Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 264 of 332
Found at i:88297513 original size:5 final size:5
Alignment explanation
Indices: 88297503--88297563 Score: 52
Period size: 5 Copynumber: 11.6 Consensus size: 5
88297493 TTATTATTTA
* * *
88297503 TTATT TTATT TCATT TTATT AGTATTT ATTATT TTATT TTATT ATT-TA
1 TTATT TTATT TTATT TTATT -TTA-TT -TTATT TTATT TTATT -TTATT
88297551 TTATT TTATT TTA
1 TTATT TTATT TTA
88297564 GTTATTAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
4 2 0.04
5 33 0.72
6 6 0.13
7 5 0.11
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (5 bp):
TTATT
Found at i:88297548 original size:20 final size:20
Alignment explanation
Indices: 88297499--88297569 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
88297489 ATTTTTATTA
88297499 TTTATTATTTTATTTCATTTTA-
1 TTTATTA-TTTA-TT-ATTTTAT
*
88297521 -TTAGTATTTATTATTTTAT
1 TTTATTATTTATTATTTTAT
88297540 TTTATTATTTATTATTTTAT
1 TTTATTATTTATTATTTTAT
88297560 TTTAGTTATT
1 TTTA-TTATT
88297570 AATAAAAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
18 6 0.14
19 2 0.05
20 26 0.59
21 10 0.23
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (20 bp):
TTTATTATTTATTATTTTAT
Found at i:88298754 original size:16 final size:16
Alignment explanation
Indices: 88298712--88298746 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
88298702 AAATTAAATT
*
88298712 AAATTAAAAAACAAAA
1 AAATAAAAAAACAAAA
*
88298728 AAATACAAAAACAAAA
1 AAATAAAAAAACAAAA
88298744 AAA
1 AAA
88298747 AGAAAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.83, C:0.09, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAAAACAAAA
Found at i:88299365 original size:23 final size:24
Alignment explanation
Indices: 88299321--88299366 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
88299311 ATTTTAATTA
*
88299321 TTTAGGATTTTTATTTAGATTTAAT
1 TTTAGGA-TTTTATTTACATTTAAT
*
88299346 TTTAGGA-TTTATTTTCATTTA
1 TTTAGGATTTTATTTACATTTA
88299367 TCCTTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
25 7 0.37
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (24 bp):
TTTAGGATTTTATTTACATTTAAT
Found at i:88299387 original size:10 final size:10
Alignment explanation
Indices: 88299352--88299411 Score: 63
Period size: 10 Copynumber: 6.0 Consensus size: 10
88299342 TAATTTTAGG
88299352 ATTTAT-TTT
1 ATTTATCTTT
88299361 CATTTATCCTTT
1 -ATTTAT-CTTT
88299373 -TTTATCTTT
1 ATTTATCTTT
*
88299382 AATTATCTTT
1 ATTTATCTTT
88299392 ATTTAT-TTGT
1 ATTTATCTT-T
88299402 ATTTATCTTT
1 ATTTATCTTT
88299412 TAGAATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
9 6 0.14
10 32 0.74
11 2 0.05
12 3 0.07
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:88305422 original size:20 final size:23
Alignment explanation
Indices: 88305380--88305422 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
88305370 ATACTCTTAC
*
88305380 ATTATATTATATTGTATATAAAA
1 ATTATATTATATTGTATAGAAAA
88305403 ATTATA-TAT-TTGTAT-GAAAA
1 ATTATATTATATTGTATAGAAAA
88305423 TATAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 6 0.32
22 3 0.16
23 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (23 bp):
ATTATATTATATTGTATAGAAAA
Found at i:88310221 original size:59 final size:56
Alignment explanation
Indices: 88310129--88310237 Score: 155
Period size: 59 Copynumber: 1.9 Consensus size: 56
88310119 AGAAAAGTCA
* ** *
88310129 TAACCTTTTGGTGGCTAAGTGTATTGTATTGGAATCATCACCATTCATTTGCAAAATCT
1 TAACCTTTTGGTGGCTAAATACACTGTATTGGAA-C--CACCATTCATTTGCAAAATCT
88310188 TAACCTTTTGGTGGCTAAATACACTGTATTGGAACCACCATTCATTTGCA
1 TAACCTTTTGGTGGCTAAATACACTGTATTGGAACCACCATTCATTTGCA
88310238 GACTTTTCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
56 15 0.33
58 1 0.02
59 30 0.65
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (56 bp):
TAACCTTTTGGTGGCTAAATACACTGTATTGGAACCACCATTCATTTGCAAAATCT
Found at i:88310477 original size:66 final size:67
Alignment explanation
Indices: 88310402--88310544 Score: 198
Period size: 66 Copynumber: 2.1 Consensus size: 67
88310392 CATTTCTTTG
* * **
88310402 CAAATTTTTAGTATTGTATTGAAATCATCATGGTAACTATATT-GAATCACCATCCATTTGCATT
1 CAAAATTTTAGTATTGTATTGAAATCACCATGAAAACTATATTAGAATCACCATCCATTTGCATT
88310466 TA
66 TA
* * * * *
88310468 TAAAATTTTAGTATTGTATTGGAATCACCCTGAAAACTATATTAGAATCACTATTCATTTGCATT
1 CAAAATTTTAGTATTGTATTGAAATCACCATGAAAACTATATTAGAATCACCATCCATTTGCATT
88310533 TA
66 TA
88310535 CAAAATTTTA
1 CAAAATTTTA
88310545 ATACTGTAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
66 36 0.55
67 30 0.45
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.41
Consensus pattern (67 bp):
CAAAATTTTAGTATTGTATTGAAATCACCATGAAAACTATATTAGAATCACCATCCATTTGCATT
TA
Found at i:88310479 original size:104 final size:105
Alignment explanation
Indices: 88310297--88310491 Score: 284
Period size: 104 Copynumber: 1.9 Consensus size: 105
88310287 ATATTGGTTA
* * * * ** *
88310297 CAAAATTTTAGTATTGTATTGGAATCATCATGGTAATTGTTTTAGAATCATTATTCATTTGCATT
1 CAAAATTTTAGTATTGTATTGAAATCATCATGGTAACTATATTAGAATCACCATCCATTTGCATT
*
88310362 TGCAAAATCTTAGTATTGTATTGGAAATACCATTTCTTTG
66 TACAAAATCTTAGTATTGTATTGGAAATACCATTTCTTTG
*
88310402 CAAATTTTTAGTATTGTATTGAAATCATCATGGTAACTATATT-GAATCACCATCCATTTGCATT
1 CAAAATTTTAGTATTGTATTGAAATCATCATGGTAACTATATTAGAATCACCATCCATTTGCATT
* *
88310466 TATAAAATTTTAGTATTGTATTGGAA
66 TACAAAATCTTAGTATTGTATTGGAA
88310492 TCACCCTGAA
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
104 41 0.52
105 38 0.48
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44
Consensus pattern (105 bp):
CAAAATTTTAGTATTGTATTGAAATCATCATGGTAACTATATTAGAATCACCATCCATTTGCATT
TACAAAATCTTAGTATTGTATTGGAAATACCATTTCTTTG
Found at i:88312789 original size:27 final size:27
Alignment explanation
Indices: 88312725--88312790 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
88312715 ATAGCCCTTG
* *
88312725 TGGCAAACTCCGAAAGAATGGCCTTTA
1 TGGCGAACTCTGAAAGAATGGCCTTTA
* *
88312752 TGGCGAACTCTGAAAGGATGGTCTTTA
1 TGGCGAACTCTGAAAGAATGGCCTTTA
*
88312779 TGGTGAACTCTG
1 TGGCGAACTCTG
88312791 TGTTAACTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (27 bp):
TGGCGAACTCTGAAAGAATGGCCTTTA
Found at i:88314413 original size:42 final size:42
Alignment explanation
Indices: 88314350--88314464 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 42
88314340 CTTCGTTTTC
** * *
88314350 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCA-CATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATC-T-A
88314393 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATCTA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATCTA
*
88314434 TCGATGCCATAGCCCAGTTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
88314465 GAATCACATA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
41 2 0.03
42 61 0.94
43 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCATCTA
Found at i:88314538 original size:47 final size:46
Alignment explanation
Indices: 88314435--88314558 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
88314425 ATTCATCTAT
* * * * *
88314435 CGATGCCATAGCCCAGTTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
88314481 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
88314528 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
88314559 GAAATCACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:88314575 original size:7 final size:7
Alignment explanation
Indices: 88314563--88314591 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
88314553 TATACGGAAA
88314563 TCACTTG
1 TCACTTG
88314570 TCACTTG
1 TCACTTG
88314577 TCACTTG
1 TCACTTG
88314584 TCACTTG
1 TCACTTG
88314591 T
1 T
88314592 AGCCGAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:88314625 original size:31 final size:31
Alignment explanation
Indices: 88314590--88314774 Score: 273
Period size: 31 Copynumber: 6.0 Consensus size: 31
88314580 CTTGTCACTT
*
88314590 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
88314621 GTAGCCGGAGCTACCATTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
88314652 GTAGTCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
88314683 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
88314714 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
88314745 GTAGCTGAAGCTACCACTTTTCACTTATCA
1 GTAGCCGAAGCTACCACTTTTCACTGATCA
88314775 TTTGTCATTG
Statistics
Matches: 140, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
30 3 0.02
31 135 0.96
32 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:88314851 original size:50 final size:51
Alignment explanation
Indices: 88314745--88314871 Score: 186
Period size: 50 Copynumber: 2.5 Consensus size: 51
88314735 CACTGATCAG
* * * *
88314745 GTAGCTGAAGCTACCACTTTTCACTTATCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTATCATTTGTCATTGATCAGATAAGA
*
88314796 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGA
1 GTAGCCGAAGCTATCACTTATCACTTATCA-TTTGTCATTGATCAGATAAGA
88314846 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
88314872 GTTTCCATGG
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTATCATTTGTCATTGATCAGATAAGA
Found at i:88320517 original size:14 final size:14
Alignment explanation
Indices: 88320498--88320527 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
88320488 TATCTTATAA
88320498 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
88320512 ATATGCGTTAATCT
1 ATATGCGTGAATCT
88320526 AT
1 AT
88320528 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:88328342 original size:14 final size:14
Alignment explanation
Indices: 88328323--88328352 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
88328313 TATCTTATAA
88328323 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
88328337 ATATGCGTTAATCT
1 ATATGCGTGAATCT
88328351 AT
1 AT
88328353 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:88337879 original size:132 final size:132
Alignment explanation
Indices: 88337642--88338158 Score: 876
Period size: 132 Copynumber: 3.9 Consensus size: 132
88337632 GAATCCTACC
*
88337642 GATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTGAGATT
1 GATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTAAGATT
* * *
88337707 GCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTTTAGTAGAGTAGGTTCAAATTT
66 GCAGTGAAGCAGATTTAAGCCATCACCCTAGCTCCCTAAAGTTGTAGTAGAGTAGGTTGAAATTT
88337772 TA
131 TA
88337774 GATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTAAGATT
1 GATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTAAGATT
*
88337839 GCAGTGAAGCAGATTTAAGCCATCACCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATTT
66 GCAGTGAAGCAGATTTAAGCCATCACCCTAGCTCCCTAAAGTTGTAGTAGAGTAGGTTGAAATTT
88337904 TA
131 TA
* * *
88337906 GATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCTTGAGATT
1 GATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTAAGATT
*
88337971 GCAGTGAAGCAGATTTGAGCCATCACCCTAGCTCCCTAAAGTTGTAGTAGAGTAGGTTGAAATTT
66 GCAGTGAAGCAGATTTAAGCCATCACCCTAGCTCCCTAAAGTTGTAGTAGAGTAGGTTGAAATTT
88338036 TA
131 TA
* *
88338038 GATCTCGTTTCCCTGAAGTTACAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTGATG-T
1 GATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCT-AAGAT
* * *
88338102 TGCAGTGAAGCAGATTTAAGCCATCACACTAGCTCCCTAATA-TTGTAATGGAGTAGG
65 TGCAGTGAAGCAGATTTAAGCCATCACCCTAGCTCCCTAA-AGTTGTAGTAGAGTAGG
88338159 CCGAAGATTG
Statistics
Matches: 364, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
132 362 0.99
133 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (132 bp):
GATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGGCTTCCTAAGATT
GCAGTGAAGCAGATTTAAGCCATCACCCTAGCTCCCTAAAGTTGTAGTAGAGTAGGTTGAAATTT
TA
Found at i:88338611 original size:20 final size:20
Alignment explanation
Indices: 88338583--88338632 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
88338573 GCGCGCACCT
* *
88338583 GTACACCAGCTCTCGTACCC
1 GTACGCCAGCTCTCATACCC
88338603 GTACGCCAGCTCTCATACCC
1 GTACGCCAGCTCTCATACCC
*
88338623 GAACGCCAGC
1 GTACGCCAGC
88338633 ACGTCTCGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.22, C:0.44, G:0.18, T:0.16
Consensus pattern (20 bp):
GTACGCCAGCTCTCATACCC
Found at i:88339832 original size:17 final size:18
Alignment explanation
Indices: 88339792--88339837 Score: 69
Period size: 17 Copynumber: 2.6 Consensus size: 18
88339782 GTATTTTGGC
88339792 ATATATTTTGCTATGATA
1 ATATATTTTGCTATGATA
88339810 ATATATTTTG-TAT-ATA
1 ATATATTTTGCTATGATA
88339826 TATATATTTTGC
1 -ATATATTTTGC
88339838 ATAAAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.12
17 13 0.50
18 10 0.38
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (18 bp):
ATATATTTTGCTATGATA
Found at i:88340121 original size:17 final size:17
Alignment explanation
Indices: 88340082--88340130 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
88340072 ACATATCAAT
* *
88340082 ATACTTATTACTTTAAT
1 ATACTTTTTACTTTAAA
* *
88340099 AGACTTTTTATTTTAAA
1 ATACTTTTTACTTTAAA
*
88340116 ATACTTTTTGCTTTA
1 ATACTTTTTACTTTA
88340131 TGATTTTTTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.55
Consensus pattern (17 bp):
ATACTTTTTACTTTAAA
Found at i:88340367 original size:15 final size:15
Alignment explanation
Indices: 88340355--88340386 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
88340345 GTTTTTTTTA
88340355 TATCATATTTTTTGT
1 TATCATATTTTTTGT
*
88340370 TATCATATGTTTTGT
1 TATCATATTTTTTGT
88340385 TA
1 TA
88340387 ACTTCTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.06, G:0.09, T:0.62
Consensus pattern (15 bp):
TATCATATTTTTTGT
Found at i:88340372 original size:17 final size:17
Alignment explanation
Indices: 88340346--88340386 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
88340336 GGTCATGTAG
88340346 TTTTTT-TTATATCATA
1 TTTTTTGTTATATCATA
88340362 TTTTTTG-T-TATCATA
1 TTTTTTGTTATATCATA
*
88340377 TGTTTTGTTA
1 TTTTTTGTTA
88340387 ACTTCTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.20, C:0.05, G:0.07, T:0.68
Consensus pattern (17 bp):
TTTTTTGTTATATCATA
Found at i:88341255 original size:21 final size:19
Alignment explanation
Indices: 88341215--88341261 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
88341205 ATAGAGCACG
88341215 CGCCCGTGTGCTAGGGACA
1 CGCCCGTGTGCTAGGGACA
88341234 CGCCCGTGTGCTAGGGACA
1 CGCCCGTGTGCTAGGGACA
*
88341253 CACCCGTGT
1 CGCCCGTGT
88341262 CCCGAACCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (19 bp):
CGCCCGTGTGCTAGGGACA
Found at i:88343147 original size:46 final size:46
Alignment explanation
Indices: 88343095--88343265 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
88343085 TAACCCGCCT
*
88343095 ATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
* *
88343141 ATAAGTGAACTCGGACTCAAGTCAACGAGCTCGGATGCCTAGTT-ACAT-C
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCC
* * * ** *
88343190 -TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
88343234 ATAAGTGAACTCGGACTCAACTCAACGAGCTC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTC
88343266 AGATGCCCAA
Statistics
Matches: 102, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.56
47 25 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
Found at i:88343208 original size:93 final size:93
Alignment explanation
Indices: 88343101--88343272 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
88343091 GCCTATAAGT
** * *
88343101 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAGTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
88343166 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCAGATGCCTAGTTACATCTCAC
* *
88343194 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
88343259 CGAGCTCAGATGCC
66 CGAGCTCAGATGCC
88343273 CAAATATTCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCAC
Found at i:88343507 original size:20 final size:20
Alignment explanation
Indices: 88343479--88343547 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
88343469 ATTATCATAT
88343479 CATTT-AAATAACATCAAAA
1 CATTTAAAATAACATCAAAA
88343498 CATTTAAAAT-A-AT---AA
1 CATTTAAAATAACATCAAAA
88343513 CTATGTTATAAATAACATCAAAA
1 C-AT-TTA-AAATAACATCAAAA
88343536 CATTTAAAATAA
1 CATTTAAAATAA
88343548 TAACTATGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 17
0.71 0.00 0.29
Matches are distributed among these distances:
15 3 0.07
16 2 0.05
17 3 0.07
18 6 0.15
19 7 0.17
20 12 0.29
21 3 0.07
22 2 0.05
23 3 0.07
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.30
Consensus pattern (20 bp):
CATTTAAAATAACATCAAAA
Found at i:88343526 original size:38 final size:38
Alignment explanation
Indices: 88343483--88343558 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
88343473 TCATATCATT
88343483 TAAATAACATCAAAACATTTAAAATAATAACTATGTTA
1 TAAATAACATCAAAACATTTAAAATAATAACTATGTTA
88343521 TAAATAACATCAAAACATTTAAAATAATAACTATGTTA
1 TAAATAACATCAAAACATTTAAAATAATAACTATGTTA
88343559 CCAACATTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.32
Consensus pattern (38 bp):
TAAATAACATCAAAACATTTAAAATAATAACTATGTTA
Found at i:88343543 original size:19 final size:19
Alignment explanation
Indices: 88343479--88343543 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
88343469 ATTATCATAT
88343479 CATTTAAATAACATCAAAA
1 CATTTAAATAACATCAAAA
*
88343498 CATTTAAA-ATA-AT-AACTA
1 CATTTAAATA-ACATCAA-AA
**
88343516 TGTTATAAATAACATCAAAA
1 CATT-TAAATAACATCAAAA
88343536 CATTTAAA
1 CATTTAAA
88343544 ATAATAACTA
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
17 2 0.06
18 6 0.18
19 18 0.53
20 6 0.18
21 2 0.06
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (19 bp):
CATTTAAATAACATCAAAA
Found at i:88344896 original size:131 final size:132
Alignment explanation
Indices: 88344599--88345030 Score: 362
Period size: 131 Copynumber: 3.3 Consensus size: 132
88344589 CAATTTTGTA
* * * * * * *
88344599 TTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATATCTTTT-AAAATCCCTT-AAAC
1 TTTGTTCAAAACAATCAAATATCCCTCCAAAATTTCACTCATGTCTTTTAAAAATCCTTTAAAAC
* * * * * *
88344662 GAAGGCGATATGCGATTTTTGGCAATTCGTGGAATCGTGCCCTATCGTGTTGGGTTGCAATTTCT
66 GAAGGCAATATGCGATGTTTGACAATTCGTGGAATCATGCCCTATCGTGCTGGATTGCAATTTCT
88344727 CG
131 CG
* * *
88344729 TTTGTTTAAAATAATCAAATATCCCTCCAAAATTTCACTCAGGTCTTTTAAAAATCCTTTAAAAC
1 TTTGTTCAAAACAATCAAATATCCCTCCAAAATTTCACTCATGTCTTTTAAAAATCCTTTAAAAC
* * **
88344794 GAAGGTAATACT-CGGTGTTTGACAATTCG-GGAATCATGCCCTATCGTGCTGGATTGTGATTTC
66 GAAGGCAATA-TGCGATGTTTGACAATTCGTGGAATCATGCCCTATCGTGCTGGATTGCAATTTC
88344857 TCG
130 TCG
* * *** *
88344860 TTTGTTCAAAACAATCGAATATTCCCT-TAGGTTTTCATTCATGT-TTATTAAAAA-CCTTTTAA
1 TTTGTTCAAAACAATCAAATA-TCCCTCCAAAATTTCACTCATGTCTT-TTAAAAATCC-TTTAA
* * * * * * *
88344922 AACGAAGGCGATGTTCGATGTTTGGCGATT--TGAGAATCGA-GCCCTATCGTGCTGGGTTGCAC
63 AACGAAGGCAATATGCGATGTTTGACAATTCGTG-GAATC-ATGCCCTATCGTGCTGGATTGCAA
* *
88344984 TTTTTCA
126 TTTCTCG
* * * * * * *
88344991 TTCGCTCAAAACAATCGAAGATTCCTTCAGAATTTCACTC
1 TTTGTTCAAAACAATCAAATATCCCTCCAAAATTTCACTC
88345031 GTATTTTCTA
Statistics
Matches: 244, Mismatches: 47, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
130 52 0.21
131 159 0.65
132 32 0.13
133 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (132 bp):
TTTGTTCAAAACAATCAAATATCCCTCCAAAATTTCACTCATGTCTTTTAAAAATCCTTTAAAAC
GAAGGCAATATGCGATGTTTGACAATTCGTGGAATCATGCCCTATCGTGCTGGATTGCAATTTCT
CG
Found at i:88349610 original size:20 final size:20
Alignment explanation
Indices: 88349582--88349619 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
88349572 TTATTAGTAG
88349582 AATTACAGCAAACAACAACA
1 AATTACAGCAAACAACAACA
*
88349602 AATTGCAGCAAACAACAA
1 AATTACAGCAAACAACAA
88349620 ACAGAGGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.08, T:0.11
Consensus pattern (20 bp):
AATTACAGCAAACAACAACA
Found at i:88350280 original size:28 final size:28
Alignment explanation
Indices: 88350249--88350303 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
88350239 CATTACGATA
88350249 TATATAAATTA-TATTTT-TATTATATAAT
1 TATAT-AATTATTATTTTAT-TTATATAAT
88350277 TATATAATTATTATTTTATTTATATAA
1 TATATAATTATTATTTTATTTATATAA
88350304 ATAAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 5 0.20
28 19 0.76
29 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
TATATAATTATTATTTTATTTATATAAT
Found at i:88350287 original size:19 final size:20
Alignment explanation
Indices: 88350249--88350290 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
88350239 CATTACGATA
**
88350249 TATATAAATTATATTTTTAT
1 TATATAAATTATATAATTAT
88350269 TATAT-AATTATATAATTAT
1 TATATAAATTATATAATTAT
88350288 TAT
1 TAT
88350291 TTTATTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TATATAAATTATATAATTAT
Found at i:88350313 original size:28 final size:28
Alignment explanation
Indices: 88350254--88350318 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
88350244 CGATATATAT
* *
88350254 AAATTA-TATTTTTATTATATAATTATA
1 AAATTATTATTTTTATTATATAAATAAA
*
88350281 TAATTATTA-TTTTATTTATATAAATAAA
1 AAATTATTATTTTTA-TTATATAAATAAA
88350309 AAATTTATTA
1 AAA-TTATTA
88350319 ATTAAAAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
27 10 0.32
28 15 0.48
29 6 0.19
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
AAATTATTATTTTTATTATATAAATAAA
Found at i:88350326 original size:16 final size:16
Alignment explanation
Indices: 88350294--88350358 Score: 69
Period size: 16 Copynumber: 4.0 Consensus size: 16
88350284 TTATTATTTT
*
88350294 ATTTATATAAATAAAAA
1 ATTTAT-TAATTAAAAA
88350311 ATTTATTAATTAAAAA
1 ATTTATTAATTAAAAA
* * *
88350327 ACTTTA-AAATTAATAT
1 A-TTTATTAATTAAAAA
88350343 ATTTATTAATTAAAAA
1 ATTTATTAATTAAAAA
88350359 TAAATAATAA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
15 4 0.10
16 25 0.64
17 10 0.26
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTTATTAATTAAAAA
Found at i:88350578 original size:23 final size:24
Alignment explanation
Indices: 88350541--88350589 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
88350531 TAAAATCAAA
*
88350541 TTATTACCTTAATTTTCTATTTTT
1 TTATTACCTTAATTTTCCATTTTT
* *
88350565 TTATTAGC-TAATTTTCCCTTTTT
1 TTATTACCTTAATTTTCCATTTTT
88350588 TT
1 TT
88350590 CTCATTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.18, C:0.14, G:0.02, T:0.65
Consensus pattern (24 bp):
TTATTACCTTAATTTTCCATTTTT
Found at i:88352379 original size:19 final size:19
Alignment explanation
Indices: 88352345--88352381 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
88352335 AACACTTAGG
* *
88352345 GGTATTTTGGTCATTTTCA
1 GGTATTTTGATAATTTTCA
88352364 GGTATTTTGATAATTTTC
1 GGTATTTTGATAATTTTC
88352382 TTTTATTACG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.19, T:0.54
Consensus pattern (19 bp):
GGTATTTTGATAATTTTCA
Found at i:88352723 original size:28 final size:27
Alignment explanation
Indices: 88352677--88352780 Score: 93
Period size: 28 Copynumber: 3.7 Consensus size: 27
88352667 ATATACATGT
* *
88352677 ATATGGCCCACTAAGCCCAATCTCTTTC
1 ATATGG-CCATTAGGCCCAATCTCTTTC
* *
88352705 ATATAGCCTATTAGGCCCAATCATATTT-
1 ATATGGCC-ATTAGGCCCAATC-TCTTTC
* * *
88352733 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGG-CCATTAGGCCC-AATCTCTTTC
88352762 ATATGGCCATTAGGCCCAA
1 ATATGGCCATTAGGCCCAA
88352781 ATCACATTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
27 4 0.07
28 42 0.69
29 15 0.25
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (27 bp):
ATATGGCCATTAGGCCCAATCTCTTTC
Found at i:88352774 original size:56 final size:57
Alignment explanation
Indices: 88352671--88352790 Score: 145
Period size: 56 Copynumber: 2.1 Consensus size: 57
88352661 AAATCCATAT
* * * *
88352671 ACATGTATATGGCCCACTAAGCCCAATCTCTTTCATATAGCCTATTAGGCCC-AATC
1 ACATTTATGTGGCCCACTAAGCCCAATCACATTCATATAGCCTATTAGGCCCAAATC
* * * *
88352727 ATATTTATGTGGCCCATTAGGCCCAAATCACATTCATATGGCC-ATTAGGCCCAAATC
1 ACATTTATGTGGCCCACTAAGCCC-AATCACATTCATATAGCCTATTAGGCCCAAATC
88352784 ACATTTA
1 ACATTTA
88352791 CAGTCATGCT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
56 28 0.53
57 25 0.47
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (57 bp):
ACATTTATGTGGCCCACTAAGCCCAATCACATTCATATAGCCTATTAGGCCCAAATC
Found at i:88352781 original size:28 final size:28
Alignment explanation
Indices: 88352702--88352788 Score: 113
Period size: 28 Copynumber: 3.1 Consensus size: 28
88352692 CCCAATCTCT
* *
88352702 TTCATATAGCCTATTAGGCCC-AATCATA
1 TTCATATGGCC-ATTAGGCCCAAATCACA
* *
88352730 TTTATGTGGCCCATTAGGCCCAAATCACA
1 TTCATATGG-CCATTAGGCCCAAATCACA
88352759 TTCATATGGCCATTAGGCCCAAATCACA
1 TTCATATGGCCATTAGGCCCAAATCACA
88352787 TT
1 TT
88352789 TACAGTCATG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
28 36 0.71
29 15 0.29
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (28 bp):
TTCATATGGCCATTAGGCCCAAATCACA
Found at i:88359010 original size:20 final size:20
Alignment explanation
Indices: 88358985--88359028 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
88358975 AAAGAGAGTT
88358985 GTTTTCGTAAATCATCTACA
1 GTTTTCGTAAATCATCTACA
*
88359005 GTTTTCGTAAATCCTCTACA
1 GTTTTCGTAAATCATCTACA
88359025 GTTT
1 GTTT
88359029 AAATATCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.43
Consensus pattern (20 bp):
GTTTTCGTAAATCATCTACA
Found at i:88360519 original size:28 final size:28
Alignment explanation
Indices: 88360471--88360573 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 28
88360461 ACATACCTGT
* *
88360471 ATATGG-CCACTATGCCCAATCTCTTTC
1 ATATGGCCCATTAGGCCCAATCTCTTTC
*
88360498 ATATGGCCCATTAGGCCCAATCATATTT-
1 ATATGGCCCATTAGGCCCAATC-TCTTTC
** * *
88360526 ATATGGCCCATTAGGCTTAAATCACATTC
1 ATATGGCCCATTAGGC-CCAATCTCTTTC
*
88360555 ATAT-GTCCATTAGGCCCAA
1 ATATGGCCCATTAGGCCCAA
88360574 ATCACATTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
27 8 0.13
28 41 0.67
29 12 0.20
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCTCTTTC
Found at i:88360575 original size:28 final size:29
Alignment explanation
Indices: 88360495--88360581 Score: 115
Period size: 28 Copynumber: 3.1 Consensus size: 29
88360485 CCCAATCTCT
*
88360495 TTCATATGGCCCATTAGGCCC-AATCATA
1 TTCATATGGCCCATTAGGCCCAAATCACA
* **
88360523 TTTATATGGCCCATTAGGCTTAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
*
88360552 TTCATAT-GTCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
88360580 TT
1 TT
88360582 TATAGTCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
28 38 0.76
29 12 0.24
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACA
Found at i:88364564 original size:22 final size:22
Alignment explanation
Indices: 88364494--88364566 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
88364484 CAAATCCTAA
* * *
88364494 ACCTTAAAACCTTGAACT-CAG
1 ACCTTAAAACCCTAAACTATAG
* * *
88364515 AACC-TAAAACACTAAACCATAA
1 -ACCTTAAAACCCTAAACTATAG
*
88364537 ATCTTAAAACCCTAAACTATAG
1 ACCTTAAAACCCTAAACTATAG
88364559 ACCTTAAA
1 ACCTTAAA
88364567 CATTAAACCT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
21 12 0.32
22 26 0.68
ACGTcount: A:0.48, C:0.26, G:0.04, T:0.22
Consensus pattern (22 bp):
ACCTTAAAACCCTAAACTATAG
Found at i:88365706 original size:83 final size:83
Alignment explanation
Indices: 88365550--88365707 Score: 217
Period size: 83 Copynumber: 1.9 Consensus size: 83
88365540 ATTTTATTTT
** * * * * *
88365550 AGGGGGCTAAAGTGTAATTTTATTATATATTAATTTATAATTTTTTATTTATAAGAAGACTGAAT
1 AGGGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAA
*
88365615 TGACAATTTTTCTTTTGG
66 TGAAAATTTTTCTTTTGG
* * *
88365633 AGGGGGTTAAAGTGTAATTCAACTATGTATTAATTTATAATTTTCTATTTATAAGAGGAATAAAA
1 AGGGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAA
88365698 TGAAAATTTT
66 TGAAAATTTT
88365708 CATTTTTGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
83 64 1.00
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44
Consensus pattern (83 bp):
AGGGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAA
TGAAAATTTTTCTTTTGG
Found at i:88371532 original size:43 final size:43
Alignment explanation
Indices: 88371469--88371675 Score: 342
Period size: 43 Copynumber: 4.8 Consensus size: 43
88371459 TTTATTGGAA
* *
88371469 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
88371512 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
88371555 GAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
* * *
88371598 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCATTTGTGCG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
88371641 TAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCG
88371676 CTTTTTTTAC
Statistics
Matches: 152, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 152 1.00
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:88371785 original size:31 final size:29
Alignment explanation
Indices: 88371750--88371828 Score: 77
Period size: 31 Copynumber: 2.6 Consensus size: 29
88371740 CTTCCTACAT
*
88371750 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAA-A-AACAAATATAACA
* * *
88371781 TAAAATGCAGCCAAAAAACAAATTTAACA
1 TAAAATCCAACCAAAAAACAAATATAACA
*
88371810 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
88371829 TATTAATTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 12 0.30
30 1 0.03
31 27 0.68
ACGTcount: A:0.63, C:0.18, G:0.03, T:0.16
Consensus pattern (29 bp):
TAAAATCCAACCAAAAAACAAATATAACA
Found at i:88371812 original size:29 final size:31
Alignment explanation
Indices: 88371750--88371814 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 31
88371740 CTTCCTACAT
*
88371750 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAATACAACAAATATAACA
* * *
88371781 TAAAATGCAGCCAAA-A-AACAAATTTAACA
1 TAAAATCCAACCAAATACAACAAATATAACA
88371810 TAAAA
1 TAAAA
88371815 AATACAACCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 16 0.53
30 1 0.03
31 13 0.43
ACGTcount: A:0.62, C:0.17, G:0.03, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAATACAACAAATATAACA
Found at i:88372098 original size:21 final size:21
Alignment explanation
Indices: 88372074--88372119 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
88372064 GCTCGTGCCT
*
88372074 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
88372095 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
88372116 CTGC
1 CTGC
88372120 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:88374022 original size:82 final size:82
Alignment explanation
Indices: 88373869--88374023 Score: 211
Period size: 82 Copynumber: 1.9 Consensus size: 82
88373859 TTATTTTTAG
** * * * * *
88373869 GGGGCTAAAGTGTAATTTTATTATATATTAATTTATAATTTTTTATTTATAAGAAGACTGAATTG
1 GGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAATG
*
88373934 ACAATTTTTCTTTTGGA
66 AAAATTTTTCTTTTGGA
* * *
88373951 GGGGTTAAAGTGTAATTCAACTATGTATTAATTTATAATTTTCTATTTATAAGAGGAATAAAATG
1 GGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAATG
88374016 AAAATTTT
66 AAAATTTT
88374024 CATTTTTGGG
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
82 62 1.00
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.45
Consensus pattern (82 bp):
GGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAATG
AAAATTTTTCTTTTGGA
Found at i:88381168 original size:22 final size:22
Alignment explanation
Indices: 88381098--88381170 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
88381088 CAAATCCTAA
* * *
88381098 ACCTTAAAACCTTGAACT-CAG
1 ACCTTAAAACCCTAAACTATAG
* * *
88381119 AACC-TAAAACACTAAACCATAA
1 -ACCTTAAAACCCTAAACTATAG
*
88381141 ATCTTAAAACCCTAAACTATAG
1 ACCTTAAAACCCTAAACTATAG
88381163 ACCTTAAA
1 ACCTTAAA
88381171 CATTAAACCT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
21 12 0.32
22 26 0.68
ACGTcount: A:0.48, C:0.26, G:0.04, T:0.22
Consensus pattern (22 bp):
ACCTTAAAACCCTAAACTATAG
Found at i:88382306 original size:83 final size:83
Alignment explanation
Indices: 88382152--88382307 Score: 213
Period size: 83 Copynumber: 1.9 Consensus size: 83
88382142 TTTTATTTTA
** * * * * *
88382152 GGGGCTAAAGTGTAATTTTATTATATATTAATTTATAATTTTTTATTTATAAGAAGACTGAATTG
1 GGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAATG
*
88382217 ACAATTTTTCTTTTGGAG
66 AAAATTTTTCTTTTGGAG
* * *
88382235 GGGGTTAAAGTGTAATTCAACTATGTATTAATTTATAATTTTCTATTTATAAGAGGAATAAAATG
1 GGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAATG
88382300 AAAATTTT
66 AAAATTTT
88382308 CATTTTTGGG
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
83 62 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.44
Consensus pattern (83 bp):
GGGGCTAAAGTGTAATTCAACTATATATTAATTTATAATTTTCTATTTATAAGAAGAATAAAATG
AAAATTTTTCTTTTGGAG
Found at i:88388106 original size:43 final size:43
Alignment explanation
Indices: 88388043--88388250 Score: 335
Period size: 43 Copynumber: 4.8 Consensus size: 43
88388033 TTTATTGGAA
* *
88388043 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
88388086 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
* *
88388129 GAAAGCGCCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAACGTCAAGGC-TTTTAGCGGCGTTTGTGGG
* * *
88388173 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCATTTGTGCG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
88388216 TAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCG
88388251 CTTTTTTTAC
Statistics
Matches: 152, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
43 112 0.74
44 40 0.26
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:88388193 original size:87 final size:86
Alignment explanation
Indices: 88388048--88388250 Score: 343
Period size: 87 Copynumber: 2.3 Consensus size: 86
88388038 TGGAAAAAAA
*
88388048 CGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAACGTCAAGGCTTT
1 CGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAACGTCAAGGCTTT
* *
88388113 TAGCGGCGTTTGTGGGGAAAG
66 TAGCGGCATTTGTGCGGAAAG
* *
88388134 CGCCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCAAGGCTT
1 CGCCGCTAAACGTCAAGGC-TTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAACGTCAAGGCTT
*
88388199 TTAGCGGCATTTGTGCGTAAAG
65 TTAGCGGCATTTGTGCGGAAAG
88388221 CGCCGCTAAACGTCAAGGCTTTTAGCGGCG
1 CGCCGCTAAACGTCAAGGCTTTTAGCGGCG
88388251 CTTTTTTTAC
Statistics
Matches: 110, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
86 29 0.26
87 81 0.74
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (86 bp):
CGCCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAACGTCAAGGCTTT
TAGCGGCATTTGTGCGGAAAG
Found at i:88388360 original size:31 final size:31
Alignment explanation
Indices: 88388325--88388405 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
88388315 CTTCCTACAT
* * *
88388325 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAAAAACAAATATAACA
* * *
88388356 TAAAATGCAGCCAAAAAAAACAAATTTAACA
1 TAAAATCCAACCAAAAAAAACAAATATAACA
*
88388387 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
88388406 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.64, C:0.17, G:0.02, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAAAAACAAATATAACA
Found at i:88388675 original size:21 final size:21
Alignment explanation
Indices: 88388651--88388696 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
88388641 GCTCGTGCCT
*
88388651 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
88388672 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
88388693 CTGC
1 CTGC
88388697 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:88394341 original size:9 final size:9
Alignment explanation
Indices: 88394327--88394526 Score: 113
Period size: 9 Copynumber: 22.1 Consensus size: 9
88394317 TATTTAAGTA
88394327 TTATGTAAG
1 TTATGTAAG
*
88394336 TTATGTAAT
1 TTATGTAAG
*
88394345 TTATGATATG
1 TTATG-TAAG
* * *
88394355 ATATAT-AT
1 TTATGTAAG
*
88394363 TTATGTAAA
1 TTATGTAAG
* *
88394372 TTATAT-AT
1 TTATGTAAG
*
88394380 TTATCTAAG
1 TTATGTAAG
*
88394389 TTATAT-AG
1 TTATGTAAG
88394397 TTATGTAAG
1 TTATGTAAG
*
88394406 TTATGTAAA
1 TTATGTAAG
*
88394415 TTATGATAAAA
1 TTATG-T-AAG
*
88394426 TATATTTAAG
1 T-TATGTAAG
*
88394436 TATTATGTAAT
1 --TTATGTAAG
88394447 TTATGTAAG
1 TTATGTAAG
* *
88394456 TTATAT-AT
1 TTATGTAAG
88394464 TTATGTAAG
1 TTATGTAAG
* *
88394473 TTATAT-AT
1 TTATGTAAG
*
88394481 TTATCTAAG
1 TTATGTAAG
*
88394490 TTATATAAG
1 TTATGTAAG
*
88394499 TTATGTATG
1 TTATGTAAG
*
88394508 TTATATAAG
1 TTATGTAAG
88394517 TTATGTAAG
1 TTATGTAAG
88394526 T
1 T
88394527 AGCGGAATTA
Statistics
Matches: 144, Mismatches: 36, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
8 29 0.20
9 92 0.64
10 8 0.06
11 11 0.08
12 4 0.03
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (9 bp):
TTATGTAAG
Found at i:88394378 original size:17 final size:17
Alignment explanation
Indices: 88394327--88394526 Score: 174
Period size: 17 Copynumber: 11.6 Consensus size: 17
88394317 TATTTAAGTA
*
88394327 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATAT-AT
* *
88394345 TTATGATATGATATATAT
1 TTATG-TAAGTTATATAT
*
88394363 TTATGTAAATTATATAT
1 TTATGTAAGTTATATAT
* *
88394380 TTATCTAAGTTATATAG
1 TTATGTAAGTTATATAT
* *
88394397 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATAT-AT
*
88394415 TTATGATAA--AATATAT
1 TTATG-TAAGTTATATAT
* *
88394431 TTAAGT-A-TTATGTAAT
1 TTATGTAAGTTATAT-AT
88394447 TTATGTAAGTTATATAT
1 TTATGTAAGTTATATAT
88394464 TTATGTAAGTTATATAT
1 TTATGTAAGTTATATAT
* *
88394481 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATAT-AT
* *
88394499 TTATGTATGTTATATAAG
1 TTATGTAAGTTATAT-AT
88394517 TTATGTAAGT
1 TTATGTAAGT
88394527 AGCGGAATTA
Statistics
Matches: 149, Mismatches: 25, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
14 1 0.01
15 4 0.03
16 12 0.08
17 73 0.49
18 49 0.33
19 10 0.07
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (17 bp):
TTATGTAAGTTATATAT
Found at i:88394445 original size:111 final size:117
Alignment explanation
Indices: 88394314--88394526 Score: 287
Period size: 111 Copynumber: 1.8 Consensus size: 117
88394304 ATGATATGAT
*
88394314 ATATATTTAAGTATTATGTAAGTTATGTAA-TT-TATGA-TATG-A-TATATATTTATGTAAATT
1 ATATATTTAAGTATTATGTAAGTTATGTAAGTTATAT-ATTATGAAGTATATATTTATCTAAATT
*
88394374 ATAT-ATTTATCTAAGTTATAT-AGTTATGTAAGTTATGTAAATTATGATAAA
65 ATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATAAA
* *
88394425 ATATATTTAAGTATTATGTAATTTATGTAAGTTATATATTTATGTAAGTTATATATTTATCTAAG
1 ATATATTTAAGTATTATGTAAGTTATGTAAGTTATATA-TTATG-AAG-TATATATTTATCTAAA
* *
88394490 TTATATAAGTTATGTATGTTATATAAGTTATGTAAGT
63 TTATATAAGTTATCTAAGTTATATAAGTTATGTAAGT
88394527 AGCGGAATTA
Statistics
Matches: 86, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
111 29 0.34
112 3 0.03
113 3 0.03
114 4 0.05
116 1 0.01
118 20 0.23
119 14 0.16
120 12 0.14
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (117 bp):
ATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTATGAAGTATATATTTATCTAAATTA
TATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATAAA
Found at i:88394552 original size:15 final size:15
Alignment explanation
Indices: 88394532--88394587 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
88394522 TAAGTAGCGG
88394532 AATTAAATAATATTT
1 AATTAAATAATATTT
88394547 AATTAAATAATATTT
1 AATTAAATAATATTT
* *
88394562 -ATAAAATTAT-TTT
1 AATTAAATAATATTT
*
88394575 AATTAAGTAATAT
1 AATTAAATAATAT
88394588 ACATGTCGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
13 3 0.09
14 15 0.44
15 16 0.47
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
AATTAAATAATATTT
Found at i:88399088 original size:10 final size:11
Alignment explanation
Indices: 88399067--88399117 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
88399057 ACTAAACCAC
88399067 TTTTCATATATA
1 TTTT-ATATATA
88399079 TATTTATATATA
1 T-TTTATATATA
*
88399091 TTTTAAAATAATA
1 TTTT-ATAT-ATA
88399104 TTTTATATATA
1 TTTTATATATA
88399115 TTT
1 TTT
88399118 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:88399126 original size:15 final size:15
Alignment explanation
Indices: 88399106--88399137 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
88399096 AAATAATATT
*
88399106 TTATATATATTTATC
1 TTATATACATTTATC
88399121 TTATATACATTTATC
1 TTATATACATTTATC
88399136 TT
1 TT
88399138 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:88400206 original size:41 final size:40
Alignment explanation
Indices: 88400149--88400326 Score: 230
Period size: 41 Copynumber: 4.4 Consensus size: 40
88400139 GTTATGAGAT
* *
88400149 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTTTGGC
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCT-GC
** *
88400190 TTTTAGCGGCGTTTTACCTAACGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCT-GC
*
88400231 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGC
* * * * *
88400271 TTTTAGCGGCGTTTTAGTAAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTA-CAGAAAGCGCCGCTAATGCTCTGC
88400312 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
88400327 TTTTAGAACG
Statistics
Matches: 125, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 17 0.14
41 108 0.86
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGC
Found at i:88400348 original size:40 final size:40
Alignment explanation
Indices: 88400172--88400349 Score: 157
Period size: 41 Copynumber: 4.4 Consensus size: 40
88400162 TTACCGAAAG
* * * *
88400172 CGCCGCTAATGCTTTGGCTTTTAGCGGCGTTTTACCTAACG--
1 CGCCGCTAATGCTCT-GTTTTTAGCGGCGTTTT--TTAAAGAA
* *
88400213 CGCCGCTAATGCTCTGGCTTTTAGCGGCG--TTTTACAGAAA
1 CGCCGCTAATGCTCT-GTTTTTAGCGGCGTTTTTTAAAG-AA
* *
88400253 GCGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTAGTAAAAAA
1 -CGCCGCTAATGCTCTGTTTTTAGCGGCGTTTT-TTAAAGAA
* **
88400295 CGCCGCTATTGCTCTGTTTTTAGCGGCGTTTTTTTTAGAA
1 CGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTTTAAAGAA
*
88400335 CGCCGCTATTGCTCT
1 CGCCGCTAATGCTCT
88400350 AAATTTTAAA
Statistics
Matches: 117, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
37 3 0.03
39 2 0.02
40 31 0.26
41 74 0.63
42 4 0.03
43 3 0.03
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (40 bp):
CGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTTTAAAGAA
Found at i:88407247 original size:23 final size:23
Alignment explanation
Indices: 88407219--88407276 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
88407209 CTTAATGTCT
88407219 GCTACCCTAGCATGAAAAAGTCA
1 GCTACCCTAGCATGAAAAAGTCA
*
88407242 GCTACCCTAGCATGAAAAAGTCT
1 GCTACCCTAGCATGAAAAAGTCA
*
88407265 GCTTCCCTAGCA
1 GCTACCCTAGCA
88407277 CGCATTCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (23 bp):
GCTACCCTAGCATGAAAAAGTCA
Found at i:88418716 original size:21 final size:21
Alignment explanation
Indices: 88418678--88418717 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
88418668 AAAATAAAAA
* *
88418678 TTTCAAATTTTTTTAAAAACT
1 TTTCAAATTTTATAAAAAACT
*
88418699 TTTCAGATTTTATAAAAAA
1 TTTCAAATTTTATAAAAAA
88418718 TTCAAAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.47
Consensus pattern (21 bp):
TTTCAAATTTTATAAAAAACT
Found at i:88422081 original size:38 final size:39
Alignment explanation
Indices: 88422030--88422112 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
88422020 TGTTGATGAT
*
88422030 AATTCAATATGGTTATG-TTTTTTTTATTTTTAGAGTTC
1 AATTCTATATGGTTATGTTTTTTTTTATTTTTAGAGTTC
88422068 AATTCTATATGGTTATGTTTTTTTTTATTTTTAGAGTTC
1 AATTCTATATGGTTATGTTTTTTTTTATTTTTAGAGTTC
88422107 AATTCT
1 AATTCT
88422113 TACTCACTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 16 0.37
39 27 0.63
ACGTcount: A:0.23, C:0.06, G:0.12, T:0.59
Consensus pattern (39 bp):
AATTCTATATGGTTATGTTTTTTTTTATTTTTAGAGTTC
Found at i:88422259 original size:66 final size:65
Alignment explanation
Indices: 88422189--88422387 Score: 192
Period size: 66 Copynumber: 3.2 Consensus size: 65
88422179 AAATATATTT
*
88422189 AATATTAATTATTTCAAATTATCTTTTATAGTATAATACATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTATCTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAA
88422254 G
65 G
* *
88422255 AATATTAATTA-TTAAGA--A--TTTTAT--TA-AAT-TA-TAT-ATTTTAATTAAGA-T-ATAT
1 AATATTAATTATTTAA-ATTATCTTTTATAGTATAATATATTATGA-TTTGAGTAA-ATTCATAT
**
88422307 -TT
63 AAG
* *
88422309 AATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTATCTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAA
88422374 G
65 G
88422375 AATATTAATTATT
1 AATATTAATTATT
88422388 AAGAATTTTA
Statistics
Matches: 103, Mismatches: 12, Indels: 37
0.68 0.08 0.24
Matches are distributed among these distances:
54 10 0.10
55 6 0.06
56 15 0.15
57 3 0.03
58 3 0.03
59 8 0.08
61 8 0.08
62 2 0.02
63 4 0.04
64 13 0.13
65 9 0.09
66 22 0.21
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.48
Consensus pattern (65 bp):
AATATTAATTATTTAAATTATCTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAG
Found at i:88422431 original size:120 final size:120
Alignment explanation
Indices: 88422151--88422416 Score: 471
Period size: 120 Copynumber: 2.2 Consensus size: 120
88422141 AATTATTTTA
* *
88422151 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATCTTTT
88422216 ATAGTATAATACATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATAATACATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
88422271 AATTTTATTAAATTATATATTTTAATTAAGATATATTTAATAATAATTATGTT-AAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATCTTT
* *
88422335 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATAATACATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
88422391 AATTTTATTAAATTATATATTTTAAT
1 AATTTTATTAAATTATATATTTTAAT
88422417 AATAATTATG
Statistics
Matches: 140, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
120 138 0.99
121 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATCTTTT
ATAGTATAATACATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:88422525 original size:18 final size:18
Alignment explanation
Indices: 88422497--88422547 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
88422487 ATTATTAAGA
88422497 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
88422514 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
*
88422530 A-TTTAATAATAATTATAT
1 ATTTTAATTA-AATTATAT
88422548 TTAAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 7 0.24
16 7 0.24
17 5 0.17
18 10 0.34
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:88422536 original size:105 final size:105
Alignment explanation
Indices: 88422301--88422521 Score: 399
Period size: 105 Copynumber: 2.1 Consensus size: 105
88422291 TTTAATTAAG
* *
88422301 ATATA-TTTAATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAA
1 ATATATTTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAA
88422365 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
66 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
88422405 ATATATTTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATTATTTGAGTAAA
1 ATATATTTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAA
*
88422470 TTCATATCAGAATATTAATTATTAAGAATTTTATTAAATT
66 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
88422510 ATATATTTTAAT
1 ATATATTTTAAT
88422522 TAAAATATAT
Statistics
Matches: 112, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
104 5 0.04
105 107 0.96
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.50
Consensus pattern (105 bp):
ATATATTTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAA
TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:88422786 original size:16 final size:16
Alignment explanation
Indices: 88422767--88422818 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
88422757 GATTTGCTAT
* *
88422767 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
88422783 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
88422799 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
88422815 TACA
1 TACA
88422819 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:88425077 original size:3 final size:3
Alignment explanation
Indices: 88425069--88425114 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
88425059 CAATGTTTCT
* *
88425069 TTA TTA TTA TCA TTA TCTC TGTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TT
88425115 CCTTCCGTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 33 0.89
4 4 0.11
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:88437524 original size:43 final size:44
Alignment explanation
Indices: 88437470--88437564 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 44
88437460 GCCTCAGCGA
* * *
88437470 AGCAGATTGAAGTCACTAGTCTTATCTTCC-TGAAG-TGCAGTGG
1 AGCAGACTGAAGTCACAAGTCTCATC-TCCTTGAAGTTGCAGTGG
*
88437513 AGCAGACTGAAGTTACAAGTCTCATCTCCTTGAAGTTGCAGTGG
1 AGCAGACTGAAGTCACAAGTCTCATCTCCTTGAAGTTGCAGTGG
88437557 AGCAGACT
1 AGCAGACT
88437565 AAATGTACAG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 3 0.07
43 27 0.59
44 16 0.35
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
AGCAGACTGAAGTCACAAGTCTCATCTCCTTGAAGTTGCAGTGG
Found at i:88437886 original size:44 final size:42
Alignment explanation
Indices: 88437830--88437985 Score: 143
Period size: 44 Copynumber: 3.6 Consensus size: 42
88437820 CCACCAAGCT
*
88437830 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATA
1 TTAA-CCCCTAAGCAATAGGGTAACAAGCTGAAGTTTA-AGATA
* ** * *
88437874 TTATCGCCCTAAGCAATAGGGTAACAAGCCAAATTTTAAAATA
1 TTAAC-CCCTAAGCAATAGGGTAACAAGCTGAAGTTTAAGATA
* * *
88437917 TTTAACCCTCTAAGCAATAGGGTAACAAGTTG-AGCTTACAGATC
1 -TTAACCC-CTAAGCAATAGGGTAACAAGCTGAAGTTTA-AGATA
* * *
88437961 TAAACCCCTAAGCAGTAGGGAAACA
1 TTAACCCCTAAGCAATAGGGTAACA
88437986 GATCAATGAT
Statistics
Matches: 91, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
42 16 0.18
43 17 0.19
44 58 0.64
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (42 bp):
TTAACCCCTAAGCAATAGGGTAACAAGCTGAAGTTTAAGATA
Found at i:88438130 original size:42 final size:42
Alignment explanation
Indices: 88438078--88438200 Score: 203
Period size: 41 Copynumber: 3.0 Consensus size: 42
88438068 GAGCAGCTAA
* *
88438078 AAGCCACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCG
1 AAGCTACAGCATATCTCCTTGAAGTTTCAGTGGAATTGATCG
* *
88438120 AAGCTACAGCATATCTCCTTGAAGTTTCAGTGG-ATTAAGCG
1 AAGCTACAGCATATCTCCTTGAAGTTTCAGTGGAATTGATCG
88438161 AAGCTACAGCATATCTCCTTGAAGTTTCAGTGGAATTGAT
1 AAGCTACAGCATATCTCCTTGAAGTTTCAGTGGAATTGAT
88438201 TAAAGTCACG
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
41 39 0.53
42 35 0.47
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (42 bp):
AAGCTACAGCATATCTCCTTGAAGTTTCAGTGGAATTGATCG
Found at i:88439012 original size:11 final size:11
Alignment explanation
Indices: 88438996--88439026 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
88438986 ACGGCGTTCC
88438996 GGTGACCGGCT
1 GGTGACCGGCT
88439007 GGTGACCGGCT
1 GGTGACCGGCT
88439018 GGTGACCGG
1 GGTGACCGG
88439027 TCCCCTGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.26, G:0.48, T:0.16
Consensus pattern (11 bp):
GGTGACCGGCT
Found at i:88439870 original size:3 final size:3
Alignment explanation
Indices: 88439831--88439856 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
88439821 TATACATTTA
88439831 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
88439857 GTTTTGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:88440161 original size:3 final size:3
Alignment explanation
Indices: 88440153--88440195 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
88440143 CAATGTTTCT
* *
88440153 TTA TTA TTA TCA TTA TCTC TGTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA TTA TTA TTA TT
88440196 CCTTCCGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
3 30 0.88
4 4 0.12
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:88450590 original size:69 final size:69
Alignment explanation
Indices: 88450475--88450616 Score: 257
Period size: 69 Copynumber: 2.1 Consensus size: 69
88450465 GAACCCAAAC
* *
88450475 TTGCACTCATAAACTCCCCTCAAGGATAATATTTTGCTCTAATGACTCGTGCAAATAAGCAATTG
1 TTGCACTCATAAACTCCCCTCAAGGATAATAATTTGCTCTAATGACTCGTGCAAATAAGCAACTG
88450540 AGAT
66 AGAT
*
88450544 TTGCACTCATAAACTCCCCTCAAGGATAATAATTTGCTCTACTGACTCGTGCAAATAAGCAACTG
1 TTGCACTCATAAACTCCCCTCAAGGATAATAATTTGCTCTAATGACTCGTGCAAATAAGCAACTG
88450609 AGAT
66 AGAT
88450613 TTGC
1 TTGC
88450617 GATTAGTTTC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (69 bp):
TTGCACTCATAAACTCCCCTCAAGGATAATAATTTGCTCTAATGACTCGTGCAAATAAGCAACTG
AGAT
Found at i:88451283 original size:30 final size:30
Alignment explanation
Indices: 88451247--88451308 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
88451237 ACTCCTTACC
88451247 ATCCAATCTAGTTACTATGCACGAGAAAAG
1 ATCCAATCTAGTTACTATGCACGAGAAAAG
*
88451277 ATCCAATCTAGTTACTATGCATGAGAAAAG
1 ATCCAATCTAGTTACTATGCACGAGAAAAG
88451307 AT
1 AT
88451309 TCTTTCTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (30 bp):
ATCCAATCTAGTTACTATGCACGAGAAAAG
Found at i:88454748 original size:18 final size:18
Alignment explanation
Indices: 88454725--88454760 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
88454715 CCGGATTCCC
*
88454725 CTCTTCTCTCTCCCTTCT
1 CTCTTCCCTCTCCCTTCT
*
88454743 CTCTTCCCTCTCTCTTCT
1 CTCTTCCCTCTCCCTTCT
88454761 TTTTTCTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (18 bp):
CTCTTCCCTCTCCCTTCT
Found at i:88455238 original size:3 final size:3
Alignment explanation
Indices: 88455214--88455284 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
88455204 AATATCCTTG
* * * **
88455214 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
88455261 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
88455285 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:88455281 original size:23 final size:22
Alignment explanation
Indices: 88455227--88455287 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
88455217 TTTTTATATT
*
88455227 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
88455248 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
88455270 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
88455288 CGTGTATACC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:88455294 original size:23 final size:23
Alignment explanation
Indices: 88455250--88455295 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
88455240 GTATTACCAT
*
88455250 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
88455273 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
88455296 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:88467382 original size:56 final size:56
Alignment explanation
Indices: 88467281--88467389 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 56
88467271 AAGGAAAATT
**
88467281 AACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATC
1 AACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATC
** *
88467337 AACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
1 AACTCATATTGCGAG-AGTTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTA
88467390 GTTTATGTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 45 0.96
57 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (56 bp):
AACTCATATTGCGAGAGTTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATC
Found at i:88467505 original size:72 final size:73
Alignment explanation
Indices: 88467333--88468177 Score: 990
Period size: 74 Copynumber: 11.4 Consensus size: 73
88467323 AGGTATTTTT
* * * * * * * *
88467333 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATG-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
88467397 TTTT---A
66 TTTTCAAA
** ** *
88467402 AATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
88467467 TTTTC-AA
66 TTTTCAAA
*
88467474 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
88467538 TTGTCAAAAA
66 TTTTC--AAA
** * *
88467548 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTGAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
88467613 TTTTC-AA
66 TTTTCAAA
*
88467620 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
88467684 TTGTCAAAAA
66 TTTTC--AAA
** * *
88467694 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
88467759 TTTTC-AA
66 TTTTCAAA
*
88467766 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
88467830 TTGTCAAAAAA
66 TTTTC---AAA
* * ** * *
88467841 AATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAAGACACATTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
88467906 TTTTCAAGAA
66 TTTTC-A-AA
* * * *
88467916 AATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-----T-AA----T-T
*
88467981 TCAATTTATGTTTTTCAAA
55 TCAATTTCTGTTTTTCAAA
88468000 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
88468065 TTTTTCAAA
65 TTTTTCAAA
* * * * * *
88468074 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTAC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-G
***
88468139 TTTAAAAAA
65 TTTTTCAAA
*
88468148 AATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATCAACTCATATTGCGAGAGGTGAGTTGA
88468178 AACTTTTAAT
Statistics
Matches: 676, Mismatches: 70, Indels: 55
0.84 0.09 0.07
Matches are distributed among these distances:
69 54 0.08
70 4 0.01
71 12 0.02
72 181 0.27
73 10 0.01
74 227 0.34
75 115 0.17
76 4 0.01
78 2 0.00
79 1 0.00
80 1 0.00
81 1 0.00
84 47 0.07
85 2 0.00
86 15 0.02
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (73 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTTTCAAA
Found at i:88467593 original size:146 final size:146
Alignment explanation
Indices: 88467333--88468312 Score: 1110
Period size: 146 Copynumber: 6.8 Consensus size: 146
88467323 AGGTATTTTT
* * * * * * * * *
88467333 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGT
1 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* **
88467398 T-T----TAAATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
88467458 AATTTTTGTTTTTCAA
131 AATTTTTGTTTTTCAA
88467474 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
88467539 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTG
66 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
88467604 AATTTTTGTTTTTCAA
131 AATTTTTGTTTTTCAA
88467620 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
88467685 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
88467750 AATTTTTATTTTTCAA
131 AATTTTTGTTTTTCAA
88467766 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
** * * ** *
88467831 TGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAAGACACATTGAGGTATTTT
66 TGTC-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* *
88467896 CAATTTCTGCTTTTCAAGAA
130 CAATTTTTGTTTTTC---AA
* * * *
88467916 AATCAACTCATATTG-TGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTATTTTCAATTCCTG
1 AATCAACTCATATTGCT-AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA----T-
* *** **
88467980 TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
60 TTC--TGT-TG--TCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCT
*
88468045 GAGGTAATTTCAATTTCTGTTTTTTCAAA
120 GAGGTAATTTCAATTTTTG-TTTTTC-AA
* * * * * * *
88468074 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTAC
1 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-G
* * * * **
88468139 TT-TAAAAAAAATCAACTCATATTGCGAG--A-G-G-TG-G-GT--TGA-A-ACT--TTTAATTT
65 TTGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
** ***
88468190 C--TACTT-TTTCAAA-
130 CAATTTTTGTTTTTCAA
* * * *
88468203 -ATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACATGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
88468267 TGTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
66 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
88468313 TTCACTTGTT
Statistics
Matches: 731, Mismatches: 75, Indels: 70
0.83 0.09 0.08
Matches are distributed among these distances:
127 2 0.00
128 80 0.11
130 2 0.00
131 4 0.01
132 1 0.00
133 4 0.01
134 1 0.00
135 8 0.01
137 2 0.00
138 1 0.00
139 2 0.00
141 58 0.08
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
146 283 0.39
147 65 0.09
148 23 0.03
149 1 0.00
150 54 0.07
151 2 0.00
152 1 0.00
153 3 0.00
154 1 0.00
155 3 0.00
157 2 0.00
158 54 0.07
159 62 0.08
160 6 0.01
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (146 bp):
AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTTTGTTTTTCAA
Found at i:88468135 original size:159 final size:159
Alignment explanation
Indices: 88467838--88468131 Score: 448
Period size: 159 Copynumber: 1.9 Consensus size: 159
88467828 TGTTGTCAAA
* * *
88467838 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* * **
88467903 TGCTTTTCAAGAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
88467968 TTTCAATTCCTGTTCAATTTATGTTTTTC
131 TTTCAATTCCTGTTCAATTTATGTTTTTC
* *
88467997 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* ** *
88468062 TGTTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTA
66 TG-CTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTA
88468125 TTTTCAA
130 TTTTCAA
88468132 ATTCTACTTT
Statistics
Matches: 121, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
158 53 0.44
159 63 0.52
160 5 0.04
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
TTTCAATTCCTGTTCAATTTATGTTTTTC
Found at i:88468216 original size:128 final size:129
Alignment explanation
Indices: 88468056--88468295 Score: 358
Period size: 128 Copynumber: 1.9 Consensus size: 129
88468046 AGGTAATTTC
** * * **
88468056 AATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGA
1 AATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACACGCCGA
*
88468121 GGTATTTTCAAATTCTACTT-TAAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAAACTTTT
66 GGTAATTTCAAATTCT-CTTGTAAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAAACTTTT
* *
88468185 AATTTCTACTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACATGCTGA
1 AATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACACGCCGA
* *
88468249 GGTAATTTCAATTTCTGTTGTAAAAAAAATCAACTCATATTGCGAGA
66 GGTAATTTCAAATTCTCTTGTAAAAAAAATCAACTCATATTGCGAGA
88468296 AATGAGTTGA
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
127 2 0.02
128 84 0.85
129 13 0.13
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (129 bp):
AATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACACGCCGA
GGTAATTTCAAATTCTCTTGTAAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAAACTTTT
Found at i:88469545 original size:10 final size:9
Alignment explanation
Indices: 88469530--88469556 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
88469520 TATTAAGCAT
88469530 AAAAAAATA
1 AAAAAAATA
88469539 AAAAAAATA
1 AAAAAAATA
88469548 AAAAAAATA
1 AAAAAAATA
88469557 TTTTTTACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAATA
Found at i:88470164 original size:3 final size:3
Alignment explanation
Indices: 88470140--88470210 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
88470130 AATATCCTTG
* * * **
88470140 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
88470187 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
88470211 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:88470207 original size:23 final size:22
Alignment explanation
Indices: 88470153--88470213 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
88470143 TTTTTATATT
*
88470153 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
88470174 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
88470196 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
88470214 CGTGTATACC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:88470220 original size:23 final size:23
Alignment explanation
Indices: 88470176--88470221 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
88470166 GTATTACCAT
*
88470176 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
88470199 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
88470222 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:88475861 original size:24 final size:24
Alignment explanation
Indices: 88475831--88475877 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
88475821 ATGAATCGGC
*
88475831 AAAAGTCGAAATGCCGAAAAGTCA
1 AAAAGTCAAAATGCCGAAAAGTCA
**
88475855 AAAAGTCAAAATGTTGAAAAGTC
1 AAAAGTCAAAATGCCGAAAAGTC
88475878 GAAAGTTAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.17
Consensus pattern (24 bp):
AAAAGTCAAAATGCCGAAAAGTCA
Found at i:88475881 original size:8 final size:8
Alignment explanation
Indices: 88475831--88475881 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
88475821 ATGAATCGGC
88475831 AAAAGTCG
1 AAAAGTCG
* *
88475839 AAATGCCG
1 AAAAGTCG
*
88475847 AAAAGTCA
1 AAAAGTCG
88475855 AAAAGTC-
1 AAAAGTCG
*
88475862 AAAATGTTG
1 AAAA-GTCG
88475871 AAAAGTCG
1 AAAAGTCG
88475879 AAA
1 AAA
88475882 GTTAGGCTCT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 4 0.12
8 26 0.76
9 4 0.12
ACGTcount: A:0.53, C:0.12, G:0.20, T:0.16
Consensus pattern (8 bp):
AAAAGTCG
Found at i:88476163 original size:28 final size:28
Alignment explanation
Indices: 88476097--88476198 Score: 98
Period size: 28 Copynumber: 3.6 Consensus size: 28
88476087 GCATAAGTAT
* *
88476097 AATATGATTTGGGCCTAATGGGTCATATG
1 AATATGAATTGGGCCT-ATAGGTCATATG
** * *
88476126 AAGGTAAATTGGGCCTATAGGTCATAAG
1 AATATGAATTGGGCCTATAGGTCATATG
* *
88476154 AATATGAATTGGGCCAGATAGGTCATTTG
1 AATATGAATTGGGCC-TATAGGTCATATG
*
88476183 AATAAG-ATTGGGCCTA
1 AATATGAATTGGGCCTA
88476199 GTGGGCTATA
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
27 1 0.02
28 30 0.52
29 27 0.47
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (28 bp):
AATATGAATTGGGCCTATAGGTCATATG
Found at i:88477095 original size:60 final size:60
Alignment explanation
Indices: 88477002--88477122 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
88476992 ATAAGTTTAT
88477002 TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA
1 TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA
* *
88477062 TAAGTGTGTTTCAGACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA
1 TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA
88477122 T
1 T
88477123 TATTATTTCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (60 bp):
TAAGTATGTTTCAAACCAGATTGTAATAAGGTTTTCATTATGCTATTATTACTTGAAGTA
Found at i:88485861 original size:11 final size:11
Alignment explanation
Indices: 88485787--88485918 Score: 58
Period size: 12 Copynumber: 11.4 Consensus size: 11
88485777 AGTCCAAAAA
*
88485787 TAATATTATTT
1 TAATATTAATT
88485798 TAATAGATTTAATAT
1 TAAT--A-TTAAT-T
88485813 TAA-ATTTAATT
1 TAATA-TTAATT
*
88485824 TAATACTTATTT
1 TAATA-TTAATT
*
88485836 TAATAGT-ATT
1 TAATATTAATT
88485846 T--TATTAATT
1 TAATATTAATT
**
88485855 TAATATTAAAG
1 TAATATTAATT
88485866 TAATTATCTTAATAT
1 TAA-TA--TTAAT-T
88485881 TAA-ATTAAATT
1 TAATATT-AATT
* *
88485892 TAATGTTTATGT
1 TAATATTAAT-T
88485904 TAATATTAATT
1 TAATATTAATT
88485915 TAAT
1 TAAT
88485919 TTGCTACTCT
Statistics
Matches: 92, Mismatches: 14, Indels: 30
0.68 0.10 0.22
Matches are distributed among these distances:
8 3 0.03
9 4 0.04
10 3 0.03
11 31 0.34
12 34 0.37
13 2 0.02
14 8 0.09
15 7 0.08
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (11 bp):
TAATATTAATT
Found at i:88494923 original size:16 final size:16
Alignment explanation
Indices: 88494902--88494937 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
88494892 AATTAATAAA
88494902 TATTACTTTATTCATC
1 TATTACTTTATTCATC
*
88494918 TATTACTTTATTCGTC
1 TATTACTTTATTCATC
88494934 TATT
1 TATT
88494938 GGTTAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.17, G:0.03, T:0.58
Consensus pattern (16 bp):
TATTACTTTATTCATC
Found at i:88498545 original size:20 final size:20
Alignment explanation
Indices: 88498520--88498565 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
88498510 AGGAACTAAA
* *
88498520 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
88498540 ATGAAAAAATTCTAAAATTTT
1 ATG-AAAAATTCTAAAATTTG
88498561 ATGAA
1 ATGAA
88498566 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:88499971 original size:14 final size:14
Alignment explanation
Indices: 88499951--88500030 Score: 70
Period size: 14 Copynumber: 5.6 Consensus size: 14
88499941 GTTTCAAGTG
* *
88499951 TAGGGTTTAGGGTT
1 TAGGGTTTAAGTTT
* *
88499965 TAAGGTTTAATTTT
1 TAGGGTTTAAGTTT
* *
88499979 TAGTGCTTAAGTTT
1 TAGGGTTTAAGTTT
88499993 TAGGGTTTAGAGTTT
1 TAGGGTTTA-AGTTT
* * *
88500008 TAAGATTTAAGGTT
1 TAGGGTTTAAGTTT
88500022 TAGGGTTTA
1 TAGGGTTTA
88500031 CGGTAAAGTT
Statistics
Matches: 50, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
14 38 0.76
15 12 0.24
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.47
Consensus pattern (14 bp):
TAGGGTTTAAGTTT
Found at i:88500016 original size:22 final size:22
Alignment explanation
Indices: 88499985--88500029 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
88499975 TTTTTAGTGC
* *
88499985 TTAAGTTTTAGGGTTTAGAGTT
1 TTAAGATTTAAGGTTTAGAGTT
*
88500007 TTAAGATTTAAGGTTTAGGGTT
1 TTAAGATTTAAGGTTTAGAGTT
88500029 T
1 T
88500030 ACGGTAAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (22 bp):
TTAAGATTTAAGGTTTAGAGTT
Found at i:88502085 original size:27 final size:26
Alignment explanation
Indices: 88502046--88502121 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
88502036 AAGATTTAAC
* * *
88502046 ATAAATAAAATATAAATCAATTTGAA
1 ATAAATAATATATAAATAAATTTCAA
88502072 ATAAAATAATATATAAAGTAAATTTCAA
1 AT-AAATAATATATAAA-TAAATTTCAA
*
88502100 ATAAATAATATGTAAATAAATT
1 ATAAATAATATATAAATAAATT
88502122 AAGATAAAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.18
27 26 0.59
28 10 0.23
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (26 bp):
ATAAATAATATATAAATAAATTTCAA
Found at i:88502607 original size:17 final size:18
Alignment explanation
Indices: 88502576--88502609 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
88502566 ATAAACTTAA
88502576 AATACCTAATAATAATAT
1 AATACCTAATAATAATAT
*
88502594 AATA-CTAATTATAATA
1 AATACCTAATAATAATA
88502610 AGGACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (18 bp):
AATACCTAATAATAATAT
Found at i:88505606 original size:26 final size:27
Alignment explanation
Indices: 88505566--88505618 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
88505556 TATTTCTAGA
*
88505566 TATTTTAAATGATTTTTAATA-ATTTTT
1 TATTTTAAATAATTTTTAA-ACATTTTT
88505593 TATTTT-AATAATTTTTAAACATTTTT
1 TATTTTAAATAATTTTTAAACATTTTT
88505619 ATATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 1 0.04
26 17 0.71
27 6 0.25
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (27 bp):
TATTTTAAATAATTTTTAAACATTTTT
Found at i:88507335 original size:5 final size:5
Alignment explanation
Indices: 88507325--88507413 Score: 60
Period size: 5 Copynumber: 17.4 Consensus size: 5
88507315 ATAAAAATTC
* *
88507325 ATTAT ATTAT AATTTT TTTAT ATTAT A-TAT ATT-T ATTAT -TTATTT
1 ATTAT ATTAT -ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTA--T
* *
88507370 ATTAT ATCT-T ACTTAT ATTTCT TTTAT ATTAT ATTAT ATTAT AT
1 ATTAT AT-TAT A-TTAT A-TTAT ATTAT ATTAT ATTAT ATTAT AT
88507414 GTTATATTGA
Statistics
Matches: 66, Mismatches: 9, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
4 11 0.17
5 40 0.61
6 12 0.18
7 3 0.05
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (5 bp):
ATTAT
Found at i:88507421 original size:12 final size:10
Alignment explanation
Indices: 88507325--88507413 Score: 60
Period size: 11 Copynumber: 8.7 Consensus size: 10
88507315 ATAAAAATTC
88507325 ATTATATTAT
1 ATTATATTAT
* *
88507335 AATTTTTTTAT
1 -ATTATATTAT
88507346 ATTATA-TAT
1 ATTATATTAT
88507355 ATT-TATTAT
1 ATTATATTAT
88507364 -TTATTTATTAT
1 ATTA--TATTAT
88507375 ATCT-TACTTAT
1 AT-TATA-TTAT
* *
88507386 ATTTCTTTTAT
1 A-TTATATTAT
88507397 ATTATATTAT
1 ATTATATTAT
88507407 ATTATAT
1 ATTATAT
88507414 GTTATATTGA
Statistics
Matches: 62, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
8 4 0.06
9 9 0.15
10 20 0.32
11 25 0.40
12 3 0.05
13 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTATATTAT
Found at i:88510935 original size:30 final size:29
Alignment explanation
Indices: 88510902--88511035 Score: 160
Period size: 30 Copynumber: 4.5 Consensus size: 29
88510892 AAATCTTAGC
88510902 CTTTTCCACCACCAACTCCACTAGCCACA
1 CTTTTCCACCACCAACTCCACTAGCCACA
88510931 CCTTTTCCACCACCAACTCCACTAGCCACA
1 -CTTTTCCACCACCAACTCCACTAGCCACA
* *
88510961 GCTTTTCCACCACCAAATTCACTAGCCACA
1 -CTTTTCCACCACCAACTCCACTAGCCACA
* ** * *
88510991 CTTGCTCCATTACCTACTCCACTAACCACA
1 CTT-TTCCACCACCAACTCCACTAGCCACA
*
88511021 CTTGCTCCACCACCA
1 CTT-TTCCACCACCA
88511036 CTTGTACCTA
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 3 0.03
30 87 0.97
ACGTcount: A:0.27, C:0.46, G:0.04, T:0.22
Consensus pattern (29 bp):
CTTTTCCACCACCAACTCCACTAGCCACA
Found at i:88511734 original size:25 final size:24
Alignment explanation
Indices: 88511684--88511748 Score: 98
Period size: 25 Copynumber: 2.8 Consensus size: 24
88511674 ACATGTTATC
88511684 TTATGTATATA-TTTT-AACTATA
1 TTATGTATATATTTTTAAACTATA
*
88511706 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAA-ACTATA
88511731 TTATGTATATATTTTTAA
1 TTATGTATATATTTTTAA
88511749 TATTATCACG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 10 0.26
23 4 0.11
24 1 0.03
25 23 0.61
ACGTcount: A:0.34, C:0.05, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATGTATATATTTTTAAACTATA
Found at i:88511953 original size:7 final size:8
Alignment explanation
Indices: 88511909--88511958 Score: 68
Period size: 8 Copynumber: 6.5 Consensus size: 8
88511899 TATTATTCTA
*
88511909 ATATTTGG
1 ATATTTTG
88511917 ATATTTTG
1 ATATTTTG
88511925 ATATTTTG
1 ATATTTTG
*
88511933 ATATTTTA
1 ATATTTTG
88511941 ATATTTT-
1 ATATTTTG
88511948 ATATTTT-
1 ATATTTTG
88511955 ATAT
1 ATAT
88511959 ATTTTATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 11 0.28
8 29 0.73
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (8 bp):
ATATTTTG
Found at i:88511960 original size:16 final size:16
Alignment explanation
Indices: 88511917--88511965 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
88511907 TAATATTTGG
*
88511917 ATATTTTGATAT-TTTG
1 ATATTTT-ATATATTTT
88511933 ATATTTTA-ATATTTT
1 ATATTTTATATATTTT
88511948 ATATTTTATATATTTT
1 ATATTTTATATATTTT
88511964 AT
1 AT
88511966 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 2 0.07
15 12 0.40
16 16 0.53
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
ATATTTTATATATTTT
Found at i:88513557 original size:23 final size:24
Alignment explanation
Indices: 88513511--88513562 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
88513501 AATTTGGAAA
* *
88513511 ATTTTTTATGTTAGGATTTGAATT
1 ATTTTTTATATTAGGATATGAATT
* *
88513535 TTTTTTTATATTAGGCTAT-AATT
1 ATTTTTTATATTAGGATATGAATT
88513558 ATTTT
1 ATTTT
88513563 CACACTAGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.25, C:0.02, G:0.12, T:0.62
Consensus pattern (24 bp):
ATTTTTTATATTAGGATATGAATT
Found at i:88514960 original size:3 final size:3
Alignment explanation
Indices: 88514952--88514977 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
88514942 AATAAGTAGG
88514952 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
88514978 GGACTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:88516658 original size:44 final size:44
Alignment explanation
Indices: 88516587--88517054 Score: 268
Period size: 44 Copynumber: 10.7 Consensus size: 44
88516577 ATCTGAAACG
* * * * *
88516587 ATCTACTCTACTGTAACCTTAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTA
* * * * *
88516631 ATCCGTTCCACTGTAATCTCAGGGAGAT-AGCAT--TACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAG-ATCCT-TTA-TTTTA
* * ** *
88516675 ATCTACTCCGCTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTTG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT-TTA-T-TTTA
* * ***
88516721 GTCTGCTCCACTGTAATCTCAGGGAGATAAGA-CC-TGA-TGCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTA
* ** *
88516762 ATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTA
* * *
88516806 ATCTGCTCCACTGTAATCTCAGGGAGATAGGAT--TACTATCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT-TTAT-TTTA
* ** *
88516850 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-CTAAAATCTTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT-TTAT-TTT-A
* * ***
88516896 GTCTGCTCCACTGTAATCTCAGGGAGATAAGA-CC-TGA-TGCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTA
* * **
88516937 ATCTACTCTACTGTAA-CTTCAGAAAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTA
* * * * *
88516981 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT--TACTATCATCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT-TTAT-TTTA
*
88517025 ATCTGCTCCGCTGTAATCTCAGGGAGATAA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAA
88517055 TACTTTGGTT
Statistics
Matches: 323, Mismatches: 77, Indels: 48
0.72 0.17 0.11
Matches are distributed among these distances:
40 2 0.01
41 53 0.16
42 8 0.02
43 14 0.04
44 170 0.53
45 13 0.04
46 63 0.20
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTA
Found at i:88516788 original size:175 final size:175
Alignment explanation
Indices: 88516567--88517054 Score: 836
Period size: 175 Copynumber: 2.8 Consensus size: 175
88516557 GCTCCACTTT
* **
88516567 GGGAGATAAGATCTGAAACGATCTACTCTACTGTAACCTT-AGAGAGATAAGATCCTTTATTTTA
1 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTA
* * * *
88516631 ATCCGTTCCACTGTAATCTCAGGGAGATAGCATTACTAGCTTCAATCTACTCCGCTGTAATCTCA
65 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCA
*
88516696 GGGAGATAAGATCTGAAATTCTTT-GGTCTGCTCCACTGTAATCTCA
130 GGGAGATAAGATCT-AAAATCTTTCGGTCTGCTCCACTGTAATCTCA
*
88516742 GGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
1 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
*
88516807 TCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAG
66 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAG
88516872 GGAGATAAGATCTAAAATCTTTCGGTCTGCTCCACTGTAATCTCA
131 GGAGATAAGATCTAAAATCTTTCGGTCTGCTCCACTGTAATCTCA
*
88516917 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAAAGATAAGATCCTTTATTTTAA
1 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
*
88516982 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCATCAATCTGCTCCGCTGTAATCTCAG
66 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAG
88517047 GGAGATAA
131 GGAGATAA
88517055 TACTTTGGTT
Statistics
Matches: 297, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
174 11 0.04
175 286 0.96
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (175 bp):
GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA
TCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAG
GGAGATAAGATCTAAAATCTTTCGGTCTGCTCCACTGTAATCTCA
Found at i:88517350 original size:125 final size:125
Alignment explanation
Indices: 88517144--88517461 Score: 442
Period size: 125 Copynumber: 2.5 Consensus size: 125
88517134 CGTCATTGTA
* * * * * * * *
88517144 GCTTTAATCTTTTTAACTGCAATATCGGAGAAACAAGATTCGCCAATTTGGCTTTAATCTATTCT
1 GCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCC
* *
88517209 ACTGCATCGCTTGGGGCGTAAGATTCGTTATTGTAGCTTTAATCAAGATTCATCGATGTG
66 ACTGCATCGCTTGGGGCGTAAGATTCGCTATTGTAGCTTTAATCAAGATTCACCGATGTG
* * *
88517269 GCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTTACCGATGTGGTTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCC
*
88517334 ACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTG
66 ACTGCATCGCTTGGGGCGTAAGATTCGCTATTGTAGCTTTAATCAAGATTCACCGATGTG
* * * *
88517394 GCTTTAATCCTTTTAACCGCAATGTCA--GAAAGACAAGATTCACCGTTGTGGCTTTAATCTATT
1 GCTTTAATCTTTTTAACTGCAATGT-AGGGGAAG-CAAGATTCACCGATGTGGCTTTAATCTATT
88517457 CCACT
64 CCACT
88517462 ACACCGCCTG
Statistics
Matches: 170, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
124 4 0.02
125 165 0.97
126 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (125 bp):
GCTTTAATCTTTTTAACTGCAATGTAGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCC
ACTGCATCGCTTGGGGCGTAAGATTCGCTATTGTAGCTTTAATCAAGATTCACCGATGTG
Found at i:88517480 original size:125 final size:125
Alignment explanation
Indices: 88517144--88517502 Score: 440
Period size: 125 Copynumber: 2.9 Consensus size: 125
88517134 CGTCATTGTA
* * * *
88517144 GCTTTAATCTTTTTAACTGCAATATCGGAGAA-ACAAGATTCGCCAATT-TGGCTTTAATCTATT
1 GCTTTAATCTTTTTAACTGCAATGTCAGA-AAGACAAGATTCACC-GTTGTGGCTTTAATCTATT
* * * *
88517207 CTACTGCATCGCTTGGGGCGTAAGATTCGTTATTGTAGCTTTAATCAAGATTCATCGATGTG
64 CCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTG
* * * * *
88517269 GCTTTAATCTTTTTAACTGCAATGT-AGGGGAAG-CAAGATTTACCGATGTGGTTTTAATCTGTT
1 GCTTTAATCTTTTTAACTGCAATGTCA--GAAAGACAAGATTCACCGTTGTGGCTTTAATCTATT
88517332 CCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTG
64 CCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTG
* *
88517394 GCTTTAATCCTTTTAACCGCAATGTCAGAAAGACAAGATTCACCGTTGTGGCTTTAATCTATTCC
1 GCTTTAATCTTTTTAACTGCAATGTCAGAAAGACAAGATTCACCGTTGTGGCTTTAATCTATTCC
* * * * * * *
88517459 ACTACACCGCCTGAGAG-GTAAGATTTGCTGATGTAGCTTCAATC
66 ACTGCATCGCTTG-GGGCGTAAGATTCGCTGTTGTAGCTTTAATC
88517503 TTCTTAATTG
Statistics
Matches: 200, Mismatches: 27, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
124 5 0.03
125 191 0.95
126 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35
Consensus pattern (125 bp):
GCTTTAATCTTTTTAACTGCAATGTCAGAAAGACAAGATTCACCGTTGTGGCTTTAATCTATTCC
ACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATGTG
Found at i:88517640 original size:98 final size:99
Alignment explanation
Indices: 88517437--88517710 Score: 289
Period size: 98 Copynumber: 2.8 Consensus size: 99
88517427 CAAGATTCAC
* * * * ** ** * *
88517437 CGTTGTGGCTTTAATCTATTCCACTACACCGCCTGAGAGGTAAGATTTGCTGATGTAGCTTCAAT
1 CGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTG-GAAATAAGATTCACCGATGTAGCCTCAAT
*
88517502 CTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGT
65 CTTCTGAATTGCAATGTCAGGGAAGTAAGATCCGT
* * *
88517537 TGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGAAATAAGATTCACCGTTGTGGCCTCAATC
1 CGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGAAATAAGATTCACCGATGTAGCCTCAATC
* * *
88517602 TT-TGGATTGCAATGTCAGGGAAGTGAGATCTGT
66 TTCTGAATTGCAATGTCAGGGAAGTAAGATCCGT
* * * * * * * *
88517635 CGTTGTAGCTTCAATCTGTTCTACTGCACCGCTTGGAATGTAAGATCCGCTGTTGTAGCTTCAAT
1 CGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGAA-ATAAGATTCACCGATGTAGCCTCAAT
*
88517700 CTTTTGAATTG
65 CTTCTGAATTG
88517711 AAAGCTATGG
Statistics
Matches: 145, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
98 62 0.43
99 47 0.32
100 36 0.25
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (99 bp):
CGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGAAATAAGATTCACCGATGTAGCCTCAATC
TTCTGAATTGCAATGTCAGGGAAGTAAGATCCGT
Found at i:88517832 original size:44 final size:45
Alignment explanation
Indices: 88517718--88517849 Score: 135
Period size: 45 Copynumber: 3.0 Consensus size: 45
88517708 TTGAAAGCTA
* * * *
88517718 TGGTTTCTTCGATCTGCTTCGTTGTTAGTACAAGAAGGCAAGATC
1 TGGTATCTTCGATCTGCTTCGCTGTCAGTACAAGAAGGCAAGAGC
* * * *
88517763 TGCTATCTTC-ATTCTACTCCGCTGTCAGTACAGGAAGGCAAG-GC
1 TGGTATCTTCGA-TCTGCTTCGCTGTCAGTACAAGAAGGCAAGAGC
* *
88517807 TGGTGTCTTCGATCTGCTTCGCTGTCAAG-GCAAGAAGGCAAGA
1 TGGTATCTTCGATCTGCTTCGCTGTC-AGTACAAGAAGGCAAGA
88517850 TCTACTGTCT
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
44 33 0.48
45 36 0.52
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.30
Consensus pattern (45 bp):
TGGTATCTTCGATCTGCTTCGCTGTCAGTACAAGAAGGCAAGAGC
Done.