Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 27 of 332
Found at i:7881822 original size:47 final size:46
Alignment explanation
Indices: 7881763--7881923 Score: 139
Period size: 47 Copynumber: 3.5 Consensus size: 46
7881753 GATGCGAACG
*
7881763 TCCGAACTCGTTGAGTTGAGTATGAGTTTGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGT-TGAGTTAGTGAAATGTAACTAGGCA
* * * * * *
7881810 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATGCGA-ACA
1 TCCGAACTCGTTGAGTTGAGT-TGAGTT-AGTGAAATGTA-ACTAGGCA
* * * * *
7881856 TTCAAACTCGTTAAGTTCAGTTCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTT-GAGTTAGTGAAATGTAACTAGGCA
*
7881903 TCCGAACTTGTTGAGTTGAGT
1 TCCGAACTCGTTGAGTTGAGT
7881924 CCGAGTTCAC
Statistics
Matches: 84, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
45 2 0.02
46 30 0.36
47 51 0.61
48 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTTGAGTTAGTGAAATGTAACTAGGCA
Found at i:7881978 original size:93 final size:93
Alignment explanation
Indices: 7881711--7881966 Score: 386
Period size: 93 Copynumber: 2.8 Consensus size: 93
7881701 TTTGGATATT
* *
7881711 TAGGCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTG
* *
7881776 AGTTGAGTATGAGTTTGTGAAATGTAAC
66 AGTTGAGTACGAGTTCGTGAAATGTAAC
* * * *
7881804 TAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACATTCAAACTCGTTA
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTG
* *
7881869 AGTTCAGTTCGAGTTCGTGAAATGTAAC
66 AGTTGAGTACGAGTTCGTGAAATGTAAC
* * * *
7881897 TAGGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTG
7881962 AGTTG
66 AGTTG
7881967 GGTCCAAGTT
Statistics
Matches: 144, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 144 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (93 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTG
AGTTGAGTACGAGTTCGTGAAATGTAAC
Found at i:7890654 original size:39 final size:39
Alignment explanation
Indices: 7890609--7890779 Score: 159
Period size: 39 Copynumber: 4.4 Consensus size: 39
7890599 GACATGAGGT
7890609 CCGCAGGCTATATGCTGGAAAAATATTCGGGTTAAAGAC
1 CCGCAGGCTATATGCTGGAAAAATATTCGGGTTAAAGAC
** * *
7890648 CCGCAGGCTATATGCTGGAAAAATATTC-GGACATGAGAT
1 CCGCAGGCTATATGCTGGAAAAATATTCGGGTTA-AAGAC
** * * * * * **
7890687 CCGCACACTATATGCTAGAAATATATCCGGACTT-GAGGT
1 CCGCAGGCTATATGCTGGAAAAATATTCGG-GTTAAAGAC
* *
7890726 CCACAGGCTATGTGCTGGAAAAATATTCGGGTTAAAGAC
1 CCGCAGGCTATATGCTGGAAAAATATTCGGGTTAAAGAC
*
7890765 CCGCAGGAT-TATGCT
1 CCGCAGGCTATATGCT
7890780 AGTAATGTAT
Statistics
Matches: 101, Mismatches: 27, Indels: 9
0.74 0.20 0.07
Matches are distributed among these distances:
38 10 0.10
39 90 0.89
40 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGCAGGCTATATGCTGGAAAAATATTCGGGTTAAAGAC
Found at i:7890690 original size:78 final size:78
Alignment explanation
Indices: 7890586--7890755 Score: 198
Period size: 78 Copynumber: 2.2 Consensus size: 78
7890576 GTATGAGATT
* * ** * * *
7890586 GAAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATTCGG-GTTAAAGACCC
1 GAAAA-ATATTCGGACATGAGATCCGCACACTATATGCTAGAAAAATATCCGGACTT-AAGACCC
*
7890650 GCAGGCTATATGCTG
64 ACAGGCTATATGCTG
* * **
7890665 GAAAAATATTCGGACATGAGATCCGCACACTATATGCTAGAAATATATCCGGACTTGAGGTCCAC
1 GAAAAATATTCGGACATGAGATCCGCACACTATATGCTAGAAAAATATCCGGACTTAAGACCCAC
*
7890730 AGGCTATGTGCTG
66 AGGCTATATGCTG
7890743 GAAAAATATTCGG
1 GAAAAATATTCGG
7890756 GTTAAAGACC
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 70 0.91
79 7 0.09
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
GAAAAATATTCGGACATGAGATCCGCACACTATATGCTAGAAAAATATCCGGACTTAAGACCCAC
AGGCTATATGCTG
Found at i:7895627 original size:39 final size:39
Alignment explanation
Indices: 7895582--7895714 Score: 189
Period size: 39 Copynumber: 3.4 Consensus size: 39
7895572 AGACATGAGG
7895582 TCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGA
1 TCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGA
* * *
7895621 TCCGCAGGCTATATGCTGGAAAAATATCCGGACTT-GAGG
1 TCCGCAGGCTATATGCTGGAAAAATATTCGG-CTTAAAGA
* *
7895660 TCCGCAGGCTATGTGCTGGAAAAATATTCGGGTTAAAGA
1 TCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGA
*
7895699 CCCGCAGGCT-TATGCT
1 TCCGCAGGCTATATGCT
7895715 AGTAATGTAT
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 7 0.09
39 72 0.88
40 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGA
Found at i:7895665 original size:78 final size:78
Alignment explanation
Indices: 7895560--7895714 Score: 249
Period size: 78 Copynumber: 2.0 Consensus size: 78
7895550 GTATGAGATT
*
7895560 GAAAATATATCCAGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGATCCG
1 GAAAATATATCCAGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGACCCG
7895625 CAGGCTATATGCTG
66 CAGGCT-TATGCTG
* * * *
7895639 GAAAA-ATATCCGGACTTGAGGTCCGCAGGCTATGTGCTGGAAAAATATTCGGGTTAAAGACCCG
1 GAAAATATATCCAGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGACCCG
7895703 CAGGCTTATGCT
66 CAGGCTTATGCT
7895715 AGTAATGTAT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
77 6 0.08
78 60 0.85
79 5 0.07
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (78 bp):
GAAAATATATCCAGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATTCGGCTTAAAGACCCG
CAGGCTTATGCTG
Found at i:7896897 original size:31 final size:31
Alignment explanation
Indices: 7896859--7896964 Score: 167
Period size: 31 Copynumber: 3.4 Consensus size: 31
7896849 ACGGTTACTA
*
7896859 GGCCGAAGCCTTTTCATAAATCATATCTCTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
7896890 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
* * *
7896921 GGCTGAAGCCTTTTCATAAGTCATATCACTT
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
7896952 GACCGAAGCCTTT
1 GGCCGAAGCCTTT
7896965 ACTGTAAACA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:7897213 original size:25 final size:25
Alignment explanation
Indices: 7897185--7897254 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
7897175 CTCTTTTAAT
7897185 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
7897210 AACTGGGGAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
7897235 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
7897255 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:7898212 original size:27 final size:27
Alignment explanation
Indices: 7898182--7898267 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
7898172 GTAAATCTAC
7898182 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
* *
7898209 AAACCAATGGTATTTCTATGATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
7898235 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
7898265 AAA
1 AAA
7898268 TTAGGAGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.02
27 21 0.43
28 7 0.14
29 19 0.39
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:7898286 original size:27 final size:26
Alignment explanation
Indices: 7898269--7898395 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 26
7898259 TTTTGTAAAT
*
7898269 TAGGAGTATTTTGGTAATTTTACAAAT
1 TAGG-GTATTTTGGTAATTTTACAAAC
*
7898296 TGAGGGTATTTTGGTAATTTGACAAAC
1 T-AGGGTATTTTGGTAATTTTACAAAC
* * *
7898323 CAGTGGTATTTCGGTAATTTCACAAAC
1 TAG-GGTATTTTGGTAATTTTACAAAC
*
7898350 TAGGGGTATTTTGGTAATTTTACAGAC
1 TA-GGGTATTTTGGTAATTTTACAAAC
7898377 TAGGGGTATTTTGGTAATT
1 TA-GGGTATTTTGGTAATT
7898396 CTATCCTACA
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.02
27 82 0.93
28 4 0.05
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (26 bp):
TAGGGTATTTTGGTAATTTTACAAAC
Found at i:7898412 original size:81 final size:81
Alignment explanation
Indices: 7898269--7898428 Score: 209
Period size: 81 Copynumber: 2.0 Consensus size: 81
7898259 TTTTGTAAAT
* *
7898269 TAGGAGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTGACAAACCAGTGGTATTT
1 TAGGAGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTGACAAACCAGGGGTATTT
*
7898334 CGGTAATTTCACAAAC
66 CAGTAATTTCACAAAC
* * **
7898350 TAGGGGTATTTTGGTAATTTTACAGACTAG-GGGTATTTTGGTAATTCT-ATCCTA-CAGGGGTA
1 TAGGAGTATTTTGGTAATTTTACA-AATAGAGGGTATTTTGGTAATT-TGA-CAAACCAGGGGTA
7898412 TTTCAGTAATTTCACAA
63 TTTCAGTAATTTCACAA
7898429 TTGAGGGTAA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
81 63 0.91
82 6 0.09
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.39
Consensus pattern (81 bp):
TAGGAGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTGACAAACCAGGGGTATTT
CAGTAATTTCACAAAC
Found at i:7898460 original size:27 final size:27
Alignment explanation
Indices: 7898431--7898612 Score: 240
Period size: 27 Copynumber: 6.7 Consensus size: 27
7898421 TTTCACAATT
* *
7898431 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
7898457 TGAGGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAATGGTAATTCTGTAAATC
* * *
7898485 GAAGGTAAAACGGTAATTCAGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
7898512 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
7898539 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
7898566 GAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
7898593 GTGGGTAAAATGGTAATTCT
1 GAGGGTAAAATGGTAATTCT
7898613 ACAAATCAAG
Statistics
Matches: 136, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 135 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:7898543 original size:81 final size:81
Alignment explanation
Indices: 7898431--7898624 Score: 284
Period size: 81 Copynumber: 2.4 Consensus size: 81
7898421 TTTCACAATT
* * *
7898431 GAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAAGGTAAAA
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGAAGGTAAAA
7898495 CGGTAATTC-AGTAAATC
65 CGGTAATTCTA-TAAATC
* *
7898512 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAAGGTAAAAC
7898577 GGTAATTCTATAAATC
66 GGTAATTCTATAAATC
* * *
7898593 GTGGGTAAAATGGTAATTCTACAAATCAAGGG
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGG
7898625 AATTTCAGTA
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
81 101 0.98
82 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAAGGTAAAAC
GGTAATTCTATAAATC
Found at i:7912705 original size:55 final size:56
Alignment explanation
Indices: 7912575--7912709 Score: 227
Period size: 56 Copynumber: 2.4 Consensus size: 56
7912565 TCCCAGACAA
* *
7912575 GGTCTTACTCGCACACATATGTCAGAGTCACATATCAATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACGTATTAAACGT
*
7912631 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAAC-TATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACGTATTAAACGT
*
7912686 GGTCTTACTCGCCCACATATATCG
1 GGTCTTACTCGCACACATATATCG
7912710 ATGCCATGGT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
55 33 0.44
56 42 0.56
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACATATCAATGCCAACGTATTAAACGT
Found at i:7913412 original size:34 final size:34
Alignment explanation
Indices: 7913360--7913440 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
7913350 TTAGCGCCTC
**
7913360 TTTCAGTAGTAGTAGCAGTCTGGGCCTGAGCCCA
1 TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
* *
7913394 TTTCAGTAACAGTGGCAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
7913428 TTTCAGT-ACAGTA
1 TTTCAGTAACAGTA
7913441 TGCAAATAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 5 0.12
34 37 0.88
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.28
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
Found at i:7913989 original size:16 final size:16
Alignment explanation
Indices: 7913968--7914007 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
7913958 TACCCGTGTA
7913968 GGGCCCACGAGACCCT
1 GGGCCCACGAGACCCT
7913984 GGGCCCACGAGACCCT
1 GGGCCCACGAGACCCT
7914000 GGGCCCAC
1 GGGCCCAC
7914008 ACGGCCTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.17, C:0.45, G:0.33, T:0.05
Consensus pattern (16 bp):
GGGCCCACGAGACCCT
Found at i:7915694 original size:46 final size:46
Alignment explanation
Indices: 7915627--7915797 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
7915617 GTAACCCCCC
*
7915627 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
7915673 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
7915721 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
7915766 TAAGTGAACTCGGACTCAACTCAACGA-TTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
7915798 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 7 0.07
46 54 0.50
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:7915739 original size:93 final size:92
Alignment explanation
Indices: 7915632--7915801 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
7915622 CCCCCTAAGT
* *
7915632 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7915697 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGA-TTCGGATGCCTAGTTACATCTCAC
*
7915725 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7915790 CGATTCGGATGC
66 CGATTCGGATGC
7915802 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 9 0.12
93 65 0.88
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGATTCGGATGCCTAGTTACATCTCAC
Found at i:7916250 original size:30 final size:30
Alignment explanation
Indices: 7916216--7916275 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
7916206 ATTTAATACG
7916216 AACTTTGGAAAAATTACACTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * * *
7916246 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
7916276 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:7923684 original size:30 final size:30
Alignment explanation
Indices: 7923650--7923710 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
7923640 CATTTAATAC
7923650 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
7923680 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
7923710 A
1 A
7923711 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:7927437 original size:27 final size:27
Alignment explanation
Indices: 7927407--7927584 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
7927397 ATATTGAGTC
* * *
7927407 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
7927434 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
7927461 CGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
7927489 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
7927516 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
7927543 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
7927570 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7927585 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:7927546 original size:82 final size:81
Alignment explanation
Indices: 7927428--7927583 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7927418 TGCTATATAA
* * *
7927428 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7927493 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7927510 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7927574 CACTTAGTGC
65 CACTTAGTGC
7927584 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7931246 original size:50 final size:50
Alignment explanation
Indices: 7931146--7931458 Score: 213
Period size: 48 Copynumber: 6.5 Consensus size: 50
7931136 AAGCTGACAC
* * *
7931146 CATGTCCCAAACAGGTTTTACACTAGCT-T-GTCTATCACAAGGCTAATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTATCACAAGGCTAATG
* *
7931194 CATGTCCCAAACATGTCATACACTAGTTCTCATCTATCACAAGGCTAATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTATCACAAGGCTAATG
* ** * * * *
7931244 CATATCCCTGACATGTCTTACACTGGCT-TCA-ATATCTCAAGGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTATCACAAGGCTAATG
* * * ** *
7931292 CATGTTCCAAACATGTCTTACACTAGCTCTCGTC--T--CAATGCCGATA
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTATCACAAGGCTAATG
*** * ** * * * * *
7931338 CATGTCCTTGACATGTCTTACAGTAGCT-T-AAGTATCTCAAAGTTGATT
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTATCACAAGGCTAATG
* * * **
7931386 CATGTCCCAAACATGTCTTACACTAGC-C-C-TC-GTCGCAATGCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTATCACAAGGCTAATG
*
7931432 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
7931459 ACACATATCG
Statistics
Matches: 206, Mismatches: 49, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
45 1 0.00
46 67 0.33
48 92 0.45
49 6 0.03
50 40 0.19
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (50 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCATCTATCACAAGGCTAATG
Found at i:7931303 original size:98 final size:94
Alignment explanation
Indices: 7931163--7931458 Score: 288
Period size: 94 Copynumber: 3.1 Consensus size: 94
7931153 CAAACAGGTT
*** * * *
7931163 TTACACTAGCTTGTCTATCACAAGGCTAATGCATGTCCCAAACATGTCATACACTAGTTCTCATC
1 TTACACTAGCTTAAGTATCTCAAGGCTGATGCATGTCCCAAACATGTCTTACACTAG--CTC-TC
* *
7931228 TATCACAAGGCTAATGCATATCCCTGACATGTC
63 -ATCACAAGGCCAATACATATCCCTGACATGTC
* * *
7931261 TTACACTGGCTTCAA-TATCTCAAGGCTGATGCATGTTCCAAACATGTCTTACACTAGCTCTCGT
1 TTACACTAGCTT-AAGTATCTCAAGGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCAT
* * * * *
7931325 CTCAATGCCGATACATGTCCTTGACATGTC
65 CACAAGGCCAATACATATCCCTGACATGTC
* * * * * *
7931355 TTACAGTAGCTTAAGTATCTCAAAGTTGATTCATGTCCCAAACATGTCTTACACTAGCCCTCGTC
1 TTACACTAGCTTAAGTATCTCAAGGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATC
* * * * * *
7931420 GCAATGCCGATGCATGTCCCAGACATGTC
66 ACAAGGCCAATACATATCCCTGACATGTC
7931449 TTACACTAGC
1 TTACACTAGC
7931459 ACACATATCG
Statistics
Matches: 169, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
93 2 0.01
94 113 0.67
95 2 0.01
96 3 0.02
98 49 0.29
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (94 bp):
TTACACTAGCTTAAGTATCTCAAGGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATC
ACAAGGCCAATACATATCCCTGACATGTC
Found at i:7931352 original size:46 final size:46
Alignment explanation
Indices: 7931278--7931458 Score: 175
Period size: 46 Copynumber: 3.9 Consensus size: 46
7931268 GGCTTCAATA
* * * * *
7931278 TCTCAAGGCTGATGCATGTTCCAAACATGTCTTACACTAGCTCTCG
1 TCTCAATGCCGATACATGTCCCAGACATGTCTTACACTAGCTCTCG
** * *
7931324 TCTCAATGCCGATACATGTCCTTGACATGTCTTACAGTAGCT-TAAG
1 TCTCAATGCCGATACATGTCCCAGACATGTCTTACACTAGCTCT-CG
* ** * * *
7931370 TATCTCAAAGTTGATTCATGTCCCAAACATGTCTTACACTAGCCCTCG
1 --TCTCAATGCCGATACATGTCCCAGACATGTCTTACACTAGCTCTCG
* *
7931418 TCGCAATGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 TCTCAATGCCGATACATGTCCCAGACATGTCTTACACTAGC
7931459 ACACATATCG
Statistics
Matches: 106, Mismatches: 25, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
45 1 0.01
46 70 0.66
48 34 0.32
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
TCTCAATGCCGATACATGTCCCAGACATGTCTTACACTAGCTCTCG
Found at i:7931390 original size:94 final size:94
Alignment explanation
Indices: 7931248--7931458 Score: 307
Period size: 94 Copynumber: 2.2 Consensus size: 94
7931238 CTAATGCATA
* * *
7931248 TCCCTGACATGTCTTACACTGGCTTCAATATCTCAAGGCTGATGCATGTTCCAAACATGTCTTAC
1 TCCCTGACATGTCTTACACTAGCTTCAATATCTCAAAGCTGATGCATGTCCCAAACATGTCTTAC
* *
7931313 ACTAGCTCTCGTCTCAATGCCGATACATG
66 ACTAGCCCTCGTCGCAATGCCGATACATG
* * * *
7931342 TCCTTGACATGTCTTACAGTAGCTT-AAGTATCTCAAAGTTGATTCATGTCCCAAACATGTCTTA
1 TCCCTGACATGTCTTACACTAGCTTCAA-TATCTCAAAGCTGATGCATGTCCCAAACATGTCTTA
*
7931406 CACTAGCCCTCGTCGCAATGCCGATGCATG
65 CACTAGCCCTCGTCGCAATGCCGATACATG
*
7931436 TCCCAGACATGTCTTACACTAGC
1 TCCCTGACATGTCTTACACTAGC
7931459 ACACATATCG
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 2 0.02
94 101 0.98
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (94 bp):
TCCCTGACATGTCTTACACTAGCTTCAATATCTCAAAGCTGATGCATGTCCCAAACATGTCTTAC
ACTAGCCCTCGTCGCAATGCCGATACATG
Found at i:7935878 original size:46 final size:46
Alignment explanation
Indices: 7935819--7936177 Score: 215
Period size: 46 Copynumber: 7.7 Consensus size: 46
7935809 TTGGGCATCC
7935819 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * ** * * *
7935865 GAACTTGTGGAGTTGAGTCCGCGTTCGAGAGATAT-AACTAG-GCA--TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC---ACTTATGGA-T-GCGAATGTCT
*
7935912 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * *
7935958 GAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCT
* * * * *
7936005 GAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
7936051 GAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCT
* * * * * *
7936098 GAGCACGTTGAGTTGAGTCCGAGTTCACTTATCGATACGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * *
7936144 AAATTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7936178 GCGGGTTACA
Statistics
Matches: 238, Mismatches: 44, Indels: 62
0.69 0.13 0.18
Matches are distributed among these distances:
42 6 0.03
43 13 0.05
44 7 0.03
45 3 0.01
46 106 0.45
47 76 0.32
48 3 0.01
49 7 0.03
50 12 0.05
51 5 0.02
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:7935931 original size:47 final size:46
Alignment explanation
Indices: 7935874--7936124 Score: 192
Period size: 47 Copynumber: 5.4 Consensus size: 46
7935864 TGAACTTGTG
*
7935874 GAGTTGAGTCCGCGTTCGAGAGATATAACTAGGCATCCGAGCTCGTT
1 GAGTTGAGTCCGAGTTC-AGAGATATAACTAGGCATCCGAGCTCGTT
** * * * *
7935921 GAGTTGAGTCCGAGTTC--ACTTATGGA-T-GCGAATGTCTGAACTCGTT
1 GAGTTGAGTCCGAGTTCAGAGATAT-AACTAG-GCA--TCCGAGCTCGTT
* *
7935967 GAGTTGAGTCCGAGTTTGAGAGATGTAACTAGGCATCCGAGCTCGTT
1 GAGTTGAGTCCGAG-TTCAGAGATATAACTAGGCATCCGAGCTCGTT
* *** * * * *
7936014 GAGTTGAGTTCGAGTTCACTTATGGAT-GCGAACGC--CCGAACTCGTT
1 GAGTTGAGTCCGAGTTCAGAGAT--ATAAC-TAGGCATCCGAGCTCGTT
* *
7936060 GAGTTGAGTCCGAGTTCAAGAGATGTAACTAGGCATCCGAGCACGTT
1 GAGTTGAGTCCGAGTTC-AGAGATATAACTAGGCATCCGAGCTCGTT
7936107 GAGTTGAGTCCGAGTTCA
1 GAGTTGAGTCCGAGTTCA
7936125 CTTATCGATA
Statistics
Matches: 153, Mismatches: 35, Indels: 33
0.69 0.16 0.15
Matches are distributed among these distances:
43 1 0.01
44 7 0.05
45 5 0.03
46 57 0.37
47 71 0.46
48 5 0.03
49 6 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (46 bp):
GAGTTGAGTCCGAGTTCAGAGATATAACTAGGCATCCGAGCTCGTT
Found at i:7935971 original size:93 final size:93
Alignment explanation
Indices: 7935812--7936169 Score: 545
Period size: 93 Copynumber: 3.8 Consensus size: 93
7935802 AGGATATTTG
* * * * *
7935812 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTTGTGGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
* *
7935877 TTGAGTCCGCGTTCGAGAGATATAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
7935905 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
7935970 TTGAGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
7935998 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
7936063 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
7936091 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATCGATACGAATGCCCAAATTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
7936156 TTGAGTTCGAGTTC
66 TTGAGTCCGAGTTC
7936170 ACTTATGGGC
Statistics
Matches: 245, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 245 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:7941425 original size:47 final size:47
Alignment explanation
Indices: 7941359--7941481 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
7941349 GATGCGAATG
* **
7941359 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTATGTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
*
7941406 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGTA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
7941453 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
7941482 ACTTATGGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:7954901 original size:37 final size:37
Alignment explanation
Indices: 7954860--7954932 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
7954850 TTAATGAATG
* *
7954860 ATTAATAGATAATTTAAGTGAATGTGATACTGAGTTC
1 ATTAAGAGATAATTGAAGTGAATGTGATACTGAGTTC
*
7954897 ATTAAGAGATAATTGAAGTGAATGTGATATTGAGTT
1 ATTAAGAGATAATTGAAGTGAATGTGATACTGAGTT
7954933 ATGAAATGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.37
Consensus pattern (37 bp):
ATTAAGAGATAATTGAAGTGAATGTGATACTGAGTTC
Found at i:7955034 original size:35 final size:35
Alignment explanation
Indices: 7954976--7955081 Score: 117
Period size: 34 Copynumber: 3.1 Consensus size: 35
7954966 AATTAATATT
* * *
7954976 GTCGATTCATTTGACTAGCGCTGGGCGCAAATTTC
1 GTCGATTTATTTGACTAGTGCTGGGCACAAATTTC
*
7955011 GTC-AGTTTATTTGACTAGTGCTGGGCACACA-TTC
1 GTCGA-TTTATTTGACTAGTGCTGGGCACAAATTTC
* ** *
7955045 ATCGATTTATCCGACTAGTGCTGGGCACAAATATC
1 GTCGATTTATTTGACTAGTGCTGGGCACAAATTTC
7955080 GT
1 GT
7955082 TGGTCTATCC
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
34 29 0.50
35 29 0.50
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.32
Consensus pattern (35 bp):
GTCGATTTATTTGACTAGTGCTGGGCACAAATTTC
Found at i:7957663 original size:13 final size:14
Alignment explanation
Indices: 7957647--7957684 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
7957637 GTTAATTTAG
7957647 TAAACTA-ATAATA
1 TAAACTATATAATA
7957660 TAAACTATTATAATA
1 TAAACTA-TATAATA
*
7957675 TAAAATATAT
1 TAAACTATAT
7957685 CATAAAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 7 0.32
14 3 0.14
15 12 0.55
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (14 bp):
TAAACTATATAATA
Found at i:7968087 original size:24 final size:24
Alignment explanation
Indices: 7968043--7968088 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7968033 AAAAGTAATT
* *
7968043 TAAAAAGATAAATAAAGATAAAAG
1 TAAAAAAATAAATAAAAATAAAAG
7968067 TAAAAAAAT-AATAAATAATAAA
1 TAAAAAAATAAATAAA-AATAAA
7968089 TAAAATTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.20
Consensus pattern (24 bp):
TAAAAAAATAAATAAAAATAAAAG
Found at i:7971019 original size:164 final size:164
Alignment explanation
Indices: 7970747--7971072 Score: 562
Period size: 164 Copynumber: 2.0 Consensus size: 164
7970737 ACGTTGTGGC
* *
7970747 GGCACTTTGTCACTTTCTTGTATAGGCGTGAATTTTCATATGCATTGGTTCGCCATTCATCTAAC
1 GGCACTTTGTCACTTCCTTGTATAGGCGTGAATTTTCATATGCATTGGTTCACCATTCATCTAAC
* * *
7970812 TCATTTAACTGCATCAACCTGTTTTCACCTGCAAGTTTGAGATCAAGGTTTAGAGACTTTATAGC
66 TCATTTAACTGCATCAACCTGTTTTCACCTACAAGTCTGAGATCAAGGTTTAGAAACTTTATAGC
7970877 CCAGAATGCCTTATGTTCTAGCTCAAATGGTATA
131 CCAGAATGCCTTATGTTCTAGCTCAAATGGTATA
* * *
7970911 GGCACTTTGTCGCTTCCTTGTATAGGCGTGAATTTTCATATGCATTGGTTTACTATTCATCTAAC
1 GGCACTTTGTCACTTCCTTGTATAGGCGTGAATTTTCATATGCATTGGTTCACCATTCATCTAAC
* *
7970976 TCATTTAATTGCATCAACCTGTTTTCACCTATAAGTCTGAGATCAAGGTTTAGAAACTTTATAGC
66 TCATTTAACTGCATCAACCTGTTTTCACCTACAAGTCTGAGATCAAGGTTTAGAAACTTTATAGC
7971041 CCAGAATGCCTTATGTTCTAGCTCAAATGGTA
131 CCAGAATGCCTTATGTTCTAGCTCAAATGGTA
7971073 GATGACAACT
Statistics
Matches: 152, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
164 152 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (164 bp):
GGCACTTTGTCACTTCCTTGTATAGGCGTGAATTTTCATATGCATTGGTTCACCATTCATCTAAC
TCATTTAACTGCATCAACCTGTTTTCACCTACAAGTCTGAGATCAAGGTTTAGAAACTTTATAGC
CCAGAATGCCTTATGTTCTAGCTCAAATGGTATA
Found at i:7972537 original size:93 final size:93
Alignment explanation
Indices: 7972424--7972595 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
7972414 CGCCCATAAG
* *
7972424 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
7972489 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
7972517 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
7972582 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
7972596 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:7972592 original size:46 final size:46
Alignment explanation
Indices: 7972417--7972592 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
7972407 TGTAACCCGC
* * *
7972417 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
7972463 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
7972513 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
7972556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
7972593 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7980091 original size:93 final size:93
Alignment explanation
Indices: 7979978--7980149 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7979968 CGCCCATAAG
* *
7979978 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7980043 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
7980071 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7980136 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
7980150 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:7980146 original size:46 final size:46
Alignment explanation
Indices: 7979971--7980146 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
7979961 TGTAACCCGC
* * *
7979971 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
7980017 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
7980067 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
7980110 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
7980147 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7990548 original size:27 final size:27
Alignment explanation
Indices: 7990518--7990695 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
7990508 ATATTGAGTC
* * * *
7990518 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
7990545 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7990572 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7990600 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7990627 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7990654 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7990681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7990696 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7990657 original size:82 final size:81
Alignment explanation
Indices: 7990539--7990694 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
7990529 TGCTATATAA
* *
7990539 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7990604 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7990621 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7990685 CACTTAGTGC
65 CACTTAGTGC
7990695 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7998573 original size:27 final size:27
Alignment explanation
Indices: 7998516--7998694 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
7998506 ATATTGAGTC
* * * *
7998516 CGCACACTCAGTGCTATAATAATCAACT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
7998544 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
7998571 CGCACAATTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7998599 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7998626 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7998653 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7998680 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7998695 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
27 90 0.70
28 38 0.30
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7998600 original size:55 final size:55
Alignment explanation
Indices: 7998516--7998694 Score: 209
Period size: 55 Copynumber: 3.3 Consensus size: 55
7998506 ATATTGAGTC
* * * * * *
7998516 CGCACACTCAGTGCTATAATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
7998571 CGCACAATTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATAGTC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
7998626 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
7998680 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7998695 GTACAATTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 45 0.44
55 58 0.56
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:7998637 original size:82 final size:81
Alignment explanation
Indices: 7998538--7998693 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
7998528 GCTATAATAA
* *
7998538 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACAATTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACAATTAGTGCAACATAGTCAAA-TCGC
7998602 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
7998620 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACAATTAGTGCAACATAGTCAAATCGCAC
7998685 ACTTAGTGC
66 ACTTAGTGC
7998694 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACAATTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8004675 original size:30 final size:30
Alignment explanation
Indices: 8004617--8004676 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
8004607 TTCCCGAACC
*
8004617 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATACAAAAGTT
* *
8004647 TAGGGGCAAAAGTGTAATTTTACCAAAGTT
1 TAGGGGCAAAAGTGTAATTATACAAAAGTT
8004677 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATACAAAAGTT
Found at i:8005153 original size:46 final size:46
Alignment explanation
Indices: 8005097--8005266 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
8005087 TGGTTGAGCA
8005097 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
8005143 TCCGAACTCGTTAAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* * *
8005188 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
8005236 -CCTGAGCTCGTTGATTTGAGTCAGAGTTCAC
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCAC
8005267 TTAGGGGCGG
Statistics
Matches: 99, Mismatches: 13, Indels: 24
0.73 0.10 0.18
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 3 0.03
46 51 0.52
47 26 0.26
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:8005255 original size:93 final size:93
Alignment explanation
Indices: 8005094--8005264 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
8005084 GGATGGTTGA
*
8005094 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTAAGT
*
8005159 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCAGAGTTCGTGAGATGTAACTAG
* * * * *
8005187 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTAAG
8005251 TTGAGTCAGAGTTC
65 TTGAGTCAGAGTTC
8005265 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTAAGT
TGAGTCAGAGTTCGTGAGATGTAACTAG
Found at i:8007258 original size:40 final size:39
Alignment explanation
Indices: 8007175--8007396 Score: 202
Period size: 40 Copynumber: 5.6 Consensus size: 39
8007165 TTGAATGCTG
* * * *
8007175 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
8007214 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAA-A
* *
8007254 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
8007294 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TCATTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGAT-ACTAAA
* *
8007334 TCCGGGTTAAGTCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* * *
8007372 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGTTAAGTCCGAAGGCATTTG
8007397 AACGAGGAGC
Statistics
Matches: 153, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
38 30 0.20
39 25 0.16
40 86 0.56
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:8015828 original size:45 final size:45
Alignment explanation
Indices: 8015778--8015945 Score: 179
Period size: 45 Copynumber: 3.7 Consensus size: 45
8015768 TGGTTGAGCA
8015778 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
* *
8015823 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCGAA-T--G
*
8015868 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATG
*
8015915 -CCTGAGCTCGTTGAGTTGAGT-CGAGTTCACT
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACT
8015946 TAGGGGCGGG
Statistics
Matches: 105, Mismatches: 6, Indels: 26
0.77 0.04 0.19
Matches are distributed among these distances:
42 4 0.04
43 7 0.07
44 11 0.10
45 46 0.44
47 29 0.28
49 5 0.05
50 2 0.02
51 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
Found at i:8015932 original size:92 final size:91
Alignment explanation
Indices: 8015775--8015942 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 91
8015765 GGATGGTTGA
*
8015775 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
8015840 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGT-CGAGTTCGTGAGATGTAACTAG
*
8015867 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGTCC-GAACTCGTTGAG
8015930 TTGAGTCGAGTTC
64 TTGAGTCGAGTTC
8015943 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
91 9 0.12
92 60 0.83
93 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCGAGTTCGTGAGATGTAACTAG
Found at i:8020038 original size:27 final size:28
Alignment explanation
Indices: 8019990--8020148 Score: 131
Period size: 27 Copynumber: 5.9 Consensus size: 28
8019980 ACAAGGATGC
*
8019990 CAGATAT-TGTGAC-GAAGTCACCAGATA
1 CAGATATATGTGACAG-AGCCACCAGATA
8020017 CAGATATTAT-T-ACAGAGCCACCAGA-A
1 CAGATA-TATGTGACAGAGCCACCAGATA
*
8020043 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATATATGTGACAGAGCCACCAGATA
* * *
8020070 CAGATA-ATTGTGGCATAGCCACCAG-GA
1 CAGATATA-TGTGACAGAGCCACCAGATA
* *
8020097 CAGATATATGTGGCATAGCCACCAGAT-
1 CAGATATATGTGACAGAGCCACCAGATA
* *
8020124 CAGATA-ATTGTGGCATAGCCACCAG
1 CAGATATA-TGTGACAGAGCCACCAG
8020149 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 5, Indels: 22
0.81 0.03 0.15
Matches are distributed among these distances:
25 3 0.03
26 10 0.09
27 98 0.84
28 4 0.03
29 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (28 bp):
CAGATATATGTGACAGAGCCACCAGATA
Found at i:8020149 original size:54 final size:54
Alignment explanation
Indices: 8020032--8020151 Score: 222
Period size: 54 Copynumber: 2.2 Consensus size: 54
8020022 ATTATTACAG
*
8020032 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCAT
1 AGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCAT
*
8020086 AGCCACCAGGACAGATATATGTGGCATAGCCACCAGATCAGATAATTGTGGCAT
1 AGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCAT
8020140 AGCCACCAGGAC
1 AGCCACCAGGAC
8020152 GCTTCCTCCA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
AGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCAT
Found at i:8026172 original size:27 final size:28
Alignment explanation
Indices: 8026088--8026185 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
8026078 CATGAGATTG
* * * *
8026088 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
8026117 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
8026145 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
8026172 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
8026186 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:8026196 original size:27 final size:27
Alignment explanation
Indices: 8026116--8026198 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
8026106 TAAATTGTAC
* *
8026116 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
8026144 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
8026171 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
8026198 A
1 A
8026199 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:8032703 original size:51 final size:51
Alignment explanation
Indices: 8032626--8032875 Score: 376
Period size: 51 Copynumber: 4.9 Consensus size: 51
8032616 CATATACACG
* * * *
8032626 GTGGCTTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACGAG
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
*
8032677 GTGGCCTTCACAAAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
8032728 GTGGCCTTCACATAGTACCACACTTGTGTCCAAATCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * * *
8032779 GTGGTCTTCAAATAGTACCACACTTGTGTCCAAAGCTATTATATTCAAAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
8032830 GTGGCCTTCACATTGTACCACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
8032876 CTAAGGTTCA
Statistics
Matches: 182, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
50 1 0.01
51 181 0.99
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:8032950 original size:28 final size:27
Alignment explanation
Indices: 8032915--8033002 Score: 110
Period size: 28 Copynumber: 3.3 Consensus size: 27
8032905 AGCACAAAGA
8032915 TGCCATGGACTTATTTCATTTAGCACAT
1 TGCCATGGACTTATTTCA-TTAGCACAT
* *
8032943 TGCCATGGACTTATTTCACT--CA-GT
1 TGCCATGGACTTATTTCATTAGCACAT
*
8032967 TGCCATGGTCTTATTTCACTTAGCACAT
1 TGCCATGGACTTATTTCA-TTAGCACAT
8032995 TGCCATGG
1 TGCCATGG
8033003 TCTAACCATG
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
24 18 0.35
25 3 0.06
27 3 0.06
28 27 0.53
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.38
Consensus pattern (27 bp):
TGCCATGGACTTATTTCATTAGCACAT
Found at i:8034811 original size:13 final size:13
Alignment explanation
Indices: 8034795--8034819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8034785 TTAAATTAGT
8034795 TAATTAGTTTAAA
1 TAATTAGTTTAAA
8034808 TAATTAGTTTAA
1 TAATTAGTTTAA
8034820 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:8036941 original size:27 final size:27
Alignment explanation
Indices: 8036842--8036957 Score: 162
Period size: 28 Copynumber: 4.3 Consensus size: 27
8036832 AGCATGGCTT
* *
8036842 CCAGAACAAATA-TTGTGACAGAGTCA
1 CCAGAACAAATATTTGTGGCAGAGCCA
* *
8036868 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAAATATTTGTGGCAGAGCCA
8036896 CCAGAAACAAATATTTGTGGCAGAGCCA
1 CCAG-AACAAATATTTGTGGCAGAGCCA
*
8036924 CCAGATCAAATATTTGTGGCAGAGCCA
1 CCAGAACAAATATTTGTGGCAGAGCCA
8036951 CCAGAAC
1 CCAGAAC
8036958 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 34 0.43
28 40 0.50
29 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGAACAAATATTTGTGGCAGAGCCA
Found at i:8036943 original size:55 final size:55
Alignment explanation
Indices: 8036842--8036956 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 55
8036832 AGCATGGCTT
* *
8036842 CCAG-AACAAATATTGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAAACAAATATTGTGACAGAGCCACCAGATACAAATAATTGTGGCAGAGCCA
* *
8036896 CCAGAAACAAATATTTGTGGCAGAGCCACCAGAT-CAAATATTTGTGGCAGAGCCA
1 CCAGAAACAAATA-TTGTGACAGAGCCACCAGATACAAATAATTGTGGCAGAGCCA
8036951 CCAGAA
1 CCAGAA
8036957 CGCTTCCTCC
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
54 4 0.07
55 33 0.60
56 18 0.33
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (55 bp):
CCAGAAACAAATATTGTGACAGAGCCACCAGATACAAATAATTGTGGCAGAGCCA
Found at i:8038054 original size:17 final size:17
Alignment explanation
Indices: 8038032--8038064 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8038022 TTGGATATGG
8038032 AGAAAAAAAAAGATGAA
1 AGAAAAAAAAAGATGAA
*
8038049 AGAAAAGAAAAGATGA
1 AGAAAAAAAAAGATGA
8038065 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (17 bp):
AGAAAAAAAAAGATGAA
Found at i:8044808 original size:28 final size:28
Alignment explanation
Indices: 8044769--8044849 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
8044759 TGGCTTCTAG
* * *
8044769 AACAGAT-ATTGTGACAGAGTCACTAGA
1 AACAGATAATTGTGGCAGAGCCACCAGA
* *
8044796 TATAGATAATTGTGGCAGAGCCACCAGA
1 AACAGATAATTGTGGCAGAGCCACCAGA
*
8044824 AACAGATATTTGTGGCAGAGCCACCA
1 AACAGATAATTGTGGCAGAGCCACCA
8044850 TAACACTTCC
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 5 0.11
28 40 0.89
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (28 bp):
AACAGATAATTGTGGCAGAGCCACCAGA
Found at i:8045951 original size:17 final size:17
Alignment explanation
Indices: 8045929--8045961 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8045919 TCGGCTATGG
8045929 AGAAAAGAAAAGATGAT
1 AGAAAAGAAAAGATGAT
8045946 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
8045962 GAAGGGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAT
Found at i:8050902 original size:26 final size:26
Alignment explanation
Indices: 8050861--8050950 Score: 96
Period size: 26 Copynumber: 3.3 Consensus size: 26
8050851 CCTATTTTAT
8050861 TTTTA-TTTATTCTTATTCTTATTTTC
1 TTTTATTTTATT-TTATTCTTATTTTC
8050887 TTTTATTTTATTTTATTCTTATTTTTC
1 TTTTATTTTATTTTATTCTTA-TTTTC
*
8050914 TTTTGATTTTTATTTTCATT-TAAATTTT-
1 TTTT-A-TTTTATTTT-ATTCT-TATTTTC
8050942 TTTTATTTT
1 TTTTATTTT
8050951 GAAAGACATA
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
26 18 0.32
27 16 0.28
28 5 0.09
29 14 0.25
30 4 0.07
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.76
Consensus pattern (26 bp):
TTTTATTTTATTTTATTCTTATTTTC
Found at i:8050928 original size:18 final size:17
Alignment explanation
Indices: 8050855--8050934 Score: 76
Period size: 16 Copynumber: 4.8 Consensus size: 17
8050845 AATCCTCCTA
8050855 TTTTATTTTTA-TTTAT
1 TTTTATTTTTATTTTAT
* * *
8050871 TCTTATTCTTATTTT-C
1 TTTTATTTTTATTTTAT
8050887 TTTTA-TTTTATTTTAT
1 TTTTATTTTTATTTTAT
* *
8050903 TCTTATTTTTCTTTTGAT
1 TTTTATTTTTATTTT-AT
*
8050921 TTTTATTTTCATTT
1 TTTTATTTTTATTT
8050935 AAATTTTTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
15 8 0.16
16 17 0.35
17 11 0.22
18 13 0.27
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATTTTAT
Found at i:8050950 original size:6 final size:6
Alignment explanation
Indices: 8050855--8050934 Score: 55
Period size: 6 Copynumber: 14.3 Consensus size: 6
8050845 AATCCTCCTA
* * *
8050855 TTTTAT TTTTA- -TTTAT TCTTAT TCTTA- TTTT-C TTTTA- TTTTA-
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * * *
8050897 TTTTAT TCTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
8050935 AAATTTTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
4 4 0.07
5 17 0.28
6 39 0.65
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:8052853 original size:13 final size:13
Alignment explanation
Indices: 8052837--8052861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8052827 TTAAATTATT
8052837 TAATTAGTTTAAA
1 TAATTAGTTTAAA
8052850 TAATTAGTTTAA
1 TAATTAGTTTAA
8052862 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:8068835 original size:42 final size:42
Alignment explanation
Indices: 8068783--8068948 Score: 201
Period size: 42 Copynumber: 4.0 Consensus size: 42
8068773 CTCAGGAATA
* * * *
8068783 TCGCTCACTAAGTGCCAAT-AAGTAGCCGAAGCTAACTCAATC
1 TCGCACACTAAGTGCCAATGCA-TAGCCAAAGCTATCTCAATC
* **
8068825 AT-GCACACTAAGTGTCAATGCATAGCCAAAGCTATCTTGATC
1 -TCGCACACTAAGTGCCAATGCATAGCCAAAGCTATCTCAATC
* * *
8068867 TCGCACACTAAGTGCTAATGCATAGCCAAAGCTATCCCGATC
1 TCGCACACTAAGTGCCAATGCATAGCCAAAGCTATCTCAATC
*
8068909 TCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTCAA
1 TCGCACACTAAGTGCCAATGCATAGCCAAAGCTATCTCAA
8068949 ATATTTCCGT
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 103 0.97
43 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (42 bp):
TCGCACACTAAGTGCCAATGCATAGCCAAAGCTATCTCAATC
Found at i:8069140 original size:13 final size:13
Alignment explanation
Indices: 8069122--8069154 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
8069112 TTGATCTAAA
8069122 TTAATAATTTCAT
1 TTAATAATTTCAT
8069135 TTAATAATTTCAT
1 TTAATAATTTCAT
*
8069148 TCAATAA
1 TTAATAA
8069155 ATTAATTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAATAATTTCAT
Found at i:8073182 original size:42 final size:41
Alignment explanation
Indices: 8073136--8073218 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 41
8073126 TTGATGCTGC
*
8073136 ATCCCAGACACGGTCTTACACGAAATCTCATACCGAAGCCAT
1 ATCCCAGACACAGTCTTACACG-AATCTCATACCGAAGCCAT
* * * * *
8073178 ATCCCAGATATAGTCTTACACGGATCTCATATCGATGCCAT
1 ATCCCAGACACAGTCTTACACGAATCTCATACCGAAGCCAT
8073219 GTCCAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
41 16 0.46
42 19 0.54
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.24
Consensus pattern (41 bp):
ATCCCAGACACAGTCTTACACGAATCTCATACCGAAGCCAT
Found at i:8073235 original size:41 final size:42
Alignment explanation
Indices: 8073147--8073238 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 42
8073137 TCCCAGACAC
* * *
8073147 GGTCTTACACGAAATCTCATACCGAAGCCATATCCCAGATAT
1 GGTCTTACACGAAATCTCATACCGAAGCCATATCCAAAAAAT
* * * * *
8073189 AGTCTTACACG-GATCTCATATCGATGCCATGTCCAAAAAAT
1 GGTCTTACACGAAATCTCATACCGAAGCCATATCCAAAAAAT
8073230 GGTCTTACA
1 GGTCTTACA
8073239 TGTATCACAA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 31 0.76
42 10 0.24
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCTCATACCGAAGCCATATCCAAAAAAT
Found at i:8073293 original size:37 final size:37
Alignment explanation
Indices: 8073228--8073348 Score: 174
Period size: 37 Copynumber: 3.3 Consensus size: 37
8073218 TGTCCAAAAA
* *
8073228 ATGGTCTTACATGT-ATCACAATGTCATAGCCCAGCT
1 ATGGTCTTACATGTCATCACGATGCCATAGCCCAGCT
* *
8073264 ATGGTCATACATGTCATCACGATGCCATAGCCCAACT
1 ATGGTCTTACATGTCATCACGATGCCATAGCCCAGCT
*
8073301 ATGGTCTTACATG-CTATTACGATGCCATAGCCCAGCT
1 ATGGTCTTACATGTC-ATCACGATGCCATAGCCCAGCT
8073338 ATGGTCTTACA
1 ATGGTCTTACA
8073349 CGTACTCACA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
36 14 0.18
37 62 0.82
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (37 bp):
ATGGTCTTACATGTCATCACGATGCCATAGCCCAGCT
Found at i:8073385 original size:78 final size:73
Alignment explanation
Indices: 8073228--8073387 Score: 187
Period size: 74 Copynumber: 2.1 Consensus size: 73
8073218 TGTCCAAAAA
* *
8073228 ATGGTCTTACATGTATCACAATGTCATAGCCCAGCTATGGTCATACATGTCATCACGATGCCATA
1 ATGGTCTTACATGTATCACAATGCCATAGCCCAGCTATGGTCATACACGTCATCACGATGCCATA
*
8073293 GCCCAACT
66 GCCCAACC
* * *
8073301 ATGGTCTTACATGCTATTACGATGCCATAGCCCAGCTATGGTCTTACACGT-ACTCACATGTATT
1 ATGGTCTTACATG-TATCACAATGCCATAGCCCAGCTATGGTCATACACGTCA-TCAC--G-A-T
* *
8073365 GCCATGGTCCAACC
60 GCCATAGCCCAACC
8073379 ATGGTCTTA
1 ATGGTCTTA
8073388 TCCGTCAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
73 14 0.19
74 36 0.49
76 1 0.01
77 1 0.01
78 21 0.29
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (73 bp):
ATGGTCTTACATGTATCACAATGCCATAGCCCAGCTATGGTCATACACGTCATCACGATGCCATA
GCCCAACC
Found at i:8075386 original size:32 final size:32
Alignment explanation
Indices: 8075350--8075416 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
8075340 TACTCAATTG
* * *
8075350 AATTTTTGTGCATACTTATACCATCTTGTACC
1 AATTTTCGTACATACTTATACCATCTCGTACC
*
8075382 AATTTTCGTACATACTTGTACCATCTCGTACC
1 AATTTTCGTACATACTTATACCATCTCGTACC
8075414 AAT
1 AAT
8075417 CTCATACTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (32 bp):
AATTTTCGTACATACTTATACCATCTCGTACC
Found at i:8075556 original size:42 final size:42
Alignment explanation
Indices: 8075485--8075648 Score: 175
Period size: 42 Copynumber: 3.9 Consensus size: 42
8075475 CTCGGGAATA
* * * * * * *
8075485 TCGCTCACTAAGTGCCAATACGTACCCGAAGCAAACTCAATC
1 TCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTCGATC
* * *
8075527 ACGTACACTAAGTGCCAATGCATAGCCGAAGCTATCTTGATC
1 TCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTCGATC
* * * * * *
8075569 TCACACACTAAGTGCTAATGTAAAGCTGAAGCTATCCCGATC
1 TCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTCGATC
*
8075611 TCGCACACTAAGTGCCAATGTATAGCCGAAGCTATCTC
1 TCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
8075649 AAATATTTCC
Statistics
Matches: 98, Mismatches: 24, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 98 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (42 bp):
TCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTCGATC
Found at i:8079689 original size:32 final size:33
Alignment explanation
Indices: 8079629--8079691 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
8079619 TGCAGTAGCA
** *
8079629 GTCTGGGCCTGAGCCCTATTCAGTAACAGTGCT
1 GTCTGGGCCTGAGCCCTAAACAGAAACAGTGCT
*
8079662 GTCTGGGCCT-TGCCCTAAACAGAAACAGTG
1 GTCTGGGCCTGAGCCCTAAACAGAAACAGTG
8079692 TGGGCCTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 16 0.62
33 10 0.38
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (33 bp):
GTCTGGGCCTGAGCCCTAAACAGAAACAGTGCT
Found at i:8079882 original size:27 final size:27
Alignment explanation
Indices: 8079829--8079897 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
8079819 CAATATCGCA
** *
8079829 GCAAAGCTGCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAATAAATGTG
**
8079856 GCAAAGCCACCAGTAACAATAGTTGTG
1 GCAAAGCCACCAGTAACAATAAATGTG
*
8079883 GCAGAGCCACCAGTA
1 GCAAAGCCACCAGTA
8079898 TAGTACTTCG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAATAAATGTG
Found at i:8080346 original size:17 final size:19
Alignment explanation
Indices: 8080324--8080365 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
8080314 AATCTACATG
8080324 GGCCCACA-AGCCCATTT-
1 GGCCCACACAGCCCATTTC
*
8080341 GGCCCACACGGCCCATTTC
1 GGCCCACACAGCCCATTTC
8080360 GGCCCA
1 GGCCCA
8080366 ACGTGACCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.19, C:0.45, G:0.21, T:0.14
Consensus pattern (19 bp):
GGCCCACACAGCCCATTTC
Found at i:8087577 original size:41 final size:41
Alignment explanation
Indices: 8087531--8087612 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
8087521 ACATATCGAT
* *
8087531 GCCATGGTCTTACTCGCACACATAAATCAGAATTCTATGTC
1 GCCATGGTCTTAATCACACACATAAATCAGAATTCTATGTC
*
8087572 GCCATGGTCTTAATCACACACATAAATCATAATTCTATGTC
1 GCCATGGTCTTAATCACACACATAAATCAGAATTCTATGTC
8087613 ATGACATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (41 bp):
GCCATGGTCTTAATCACACACATAAATCAGAATTCTATGTC
Found at i:8088954 original size:21 final size:21
Alignment explanation
Indices: 8088928--8088974 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8088918 TCTCATTGCA
* *
8088928 TCCTCTATCACCCACGTTGTT
1 TCCTCTAGCACCCACGTTCTT
*
8088949 TCCTCTGGCACCCACGTTCTT
1 TCCTCTAGCACCCACGTTCTT
8088970 TCCTC
1 TCCTC
8088975 AACTCCATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.11, C:0.43, G:0.11, T:0.36
Consensus pattern (21 bp):
TCCTCTAGCACCCACGTTCTT
Found at i:8092449 original size:36 final size:36
Alignment explanation
Indices: 8092402--8092474 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
8092392 AAATCTCGTG
8092402 TTCTGCACTGGATTCTCTTCAGCTAACCATGGACAA
1 TTCTGCACTGGATTCTCTTCAGCTAACCATGGACAA
* *
8092438 TTCTGCACTGGATTCTCTTTAGCTAACCCTGGACAA
1 TTCTGCACTGGATTCTCTTCAGCTAACCATGGACAA
8092474 T
1 T
8092475 CTCAAATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.33
Consensus pattern (36 bp):
TTCTGCACTGGATTCTCTTCAGCTAACCATGGACAA
Found at i:8094477 original size:79 final size:81
Alignment explanation
Indices: 8094368--8094550 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
8094358 TACTCGTTCA
* *
8094368 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACCCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACCCGCACAAATGCCTTC-GGATCTTAACCCGG
* * *
8094431 ATTTAGTGAC-TCGCACC
65 ATATAGTCACTTAGCA-C
* * **
8094448 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGGACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACCCGCACAAATGCCTTCGGATCTTAACCCGGA
*
8094511 TATGGTCACTTAGCAC
66 TATAGTCACTTAGCAC
*
8094527 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
8094551 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACCCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:8094550 original size:40 final size:40
Alignment explanation
Indices: 8094347--8094550 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
8094337 CGGAATTTAA
** *
8094347 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
8094387 CCGGTTATAGTAACCCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
8094427 CCGGATTTAGTGACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
8094466 CCGGA-ATTAGTAACTCGGACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
8094506 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
8094546 CCGGA
1 CCGGA
8094551 CATCATTCGA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 91 0.67
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:8107248 original size:19 final size:20
Alignment explanation
Indices: 8107224--8107263 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
8107214 GCAATTATGA
*
8107224 TTTTTTATTTTATT-TGAGT
1 TTTTTTATGTTATTCTGAGT
8107243 TTTTTTATGTTATTCTGAGT
1 TTTTTTATGTTATTCTGAGT
8107263 T
1 T
8107264 ATGGAATGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.15, C:0.03, G:0.12, T:0.70
Consensus pattern (20 bp):
TTTTTTATGTTATTCTGAGT
Found at i:8109135 original size:40 final size:40
Alignment explanation
Indices: 8109086--8109161 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
8109076 ATAGTTGTTG
8109086 GGTAAAGGTTATGAATTGATTAAATTAAGGAATTTAGTTA
1 GGTAAAGGTTATGAATTGATTAAATTAAGGAATTTAGTTA
* *
8109126 GGTAAAGGTTGTGAATTGATTAAATTAATGAATTTA
1 GGTAAAGGTTATGAATTGATTAAATTAAGGAATTTA
8109162 ATCATTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.38
Consensus pattern (40 bp):
GGTAAAGGTTATGAATTGATTAAATTAAGGAATTTAGTTA
Found at i:8111466 original size:40 final size:40
Alignment explanation
Indices: 8111440--8111590 Score: 257
Period size: 40 Copynumber: 3.8 Consensus size: 40
8111430 ACACATAGCT
* *
8111440 GAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGTC
1 GAAGCTATGTCGAATCGCACACTAAGTGCCATATATAGTC
*
8111480 GAAGCTATGTTGAATCGCACACTAAGTGCCATATATAGTC
1 GAAGCTATGTCGAATCGCACACTAAGTGCCATATATAGTC
*
8111520 GAAGCTATGTTGAATCGCACACTAAGTGCCATATATAGTC
1 GAAGCTATGTCGAATCGCACACTAAGTGCCATATATAGTC
*
8111560 GAAGCTATGTCGAATCACACACTAAGTGCCA
1 GAAGCTATGTCGAATCGCACACTAAGTGCCA
8111591 CAAATAGCCG
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (40 bp):
GAAGCTATGTCGAATCGCACACTAAGTGCCATATATAGTC
Found at i:8112113 original size:21 final size:20
Alignment explanation
Indices: 8112089--8112128 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8112079 CTTGTTTATA
*
8112089 TATCAACAAGCATTCAAAATC
1 TATCAACAAACA-TCAAAATC
*
8112110 TATCATCAAACATCAAAAT
1 TATCAACAAACATCAAAAT
8112129 ACTCATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.50, C:0.23, G:0.03, T:0.25
Consensus pattern (20 bp):
TATCAACAAACATCAAAATC
Found at i:8118624 original size:40 final size:40
Alignment explanation
Indices: 8118579--8118673 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
8118569 ATCTCAAATC
* * *
8118579 ACACACTAAGTGCCATATATAGCCGAAGCTATGTCGAGTC
1 ACACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATA
* * *
8118619 GCACACTAAGTGCCATATGTAGCTAAAGCTATGTCGAATA
1 ACACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATA
*
8118659 ATACACTAAGTGCCA
1 ACACACTAAGTGCCA
8118674 CAAATATTCG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (40 bp):
ACACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATA
Found at i:8120035 original size:20 final size:20
Alignment explanation
Indices: 8120012--8120051 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8120002 AAATAGTAGC
8120012 TCATCCAAATAAACAGTATT
1 TCATCCAAATAAACAGTATT
*
8120032 TCATCCATATAAACAGTATT
1 TCATCCAAATAAACAGTATT
8120052 ATGCCGGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (20 bp):
TCATCCAAATAAACAGTATT
Found at i:8120253 original size:24 final size:23
Alignment explanation
Indices: 8120225--8120303 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 23
8120215 TAAACTTTGG
8120225 CGAGCTGAGAACAGTAAGCTCTTA
1 CGAGCTGA-AACAGTAAGCTCTTA
* * **
8120249 TGAGCTGAAACGGTAAGCTCCAA
1 CGAGCTGAAACAGTAAGCTCTTA
* *
8120272 CGAGCTAAAAATAGTAAGCTCTTA
1 CGAGCT-GAAACAGTAAGCTCTTA
*
8120296 CAAGCTGA
1 CGAGCTGA
8120304 TATATCGGTA
Statistics
Matches: 42, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
23 18 0.43
24 24 0.57
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (23 bp):
CGAGCTGAAACAGTAAGCTCTTA
Found at i:8120267 original size:23 final size:23
Alignment explanation
Indices: 8120192--8120268 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
8120182 TAATGAACAA
*
8120192 TAAGCTC-TATTGAGCTGAAGCGG
1 TAAGCTCTTA-TGAGCTGAAACGG
* ** *
8120215 TAAACT-TTGGCGAGCTGAGAACAG
1 TAAGCTCTT-ATGAGCTGA-AACGG
8120239 TAAGCTCTTATGAGCTGAAACGG
1 TAAGCTCTTATGAGCTGAAACGG
8120262 TAAGCTC
1 TAAGCTC
8120269 CAACGAGCTA
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
23 24 0.59
24 15 0.37
25 2 0.05
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (23 bp):
TAAGCTCTTATGAGCTGAAACGG
Found at i:8120276 original size:23 final size:24
Alignment explanation
Indices: 8120225--8120292 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 24
8120215 TAAACTTTGG
**
8120225 CGAGCTGAGAACAGTAAGCTCTTA
1 CGAGCTGAGAACAGTAAGCTCCAA
* *
8120249 TGAGCTGA-AACGGTAAGCTCCAA
1 CGAGCTGAGAACAGTAAGCTCCAA
* * *
8120272 CGAGCTAAAAATAGTAAGCTC
1 CGAGCTGAGAACAGTAAGCTC
8120293 TTACAAGCTG
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
23 18 0.51
24 17 0.49
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (24 bp):
CGAGCTGAGAACAGTAAGCTCCAA
Found at i:8120276 original size:47 final size:50
Alignment explanation
Indices: 8120225--8120318 Score: 122
Period size: 47 Copynumber: 1.9 Consensus size: 50
8120215 TAAACTTTGG
* * **
8120225 CGAGCTGAGAACAGTAAGCTCTTATGAGCTGA-A-A-CGGTAAGCTCCAA
1 CGAGCTAAAAACAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTCCAA
*
8120272 CGAGCTAAAAATAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTC
1 CGAGCTAAAAACAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTC
8120319 ATTCGACTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
47 27 0.69
48 1 0.03
49 1 0.03
50 10 0.26
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (50 bp):
CGAGCTAAAAACAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTCCAA
Found at i:8123184 original size:27 final size:27
Alignment explanation
Indices: 8123154--8123329 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
8123144 ATTGAGTCCA
* * * *
8123154 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* *
8123181 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
8123208 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTCAAA-TCG
** * *
8123236 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAGTCAAATCG
* **
8123263 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAGTCAAATCG
*
8123290 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAGTCAAATCG
8123317 CACACTTAGTGCT
1 CACACTTAGTGCT
8123330 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAAATCG
Found at i:8123291 original size:82 final size:81
Alignment explanation
Indices: 8123173--8123328 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
8123163 TGCTATATAA
* *
8123173 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
8123238 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
8123255 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
8123319 CACTTAGTGC
65 CACTTAGTGC
8123329 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8134599 original size:42 final size:42
Alignment explanation
Indices: 8134486--8134602 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
8134476 TGGAAAGCTC
* * *
8134486 ATACAATGCCAATGTCCCAGATGTGGTCTTACATGTAAACAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACACGTAAACAA
* * *
8134528 ATACGATGCCACTATCCCAAACAG-GGTCTTACACG-AAATCAA
1 ATACGATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAA-CAA
* *
8134570 ATACGATGCCAATGTCCCAGGCGTTGTCTTACA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACA
8134603 TGATAACACA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 4 0.07
42 56 0.92
43 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACGTGGTCTTACACGTAAACAA
Found at i:8137503 original size:27 final size:27
Alignment explanation
Indices: 8137465--8137631 Score: 178
Period size: 27 Copynumber: 6.2 Consensus size: 27
8137455 CCCTGTTTAG
* * *
8137465 AATACCCTTGGTTTACAAAATTACCAA
1 AATACCCTTGATTTGCAAAATTACCGA
* *
8137492 AATACCCTTGGTTTGTAAAATTACCGA
1 AATACCCTTGATTTGCAAAATTACCGA
*
8137519 AATA-CCTCTGATTTGTAAAATTACCGA
1 AATACCCT-TGATTTGCAAAATTACCGA
**
8137546 AATACCCCCGATTTGCAAAATTACCGA
1 AATACCCTTGATTTGCAAAATTACCGA
*
8137573 AATA-CCTCTGATTTGCAAAATTACTGA
1 AATACCCT-TGATTTGCAAAATTACCGA
* * **
8137600 AATACCC-CGATTTGTAAAATTACTAA
1 AATACCCTTGATTTGCAAAATTACCGA
8137626 AATACC
1 AATACC
8137632 TTCAACTTGT
Statistics
Matches: 123, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.22
27 92 0.75
28 4 0.03
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AATACCCTTGATTTGCAAAATTACCGA
Found at i:8137539 original size:54 final size:53
Alignment explanation
Indices: 8137481--8137675 Score: 221
Period size: 54 Copynumber: 3.6 Consensus size: 53
8137471 CTTGGTTTAC
* *
8137481 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCTCTGATTTGT
1 AAAATTACCAAAATACCC-CGATTTGTAAAATTACCGAAATACCTCTGATTTGT
* * *
8137535 AAAATTACCGAAATACCCCCGATTTGCAAAATTACCGAAATACCTCTGATTTGC
1 AAAATTACCAAAATA-CCCCGATTTGTAAAATTACCGAAATACCTCTGATTTGT
** ** * *
8137589 AAAATTACTGAAATACCCCGATTTGTAAAATTACTAAAATACCT-TCAACTTGT
1 AAAATTACCAAAATACCCCGATTTGTAAAATTACCGAAATACCTCT-GATTTGT
* * *
8137642 ACAATTACCAAAGTACCCCCGATTTATAAAATTA
1 AAAATTACCAAAATA-CCCCGATTTGTAAAATTA
8137676 TCGTTTTACC
Statistics
Matches: 121, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
52 1 0.01
53 41 0.34
54 76 0.63
55 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCGATTTGTAAAATTACCGAAATACCTCTGATTTGT
Found at i:8137602 original size:81 final size:80
Alignment explanation
Indices: 8137480--8137631 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 80
8137470 CCTTGGTTTA
* * * *
8137480 CAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCTCTGATTTGTAAAATTACCG
1 CAAAATTACCAAAATACCCTTGATTTGCAAAATTACCGAAATACC-CCGATTTGTAAAATTACCA
8137545 AAATACCCCCGATTTG
65 AAATACCCCCGATTTG
* * *
8137561 CAAAATTACCGAAATA-CCTCTGATTTGCAAAATTACTGAAATACCCCGATTTGTAAAATTACTA
1 CAAAATTACCAAAATACCCT-TGATTTGCAAAATTACCGAAATACCCCGATTTGTAAAATTACCA
8137625 AAATACC
65 AAATACC
8137632 TTCAACTTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 26 0.41
81 37 0.59
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (80 bp):
CAAAATTACCAAAATACCCTTGATTTGCAAAATTACCGAAATACCCCGATTTGTAAAATTACCAA
AATACCCCCGATTTG
Found at i:8137674 original size:27 final size:26
Alignment explanation
Indices: 8137481--8137675 Score: 167
Period size: 27 Copynumber: 7.3 Consensus size: 26
8137471 CTTGGTTTAC
** *
8137481 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACC-AAATACCCCCGATTTGT
* *
8137508 AAAATTACCGAAATACCTCTGATTTGT
1 AAAATTACC-AAATACCCCCGATTTGT
*
8137535 AAAATTACCGAAATACCCCCGATTTGC
1 AAAATTACC-AAATACCCCCGATTTGT
* * *
8137562 AAAATTACCGAAATACCTCTGATTTGC
1 AAAATTACC-AAATACCCCCGATTTGT
*
8137589 AAAATTACTGAAATA-CCCCGATTTGT
1 AAAATTAC-CAAATACCCCCGATTTGT
* ** * *
8137615 AAAATTACTAAAATACCTTCAACTTGT
1 AAAATTAC-CAAATACCCCCGATTTGT
* *
8137642 ACAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAA-TACCCCCGATTTGT
8137669 AAAATTA
1 AAAATTA
8137676 TCGTTTTACC
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 25 0.18
27 114 0.82
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAATACCCCCGATTTGT
Found at i:8137693 original size:107 final size:108
Alignment explanation
Indices: 8137476--8137704 Score: 259
Period size: 107 Copynumber: 2.1 Consensus size: 108
8137466 ATACCCTTGG
* * * * *
8137476 TTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAATACCTCTGATTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCTCTAACTTGTAAAATT
*
8137541 ACCGAAATACCCCCGATTTGCAAAATTACCGAAATACCTCTGA
66 ACCGAAATACCCCCGATTTACAAAATTACCGAAATACCTCTGA
* ** * *
8137584 TTTGCAAAATTACTGAAATACCC-CGATTTGTAAAATTACTAAAATACCT-TCAACTTGTACAAT
1 TTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCTCT-AACTTGTAAAAT
* * ***
8137647 TACC-AAAGTACCCCCGATTTATAAAATTATCGTTTTACC-CTCGA
65 TACCGAAA-TACCCCCGATTTACAAAATTACCGAAATACCTCT-GA
8137691 TTTACAAAATTACC
1 TTTACAAAATTACC
8137705 GACACACCCT
Statistics
Matches: 100, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
106 6 0.06
107 74 0.74
108 20 0.20
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (108 bp):
TTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCTCTAACTTGTAAAATT
ACCGAAATACCCCCGATTTACAAAATTACCGAAATACCTCTGA
Found at i:8137730 original size:27 final size:27
Alignment explanation
Indices: 8137698--8137876 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
8137688 CGATTTACAA
* *
8137698 AATTACCGACACACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * * *
8137725 ACTTACTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
*
8137752 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
** * *
8137779 AATTACTAAAATAACCC-TGTAGGATAG
1 AATTACCGAAAT-ACCCTTATAGGGTAG
* *
8137806 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
* * * *
8137833 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAG
*
8137860 AATTACCGAGATACCCT
1 AATTACCGAAATACCCT
8137877 CGTGGGTAAA
Statistics
Matches: 123, Mismatches: 27, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
26 4 0.03
27 115 0.93
28 4 0.03
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTATAGGGTAG
Found at i:8137756 original size:54 final size:53
Alignment explanation
Indices: 8137698--8137876 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 53
8137688 CGATTTACAA
* * *
8137698 AATTACCGACACACCCTTATAGGGTAGACTTACTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCC-TGTAAGGTAG
* *
8137752 AATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATAACCCTGT-AGGATAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAAT-ACCCTGTAAGG-TAG
* * * *
8137806 AATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAATA-CCCTGTAAGGTAG
*
8137860 AATTACCGAGATACCCT
1 AATTACCGAAATACCCT
8137877 CGTGGGTAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
53 4 0.04
54 98 0.91
55 6 0.06
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (53 bp):
AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCCTGTAAGGTAG
Found at i:8153719 original size:12 final size:12
Alignment explanation
Indices: 8153702--8153732 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8153692 GAACCCTAAA
8153702 TCTTTTTTTTTC
1 TCTTTTTTTTTC
*
8153714 TCTTTTTTTTTG
1 TCTTTTTTTTTC
8153726 TCTTTTT
1 TCTTTTT
8153733 CTTCAAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.84
Consensus pattern (12 bp):
TCTTTTTTTTTC
Found at i:8159449 original size:24 final size:26
Alignment explanation
Indices: 8159422--8159474 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
8159412 TCATTTTTCC
*
8159422 GCTCTTTC-AAGCT-ATGAACAGTAA
1 GCTCTTCCTAAGCTGATGAACAGTAA
* *
8159446 GCTCTTCCTTAGCTGATGAATAGTAA
1 GCTCTTCCTAAGCTGATGAACAGTAA
8159472 GCT
1 GCT
8159475 ATATTGAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.29
25 4 0.17
26 13 0.54
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCTCTTCCTAAGCTGATGAACAGTAA
Found at i:8159545 original size:23 final size:24
Alignment explanation
Indices: 8159437--8159578 Score: 94
Period size: 24 Copynumber: 5.9 Consensus size: 24
8159427 TTCAAGCTAT
** *
8159437 GAACAGTAAGCTCTTCCTTAGCTGA
1 GAACAGTAAGCTC-TAATGAGCTGA
* * *
8159462 TGAATAGTAAGCTATATTGAGCT-A
1 -GAACAGTAAGCTCTAATGAGCTGA
* *
8159486 AAATAGTAAGCTCTAATGAGCTGA
1 GAACAGTAAGCTCTAATGAGCTGA
* *
8159510 GAACAGTAAGCTCTTATGAGTTGA
1 GAACAGTAAGCTCTAATGAGCTGA
* * *
8159534 -AACGGTAAGCTC-CATCGAGCTAA
1 GAACAGTAAGCTCTAAT-GAGCTGA
*
8159557 AAACAGTAAGCTCTTAA-GAGCT
1 GAACAGTAAGCTC-TAATGAGCT
8159579 AATATATCGG
Statistics
Matches: 93, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
22 2 0.02
23 35 0.38
24 38 0.41
25 6 0.06
26 12 0.13
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (24 bp):
GAACAGTAAGCTCTAATGAGCTGA
Found at i:8159602 original size:50 final size:47
Alignment explanation
Indices: 8159480--8159595 Score: 117
Period size: 47 Copynumber: 2.4 Consensus size: 47
8159470 AAGCTATATT
** * * * *
8159480 GAGCTAAAATAGTAAGCTCTAAT-GAGCTGAGAACAGTAAGCTCTTAT
1 GAGCTAAAACGGTAAGCTC-CATCGAGCTAAAAACAGTAAGCTCTTAA
* *
8159527 GAGTTGAAACGGTAAGCTCCATCGAGCTAAAAACAGTAAGCTCTTAA
1 GAGCTAAAACGGTAAGCTCCATCGAGCTAAAAACAGTAAGCTCTTAA
8159574 GAGCTAATATATCGGTAAGCTC
1 GAGCTAA-A-A-CGGTAAGCTC
8159596 ATTCGAGTTG
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
46 2 0.04
47 41 0.75
48 1 0.02
49 1 0.02
50 10 0.18
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (47 bp):
GAGCTAAAACGGTAAGCTCCATCGAGCTAAAAACAGTAAGCTCTTAA
Found at i:8162861 original size:27 final size:26
Alignment explanation
Indices: 8162813--8162872 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
8162803 GCGAGGCTGG
*
8162813 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
8162840 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
8162866 CAGATAT
1 CAGATAT
8162873 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:8163579 original size:26 final size:27
Alignment explanation
Indices: 8163550--8163603 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
8163540 TCACACAAGT
*
8163550 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
8163576 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
8163603 T
1 T
8163604 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:8163667 original size:27 final size:27
Alignment explanation
Indices: 8163603--8163749 Score: 161
Period size: 27 Copynumber: 5.4 Consensus size: 27
8163593 AGGGGCAAAA
* * *
8163603 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTCTACCCTACAAGGGTATTT
* ** *
8163630 CGAAAAGTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* *
8163657 TAGTAATTCTACCTTACAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
*
8163684 TGGTAATTCTACCCTACAGGGGT-TTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* *
8163710 TCGGTAATACTACCTTACAAGGGTATTT
1 T-GGTAATTCTACCCTACAAGGGTATTT
*
8163738 CGGTAATTCTAC
1 TGGTAATTCTAC
8163750 AACTTATCAA
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 4 0.04
27 90 0.93
28 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAAGGGTATTT
Found at i:8169199 original size:27 final size:26
Alignment explanation
Indices: 8169151--8169210 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
8169141 GCGAGGCTGG
*
8169151 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
8169178 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
8169204 CAGATAT
1 CAGATAT
8169211 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:8169979 original size:27 final size:27
Alignment explanation
Indices: 8169949--8170094 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
8169939 GGGGCAAAAT
* * *
8169949 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
8169976 GGTAATTGTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
8170003 GGTAATTATACCTTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
8170030 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
8170057 AGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
8170084 GGTAATTCTAC
1 GGTAATTCTAC
8170095 AACTTATCCA
Statistics
Matches: 101, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:8173900 original size:27 final size:26
Alignment explanation
Indices: 8173833--8173904 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
8173823 CATATCGTAA
* * *
8173833 GGTAACTCAGTCATTTTACCTTACGG
1 GGTAACACAGTCATTTTAACTTACAG
*
8173859 GGTTAAAACAGTCATTTTAACTTACAAG
1 GG-TAACACAGTCATTTTAACTTAC-AG
*
8173887 GGTAACACAATCATTTTA
1 GGTAACACAGTCATTTTA
8173905 CCCTATGGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.05
27 33 0.87
28 3 0.08
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (26 bp):
GGTAACACAGTCATTTTAACTTACAG
Found at i:8173952 original size:27 final size:27
Alignment explanation
Indices: 8173897--8173979 Score: 150
Period size: 27 Copynumber: 3.1 Consensus size: 27
8173887 GGTAACACAA
8173897 TCATTTTACCCTAT-GGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
*
8173923 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAG
8173950 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
8173977 TCA
1 TCA
8173980 GCATTTCGAC
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
26 14 0.26
27 40 0.74
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCAG
Found at i:8178459 original size:29 final size:29
Alignment explanation
Indices: 8178421--8178631 Score: 284
Period size: 29 Copynumber: 7.2 Consensus size: 29
8178411 GTATCGACGC
* *
8178421 CCATCGAATATGAAAAGGTATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
*
8178450 CCATCAAATATGAAAAGGGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
8178479 CCATCGAATATGAAAAGGGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
* *
8178508 CCATC-AATTAAAGAAAATGGATGG-TTACGA
1 CCATCGAA-T-ATGAAAAGGGATGGCTT-CGA
* *
8178538 CCATCGAATATGAAAAGGGATAG-TGACGA
1 CCATCGAATATGAAAAGGGATGGCT-TCGA
*
8178567 CCATCGAATATGAAAAGGGATGGCTTCAA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
*
8178596 CCATCGAATACGAAAAGGGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
8178625 CCATCGA
1 CCATCGA
8178632 TTAAAGAAAA
Statistics
Matches: 161, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
28 2 0.01
29 135 0.84
30 22 0.14
31 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGCTTCGA
Found at i:8178581 original size:88 final size:85
Alignment explanation
Indices: 8178421--8178631 Score: 273
Period size: 88 Copynumber: 2.4 Consensus size: 85
8178411 GTATCGACGC
* * * *
8178421 CCATCGAATATGAAAAGGTATGGTTTCGACCATCAAATATGAAAAGGGATGGCTTCGACCATCGA
1 CCATCGAATAAGAAAAGG-ATGG-TTCGACCATCGAATATGAAAAGGGATAGCTACGACCATCGA
*
8178486 ATATGAAAAGGGATGGCTTCGA
64 ATATGAAAAGGGATGGCTTCAA
8178508 CCATC-AATTAAAGAAAATGGATGGTTACGACCATCGAATATGAAAAGGGATAG-TGACGACCAT
1 CCATCGAA-T-AAGAAAA-GGATGGTT-CGACCATCGAATATGAAAAGGGATAGCT-ACGACCAT
8178571 CGAATATGAAAAGGGATGGCTTCAA
61 CGAATATGAAAAGGGATGGCTTCAA
*
8178596 CCATCGAATACGAAAAGGGATGGCTTCGACCATCGA
1 CCATCGAATAAGAAAA-GGATGG-TTCGACCATCGA
8178632 TTAAAGAAAA
Statistics
Matches: 110, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
86 2 0.02
87 31 0.28
88 73 0.66
89 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (85 bp):
CCATCGAATAAGAAAAGGATGGTTCGACCATCGAATATGAAAAGGGATAGCTACGACCATCGAAT
ATGAAAAGGGATGGCTTCAA
Found at i:8178627 original size:117 final size:117
Alignment explanation
Indices: 8178421--8178650 Score: 370
Period size: 117 Copynumber: 2.0 Consensus size: 117
8178411 GTATCGACGC
* * ** *
8178421 CCATCGAATATGAAAAGGTATGGTTTCGACCATCAAATATGAAAAGGGATGGCTTCGACCATCGA
1 CCATCGAATATGAAAAGGGATAGTGACGACCATCAAATATGAAAAGGGATGGCTTCAACCATCGA
* *
8178486 ATATGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAATGGATGGTTACGA
66 ATACGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAAGGGATGGTTACGA
*
8178538 CCATCGAATATGAAAAGGGATAGTGACGACCATCGAATATGAAAAGGGATGGCTTCAACCATCGA
1 CCATCGAATATGAAAAGGGATAGTGACGACCATCAAATATGAAAAGGGATGGCTTCAACCATCGA
* *
8178603 ATACGAAAAGGGATGGCTTCGACCATCGATTAAAGAAAAGGGGTGGTT
66 ATACGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAAGGGATGGTT
8178651 TCAACCTTTA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
117 103 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (117 bp):
CCATCGAATATGAAAAGGGATAGTGACGACCATCAAATATGAAAAGGGATGGCTTCAACCATCGA
ATACGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAAGGGATGGTTACGA
Found at i:8183843 original size:27 final size:27
Alignment explanation
Indices: 8183813--8183869 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
8183803 GATTTGATTC
8183813 ATTCTACTCTTCAATCTCTTGAATTTT
1 ATTCTACTCTTCAATCTCTTGAATTTT
8183840 ATTCTACTCTTCAATCTCTTGAATTTT
1 ATTCTACTCTTCAATCTCTTGAATTTT
8183867 ATT
1 ATT
8183870 TCTTTTATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.21, G:0.04, T:0.53
Consensus pattern (27 bp):
ATTCTACTCTTCAATCTCTTGAATTTT
Found at i:8208319 original size:33 final size:33
Alignment explanation
Indices: 8208272--8208340 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
8208262 TATCGAGTAT
8208272 TCTACCGAAAAATGCCTCACCATCATACTCAAA
1 TCTACCGAAAAATGCCTCACCATCATACTCAAA
*
8208305 TCTAGCGAAAAATGCCTCACCATCATACTCAAA
1 TCTACCGAAAAATGCCTCACCATCATACTCAAA
8208338 TCT
1 TCT
8208341 TACACACGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.32, G:0.07, T:0.23
Consensus pattern (33 bp):
TCTACCGAAAAATGCCTCACCATCATACTCAAA
Found at i:8210570 original size:25 final size:24
Alignment explanation
Indices: 8210542--8210601 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
8210532 TTTGATTCGG
8210542 GAAAGAAAAAATAATTTTACCAAAT
1 GAAAGAAAAAATAATTTTACC-AAT
* * *
8210567 GAAAGCAAAAGTAATTTTAGCAAT
1 GAAAGAAAAAATAATTTTACCAAT
*
8210591 -AAAGAGAAAAT
1 GAAAGAAAAAAT
8210602 TTGATAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
23 8 0.28
24 3 0.10
25 18 0.62
ACGTcount: A:0.58, C:0.07, G:0.13, T:0.22
Consensus pattern (24 bp):
GAAAGAAAAAATAATTTTACCAAT
Found at i:8218165 original size:41 final size:41
Alignment explanation
Indices: 8218107--8218287 Score: 195
Period size: 40 Copynumber: 4.4 Consensus size: 41
8218097 TCACGAACAA
* * * *
8218107 TAAGTGCCAATACATAGCTGAAGCTCTTTTAATCTCGCACAC
1 TAAGTGCC-ATACATAGCCGAAGCTATTTCAATATCGCACAC
* * * * * *
8218149 TAAGTGCCTTACATAGCTGATGCTATCTCGATTTCGCACAC
1 TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
* * *
8218190 TGAGTGCCATATATAGCCGAAGCTATTCCAA-ATCGCACAC
1 TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
* * *
8218230 TAAGTGCCATACATAGCCGAAGCTATCTCGA-ATCGCACTC
1 TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
8218270 TAAGTGCCATACATAGCC
1 TAAGTGCCATACATAGCC
8218288 AAATTGTCGT
Statistics
Matches: 117, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
40 60 0.51
41 49 0.42
42 8 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (41 bp):
TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
Done.