Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 271 of 332
Found at i:90641303 original size:13 final size:12
Alignment explanation
Indices: 90641248--90641305 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 12
90641238 ATTTAGAATC
*
90641248 ATTTACTTGTCTT
1 ATTTATTTGT-TT
*
90641261 ATTTATTTATTT
1 ATTTATTTGTTT
*
90641273 GTTTATTT-TTT
1 ATTTATTTGTTT
90641284 ATGTTATTTGTTT
1 AT-TTATTTGTTT
90641297 GATTTATTT
1 -ATTTATTT
90641306 TATTATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 4 0.11
12 15 0.39
13 17 0.45
14 2 0.05
ACGTcount: A:0.17, C:0.03, G:0.09, T:0.71
Consensus pattern (12 bp):
ATTTATTTGTTT
Found at i:90641314 original size:24 final size:23
Alignment explanation
Indices: 90641263--90641316 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
90641253 CTTGTCTTAT
90641263 TTATTTATTTGTTTATTTTTTATG
1 TTATTTATTTGTTTATTTTTTA-G
*
90641287 TTATTTGTTTGATTTATTTTATTA-
1 TTATTTATTTG-TTTATTTT-TTAG
90641311 TTATTT
1 TTATTT
90641317 TTACTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 16 0.59
25 8 0.30
26 3 0.11
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (23 bp):
TTATTTATTTGTTTATTTTTTAG
Found at i:90641612 original size:114 final size:113
Alignment explanation
Indices: 90641448--90641675 Score: 420
Period size: 114 Copynumber: 2.0 Consensus size: 113
90641438 TTCATTTTTA
* *
90641448 TATATTTTTATATTCTTTTATTTTTTTTACTTTTATTTTTATTTTGTAATTTATTTATCTACTTA
1 TATATTTTTATATTCTTTTATTTTTTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTTA
*
90641513 TTACCTTTTAGAAATATAAAATTATCTATTATTATCATTGTTATATTT
66 TTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
90641561 TATATTTTTATATTCTTTTATTTTGTTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTT
1 TATATTTTTATATTCTTTTATTTT-TTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTT
90641626 ATTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
65 ATTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
90641675 T
1 T
90641676 TATCCCGTCT
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
113 24 0.22
114 87 0.78
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (113 bp):
TATATTTTTATATTCTTTTATTTTTTTTAATTTTAATTTTATTTTGTAATTTATTTATCTACTTA
TTACCTTTTAGAAATATAAAATTATCCATTATTATCATTGTTATATTT
Found at i:90656451 original size:41 final size:41
Alignment explanation
Indices: 90656401--90656478 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
90656391 CTGTTGATGC
*
90656401 TTGACCTTTTG-CGTCATTTTTATCATAAACACCGCTAATTG
1 TTGACCTTTTGTCGT-ATTTTTATCATAAACACAGCTAATTG
* * *
90656442 TTGATCTTTTGTGGTGTTTTTATCATAAACACAGCTA
1 TTGACCTTTTGTCGTATTTTTATCATAAACACAGCTA
90656479 CTGATTTACC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
41 30 0.94
42 2 0.06
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (41 bp):
TTGACCTTTTGTCGTATTTTTATCATAAACACAGCTAATTG
Found at i:90667350 original size:45 final size:45
Alignment explanation
Indices: 90667225--90667343 Score: 166
Period size: 45 Copynumber: 2.6 Consensus size: 45
90667215 GCTATACGCC
*
90667225 TAAAAATGAGTAAGACCATAGTTGAAAGATGCTATGACATCACGA
1 TAAAAATGAGTAAGACCATAGTTGAAAGATGCTATGACATCACAA
* * * * * *
90667270 TATAATTGAGTAAGACTATGGTTGAACGATGCTATGACATCATAA
1 TAAAAATGAGTAAGACCATAGTTGAAAGATGCTATGACATCACAA
*
90667315 TAAAAAAGAGTAAGACCATAGTTGAAAGA
1 TAAAAATGAGTAAGACCATAGTTGAAAGA
90667344 CACTATGGCA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.24
Consensus pattern (45 bp):
TAAAAATGAGTAAGACCATAGTTGAAAGATGCTATGACATCACAA
Found at i:90667464 original size:27 final size:27
Alignment explanation
Indices: 90667429--90667491 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
90667419 ATAGAATTAT
* *
90667429 GGATTGTCCAATGGGAAATTAAACATG
1 GGATAGTCCAATAGGAAATTAAACATG
*
90667456 GGATAGTCCAATAGGACATTAAACATG
1 GGATAGTCCAATAGGAAATTAAACATG
90667483 GGATAGTCC
1 GGATAGTCC
90667492 GAAAAGATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (27 bp):
GGATAGTCCAATAGGAAATTAAACATG
Found at i:90667503 original size:27 final size:27
Alignment explanation
Indices: 90667446--90667516 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
90667436 CCAATGGGAA
*
90667446 ATTAAACATGGGATAGTCCAATAGGAC
1 ATTAAACATGGGATAGTCCAATAAGAC
*
90667473 ATTAAACATGGGATAGTCCGAA-AAGAT
1 ATTAAACATGGGATAGTCC-AATAAGAC
**
90667500 ATTAAACACAGGATAGT
1 ATTAAACATGGGATAGT
90667517 TCGACGGGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 37 0.95
28 2 0.05
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.23
Consensus pattern (27 bp):
ATTAAACATGGGATAGTCCAATAAGAC
Found at i:90676065 original size:21 final size:21
Alignment explanation
Indices: 90676041--90676086 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
90676031 CACACGGGTG
* *
90676041 TGTGGGGAAACCACATGGGCA
1 TGTGGGGAAACCACAAGGCCA
90676062 TGTGGGGAAACCACAAGGCCA
1 TGTGGGGAAACCACAAGGCCA
90676083 TGTG
1 TGTG
90676087 TGAAGCCACG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.37, T:0.15
Consensus pattern (21 bp):
TGTGGGGAAACCACAAGGCCA
Found at i:90678365 original size:25 final size:24
Alignment explanation
Indices: 90678336--90678382 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
90678326 ATTAATATTC
90678336 ATATTAAT-ATGAAATAAACATAATT
1 ATATTAATAAT-AAATAAA-ATAATT
90678361 ATATTAATAATAAATAAAATAA
1 ATATTAATAATAAATAAAATAA
90678383 AAATCTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 15 0.71
26 2 0.10
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (24 bp):
ATATTAATAATAAATAAAATAATT
Found at i:90678553 original size:25 final size:25
Alignment explanation
Indices: 90678506--90678555 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
90678496 GGTTTATTTA
* *
90678506 ATATTAATATAATTATATGTATATC
1 ATATTAATATAAGTATATATATATC
90678531 ATATTAATATAAGTATTAATATATA
1 ATATTAATATAAGTA-T-ATATATA
90678556 ATTTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.67
26 1 0.05
27 6 0.29
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (25 bp):
ATATTAATATAAGTATATATATATC
Found at i:90687421 original size:24 final size:24
Alignment explanation
Indices: 90687389--90687436 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
90687379 CAATTAAGAG
90687389 ACCAAAACCCACCAAGAAAAATTC
1 ACCAAAACCCACCAAGAAAAATTC
*
90687413 ACCAAAACCGACCAAGAAAAATTC
1 ACCAAAACCCACCAAGAAAAATTC
90687437 CAAACTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.31, G:0.06, T:0.08
Consensus pattern (24 bp):
ACCAAAACCCACCAAGAAAAATTC
Found at i:90692134 original size:19 final size:17
Alignment explanation
Indices: 90692079--90692139 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
90692069 TATTAGTTTC
*
90692079 AATACATGCATCTAGTA
1 AATACATGTATCTAGTA
*
90692096 ATTA-ATGTGTATCTAGTA
1 AATACA--TGTATCTAGTA
90692114 AATACATGTATCTTAGATA
1 AATACATGTATC-TAG-TA
90692133 AATACAT
1 AATACAT
90692140 TCATGGAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 1 0.03
17 9 0.25
18 16 0.44
19 10 0.28
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (17 bp):
AATACATGTATCTAGTA
Found at i:90699738 original size:44 final size:44
Alignment explanation
Indices: 90699675--90699830 Score: 189
Period size: 42 Copynumber: 3.6 Consensus size: 44
90699665 TGTGTTATCG
*
90699675 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGTGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATT-TGATTTACA
* *
90699719 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTACA
* * * *
90699761 TGTAAGACCCTATCTGGGACAG-TAGCATTGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTTACA
90699804 TGTAAGACCATGTCTGGGA-GTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
90699831 TATACGAGCT
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 32 0.34
43 32 0.34
44 30 0.32
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTACA
Found at i:90699796 original size:43 final size:43
Alignment explanation
Indices: 90699675--90699822 Score: 176
Period size: 43 Copynumber: 3.4 Consensus size: 43
90699665 TGTGTTATCG
*
90699675 TGTAAGACCACGTCTGGGAC-GTTGGCATCGAT-TTGTGATTTACA
1 TGTAAGACCATGTCTGGGACAG-TGGCATCGATATT-TGATTT-CA
* *
90699719 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTTCG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
* * * * *
90699761 TGTAAGACCCTATCTGGGACAGTAGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
90699804 TGTAAGACCATGTCTGGGA
1 TGTAAGACCATGTCTGGGA
90699823 GTTGGCATTA
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
42 26 0.29
43 34 0.38
44 29 0.33
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
Found at i:90700929 original size:26 final size:26
Alignment explanation
Indices: 90700893--90700943 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
90700883 GAGTTGGTTC
90700893 ATGATATTATGGATTAATTGATACAA
1 ATGATATTATGGATTAATTGATACAA
90700919 ATGATATTATGGATTAATTGATACA
1 ATGATATTATGGATTAATTGATACA
90700944 TGTTTGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.04, G:0.16, T:0.39
Consensus pattern (26 bp):
ATGATATTATGGATTAATTGATACAA
Found at i:90714579 original size:29 final size:29
Alignment explanation
Indices: 90714537--90714594 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
90714527 TTTTTTACAC
90714537 ATTACTTACTTCTTCTACCATGACTCTTT
1 ATTACTTACTTCTTCTACCATGACTCTTT
* *
90714566 ATTATTTACTTCTTCTTCCATGACTCTTT
1 ATTACTTACTTCTTCTACCATGACTCTTT
90714595 TAATCTCTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.03, T:0.52
Consensus pattern (29 bp):
ATTACTTACTTCTTCTACCATGACTCTTT
Found at i:90717764 original size:5 final size:5
Alignment explanation
Indices: 90717754--90717786 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
90717744 ATAATTCTAT
90717754 TTTTA TTTTA TTTTA -TTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
90717787 CTTTATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:90717778 original size:19 final size:19
Alignment explanation
Indices: 90717754--90717792 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
90717744 ATAATTCTAT
90717754 TTTTATTTTATTTTATTTA
1 TTTTATTTTATTTTATTTA
*
90717773 TTTTATTTTATTTTCTTTA
1 TTTTATTTTATTTTATTTA
90717792 T
1 T
90717793 CAACTAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTATTTTATTTTATTTA
Found at i:90717792 original size:14 final size:14
Alignment explanation
Indices: 90717755--90717785 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
90717745 TAATTCTATT
90717755 TTTATTTTATTTTA
1 TTTATTTTATTTTA
90717769 TTTATTTTATTTTA
1 TTTATTTTATTTTA
90717783 TTT
1 TTT
90717786 TCTTTATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:90719192 original size:28 final size:28
Alignment explanation
Indices: 90719152--90719205 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
90719142 GTCAGTACTT
* *
90719152 TTTAATATCAATCAATTTATCATTATCA
1 TTTAATAGCAATCAATTAATCATTATCA
*
90719180 TTTAATAGCAATCAATTAATCTTTAT
1 TTTAATAGCAATCAATTAATCATTAT
90719206 TGTTCAGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.02, T:0.46
Consensus pattern (28 bp):
TTTAATAGCAATCAATTAATCATTATCA
Found at i:90727973 original size:21 final size:21
Alignment explanation
Indices: 90727930--90727973 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
90727920 AGTGTGATTG
* *
90727930 AATTGAAATTGTGAAAATTAA
1 AATTAAAATTGTGAAAATAAA
90727951 AATTAAAATTGT-AAATATAAA
1 AATTAAAATTGTGAAA-ATAAA
90727972 AA
1 AA
90727974 GAGTTGAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (21 bp):
AATTAAAATTGTGAAAATAAA
Found at i:90729289 original size:13 final size:14
Alignment explanation
Indices: 90729268--90729301 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
90729258 AGTTGTTAGC
* *
90729268 ACAAAAAAATTTCA
1 ACAAAAAAGTTCCA
90729282 ACAAAAAAGTTCCA
1 ACAAAAAAGTTCCA
90729296 ACAAAA
1 ACAAAA
90729302 GGCTAAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.18, G:0.03, T:0.15
Consensus pattern (14 bp):
ACAAAAAAGTTCCA
Found at i:90729920 original size:6 final size:6
Alignment explanation
Indices: 90729911--90729935 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
90729901 TTATTTTTGT
90729911 TTTAAG TTTAAG TTTAAG TTTAAG T
1 TTTAAG TTTAAG TTTAAG TTTAAG T
90729936 AATTGTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TTTAAG
Found at i:90730009 original size:20 final size:20
Alignment explanation
Indices: 90729984--90730026 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
90729974 ATTTTGGTTA
*
90729984 TTATTCTATTTTATTTTATT
1 TTATTCTATTTGATTTTATT
* *
90730004 TTATTCTCTTTGATTTTCTT
1 TTATTCTATTTGATTTTATT
90730024 TTA
1 TTA
90730027 CTTTGTACGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.72
Consensus pattern (20 bp):
TTATTCTATTTGATTTTATT
Found at i:90734384 original size:16 final size:16
Alignment explanation
Indices: 90734365--90734396 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
90734355 TTTTTTATTC
90734365 ACTTAATTGTTTGCAT
1 ACTTAATTGTTTGCAT
90734381 ACTTAATTGTTTGCAT
1 ACTTAATTGTTTGCAT
90734397 TATGCTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (16 bp):
ACTTAATTGTTTGCAT
Found at i:90743318 original size:20 final size:21
Alignment explanation
Indices: 90743268--90743322 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
90743258 ATATAAATAC
*
90743268 TTAT-AATATTTTGAAATATA
1 TTATAAATATTTTAAAATATA
* *
90743288 TTTTAAA-ATTTTAAAATTTA
1 TTATAAATATTTTAAAATATA
90743308 -TATAAATA-TTTAAAA
1 TTATAAATATTTTAAAA
90743323 CAACTAGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 12 0.41
20 15 0.52
21 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTATAAATATTTTAAAATATA
Found at i:90748762 original size:7 final size:7
Alignment explanation
Indices: 90748750--90748775 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
90748740 TAGTCGATTC
90748750 GTATTTA
1 GTATTTA
90748757 GTATTTA
1 GTATTTA
90748764 GTATTTA
1 GTATTTA
90748771 GTATT
1 GTATT
90748776 CTGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:90749447 original size:18 final size:18
Alignment explanation
Indices: 90749424--90749466 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
90749414 TGTCAGGTGC
*
90749424 GTATCCT-AGCCCTTTTAT
1 GTATCCTGA-CCCTTATAT
90749442 GTATCCTGACCCTTATAT
1 GTATCCTGACCCTTATAT
*
90749460 GTTTCCT
1 GTATCCT
90749467 TTTTCCAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTGACCCTTATAT
Found at i:90749969 original size:54 final size:55
Alignment explanation
Indices: 90749887--90750007 Score: 149
Period size: 54 Copynumber: 2.2 Consensus size: 55
90749877 TATTATTTTA
* * *
90749887 TTTAATAAAATAAAAGTTGTTTTGAATAA-AATA-ATTAT-AATTTACTTTTATATT
1 TTTAATAAAATAAAAGTTCTTTTAAATAAGAAAATATTATGAA--TACTTTTATATT
* * *
90749941 TTTAATAAAATAGAAGTTCTTTTAAATAAGAAAATATTTTGAATATTTTTATATT
1 TTTAATAAAATAAAAGTTCTTTTAAATAAGAAAATATTATGAATACTTTTATATT
90749996 TTTAATAAAATA
1 TTTAATAAAATA
90750008 TAAATAATGC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
54 26 0.45
55 26 0.45
56 4 0.07
57 2 0.03
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (55 bp):
TTTAATAAAATAAAAGTTCTTTTAAATAAGAAAATATTATGAATACTTTTATATT
Found at i:90753201 original size:126 final size:126
Alignment explanation
Indices: 90752976--90753345 Score: 607
Period size: 126 Copynumber: 2.9 Consensus size: 126
90752966 AAATAGGATC
* * *
90752976 TACTGTAGAAAAAGAACGTCCATGTGGGAGCTTTTTTCAGTACTTTTGTTGACAGTGCATCCTGT
1 TACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
*
90753041 TTGAAGCGTTTTTGACACTATATTTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAAAT
66 TTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAAAT
90753102 TACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
1 TACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
* * *
90753167 TTGAAGCATTTTTGACACTATTTTTTCAGAAACATCTTCTTAAAATTATTTTTTCAGAAAT
66 TTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAAAT
* *
90753228 TACTGTAGAAAAA-AAGCATCAACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
1 TACTGTAGAAAAAGAA-CATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
* * * *
90753292 CTTGAAGCGTTTTTGGCACTAGTTGTTCAGAAACATCTTTTCAAAATTATTTTT
65 CTTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTT
90753346 CAGATACGTC
Statistics
Matches: 228, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
125 2 0.01
126 226 0.99
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (126 bp):
TACTGTAGAAAAAGAACATCCATGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
TTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAAATTATTTTTTCAAAAAT
Found at i:90753347 original size:27 final size:28
Alignment explanation
Indices: 90753317--90753380 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
90753307 GCACTAGTTG
*
90753317 TTCAGAAACATCTTTTCAAAATTA-TTT
1 TTCAGAAACATCTTCTCAAAATTATTTT
* * * *
90753344 TTCAGATACGTCTTCTCTAATTTATTTT
1 TTCAGAAACATCTTCTCAAAATTATTTT
90753372 TTCAGAAAC
1 TTCAGAAAC
90753381 TACTATAGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.45
Consensus pattern (28 bp):
TTCAGAAACATCTTCTCAAAATTATTTT
Found at i:90758601 original size:6 final size:6
Alignment explanation
Indices: 90758590--90758617 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
90758580 CCAAAAATAG
90758590 TATAAA TATAAA TATAAA TATAAA TATA
1 TATAAA TATAAA TATAAA TATAAA TATA
90758618 TTTTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TATAAA
Found at i:90760510 original size:19 final size:21
Alignment explanation
Indices: 90760470--90760510 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
90760460 ACAATGTCCA
90760470 AAATAGTAGCAACATGATAGTG
1 AAATAGTAGCAACA-GATAGTG
90760492 AAATAGTAGCAA-A-ATAGTG
1 AAATAGTAGCAACAGATAGTG
90760511 GGAAAACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.49, C:0.07, G:0.22, T:0.22
Consensus pattern (21 bp):
AAATAGTAGCAACAGATAGTG
Found at i:90761822 original size:40 final size:40
Alignment explanation
Indices: 90761767--90761847 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
90761757 TTGGTGACTG
90761767 TATGCTACTTGGTTTTCTTCTTGATTTCACTGCAAAATTA
1 TATGCTACTTGGTTTTCTTCTTGATTTCACTGCAAAATTA
90761807 TATGCTACTTGGTTTTCTTCTTGATTTCACTGCAAAATTA
1 TATGCTACTTGGTTTTCTTCTTGATTTCACTGCAAAATTA
90761847 T
1 T
90761848 GTGGTTCATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.48
Consensus pattern (40 bp):
TATGCTACTTGGTTTTCTTCTTGATTTCACTGCAAAATTA
Found at i:90781854 original size:30 final size:30
Alignment explanation
Indices: 90781813--90781881 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
90781803 CACGGGCAGA
*
90781813 GACACGGCCATGTGTCTCAGCCATGTAAAG
1 GACATGGCCATGTGTCTCAGCCATGTAAAG
* *
90781843 GACATGGCCATGTGTCTCAGCCGTGTGAAG
1 GACATGGCCATGTGTCTCAGCCATGTAAAG
90781873 GACATGGCC
1 GACATGGCC
90781882 TAGCACTCGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.20
Consensus pattern (30 bp):
GACATGGCCATGTGTCTCAGCCATGTAAAG
Found at i:90789179 original size:28 final size:28
Alignment explanation
Indices: 90789139--90789204 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
90789129 TAGATGTCTA
*
90789139 TATACCCCTATGTATGCAAAATTACCAT
1 TATACCCCTATGTATGCAAAATGACCAT
*
90789167 TATACCCCTATGTATGCAAAATGACCTT
1 TATACCCCTATGTATGCAAAATGACCAT
90789195 TATACCCCTA
1 TATACCCCTA
90789205 GGGTTAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
TATACCCCTATGTATGCAAAATGACCAT
Found at i:90789367 original size:27 final size:27
Alignment explanation
Indices: 90789309--90789398 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
90789299 AGGAAGCGTC
90789309 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
90789337 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
90789364 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
90789393 CTGGTG
1 CTGGTG
90789399 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:90789417 original size:55 final size:56
Alignment explanation
Indices: 90789309--90789423 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
90789299 AGGAAGCGTC
* *
90789309 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
90789364 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
90789420 CTGG
1 CTGG
90789424 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:90790408 original size:15 final size:16
Alignment explanation
Indices: 90790385--90790425 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
90790375 TGGAATTGGG
*
90790385 TTTACAAAACAAAG-T
1 TTTAAAAAACAAAGTT
*
90790400 TTTAAAAAAAAAAGTT
1 TTTAAAAAACAAAGTT
90790416 TTTAAAAAAC
1 TTTAAAAAAC
90790426 TCTGTTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (16 bp):
TTTAAAAAACAAAGTT
Found at i:90797044 original size:28 final size:28
Alignment explanation
Indices: 90797004--90797071 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
90796994 TAGATGTGCT
*
90797004 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
90797032 ATTATACCCCTATGTATGCAAAATGAGC
1 ATTATACCCCTATGTATGCAAAATGACC
*
90797060 TTTATACCCCTA
1 ATTATACCCCTA
90797072 GGGTTAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:90797235 original size:27 final size:27
Alignment explanation
Indices: 90797177--90797266 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
90797167 AGGAAGCGTC
90797177 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
90797205 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
90797232 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
90797261 CTGGTG
1 CTGGTG
90797267 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:90797285 original size:55 final size:56
Alignment explanation
Indices: 90797177--90797291 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
90797167 AGGAAGCGTC
* *
90797177 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
90797232 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
90797288 CTGG
1 CTGG
90797292 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:90810808 original size:14 final size:14
Alignment explanation
Indices: 90810789--90810815 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90810779 TATCAAGACA
90810789 ATAATTAAGAACAC
1 ATAATTAAGAACAC
90810803 ATAATTAAGAACA
1 ATAATTAAGAACA
90810816 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:90813837 original size:23 final size:22
Alignment explanation
Indices: 90813807--90813850 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
90813797 AAAAGAGTGG
90813807 AAATTGAG-TTAGAAGTTTAATA
1 AAATTGAGATTA-AAGTTTAATA
*
90813829 AAATATGAGATTAAATTTTAAT
1 AAAT-TGAGATTAAAGTTTAAT
90813851 GAGTCTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 12 0.63
24 3 0.16
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (22 bp):
AAATTGAGATTAAAGTTTAATA
Found at i:90825209 original size:31 final size:31
Alignment explanation
Indices: 90825164--90825242 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
90825154 TTTAACGGTT
*
90825164 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
90825195 ACTGGGCCGCAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
90825226 ATTGGGTCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
90825243 ACTGTAAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:90825506 original size:26 final size:26
Alignment explanation
Indices: 90825448--90825532 Score: 140
Period size: 26 Copynumber: 3.3 Consensus size: 26
90825438 CTGGAGGCCT
90825448 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
90825472 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
90825498 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
90825524 AGCCCTTTT
1 AGCCCTTTT
90825533 GCACTTCCTC
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
23 5 0.09
24 7 0.12
25 10 0.17
26 36 0.62
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:90826361 original size:27 final size:27
Alignment explanation
Indices: 90826331--90826435 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 27
90826321 GGGCACATTC
*
90826331 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
90826358 GTCACTTTACCCTACAGGGG-ATTTACG
1 GTCATTTTACCCTACAGGGGTA-TTACG
90826385 GTC-TCTTTACCCTACAGGGGCT-TTACG
1 GTCAT-TTTACCCTACAGGGG-TATTACG
* *
90826412 GTCTTTTTA-CCTAATAGGGGTATT
1 GTCATTTTACCCT-ACAGGGGTATT
90826436 TTAGTCATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
26 5 0.07
27 61 0.91
28 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:90826562 original size:27 final size:27
Alignment explanation
Indices: 90826549--90826795 Score: 221
Period size: 27 Copynumber: 9.2 Consensus size: 27
90826539 TGTAAATTTG
90826549 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
* **
90826576 GGGTATTTTGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATTGA
*
90826602 GTGGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTGGTAATTTTACAAATTGA
90826629 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATTGA
* * ***
90826657 GGGTATTTCGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA
*** * *
90826684 GGGTATTTTAACAATTTTACAGACT-A
1 GGGTATTTTGGTAATTTTACAAATTGA
** *
90826710 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAATTGA
** ***
90826737 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA
* ** *
90826764 GGGTATTTTAGTAATTTTGTAAACTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
90826791 GGGTA
1 GGGTA
90826796 AAACAGTAAT
Statistics
Matches: 184, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.12
27 160 0.87
28 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:90826581 original size:54 final size:51
Alignment explanation
Indices: 90826521--90826754 Score: 191
Period size: 54 Copynumber: 4.4 Consensus size: 51
90826511 TAGAAAGTCA
* *
90826521 AGGGTATTTCT-GTAACTTTGTAAATTTGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTT-TGGTAA-TTT-TAAAATTGGGGTATTTTGGTAATTTTACAAACT
* ** *
90826574 GAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTTGGTAATTTTA-AAA-TTGGGGTATTTTGGTAATTTTACAAACT
* * *
90826628 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAACCA
1 A-GGGTATTTTGGTAATTTTA-AAATTG-GGGTATTTTGGTAATTTTACAAA-CT
*** * * * * * *
90826683 AGGGTATTTTAACAATTTTACAGACTAGGGTATTTTGGTAATTTTACTGATCG
1 AGGGTATTTTGGTAATTTTA-AAATTGGGGTATTTTGGTAATTTTAC-AAACT
90826736 AGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
90826755 GTAAACCAAG
Statistics
Matches: 146, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 43 0.29
54 100 0.68
55 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (51 bp):
AGGGTATTTTGGTAATTTTAAAATTGGGGTATTTTGGTAATTTTACAAACT
Found at i:90826658 original size:81 final size:81
Alignment explanation
Indices: 90826548--90826781 Score: 337
Period size: 81 Copynumber: 2.9 Consensus size: 81
90826538 TTGTAAATTT
*
90826548 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACC-AGTGGTATTTT
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAG-GGTATTTT
*
90826612 GGTAATTTTACAAACTA
65 AGTAATTTTACAAACTA
* *
90826629 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAACCAAGGGTATTTTA
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
** *
90826694 ACAATTTTACAGACTA
66 GTAATTTTACAAACTA
** * **
90826710 -GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTA
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
90826774 GTAATTTT
66 GTAATTTT
90826782 GTAAACTGAG
Statistics
Matches: 136, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 63 0.46
81 71 0.52
82 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
GTAATTTTACAAACTA
Found at i:90826793 original size:54 final size:53
Alignment explanation
Indices: 90826549--90826795 Score: 255
Period size: 54 Copynumber: 4.6 Consensus size: 53
90826539 TGTAAATTTG
* *
90826549 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAACCA
**
90826602 GTGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACTGA-GGGTATTTTGGTAATTTTACAAA-CCA
* * ** *** * *
90826657 GGGTATTTCGATAATTTTACAAACCAAGGGTATTTTAACAATTTTACAGACTA
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAACCA
** **
90826710 GGGTATTTTGGTAATTTTACTGA-TCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACT-GAGGGTATTTTGGTAATTTTACAAACC-A
* **
90826764 GGGTATTTTAGTAATTTTGTAAACTGAGGGTA
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTA
90826796 AAACAGTAAT
Statistics
Matches: 156, Mismatches: 31, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
53 41 0.26
54 111 0.71
55 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAACCA
Found at i:90826995 original size:27 final size:27
Alignment explanation
Indices: 90826789--90826984 Score: 347
Period size: 27 Copynumber: 7.3 Consensus size: 27
90826779 TTTGTAAACT
* *
90826789 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
90826816 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
90826843 GAGGGTAAAACGATAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
90826870 GAGGGTAAAACTGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
90826897 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
90826924 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
90826951 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
90826978 GAGGGTA
1 GAGGGTA
90826985 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 163 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTATAAATC
Found at i:90832853 original size:42 final size:42
Alignment explanation
Indices: 90832794--90832940 Score: 154
Period size: 42 Copynumber: 3.5 Consensus size: 42
90832784 TTAGGAATAA
* *
90832794 ACCATATCTGGGATATGGCATCATTATGAGACTTCGTGTAAG
1 ACCATATCTGGGATATGGCATCAATATGAGACTTCATGTAAG
* *
90832836 ACCATATTTGGGATATGGCATCAATATGAGATTTCATGTAAG
1 ACCATATCTGGGATATGGCATCAATATGAGACTTCATGTAAG
* * * * **
90832878 ACTAT-TGCT-AGCTATTGGCATCAAAATGAGACCCCATGTAAG
1 ACCATAT-CTGGGATA-TGGCATCAATATGAGACTTCATGTAAG
* *
90832920 AACATATCTAGGATATGGCAT
1 ACCATATCTGGGATATGGCAT
90832941 TGGTGTGGTA
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 4 0.05
42 77 0.91
43 4 0.05
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (42 bp):
ACCATATCTGGGATATGGCATCAATATGAGACTTCATGTAAG
Found at i:90852715 original size:17 final size:16
Alignment explanation
Indices: 90852693--90852735 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
90852683 TTTAGTCCCT
90852693 AAATCACAAAATACACA
1 AAATCACAAAAT-CACA
90852710 AAATCACAAAATCACA
1 AAATCACAAAATCACA
90852726 AAATACACAA
1 AAAT-CACAA
90852736 GCCTAGCTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (16 bp):
AAATCACAAAATCACA
Found at i:90852717 original size:8 final size:8
Alignment explanation
Indices: 90852693--90852735 Score: 68
Period size: 8 Copynumber: 5.1 Consensus size: 8
90852683 TTTAGTCCCT
90852693 AAATCACA
1 AAATCACA
90852701 AAATACACA
1 AAAT-CACA
90852710 AAATCACA
1 AAATCACA
90852718 AAATCACA
1 AAATCACA
90852726 AAATACACA
1 AAAT-CACA
90852735 A
1 A
90852736 GCCTAGCTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
8 20 0.61
9 13 0.39
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATCACA
Found at i:90860120 original size:93 final size:93
Alignment explanation
Indices: 90859993--90860165 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
90859983 TTATCTTCGA
* * *** *
90859993 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTTGTTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATAGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
90860058 TCAACCATGGTCTTATTCATTTCTCAGT
66 TCAACCATGGTCTTATTCATTTCTCAGT
* *
90860086 CATGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATAGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
90860151 TCAACCATGGTCTTA
66 TCAACCATGGTCTTA
90860166 CACATTTCAT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (93 bp):
CATGATGCCATAGTATCTTTCAACCATAGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTATTCATTTCTCAGT
Found at i:90860167 original size:46 final size:46
Alignment explanation
Indices: 90859993--90860172 Score: 245
Period size: 46 Copynumber: 3.9 Consensus size: 46
90859983 TTATCTTCGA
* * * *** *
90859993 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTTGTTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
**
90860039 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCTCAGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCT-A-T
*
90860086 CATGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTTCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
90860132 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
90860173 CATTTTAGAA
Statistics
Matches: 120, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
45 5 0.04
46 73 0.61
47 37 0.31
48 5 0.04
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:90862354 original size:11 final size:11
Alignment explanation
Indices: 90862338--90862385 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
90862328 TACTTAATAA
90862338 AATAATAAAAT
1 AATAATAAAAT
90862349 AATAAT-AAAT
1 AATAATAAAAT
* *
90862359 ATATTATTAAAT
1 A-ATAATAAAAT
*
90862371 ATTAATAAAAT
1 AATAATAAAAT
90862382 AATA
1 AATA
90862386 TTTTTAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
10 5 0.17
11 20 0.67
12 5 0.17
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:90862376 original size:22 final size:21
Alignment explanation
Indices: 90862332--90862387 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
90862322 TATATATACT
90862332 TAATAAAATAATA--AAATAA
1 TAATAAAATAATATTAAATAA
* *
90862351 TAATAAATATATTATTAAATAT
1 TAATAAA-ATAATATTAAATAA
90862373 TAATAAAATAATATT
1 TAATAAAATAATATT
90862388 TTTAATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 7 0.23
20 5 0.16
21 7 0.23
22 12 0.39
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TAATAAAATAATATTAAATAA
Found at i:90863955 original size:22 final size:23
Alignment explanation
Indices: 90863928--90864009 Score: 80
Period size: 22 Copynumber: 3.6 Consensus size: 23
90863918 CATTATTAAA
90863928 CAGAGAGCACTAAAGTGCTATA-
1 CAGAGAGCACTAAAGTGCTATAT
90863950 CAGAGAGCAC-AAATGTGCTA-AT
1 CAGAGAGCACTAAA-GTGCTATAT
* * **
90863972 CGGAGAGCATTAGCGTGCTAATAAT
1 CAGAGAGCACTAAAGTGCT-AT-AT
90863997 CAGAGAGCACTAA
1 CAGAGAGCACTAA
90864010 CGTGTTAAGG
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 4 0.09
22 29 0.62
23 2 0.04
25 12 0.26
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.18
Consensus pattern (23 bp):
CAGAGAGCACTAAAGTGCTATAT
Found at i:90865341 original size:46 final size:46
Alignment explanation
Indices: 90865283--90865507 Score: 319
Period size: 46 Copynumber: 4.9 Consensus size: 46
90865273 TTATCTTCGA
* * * *
90865283 CATGATGCCATGGTATCTTTCAACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
** * **
90865329 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTAT
90865376 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
90865422 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TAT
* *
90865468 CAT-TTGTCATGGTATCTTTCAACCATGGTCTTATACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
90865508 CATTTCAGAA
Statistics
Matches: 164, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
45 36 0.22
46 86 0.52
47 42 0.26
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTAT
Found at i:90865447 original size:93 final size:92
Alignment explanation
Indices: 90865283--90865507 Score: 335
Period size: 93 Copynumber: 2.4 Consensus size: 92
90865273 TTATCTTCGA
* * * *
90865283 CATGATGCCATGGTATCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
** * *
90865348 TCAACCATGGTCTTATTCATTTCCCCGT
66 TCAACCATGGTCTTACACATTT-CACAT
90865376 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
*
90865441 TCAACCATGGTCTTACACATTTCATAT
66 TCAACCATGGTCTTACACATTTCACAT
* *
90865468 CAT-TTGTCATGGTATCTTTCAACCATGGTCTTATACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
90865508 CATTTCAGAA
Statistics
Matches: 121, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
91 35 0.29
92 5 0.04
93 81 0.67
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (92 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCACAT
Found at i:90865509 original size:21 final size:21
Alignment explanation
Indices: 90865439--90865509 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
90865429 CCATGGTATC
*
90865439 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTATACA
* *
90865460 TTTCATATCATTTGTCATGGTAT-C-
1 TTTCA-ACCA-TGGTC-T--TATACA
90865484 TTTCAACCATGGTCTTATACA
1 TTTCAACCATGGTCTTATACA
90865505 TTTCA
1 TTTCA
90865510 TTTCAGAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 11 0.29
22 7 0.18
23 7 0.18
24 6 0.16
25 1 0.03
26 2 0.05
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (21 bp):
TTTCAACCATGGTCTTATACA
Found at i:90867723 original size:30 final size:30
Alignment explanation
Indices: 90867689--90867752 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
90867679 ATAATAAAAT
90867689 AATAATAAATATCTT-ATTAAAT-ATTAATAA
1 AATAAT-AATATCTTAATTAAATAATT-ATAA
* *
90867719 AATAATAATTTTTTAATTAAATAATTATAA
1 AATAATAATATCTTAATTAAATAATTATAA
90867749 AATA
1 AATA
90867753 TCATCAACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 6 0.20
30 21 0.70
31 3 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATAATATCTTAATTAAATAATTATAA
Found at i:90877739 original size:22 final size:22
Alignment explanation
Indices: 90877714--90877756 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
90877704 GCACCATTTG
90877714 CATGGAATAGTTCATGGACCCT
1 CATGGAATAGTTCATGGACCCT
90877736 CATGGAATAGTTCATGGACCC
1 CATGGAATAGTTCATGGACCC
90877757 CCTTCCTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (22 bp):
CATGGAATAGTTCATGGACCCT
Found at i:90878750 original size:20 final size:19
Alignment explanation
Indices: 90878722--90878762 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
90878712 GTATTACATG
90878722 CACACACGATTCCACTTAAT
1 CACACACGATTCCAC-TAAT
* *
90878742 CACATACGATTTCACTAAT
1 CACACACGATTCCACTAAT
90878761 CA
1 CA
90878763 GATAAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.37, C:0.32, G:0.05, T:0.27
Consensus pattern (19 bp):
CACACACGATTCCACTAAT
Found at i:90880632 original size:131 final size:131
Alignment explanation
Indices: 90880430--90880768 Score: 353
Period size: 131 Copynumber: 2.6 Consensus size: 131
90880420 TGAAAAAGCG
* * ** * *
90880430 CAACCCAGCACGATAGGGC-TCGATTCTCAAATCGCCAAACATCGAACGTCGCCTACGTTCTGAA
1 CAACCCAGCACGATAGGGCAT-GATTCCCAAATTGCCAAACATCGAATATCGCCTTCGTT-TTAA
* * ** *
90880494 A-GATTTTTAATAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAA
64 AGGATTTTTAATAAACACGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAGCAAACAAGAAA
90880558 TCA
129 TCA
* * *
90880561 CAACCCAGCACGATAGGGCATGATTCCCAAATTGTCAAACACCGAATATTGCCTTCGTTTTAAAG
1 CAACCCAGCACGATAGGGCATGATTCCCAAATTGCCAAACATCGAATATCGCCTTCGTTTTAAAG
* * ** * *
90880626 GATTTTTAGA-AGACACGGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCAAACAAGAAAT
66 GATTTTTA-ATAAACACGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAGCAAACAAGAAAT
**
90880690 TG
130 CA
* * * * *
90880692 CAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAGA-ATCGAATATCACCTTCGTTTTAA
1 CAACCCAGCACGATAGGGCATGATTCC-CAAATTGCCAA-ACATCGAATATCGCCTTCGTTTTAA
*
90880756 AGAATTTTTAATA
64 AGGATTTTTAATA
90880769 GTTGTGAAAC
Statistics
Matches: 171, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
130 4 0.02
131 125 0.73
132 41 0.24
133 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.25
Consensus pattern (131 bp):
CAACCCAGCACGATAGGGCATGATTCCCAAATTGCCAAACATCGAATATCGCCTTCGTTTTAAAG
GATTTTTAATAAACACGAGTGAAAACCTAAAGGAACATTCGATTACTTTGAGCAAACAAGAAATC
A
Found at i:90884155 original size:21 final size:21
Alignment explanation
Indices: 90884131--90884170 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
90884121 AAGCTCAAAT
*
90884131 TAAATTTAA-TTAGAAAATATA
1 TAAAATTAATTTA-AAAATATA
90884152 TAAAATTAATTTAAAAATA
1 TAAAATTAATTTAAAAATA
90884171 AATTTTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
TAAAATTAATTTAAAAATATA
Found at i:90886106 original size:28 final size:27
Alignment explanation
Indices: 90886071--90886134 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 27
90886061 TTTCAAGTTT
90886071 TTTTATTTTTAA-TTAATAAATATATTA
1 TTTTATTTTTAATTTAATAAATA-ATTA
*
90886098 TTTTCATTTTTAATTTTAATTAATAATTA
1 TTTT-ATTTTTAA-TTTAATAAATAATTA
90886127 TTTTATTT
1 TTTTATTT
90886135 ATAAAATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
27 4 0.12
28 12 0.36
29 8 0.24
30 9 0.27
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTTATTTTTAATTTAATAAATAATTA
Found at i:90886108 original size:34 final size:34
Alignment explanation
Indices: 90886070--90886134 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
90886060 GTTTCAAGTT
*
90886070 TTTTTATTTTTAATTAATAAATATATTATTTTCA
1 TTTTTAATTTTAATTAATAAATATATTATTTTCA
* *
90886104 TTTTTAATTTTAATTAATAATTATTTTATTT
1 TTTTTAATTTTAATTAATAAATATATTATTT
90886135 ATAAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (34 bp):
TTTTTAATTTTAATTAATAAATATATTATTTTCA
Found at i:90886144 original size:28 final size:29
Alignment explanation
Indices: 90886081--90886151 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
90886071 TTTTATTTTT
* *
90886081 AATTAATAAATATATTATTTTCATTTTTAA
1 AATTAATTAATA-ATTATTTTCATTTATAA
**
90886111 TTTTAATTAATAATTATTTT-ATTTATAA
1 AATTAATTAATAATTATTTTCATTTATAA
*
90886139 AATTAAATAATAA
1 AATTAATTAATAA
90886152 ATATGAAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 17 0.50
29 8 0.24
30 9 0.26
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (29 bp):
AATTAATTAATAATTATTTTCATTTATAA
Found at i:90886550 original size:39 final size:42
Alignment explanation
Indices: 90886501--90886595 Score: 115
Period size: 45 Copynumber: 2.3 Consensus size: 42
90886491 GTGAATATGA
* *
90886501 TATTTCAAATA-T-T-TTTATATGTGAAATATTTCAATTAGT
1 TATTTCAAATATTATGTTTATATGTGAAATATTTCAAATAAT
90886540 TATTTCAAATATTATTATGTTTATATGTGAAATATTTCAAATAAT
1 TATTTC-AA-A-TATTATGTTTATATGTGAAATATTTCAAATAAT
*
90886585 TCTTTCAAATA
1 TATTTCAAATA
90886596 CACATACAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
39 6 0.13
40 2 0.04
41 1 0.02
42 4 0.09
43 2 0.04
44 3 0.06
45 29 0.62
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (42 bp):
TATTTCAAATATTATGTTTATATGTGAAATATTTCAAATAAT
Found at i:90889469 original size:44 final size:44
Alignment explanation
Indices: 90889406--90889538 Score: 239
Period size: 44 Copynumber: 3.0 Consensus size: 44
90889396 TTTGATCTTC
90889406 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
1 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
*
90889450 CAAATTAACACACAAGTAATATAGAGAAGATGATTCTCTCTTTT
1 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
* *
90889494 CAAATTAACACACAAGTAATACAGAAAAGATGACTCTCTCTTTT
1 CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
90889538 C
1 C
90889539 TAAAGATGGG
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 85 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (44 bp):
CAAATTAACACACAAGTAATATAGAGAAGATGACTCTCTCTTTT
Found at i:90899620 original size:26 final size:26
Alignment explanation
Indices: 90899562--90899636 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
90899552 GGCAAGCCTT
*
90899562 ATCGGGAAGCTC-CGAAGAGCTATTA
1 ATCGAGAAGCTCACGAAGAGCTATTA
* *
90899587 ATCAAGAAGCTCACAAAGAGC-ATTTA
1 ATCGAGAAGCTCACGAAGAGCTA-TTA
* *
90899613 ATCGAGAAACTCACGAAGAACTAT
1 ATCGAGAAGCTCACGAAGAGCTAT
90899637 ATATCGGGAC
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
25 11 0.28
26 28 0.70
27 1 0.03
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (26 bp):
ATCGAGAAGCTCACGAAGAGCTATTA
Found at i:90900740 original size:18 final size:18
Alignment explanation
Indices: 90900717--90900758 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
90900707 TTTCCATAGA
90900717 TGACTAAGCATTCTCATT
1 TGACTAAGCATTCTCATT
*
90900735 TGACTAAGCATTCTTATT
1 TGACTAAGCATTCTCATT
90900753 TG-CTAA
1 TGACTAA
90900759 CTCCTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (18 bp):
TGACTAAGCATTCTCATT
Found at i:90903851 original size:29 final size:29
Alignment explanation
Indices: 90903809--90903867 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
90903799 GATATTAGTG
90903809 TTGTTCCCAAAACAAGATCTATAGAAAAT
1 TTGTTCCCAAAACAAGATCTATAGAAAAT
* *
90903838 TTGTTCTCGAAACAAGATCTATAGAAAAT
1 TTGTTCCCAAAACAAGATCTATAGAAAAT
90903867 T
1 T
90903868 CCACTTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (29 bp):
TTGTTCCCAAAACAAGATCTATAGAAAAT
Found at i:90919281 original size:25 final size:25
Alignment explanation
Indices: 90919251--90919355 Score: 81
Period size: 25 Copynumber: 4.2 Consensus size: 25
90919241 GCCATCTCTC
90919251 GAGCCATATAATGGGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATGT
* *
90919276 GAGCCATATAACT-GGAAGCTTATCT
1 GAGCCATATAA-TGGGAAGCTCATGT
** ** **
90919301 GAGCTGTATAGCGGGAAGCTCATAA
1 GAGCCATATAATGGGAAGCTCATGT
* *
90919326 GAGCCATAT--TCAGGAAGCTCGTGT
1 GAGCCATATAAT-GGGAAGCTCATGT
90919350 GAGCCA
1 GAGCCA
90919356 ATAGCGGGTA
Statistics
Matches: 61, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
24 15 0.25
25 45 0.74
26 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATGT
Found at i:90924788 original size:46 final size:46
Alignment explanation
Indices: 90924721--90924846 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
90924711 AACCCGCCCC
* * * *
90924721 TAAGTGAACTTGGACTCAACTCAATGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
90924767 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
90924813 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
90924847 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:90928026 original size:21 final size:21
Alignment explanation
Indices: 90927996--90928068 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
90927986 ACCAAATGTG
*
90927996 TAAAAGAATTTATAATTATAA
1 TAAAATAATTTATAATTATAA
90928017 TAAAATAATTATATAA-TATATA
1 TAAAATAATT-TATAATTATA-A
* *
90928039 TAAATATAAATTTAGAATAAT-A
1 TAAA-AT-AATTTATAATTATAA
90928061 TAAAATAA
1 TAAAATAA
90928069 GTAATTAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
20 2 0.05
21 15 0.34
22 15 0.34
23 6 0.14
24 6 0.14
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (21 bp):
TAAAATAATTTATAATTATAA
Found at i:90928250 original size:18 final size:17
Alignment explanation
Indices: 90928210--90928280 Score: 60
Period size: 16 Copynumber: 4.2 Consensus size: 17
90928200 ACCTTTAATG
* *
90928210 ATAATAATATAT-AGAT
1 ATAAAAATATATAATAT
90928226 A-AAAAATATATAATAGT
1 ATAAAAATATATAATA-T
*
90928243 ATAAAAATAACATAATAT
1 ATAAAAAT-ATATAATAT
90928261 A-AAATAAT-TATAATAT
1 ATAAA-AATATATAATAT
90928277 ATAA
1 ATAA
90928281 TATGAAAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
15 9 0.20
16 11 0.24
17 7 0.16
18 11 0.24
19 7 0.16
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAAAAATATATAATAT
Found at i:90928332 original size:11 final size:12
Alignment explanation
Indices: 90928302--90928342 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
90928292 ATATGTAAAA
*
90928302 ATAATATATAAT
1 ATAATAAATAAT
90928314 ATATATAAATAAT
1 ATA-ATAAATAAT
90928327 -TAATAAAT-AT
1 ATAATAAATAAT
90928337 ATAATA
1 ATAATA
90928343 CAAGTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
10 2 0.08
11 11 0.42
12 5 0.19
13 8 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:90928350 original size:28 final size:28
Alignment explanation
Indices: 90928304--90928358 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
90928294 ATGTAAAAAT
*
90928304 AATATATAATATATATAAATAAT-TAATA
1 AATATATAATACATATAAA-AATATAATA
90928332 AATATATAATACA-AGTAAAAATATAAT
1 AATATATAATACATA-TAAAAATATAAT
90928359 GTAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (28 bp):
AATATATAATACATATAAAAATATAATA
Found at i:90928449 original size:22 final size:20
Alignment explanation
Indices: 90928387--90928503 Score: 64
Period size: 21 Copynumber: 5.8 Consensus size: 20
90928377 GTGAAAAGTA
90928387 ATATATAATGAATAATAATAAT
1 ATATATAAT-AATAATAA-AAT
* * *
90928409 ATAAATAATAAAAAAAAAAT
1 ATATATAATAATAATAAAAT
90928429 ATATATATATAATATATAAAA-
1 ATATATA-ATAATA-ATAAAAT
*** * *
90928450 ATA-AGGTTAAAAATAAAAC
1 ATATATAATAATAATAAAAT
90928469 A-A-ATAATAATAA-AAAATT
1 ATATATAATAATAATAAAA-T
*
90928487 ATATATTTATAATAATA
1 ATATA-TAATAATAATA
90928504 GGGTTAGATT
Statistics
Matches: 71, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
17 4 0.06
18 14 0.20
19 6 0.08
20 11 0.15
21 22 0.31
22 14 0.20
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (20 bp):
ATATATAATAATAATAAAAT
Found at i:90930409 original size:206 final size:206
Alignment explanation
Indices: 90930050--90930809 Score: 1094
Period size: 206 Copynumber: 3.7 Consensus size: 206
90930040 AAATTTGCTT
* * *
90930050 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTCCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * * *
90930115 GTGAAAACTAAATCAGCTATGTCTTCGATTTACTCCTTGTAAGCACAAGGATACCAAACCATCCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
90930180 AGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTACTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
* * *
90930245 GAGACGCTAAA
196 GAGATGCCAGA
* * * * * *
90930256 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATTTTAGACTTGCTTCAATGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* *
90930321 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCTTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
90930386 GGATCTACTTCAGTATAATCATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCTGTC-AA-AGT
131 GGATCTACTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATA-T
90930449 GGAGATGCCAGA
195 GGAGATGCCAGA
* * * *
90930461 TTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATATTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
90930526 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGTACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * * *
90930591 GGATCTGCTTCAATGA-AATCATCTGAAGGTGAGATTTGCTATGTGTCTGCCCTCCATCGAATAT
131 GGATCTACTTCAGT-ATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATAT
90930655 GGAGATGCCAGA
195 GGAGATGCCAGA
* * *
90930667 CTTTGATTTGTTCTCTGATAATACAGAGATGGCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * *
90930732 ATGAAAGCCAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGGATGCCAAACCATATT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
90930797 GGATCTACTTCAG
131 GGATCTACTTCAG
90930810 CCAGATCTGC
Statistics
Matches: 488, Mismatches: 62, Indels: 8
0.87 0.11 0.01
Matches are distributed among these distances:
204 1 0.00
205 176 0.36
206 310 0.64
207 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGATGCCAGA
Found at i:90942663 original size:21 final size:21
Alignment explanation
Indices: 90942638--90942678 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
90942628 TATAATATAT
90942638 AATAACAAAAATTTATAAAAG
1 AATAACAAAAATTTATAAAAG
* **
90942659 AATAATAATTATTTATAAAA
1 AATAACAAAAATTTATAAAA
90942679 TAAAAAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
AATAACAAAAATTTATAAAAG
Found at i:90942692 original size:21 final size:21
Alignment explanation
Indices: 90942648--90942692 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
90942638 AATAACAAAA
*
90942648 ATTTATAAAAGAATAATAATT
1 ATTTATAAAAGAATAAAAATT
*
90942669 ATTTATAAAATAA-AAAAATAT
1 ATTTATAAAAGAATAAAAAT-T
90942690 ATT
1 ATT
90942693 GGTTTAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
ATTTATAAAAGAATAAAAATT
Found at i:90943063 original size:11 final size:12
Alignment explanation
Indices: 90943033--90943189 Score: 53
Period size: 11 Copynumber: 12.9 Consensus size: 12
90943023 ATATGTAAAA
*
90943033 ATAATATATAAT
1 ATAATAAATAAT
90943045 ATATATAAATAAT
1 ATA-ATAAATAAT
90943058 -TAATAAAT-AT
1 ATAATAAATAAT
90943068 ATAATACAAGTAA-
1 ATAATA-AA-TAAT
* *
90943081 AAAATATAACGTAAA
1 ATAATA-AA--TAAT
**
90943096 ATAATAATATTTT
1 ATAATAA-ATAAT
* *
90943109 GTGAA-AAGTAAT
1 AT-AATAAATAAT
90943121 AT-AT-AATGAAT
1 ATAATAAAT-AAT
90943132 AATAATAATATAA-
1 -ATAATAA-ATAAT
*
90943145 ATAATATATAAT
1 ATAATAAATAAT
* *
90943157 AAAAT-AATTAT
1 ATAATAAATAAT
*
90943168 ATAATATATAAT
1 ATAATAAATAAT
90943180 ATAA-AAATAA
1 ATAATAAATAA
90943190 GGTTAAAAAT
Statistics
Matches: 107, Mismatches: 21, Indels: 35
0.66 0.13 0.21
Matches are distributed among these distances:
10 5 0.05
11 31 0.29
12 30 0.28
13 22 0.21
14 11 0.10
15 8 0.07
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:90943149 original size:12 final size:12
Alignment explanation
Indices: 90943132--90943235 Score: 58
Period size: 12 Copynumber: 8.6 Consensus size: 12
90943122 TATAATGAAT
90943132 AATAATAATATA
1 AATAATAATATA
90943144 AATAAT-ATATA
1 AATAATAATATA
*
90943155 ATAAAATAATTATA
1 A-ATAATAA-TATA
90943169 TAATATATAATATA
1 -AATA-ATAATATA
90943183 AA-AATAAGGT-TA
1 AATAATAA--TATA
* *
90943195 AA-AATAAAACA
1 AATAATAATATA
*
90943206 AATAATAA-AAA
1 AATAATAATATA
*
90943217 AATTAT-ATATA
1 AATAATAATATA
90943228 TAATAATA
1 -AATAATA
90943236 GGGTTAGATT
Statistics
Matches: 72, Mismatches: 8, Indels: 23
0.70 0.08 0.22
Matches are distributed among these distances:
10 1 0.01
11 22 0.31
12 30 0.42
13 4 0.06
14 10 0.14
15 5 0.07
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (12 bp):
AATAATAATATA
Found at i:90943150 original size:18 final size:18
Alignment explanation
Indices: 90943117--90943189 Score: 76
Period size: 19 Copynumber: 3.8 Consensus size: 18
90943107 TTGTGAAAAG
90943117 TAATATATAATGAATAATAA
1 TAATATA-AAT-AATAATAA
90943137 TAATATAAATAATATATAA
1 TAATATAAATAATA-ATAA
* *
90943156 TAAAATAATTATATAATATA
1 TAATATAAATA-ATAATA-A
90943176 TAATATAAA-AATAA
1 TAATATAAATAATAA
90943190 GGTTAAAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 8 0.17
19 20 0.43
20 18 0.39
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (18 bp):
TAATATAAATAATAATAA
Found at i:90943154 original size:29 final size:27
Alignment explanation
Indices: 90943117--90943189 Score: 84
Period size: 23 Copynumber: 2.8 Consensus size: 27
90943107 TTGTGAAAAG
90943117 TAATATATAATGAATAATAATAATATAAA
1 TAATATATAAT-AA-AATAATAATATAAA
90943146 TAATATATAATAAAATAAT--TAT--A
1 TAATATATAATAAAATAATAATATAAA
90943169 TAATATATAATATAAA-AATAA
1 TAATATATAATA-AAATAATAA
90943190 GGTTAAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
23 16 0.39
24 3 0.07
25 3 0.07
27 6 0.15
28 2 0.05
29 11 0.27
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (27 bp):
TAATATATAATAAAATAATAATATAAA
Found at i:90943157 original size:7 final size:7
Alignment explanation
Indices: 90943117--90943182 Score: 64
Period size: 7 Copynumber: 9.0 Consensus size: 7
90943107 TTGTGAAAAG
90943117 TAATATA
1 TAATATA
90943124 TAATGA-A
1 TAAT-ATA
90943131 TAATA-A
1 TAATATA
90943137 TAATATAAA
1 TAATAT--A
90943146 TAATATA
1 TAATATA
*
90943153 TAATAAAA
1 TAAT-ATA
90943161 TAATTATA
1 TAA-TATA
90943169 TAATATA
1 TAATATA
90943176 TAATATA
1 TAATATA
90943183 AAAATAAGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
6 7 0.14
7 25 0.49
8 11 0.22
9 8 0.16
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (7 bp):
TAATATA
Found at i:90944787 original size:16 final size:15
Alignment explanation
Indices: 90944758--90944797 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
90944748 CATGATTGAT
*
90944758 ATATATACATATATTC
1 ATATA-ACATATATAC
90944774 ATATAACATAATATAC
1 ATATAACAT-ATATAC
90944790 ATATAACA
1 ATATAACA
90944798 AAAGCACCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATAACATATATAC
Found at i:90947338 original size:18 final size:17
Alignment explanation
Indices: 90947310--90947343 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
90947300 CTTCTTCATC
90947310 ATTTCTCTTCTTTTTCG
1 ATTTCTCTTCTTTTTCG
90947327 ATTTCTTCTTCTTTTTC
1 ATTTC-TCTTCTTTTTC
90947344 TAAATTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.06, C:0.24, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTCTCTTCTTTTTCG
Found at i:90952998 original size:25 final size:24
Alignment explanation
Indices: 90952970--90953017 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
90952960 CTATTTTGGG
*
90952970 TTTTAAGTCCTATTATTTTTTTTTA
1 TTTT-AGTCCTATTATTTATTTTTA
* *
90952995 TTTTATTTCTATTATTTATTTTT
1 TTTTAGTCCTATTATTTATTTTT
90953018 GTCTAAAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTTAGTCCTATTATTTATTTTTA
Found at i:90957374 original size:3 final size:3
Alignment explanation
Indices: 90957366--90957400 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
90957356 ATAAAACAGA
90957366 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
90957401 TAATAATGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:90966953 original size:15 final size:15
Alignment explanation
Indices: 90966933--90966962 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90966923 TTTGCTTTTA
*
90966933 ATAAAATTTTATGTT
1 ATAAAATTGTATGTT
90966948 ATAAAATTGTATGTT
1 ATAAAATTGTATGTT
90966963 GTTTAATACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
ATAAAATTGTATGTT
Found at i:90969778 original size:17 final size:17
Alignment explanation
Indices: 90969756--90969790 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
90969746 GTTATGCACA
90969756 TAGGAATAGGATACTAC
1 TAGGAATAGGATACTAC
90969773 TAGGAATAGGATACTAC
1 TAGGAATAGGATACTAC
90969790 T
1 T
90969791 GGAGGCTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (17 bp):
TAGGAATAGGATACTAC
Found at i:90970027 original size:18 final size:18
Alignment explanation
Indices: 90970004--90970041 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
90969994 ATTTGACATA
90970004 GTTTGTTTAATAGCAGTT
1 GTTTGTTTAATAGCAGTT
*
90970022 GTTTGTTTAATAGTAGTT
1 GTTTGTTTAATAGCAGTT
90970040 GT
1 GT
90970042 GTTAGCATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.03, G:0.24, T:0.53
Consensus pattern (18 bp):
GTTTGTTTAATAGCAGTT
Found at i:90973167 original size:13 final size:13
Alignment explanation
Indices: 90973151--90973177 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
90973141 AAGTTTCATA
90973151 AAAAAAAAAGAAC
1 AAAAAAAAAGAAC
90973164 AAAAAAAAAGAAC
1 AAAAAAAAAGAAC
90973177 A
1 A
90973178 GCATACTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.07, G:0.07, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAC
Found at i:90982020 original size:49 final size:49
Alignment explanation
Indices: 90981961--90982148 Score: 277
Period size: 49 Copynumber: 3.8 Consensus size: 49
90981951 TGAGGTCACG
*
90981961 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
* * * *
90982010 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCGCA
* * *
90982060 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
* *
90982109 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
90982149 CTTCGGCTAC
Statistics
Matches: 123, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
49 80 0.65
50 43 0.35
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCA
Found at i:90982124 original size:99 final size:99
Alignment explanation
Indices: 90981953--90982134 Score: 328
Period size: 99 Copynumber: 1.8 Consensus size: 99
90981943 AGCTATTGTG
** *
90981953 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGAATGTGTAGT
90982018 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
*
90982052 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGAATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGAATGTGTAGT
90982117 ACTAAGTGCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
90982135 TGCGTACCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 79 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (99 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGAATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:90983848 original size:36 final size:36
Alignment explanation
Indices: 90983807--90983875 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
90983797 CAAGTAAGGA
** *
90983807 AGATGATGAAAATGTCTACGCTGATTAGGAAGGAAT
1 AGATGATGAAAATGGATACGATGATTAGGAAGGAAT
90983843 AGATGATGAAAATGGATACGATGATTAGGAAGG
1 AGATGATGAAAATGGATACGATGATTAGGAAGG
90983876 TATCTGCCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.41, C:0.06, G:0.30, T:0.23
Consensus pattern (36 bp):
AGATGATGAAAATGGATACGATGATTAGGAAGGAAT
Found at i:90987769 original size:25 final size:24
Alignment explanation
Indices: 90987741--90987788 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
90987731 CTATTTTGGG
*
90987741 TTTTAAGTCCTATTATTTTTTTTTA
1 TTTT-AGTCCTATTATTTATTTTTA
* *
90987766 TTTTATTTCTATTATTTATTTTT
1 TTTTAGTCCTATTATTTATTTTT
90987789 GTCTAAAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73
Consensus pattern (24 bp):
TTTTAGTCCTATTATTTATTTTTA
Found at i:90994908 original size:16 final size:15
Alignment explanation
Indices: 90994887--90994920 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
90994877 AATTTATTTC
*
90994887 ATAATTATTATTAAAA
1 ATAATTAATA-TAAAA
90994903 ATAATTAATATAAAA
1 ATAATTAATATAAAA
90994918 ATA
1 ATA
90994921 GAAGACTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAATTAATATAAAA
Found at i:90999004 original size:22 final size:23
Alignment explanation
Indices: 90998963--90999007 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
90998953 CGTTTTTAAA
90998963 TTTAATGTTAGAAAAATATTTTT
1 TTTAATGTTAGAAAAATATTTTT
* *
90998986 TTTAATGTT-TAAAATTATTTTT
1 TTTAATGTTAGAAAAATATTTTT
90999008 AACATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (23 bp):
TTTAATGTTAGAAAAATATTTTT
Found at i:90999710 original size:26 final size:26
Alignment explanation
Indices: 90999681--90999740 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
90999671 ACATTTTAAG
*
90999681 TAATTAATATAAATTA-TTTGTAAAAT
1 TAATT-ATATAAAATATTTTGTAAAAT
*
90999707 TAATTATATAAAATATTTTTTAAAAT
1 TAATTATATAAAATATTTTGTAAAAT
*
90999733 TAAATATA
1 TAATTATA
90999741 ATAATAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
TAATTATATAAAATATTTTGTAAAAT
Found at i:90999729 original size:90 final size:90
Alignment explanation
Indices: 90999539--90999725 Score: 254
Period size: 90 Copynumber: 2.1 Consensus size: 90
90999529 TATGATATTT
* **
90999539 AAATAATTTAATATAATGATACATGAAACATAAATCTTAAATGTATTTTAAAAAATTAATATAAA
1 AAATATTTTAATATAATGATACATGAAACATAAATCTTAAATACATTTTAAAAAATTAATATAAA
*
90999604 TTACCTGTAAAATTTATTATATATA
66 TTACCTGTAAAATTAATTATATATA
* * **
90999629 AAATATTTTAATATAATGATATATGAAATATAAAT-TTAAAATACATTTTAAGTAATTAATATAA
1 AAATATTTTAATATAATGATACATGAAACATAAATCTT-AAATACATTTTAAAAAATTAATATAA
**
90999693 ATTATTTGTAAAATTAA-T-TATATA
65 ATTACCTGTAAAATTAATTATATATA
90999717 AAATATTTT
1 AAATATTTT
90999726 TTAAAATTAA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
88 15 0.17
89 3 0.03
90 68 0.79
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (90 bp):
AAATATTTTAATATAATGATACATGAAACATAAATCTTAAATACATTTTAAAAAATTAATATAAA
TTACCTGTAAAATTAATTATATATA
Found at i:91001894 original size:10 final size:9
Alignment explanation
Indices: 91001878--91001908 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
91001868 TATTTGTGAA
91001878 AAATAAAAT
1 AAATAAAAT
91001887 ATAATAAAAT
1 A-AATAAAAT
91001897 AAATAAAAT
1 AAATAAAAT
91001906 AAA
1 AAA
91001909 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAAAT
Found at i:91006305 original size:10 final size:9
Alignment explanation
Indices: 91006289--91006319 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
91006279 AATTTGTGAA
91006289 AAATAAAAT
1 AAATAAAAT
91006298 ATAATAAAAT
1 A-AATAAAAT
91006308 AAATAAAAT
1 AAATAAAAT
91006317 AAA
1 AAA
91006320 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAAAT
Found at i:91009164 original size:46 final size:46
Alignment explanation
Indices: 91009097--91009191 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
91009087 CTAATTTGGC
*
91009097 CAAACACCAAACAAAAGTATCAATCGGACAACTCTCAAAGACATAT
1 CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
91009143 CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
1 CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
91009189 CAA
1 CAA
91009192 CATTTGACCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.52, C:0.26, G:0.07, T:0.15
Consensus pattern (46 bp):
CAAACACCAAACAAAAGTATCAATCAGACAACTCTCAAAGACATAT
Found at i:91009181 original size:24 final size:24
Alignment explanation
Indices: 91009108--91009181 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
91009098 AAACACCAAA
*
91009108 CAAAAGTATCAATCGGACAACTCT
1 CAAAAGTATCAATCAGACAACTCT
* * ***
91009132 C-AAAG-A-CATATCAAACACCAAA
1 CAAAAGTATCA-ATCAGACAACTCT
91009154 CAAAAGTATCAATCAGACAACTCT
1 CAAAAGTATCAATCAGACAACTCT
91009178 CAAA
1 CAAA
91009182 GACATATCAA
Statistics
Matches: 35, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
21 2 0.06
22 9 0.26
23 8 0.23
24 14 0.40
25 2 0.06
ACGTcount: A:0.50, C:0.26, G:0.08, T:0.16
Consensus pattern (24 bp):
CAAAAGTATCAATCAGACAACTCT
Found at i:91010555 original size:30 final size:30
Alignment explanation
Indices: 91010502--91010560 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
91010492 AACTTTGTTC
* *
91010502 GATTACAGGTATTATATTGTGTTACTGCTT
1 GATTACAGGTATTATACTATGTTACTGCTT
* *
91010532 GATTACAGGTATTCTGCTATGTTACTGCT
1 GATTACAGGTATTATACTATGTTACTGCT
91010561 ACTACATTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.44
Consensus pattern (30 bp):
GATTACAGGTATTATACTATGTTACTGCTT
Found at i:91012899 original size:22 final size:21
Alignment explanation
Indices: 91012864--91012921 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
91012854 AAAAGGTATC
* *
91012864 TACAAATTAAATCTCTAAAAT
1 TACAAATCATATCTCTAAAAT
*
91012885 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAAAT
* *
91012908 TGCATATCATATCT
1 TACAAATCATATCT
91012922 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:91012954 original size:35 final size:35
Alignment explanation
Indices: 91012893--91012983 Score: 125
Period size: 35 Copynumber: 2.6 Consensus size: 35
91012883 ATTACAAAAT
91012893 CATATC-TTCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATTCTAAGATT--ATATCATATCTAAGATTG
91012929 CA-ATCATATCTAAGATTATATCATATCTAAGATTG
1 CATATCAT-TCTAAGATTATATCATATCTAAGATTG
*
91012964 CATATCATT-GAAGATTATAT
1 CATATCATTCTAAGATTATAT
91012984 TTCCATATGA
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
34 10 0.20
35 24 0.47
36 8 0.16
37 9 0.18
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (35 bp):
CATATCATTCTAAGATTATATCATATCTAAGATTG
Found at i:91012979 original size:17 final size:19
Alignment explanation
Indices: 91012900--91012971 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
91012890 AATCATATCT
91012900 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
91012919 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
91012937 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
91012954 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
91012972 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.02
17 15 0.30
18 15 0.30
19 19 0.38
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:91013389 original size:45 final size:44
Alignment explanation
Indices: 91013326--91013519 Score: 262
Period size: 45 Copynumber: 4.3 Consensus size: 44
91013316 CGATATCTTC
* * *
91013326 TATCTTTGATCTACTCCCCGTCTAATACAGAGACGCAAAATCTG
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
*
91013370 CTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
1 -TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
* * *
91013415 TTTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTG
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
* * *
91013459 TTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTG
1 -TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
*
91013504 TCATCTTGGATCTGCT
1 T-ATCTTCGATCTGCT
91013520 TCAATATAAA
Statistics
Matches: 134, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
44 41 0.31
45 93 0.69
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (44 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
Found at i:91013457 original size:89 final size:89
Alignment explanation
Indices: 91013334--91013504 Score: 270
Period size: 89 Copynumber: 1.9 Consensus size: 89
91013324 TCTATCTTTG
**
91013334 ATCTACTCCCCGTCTAATACAGAGACGCAAAATCTGCTATCTTTGATCTGCTCCCCGTCTAATAC
1 ATCTACTCCCCGTCTAATACAGAGACGCAAAATCTGCTATCTCCGATCTGCTCCCCGTCTAATAC
91013399 AGAGACGCCAAATCTGTTTCTTCA
66 AGAGACGCCAAATCTGTTTCTTCA
* * * * *
91013423 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 ATCTACTCCCCGTCTAATACAGAGACGCAAAATCTGCTATCTCCGATCTGCTCCCCGTCTAATAC
*
91013488 AGAGATGCCAAATCTGT
66 AGAGACGCCAAATCTGT
91013505 CATCTTGGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (89 bp):
ATCTACTCCCCGTCTAATACAGAGACGCAAAATCTGCTATCTCCGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGTTTCTTCA
Found at i:91013662 original size:78 final size:78
Alignment explanation
Indices: 91013544--91013827 Score: 444
Period size: 78 Copynumber: 3.6 Consensus size: 78
91013534 TGAAGGTTAG
91013544 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
91013609 CAATGAATGTCCA
66 CAATGAAGGTCCA
* *
91013622 ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
91013687 CAATGAAGGTCCA
66 CAATGAAGGTCCA
* *
91013700 ATCTGCTGTGTCTTCGTTCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
91013765 CAATGAAGGT-CA
66 CAATGAAGGTCCA
* ** * * **
91013777 GATCTGCTATGTCTTCAATCTGCTTTCCATCGAATATGGAGATGCCAAATC
1 -ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
91013828 TGTTTCTTCG
Statistics
Matches: 189, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
77 2 0.01
78 187 0.99
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCCA
Found at i:91022253 original size:15 final size:15
Alignment explanation
Indices: 91022229--91022263 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
91022219 TCTAACCCTA
*
91022229 TATATTTATTTTTAT
1 TATATATATTTTTAT
*
91022244 TATATATATTTTTTT
1 TATATATATTTTTAT
91022259 TATAT
1 TATAT
91022264 TGTTATTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATATATATTTTTAT
Found at i:91022308 original size:7 final size:7
Alignment explanation
Indices: 91022296--91022441 Score: 63
Period size: 7 Copynumber: 21.0 Consensus size: 7
91022286 CCTTATTTTC
91022296 ATATTAT
1 ATATTAT
91022303 ATATTAT
1 ATATTAT
*
91022310 ATAAGTATT
1 AT-ATTA-T
*
91022319 TTATTAT
1 ATATTAT
91022326 ATATTATTT
1 ATATTA--T
91022335 ATATTAT
1 ATATTAT
91022342 -TATTAT
1 ATATTAT
*
91022348 TTATTAT
1 ATATTAT
*
91022355 TTATTAT
1 ATATTAT
* *
91022362 -TTTTCAC
1 ATATT-AT
* *
91022369 AAATTGT
1 ATATTAT
91022376 -TATTAT
1 ATATTAT
*
91022382 TTA-TAT
1 ATATTAT
*
91022388 ACATTAT
1 ATATTAT
91022395 ATATTAT
1 ATATTAT
* *
91022402 -TTTTTT
1 ATATTAT
*
91022408 ACA-TAT
1 ATATTAT
*
91022414 ATACTTTT
1 ATA-TTAT
91022422 ATATTAT
1 ATATTAT
91022429 ATATTAT
1 ATATTAT
91022436 A-ATTAT
1 ATATTAT
91022442 GGTATTAAAT
Statistics
Matches: 104, Mismatches: 23, Indels: 25
0.68 0.15 0.16
Matches are distributed among these distances:
6 30 0.29
7 52 0.50
8 13 0.12
9 9 0.09
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (7 bp):
ATATTAT
Done.