignment explanation
Indices: 87138632--87138791 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
87138622 TGATACAAAT
* *
87138632 TGATAATGGGTTAGGTAAATATTCCATGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
87138684 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
* *
87138736 TGATAATGAGTTATGTAAATGTTCCATGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
87138788 TGAT
1 TGAT
87138792 GGGAATTTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (52 bp):
TGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATATTTCA
Found at i:87140416 original size:27 final size:26
Alignment explanation
Indices: 87140376--87140516 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
87140366 AGGAAGCGTC
* *
87140376 CTGGTGGCTATGCCACAATTACCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
87140403 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
87140430 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
87140457 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
87140484 CTGGTGGCTCTGCCACAATACCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
87140511 CTGGTG
1 CTGGTG
87140517 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.09
27 89 0.89
28 2 0.02
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:87140458 original size:54 final size:53
Alignment explanation
Indices: 87140376--87140516 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
87140366 AGGAAGCGTC
87140376 CTGGTGGCTATGCCACAATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
87140430 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
87140484 CTGGTGGCTCTGCCACAATACCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTACCTG-ATCTGGTG
87140517 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:87144521 original size:26 final size:26
Alignment explanation
Indices: 87144492--87144547 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
87144482 TGATACAAAT
87144492 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87144518 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87144544 TGAT
1 TGAT
87144548 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87146172 original size:27 final size:27
Alignment explanation
Indices: 87146134--87146272 Score: 149
Period size: 27 Copynumber: 5.1 Consensus size: 27
87146124 AGGAAGCGTC
*
87146134 CTGGTGGCTCTGCCACA-ATTACCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
87146161 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
* * * *
87146188 TTGGTCGTTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
* *
87146215 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
87146242 CTGGTGGCTCTGCCATA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
87146269 CTGG
1 CTGG
87146273 CGACTTCGTT
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 9 0.10
27 81 0.87
28 3 0.03
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:87146256 original size:54 final size:54
Alignment explanation
Indices: 87146134--87146256 Score: 183
Period size: 54 Copynumber: 2.3 Consensus size: 54
87146124 AGGAAGCGTC
87146134 CTGGTGGCTCTGCCACAATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * * * * *
87146188 TTGGTCGTTATGCCACGATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
87146242 CTGGTGGCTCTGCCA
1 CTGGTGGCTCTGCCA
87146257 TAATATCTGT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.15, C:0.25, G:0.24, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACAATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:87146271 original size:54 final size:53
Alignment explanation
Indices: 87146134--87146272 Score: 179
Period size: 54 Copynumber: 2.6 Consensus size: 53
87146124 AGGAAGCGTC
*
87146134 CTGGTGGCTCTGCCACAATTACCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAA-TATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * * * *
87146188 TTGGTCGTTATGCCACGATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCAC-AATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
87146242 CTGGTGGCTCTGCCATAATATCTGTATCTGG
1 CTGGTGGCTCTGCCACAATATCTG-ATCTGG
87146273 CGACTTCGTT
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
53 7 0.10
54 62 0.89
55 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTCTGCCACAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:87146288 original size:27 final size:27
Alignment explanation
Indices: 87146258--87146313 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 27
87146248 GCTCTGCCAT
87146258 AATATCTGTATCTGGCGACTTCGTTAC
1 AATATCTGTATCTGGCGACTTCGTTAC
87146285 -A-A----TATCTGGCGACTTCGTTAC
1 AATATCTGTATCTGGCGACTTCGTTAC
87146306 AATATCTG
1 AATATCTG
87146314 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 12
0.66 0.00 0.34
Matches are distributed among these distances:
21 19 0.83
22 1 0.04
23 1 0.04
25 1 0.04
26 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
AATATCTGTATCTGGCGACTTCGTTAC
Found at i:87146290 original size:21 final size:21
Alignment explanation
Indices: 87146266--87146315 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
87146256 ATAATATCTG
87146266 TATCTGGCGACTTCGTTACAA
1 TATCTGGCGACTTCGTTACAA
87146287 TATCTGGCGACTTCGTTACAA
1 TATCTGGCGACTTCGTTACAA
87146308 TATCTGGC
1 TATCTGGC
87146316 AGCCTCGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (21 bp):
TATCTGGCGACTTCGTTACAA
Found at i:87156456 original size:133 final size:133
Alignment explanation
Indices: 87156218--87156484 Score: 507
Period size: 133 Copynumber: 2.0 Consensus size: 133
87156208 AACGAATTTA
87156218 ACTCAAAGGAATCAAGGATATCATATGAGGGTAACACGTACATGACGATGTTATTGAACAAAGAA
1 ACTCAAAGGAATCAAGGATATCATATGAGGGTAACACGTACATGACGATGTTATTGAACAAAGAA
87156283 GTTGGATGAATTACTTTCATAAATAGTATACAATAAGGAGTTTTCAATCATGGTACTTCTTATGG
66 GTTGGATGAATTACTTTCATAAATAGTATACAATAAGGAGTTTTCAATCATGGTACTTCTTATGG
87156348 ACT
131 ACT
* * *
87156351 ACTCAAAGGAATCAAGGATATCATATGAGGGTAACATGTACATGACGATGTTATTGAACGAAGCA
1 ACTCAAAGGAATCAAGGATATCATATGAGGGTAACACGTACATGACGATGTTATTGAACAAAGAA
87156416 GTTGGATGAATTACTTTCATAAATAGTATACAATAAGGAGTTTTCAATCATGGTACTTCTTATGG
66 GTTGGATGAATTACTTTCATAAATAGTATACAATAAGGAGTTTTCAATCATGGTACTTCTTATGG
87156481 ACT
131 ACT
87156484 A
1 A
87156485 ACTACATGAT
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (133 bp):
ACTCAAAGGAATCAAGGATATCATATGAGGGTAACACGTACATGACGATGTTATTGAACAAAGAA
GTTGGATGAATTACTTTCATAAATAGTATACAATAAGGAGTTTTCAATCATGGTACTTCTTATGG
ACT
Found at i:87158563 original size:25 final size:25
Alignment explanation
Indices: 87158529--87158579 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
87158519 TACTTACCCT
*
87158529 TAAAAAATTATATATCCCTCAACAA
1 TAAAAAATTATATATCCCTAAACAA
*
87158554 TAAAAAATTATATGTCCCTAAACAA
1 TAAAAAATTATATATCCCTAAACAA
87158579 T
1 T
87158580 CAAGGGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (25 bp):
TAAAAAATTATATATCCCTAAACAA
Found at i:87160853 original size:16 final size:15
Alignment explanation
Indices: 87160805--87160857 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 15
87160795 AACTGTTTTA
87160805 AATTTATTTTT--TT
1 AATTTATTTTTAATT
*
87160818 AATTTTTTTTTGAATT
1 AATTTATTTTT-AATT
87160834 -ATTTATTTTTAATAT
1 AATTTATTTTTAAT-T
87160849 AATTTATTT
1 AATTTATTT
87160858 CTTTTTGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
13 10 0.30
14 3 0.09
15 10 0.30
16 10 0.30
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (15 bp):
AATTTATTTTTAATT
Found at i:87161073 original size:23 final size:22
Alignment explanation
Indices: 87161045--87161124 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 22
87161035 AATTTATTAT
87161045 ATATTTATATTATTTCTAAACAC
1 ATATTTATATTATTT-TAAACAC
* * *
87161068 ATATTTATATTTAAATTT-ATCAT
1 ATATTTATA-TT-ATTTTAAACAC
87161091 ATATTTATATTATTTTAAA-AC
1 ATATTTATATTATTTTAAACAC
87161112 ATGCATTTATATT
1 AT--ATTTATATT
87161125 TTAATTTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
21 7 0.15
22 3 0.07
23 30 0.65
24 3 0.07
25 3 0.07
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (22 bp):
ATATTTATATTATTTTAAACAC
Found at i:87161087 original size:46 final size:45
Alignment explanation
Indices: 87161035--87161131 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 45
87161025 ACCGAATATT
*
87161035 AATTTATTATATATTTATATTATTTCTAAACACAT-ATTTATATTTA
1 AATTTATCATATATTTATATTATTT-TAAA-ACATCATTTATATTTA
*
87161081 AATTTATCATATATTTATATTATTTTAAAACATGCATTTATATTTT
1 AATTTATCATATATTTATATTATTTTAAAACAT-CATTTATATTTA
87161127 AATTT
1 AATTT
87161132 TTTAATTCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
44 4 0.09
45 4 0.09
46 39 0.83
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (45 bp):
AATTTATCATATATTTATATTATTTTAAAACATCATTTATATTTA
Found at i:87161538 original size:28 final size:28
Alignment explanation
Indices: 87161486--87161539 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
87161476 ATTAATATAA
*
87161486 TATAAAAATTAATTAATTATGAAAATTG
1 TATAAAAATTAATTAATTATCAAAATTG
*
87161514 TATAAAATTTAGATTAATTA-CAAAAT
1 TATAAAAATTA-ATTAATTATCAAAAT
87161540 GAGTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.39
Consensus pattern (28 bp):
TATAAAAATTAATTAATTATCAAAATTG
Found at i:87163355 original size:18 final size:18
Alignment explanation
Indices: 87163328--87163372 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
87163318 TATTTTCAAG
* * *
87163328 AAGTACTTTTAAGATAAA
1 AAGTATTTTTAACACAAA
*
87163346 AAGTATTTTTGACACAAA
1 AAGTATTTTTAACACAAA
87163364 AAGTATTTT
1 AAGTATTTT
87163373 AAAAAAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (18 bp):
AAGTATTTTTAACACAAA
Found at i:87179512 original size:81 final size:83
Alignment explanation
Indices: 87179367--87179530 Score: 242
Period size: 81 Copynumber: 2.0 Consensus size: 83
87179357 GTTATGGAGG
* * * *
87179367 TGAAGGAAAAATCCAAAGAACGAAAGAATCTAAGAATAATTATTTGCATGGTATGATTATGAATG
1 TGAAGGAAAAATCCAAAGAACAAAAGAATCTAAGAATAATTATTTGCATAGTATAATTACGAATG
*
87179432 -AAGAATTAAAGAATATT
66 AAAGAATGAAAGAATATT
* *
87179449 TGAAGG-AAAATCCAAAGAACAAAAGAATCTAAGAATAATTATTTGCGTAGTGTAATTACGAATG
1 TGAAGGAAAAATCCAAAGAACAAAAGAATCTAAGAATAATTATTTGCATAGTATAATTACGAATG
87179513 AAAAGAATGAAAGAATAT
66 -AAAGAATGAAAGAATAT
87179531 CTGCTAAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 52 0.71
82 6 0.08
83 15 0.21
ACGTcount: A:0.50, C:0.07, G:0.18, T:0.25
Consensus pattern (83 bp):
TGAAGGAAAAATCCAAAGAACAAAAGAATCTAAGAATAATTATTTGCATAGTATAATTACGAATG
AAAGAATGAAAGAATATT
Found at i:87184227 original size:46 final size:47
Alignment explanation
Indices: 87184128--87184289 Score: 167
Period size: 46 Copynumber: 3.5 Consensus size: 47
87184118 TTATGAGAGC
* * *
87184128 CAGTGTAAGACCATGTCTGGAACATGGCATC-AGCATTGAGACG-AGTGT
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGA-CCTCGAGACGTA-TGT
* *
87184176 TAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGAGACGTAAGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGACCTCGAGACGTATGT
* *
87184222 CAGTGTAAGA-CATGTCTGGGACATGCATCG-GCTACAAGA--TATGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGACCT-CGAGACGTATGT
*
87184266 CAATGTAAGACCATGTCTGGGACA
1 CAGTGTAAGACCATGTCTGGGACA
87184290 CAGCATCGGC
Statistics
Matches: 100, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
44 13 0.13
45 15 0.15
46 48 0.48
47 15 0.15
48 9 0.09
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGACCTCGAGACGTATGT
Found at i:87184306 original size:44 final size:44
Alignment explanation
Indices: 87184179--87184308 Score: 140
Period size: 46 Copynumber: 2.9 Consensus size: 44
87184169 CGAGTGTTAG
* * * * *
87184179 TGTAAGACATGTCTGGGACATGCATCGACCT-CGAGACGTAAGTCAG
1 TGTAAGACATGTCTGGGACAAGCATCG-GCTACAAGA--TATGTCAA
*
87184225 TGTAAGACATGTCTGGGACATGCATCGGCTACAAGATATGTCAA
1 TGTAAGACATGTCTGGGACAAGCATCGGCTACAAGATATGTCAA
87184269 TGTAAGACCATGTCTGGGACACAGCATCGGC-AC-AGATATG
1 TGTAAGA-CATGTCTGGGACA-AGCATCGGCTACAAGATATG
87184309 CTAGAGCTTG
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
44 20 0.26
45 17 0.22
46 39 0.51
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACAAGCATCGGCTACAAGATATGTCAA
Found at i:87186688 original size:40 final size:40
Alignment explanation
Indices: 87186644--87186725 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
87186634 TGATACAAAC
*
87186644 TCAGAAATGTCTCGTTTTATACCCAACCACCAATACGACT
1 TCAGAAATGTCTCGTTTCATACCCAACCACCAATACGACT
* *
87186684 TCAGAAATGTCTCGTTTCATACCTAACCACTAATACGACT
1 TCAGAAATGTCTCGTTTCATACCCAACCACCAATACGACT
87186724 TC
1 TC
87186726 TTCAAATCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.29
Consensus pattern (40 bp):
TCAGAAATGTCTCGTTTCATACCCAACCACCAATACGACT
Found at i:87198188 original size:48 final size:48
Alignment explanation
Indices: 87198117--87198346 Score: 211
Period size: 48 Copynumber: 4.9 Consensus size: 48
87198107 TTGTAGGATT
* * * *
87198117 CCAATGCCGTATCCCGGATATGGTCTTACATGGGATCACATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* * ** **
87198165 CCAATGCCATGTCCTAGACATGGTCTTACATAGGATCGTAGGTCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* *
87198213 CCAATTCCATGTCCCAGAAATGGTCTTACATGGGATCACATATCGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
* **** * * *
87198261 TCAAT---A-G-CCCAG-CTATGGTCTTACACAAAATTACGTATCGACG
1 CCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCGATG
* *
87198304 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCATATAT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAT
87198347 AACCCTAATG
Statistics
Matches: 139, Mismatches: 36, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
43 30 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 104 0.75
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATG
Found at i:87198327 original size:91 final size:93
Alignment explanation
Indices: 87198136--87198346 Score: 243
Period size: 91 Copynumber: 2.3 Consensus size: 93
87198126 TATCCCGGAT
* * **
87198136 ATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATAGGAT
1 ATGGTCTTACATGGGATCACATATCGATGCCAAT--CATGTCCCAGACATGGTCTTACACAAAAT
* **
87198201 CGTAGGTCGATGCCAATTCCATGTCCCAGAA
64 CGTA-GTCGACGCCAAAGCCATGTCCCAGAA
*
87198232 ATGGTCTTACATGGGATCACATATCGATGTCAAT-A-G-CCCAG-CTATGGTCTTACACAAAATT
1 ATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCCAGAC-ATGGTCTTACACAAAA-T
*
87198293 ACGTA-TCGACGCCAAAGCCATGTCCCAGAC
64 -CGTAGTCGACGCCAAAGCCATGTCCCAGAA
*
87198323 ATGGTCTTACATGGGATCATATAT
1 ATGGTCTTACATGGGATCACATAT
87198347 AACCCTAATG
Statistics
Matches: 102, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
90 1 0.01
91 61 0.60
92 2 0.02
93 5 0.05
96 33 0.32
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (93 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCCAGACATGGTCTTACACAAAATCG
TAGTCGACGCCAAAGCCATGTCCCAGAA
Found at i:87217672 original size:42 final size:42
Alignment explanation
Indices: 87217625--87217713 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
87217615 TGGGGCAAGC
* *
87217625 CGTGTGTCATACATGATCTAGACACACGCCTGTGTGCCTACT
1 CGTGTGTCACACATGATCTAGACACACACCTGTGTGCCTACT
* *
87217667 CGTGTGTCACACATGATTTAGACAGACACCTGTGTGCCTACT
1 CGTGTGTCACACATGATCTAGACACACACCTGTGTGCCTACT
87217709 CGTGT
1 CGTGT
87217714 AGACAAAACT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.29
Consensus pattern (42 bp):
CGTGTGTCACACATGATCTAGACACACACCTGTGTGCCTACT
Found at i:87225978 original size:71 final size:71
Alignment explanation
Indices: 87225890--87226031 Score: 248
Period size: 71 Copynumber: 2.0 Consensus size: 71
87225880 ACTTAAAGTA
*
87225890 TAATGGTCTAATTACCATTTAAGGACCTCCAATTTAAAATTTCATAGCAATTAGAAACCTCTAGC
1 TAATGGTCTAATTACCATTTAAAGACCTCCAATTTAAAATTTCATAGCAATTAGAAACCTCTAGC
87225955 TTCTAG
66 TTCTAG
* * *
87225961 TAATGGTCTAATTACCATTTAAAGACCTCTAATTTAAAATTTCATAGTAATTAGACACCTCTAGC
1 TAATGGTCTAATTACCATTTAAAGACCTCCAATTTAAAATTTCATAGCAATTAGAAACCTCTAGC
87226026 TTCTAG
66 TTCTAG
87226032 AACACACATT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (71 bp):
TAATGGTCTAATTACCATTTAAAGACCTCCAATTTAAAATTTCATAGCAATTAGAAACCTCTAGC
TTCTAG
Found at i:87231942 original size:28 final size:28
Alignment explanation
Indices: 87231896--87231951 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
87231886 ATGTCATTGA
* **
87231896 ATACTCAATGTCTTTCACACTAAGTGTC
1 ATACTCAATATCTCACACACTAAGTGTC
87231924 ATACTCAATATCTCACACACTAAGTGTC
1 ATACTCAATATCTCACACACTAAGTGTC
87231952 GTACATAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGTC
Found at i:87232062 original size:40 final size:40
Alignment explanation
Indices: 87231939--87232052 Score: 147
Period size: 40 Copynumber: 2.9 Consensus size: 40
87231929 CAATATCTCA
* * * * *
87231939 CACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAGTCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCG
* *
87231979 CACACTAAGTGCCATATATAGCTGAAGCTATGTCAAATTG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCG
* *
87232019 CACAGTAAGTGCCATCTATAGCCGAAGCTATGTC
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTC
87232053 GTCTCGCACA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATGTCAAATCG
Found at i:87248501 original size:25 final size:25
Alignment explanation
Indices: 87248463--87248513 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
87248453 ACTAATTATT
87248463 TAAAGAATGAAATTGTGTAAAAGGAA
1 TAAAGAATGAAATT-TGTAAAAGGAA
* *
87248489 TAAAGTAT-AAATTTGTGAAAGGAA
1 TAAAGAATGAAATTTGTAAAAGGAA
87248513 T
1 T
87248514 TAATGAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 11 0.48
25 5 0.22
26 7 0.30
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (25 bp):
TAAAGAATGAAATTTGTAAAAGGAA
Done.