Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 273 of 332
Found at i:91323293 original size:93 final size:93
Alignment explanation
Indices: 91323181--91323351 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
91323171 GCCCATAAGT
* *
91323181 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91323246 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
91323274 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91323339 CGAGTTCGGATGC
66 CGAGCTCGGATGC
91323352 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:91323348 original size:46 final size:46
Alignment explanation
Indices: 91323173--91323348 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
91323163 TGTAACCCGC
* *
91323173 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
91323219 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
91323265 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
91323312 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
91323349 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:91325722 original size:15 final size:15
Alignment explanation
Indices: 91325700--91325747 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
91325690 AAGAAACCGA
91325700 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
91325715 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
91325729 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
91325745 ATA
1 ATA
91325748 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:91325732 original size:30 final size:28
Alignment explanation
Indices: 91325691--91325747 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
91325681 AAAGATAACA
*
91325691 AGAAACCGAATAAAGAAATCCAAGATAG
1 AGAAACCGAATAAAGAAACCCAAGATAG
91325719 AGAAATCCAGAATAAAGAAACCCAAGATA
1 AGAAA-CC-GAATAAAGAAACCCAAGATA
91325748 CGATACTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 5 0.19
29 2 0.08
30 19 0.73
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (28 bp):
AGAAACCGAATAAAGAAACCCAAGATAG
Found at i:91328791 original size:93 final size:93
Alignment explanation
Indices: 91328679--91328849 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
91328669 GCCCATAAGT
* *
91328679 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91328744 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
91328772 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91328837 CGAGTTCGGATGC
66 CGAGCTCGGATGC
91328850 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:91328846 original size:46 final size:46
Alignment explanation
Indices: 91328671--91328846 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
91328661 TGTAACCCGC
* *
91328671 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
91328717 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
91328763 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
91328810 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
91328847 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:91331481 original size:38 final size:39
Alignment explanation
Indices: 91331419--91331571 Score: 114
Period size: 44 Copynumber: 3.7 Consensus size: 39
91331409 ATCCTATACT
91331419 CCTGAAGTTGCAGTGG-G-ATGGATTGAAATCA-TTATCTC
1 CCTGAAGTTGCAGTGGAGCA--GATTGAAATCACTTATCTC
*
91331457 CCTGAAGTTGCAGTGGAGCAGATTGAAGCCACTAATCTTATCTC
1 CCTGAAGTTGCAGTGGAGCAGATTGAA---A-TCA-CTTATCTC
* * *
91331501 CCTAAAGTTGCAGTGGAGTAGATTAAAATCGCTAATCTTATCTC
1 CCTGAAGTTGCAGTGGAGCAGATTGAAAT--C--A-CTTATCTC
* * *
91331545 CTTGAAATTGCAGTAGAGCAGATTGAA
1 CCTGAAGTTGCAGTGGAGCAGATTGAA
91331572 GATAGCAAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
38 23 0.25
39 1 0.01
40 2 0.02
41 2 0.02
42 2 0.02
44 62 0.67
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (39 bp):
CCTGAAGTTGCAGTGGAGCAGATTGAAATCACTTATCTC
Found at i:91331513 original size:44 final size:44
Alignment explanation
Indices: 91331444--91331922 Score: 266
Period size: 44 Copynumber: 10.6 Consensus size: 44
91331434 GGATGGATTG
*
91331444 AAATCATTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAC
1 AAATC-TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAC
* * * ** *
91331489 TAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAATCGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAC
* * * **
91331533 TAATCTTATCTCCTTGAAA-TTGCAGTAGAGCAGATTGAAGATAGC
1 AAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTGAAGCCA-C
* ** * * * * *
91331578 AAATCTTATTTTTCTGAAGTTGTAGTGGAACAAATTAAAGCTACAAATTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGC--C-----AC
* * **
91331629 AAATCTTATCTCCCTAAAGTTGCAGTTGAGCAAATTGAAGATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCA-C
* * * * * *
91331674 AAATCTTATCTCTCTGGAA-TTGCAATAGAGCAGATTAAAGCTA-
1 AAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTGAAGCCAC
* * * * ***
91331717 TAATCCTTAACTCCTTAAAGTTGCAGTGGAGTA-AGTTGAAATTAC
1 AAAT-CTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TTGAAGCCAC
* * * * * *
91331762 AAGTCTCATCTCCTTGAAGATGCAGTGGAGCAGATTGAAGACAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAC
* * * ***
91331806 GAATCTTATCTCCCTAAAGTTGCAGTGGAGCATATTAAAAATAAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-GAAGCCAC
* * * *
91331851 AAATATTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCGAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAC
* * * *
91331895 AAGTCCTATAC-CTCTGAAGTTGCAGTGG
1 AAATCTTAT-CTCCCTAAAGTTGCAGTGG
91331923 GTCGGATTAA
Statistics
Matches: 324, Mismatches: 91, Indels: 39
0.71 0.20 0.09
Matches are distributed among these distances:
43 6 0.02
44 175 0.54
45 107 0.33
46 2 0.01
51 33 0.10
52 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (44 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAC
Found at i:91331711 original size:96 final size:96
Alignment explanation
Indices: 91331534--91331716 Score: 244
Period size: 96 Copynumber: 1.9 Consensus size: 96
91331524 TAAAATCGCT
* * * *
91331534 AATCTTATCTCCTTGAAATTGCAGTAGAGCAGATTGAAGATAGCAAATCTTATTTTTCTGAAGTT
1 AATCTTATCTCCCTGAAATTGCAGTAGAGCAAATTGAAGATAGCAAATCTTATCTCTCTGAAGTT
* * *
91331599 GTAGTGGAACAAATTAAAGCTACAAATTACA
66 GCAATAGAACAAATTAAAGCTACAAATTACA
*
91331630 AATCTTATCTCCCT-AAAGTTGCAGTTGAGCAAATTGAAGATAGCAAATCTTATCTCTCTGGAA-
1 AATCTTATCTCCCTGAAA-TTGCAGTAGAGCAAATTGAAGATAGCAAATCTTATCTCTCT-GAAG
* *
91331693 TTGCAATAGAGCAGATTAAAGCTA
64 TTGCAATAGAACAAATTAAAGCTA
91331717 TAATCCTTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
95 3 0.04
96 69 0.92
97 3 0.04
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (96 bp):
AATCTTATCTCCCTGAAATTGCAGTAGAGCAAATTGAAGATAGCAAATCTTATCTCTCTGAAGTT
GCAATAGAACAAATTAAAGCTACAAATTACA
Found at i:91331885 original size:89 final size:86
Alignment explanation
Indices: 91331630--91331891 Score: 258
Period size: 89 Copynumber: 3.0 Consensus size: 86
91331620 ACAAATTACA
* * * *
91331630 AATCTTATCTCCCTAAAGTTGCAGTTGAGCAAATTGAAGATAGCAAATCTTATCTCTCTGGAA-T
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGC-AATT-AAAATAACAAATCTTATCTCCCT-GAAGT
* * * *
91331694 TGCAATAGAGCAGATTAAAGCTAT
63 TGCAGTGGAGCAGATTGAAGCTAG
* * * * * * * * *
91331718 AATCCTTAACTCCTTAAAGTTGCAGTGGAGTAAGTTGAAATTACAAGTCTCATCTCCTTGAAGAT
1 AAT-CTTATCTCCCTAAAGTTGCAGTGGAGCAA-TTAAAATAACAAATCTTATCTCCCTGAAGTT
91331783 GCAGTGGAGCAGATTGAAGAC-ACG
64 GCAGTGGAGCAGATTGAAG-CTA-G
*
91331807 AATCTTATCTCCCTAAAGTTGCAGTGGAGCATATTAAAAATAACAAATATTATCTCCCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCA-ATT-AAAATAACAAATCTTATCTCCCTGAAGTT
*
91331872 GTAGTGGAGCAGATTGAAGC
64 GCAGTGGAGCAGATTGAAGC
91331892 GACAAGTCCT
Statistics
Matches: 139, Mismatches: 28, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
87 3 0.02
88 66 0.47
89 70 0.50
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (86 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAATTAAAATAACAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATTGAAGCTAG
Found at i:91338962 original size:14 final size:14
Alignment explanation
Indices: 91338945--91338975 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
91338935 AGTCAAATAT
91338945 TTTCCGGAAAATGA
1 TTTCCGGAAAATGA
*
91338959 TTTCTGGAAAATGA
1 TTTCCGGAAAATGA
91338973 TTT
1 TTT
91338976 ACTTTTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (14 bp):
TTTCCGGAAAATGA
Found at i:91339013 original size:19 final size:19
Alignment explanation
Indices: 91338959--91339023 Score: 85
Period size: 20 Copynumber: 3.3 Consensus size: 19
91338949 CGGAAAATGA
91338959 TTTCTGGAAAATGATTTACT
1 TTTCT-GAAAATGATTTACT
*
91338979 TTTCAGTAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
* *
91338999 TTTCTGAACATGATTTGCT
1 TTTCTGAAAATGATTTACT
91339018 TTTCTG
1 TTTCTG
91339024 GTGTTTGGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
19 18 0.45
20 22 0.55
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:91343504 original size:25 final size:26
Alignment explanation
Indices: 91343470--91343520 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
91343460 ATTATAAATA
91343470 AGAAAAATCTCTCTAGA-AACTTTCT
1 AGAAAAATCTCTCTAGAGAACTTTCT
* *
91343495 AGAATAATCTCTTTAGAGAACTTTCT
1 AGAAAAATCTCTCTAGAGAACTTTCT
91343521 CTCTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (26 bp):
AGAAAAATCTCTCTAGAGAACTTTCT
Found at i:91343652 original size:24 final size:23
Alignment explanation
Indices: 91343624--91343671 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
91343614 ATTTAATCAC
91343624 TTTAATGA-TAAATATTATATTAAA
1 TTTAAT-ATTAAATATTAT-TTAAA
*
91343648 TTTAATATTAAATCTTATTTAAA
1 TTTAATATTAAATATTATTTAAA
91343671 T
1 T
91343672 AATAGAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTAATATTAAATATTATTTAAA
Found at i:91346262 original size:18 final size:18
Alignment explanation
Indices: 91346235--91346269 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91346225 CAAAAACAGT
*
91346235 AAGCATCAAAATAGTTTA
1 AAGCACCAAAATAGTTTA
*
91346253 AAGCACCAAACTAGTTT
1 AAGCACCAAAATAGTTT
91346270 GGCACATCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (18 bp):
AAGCACCAAAATAGTTTA
Found at i:91351217 original size:55 final size:55
Alignment explanation
Indices: 91351157--91351281 Score: 173
Period size: 55 Copynumber: 2.3 Consensus size: 55
91351147 TGAGCCTGCC
*
91351157 AAAACAATACGGGCGTA-CGACACGCCCGTGTGGAAGAACC-GTGGGCGAACCTGTT
1 AAAACAACACGGGCG-AGCGACACGCCCGTGTGGAA-AACCTGTGGGCGAACCTGTT
* *
91351212 AAAACAACACGGGCGAGCGACACGCCCGTGTGGAACACCTGTGGTCGAACCTGTT
1 AAAACAACACGGGCGAGCGACACGCCCGTGTGGAAAACCTGTGGGCGAACCTGTT
**
91351267 AAATTAACACGGGCG
1 AAAACAACACGGGCG
91351282 CGGGGCTTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
54 4 0.06
55 59 0.94
ACGTcount: A:0.30, C:0.26, G:0.30, T:0.14
Consensus pattern (55 bp):
AAAACAACACGGGCGAGCGACACGCCCGTGTGGAAAACCTGTGGGCGAACCTGTT
Found at i:91359315 original size:135 final size:137
Alignment explanation
Indices: 91359071--91359342 Score: 521
Period size: 135 Copynumber: 2.0 Consensus size: 137
91359061 ACCTACAAGA
*
91359071 AAATAATATGACGAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
1 AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
91359136 AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTCTTTAAAAACTA
66 AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTCTTTAAAAACTA
91359201 GGATGAT
131 GGATGAT
91359208 AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATT-A-AAATAAAATAAAAT
1 AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
91359271 AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTCTTTAAAAACTA
66 AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTCTTTAAAAACTA
91359336 GGATGAT
131 GGATGAT
91359343 CCGTGTTGCA
Statistics
Matches: 134, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
135 86 0.64
136 1 0.01
137 47 0.35
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.22
Consensus pattern (137 bp):
AAATAATATGACAAGAAATATGAAACATAATATAAAGGAAAATAAATTAATAAATAAAATAAAAT
AAGCACTAGTAATACAATAAACGAAACAAAATTTACAACAACAAATAAAAGTTCTTTAAAAACTA
GGATGAT
Found at i:91376441 original size:16 final size:16
Alignment explanation
Indices: 91376420--91376451 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91376410 ACTGTAATGC
*
91376420 CCCAAAAATCTCAAAA
1 CCCAAAAATCCCAAAA
91376436 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
91376452 TCTCAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.34, G:0.00, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:91377763 original size:16 final size:16
Alignment explanation
Indices: 91377725--91377769 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
91377715 ATGTATTGGC
*
91377725 AAAAGCCGAAAAGTCG
1 AAAAGCTGAAAAGTCG
*
91377741 AAAAGCTGAAATGTCG
1 AAAAGCTGAAAAGTCG
91377757 AAAAGCT-AAAAGT
1 AAAAGCTGAAAAGT
91377770 TTGGCTACGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.51, C:0.13, G:0.22, T:0.13
Consensus pattern (16 bp):
AAAAGCTGAAAAGTCG
Found at i:91378030 original size:29 final size:28
Alignment explanation
Indices: 91377978--91378090 Score: 129
Period size: 28 Copynumber: 4.0 Consensus size: 28
91377968 GTGAGCATGA
* *
91377978 ATATGAATGTGA-CGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
91378005 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
91378034 ATATACAGGTGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* * * *
91378062 ATATGAATATGATTAGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
91378090 A
1 A
91378091 AATATAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
27 11 0.15
28 39 0.53
29 24 0.32
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:91378063 original size:57 final size:56
Alignment explanation
Indices: 91377991--91378099 Score: 146
Period size: 57 Copynumber: 1.9 Consensus size: 56
91377981 TGAATGTGAC
* * *
91377991 GGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 GGGCCTAATGGGCCATATAAATATGA-TTAGGCCTAATGGGCCAAATACAGGTGATT
* * * *
91378048 GGGCTTAATGGGCCATATGAATATGATTAGGCTTAATGGGCCAAATATAGGT
1 GGGCCTAATGGGCCATATAAATATGATTAGGCCTAATGGGCCAAATACAGGT
91378100 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
56 22 0.49
57 23 0.51
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (56 bp):
GGGCCTAATGGGCCATATAAATATGATTAGGCCTAATGGGCCAAATACAGGTGATT
Found at i:91379689 original size:30 final size:30
Alignment explanation
Indices: 91379638--91379694 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
91379628 CAAAATCATA
91379638 TTTTTGCAAAATTACAATTTACCCCTAAAC
1 TTTTTGCAAAATTACAATTTACCCCTAAAC
*
91379668 TTTTT-CAAAATTACATTTTTACCCCTA
1 TTTTTGCAAAATTACA-ATTTACCCCTA
91379695 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.33, C:0.23, G:0.02, T:0.42
Consensus pattern (30 bp):
TTTTTGCAAAATTACAATTTACCCCTAAAC
Found at i:91381080 original size:59 final size:61
Alignment explanation
Indices: 91381009--91381125 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
91380999 ATCACTTTAA
* * * * *
91381009 TATTAAATTAATATAATTTTTATC-CA-GATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATGTTTATCACAGGATAAACATTAAATTAAATTTAATATTAAATCT
91381068 TATTAAAATAATAGAATGTTTATCTACAGGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATGTTTATC-ACAGGATAAACATTAAATTAAATTTAATATTAA
91381126 GATAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
61 2 0.04
62 27 0.54
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (61 bp):
TATTAAAATAATAGAATGTTTATCACAGGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:91383253 original size:15 final size:16
Alignment explanation
Indices: 91383226--91383255 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
91383216 TATGCATGTA
91383226 AAATATAAAAAGACAG
1 AAATATAAAAAGACAG
91383242 AAATAT-AAAAGACA
1 AAATATAAAAAGACA
91383256 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.07, G:0.10, T:0.13
Consensus pattern (16 bp):
AAATATAAAAAGACAG
Found at i:91391441 original size:27 final size:27
Alignment explanation
Indices: 91391411--91391610 Score: 213
Period size: 27 Copynumber: 7.4 Consensus size: 27
91391401 ATTACCAAAG
* * * *
91391411 TACCCTCAATTTATAGAATCATTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
*
91391438 TACCCTTGATTTATAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* * *
91391465 CACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* * *
91391492 TACTCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTGTTT
* * *
91391519 TACCTTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* **
91391546 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTGTTT
* *
91391573 TACCCTC-AGTTTACAAAATTACTATTT
1 TACCCTCGA-TTTATAAAATTACTGTTT
91391600 TACCCTCGATT
1 TACCCTCGATT
91391611 GTGAAATTAC
Statistics
Matches: 147, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 145 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTGTTT
Found at i:91391492 original size:54 final size:54
Alignment explanation
Indices: 91391434--91391610 Score: 248
Period size: 54 Copynumber: 3.3 Consensus size: 54
91391424 TAGAATCATT
* * *
91391434 GTTTTACCCTTGATTTATAAAATTACTGTTTCACCCTCGATTTACAAAATTACC
1 GTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACC
* * *
91391488 GTTTTACTCTCGATTTATAGAATTACTATTTTACCTTCGATTTACAAAATTACC
1 GTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACC
* * *
91391542 GTTTTACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACT
1 GTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGA-TTTACAAAATTACC
*
91391596 ATTTTACCCTCGATT
1 GTTTTACCCTCGATT
91391611 GTGAAATTAC
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 108 0.99
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (54 bp):
GTTTTACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACC
Found at i:91391508 original size:81 final size:81
Alignment explanation
Indices: 91391419--91391610 Score: 244
Period size: 81 Copynumber: 2.4 Consensus size: 81
91391409 AGTACCCTCA
* * * *
91391419 ATTTATAGAATCATTGTTTTACCCTT-GATTTATAAAATTACTGTTTCACCCTCGATTTACAAAA
1 ATTTATAGAATCACTATTTTA-CCTTCGATTTACAAAATTACCGTTTCACCCTCGATTTACAAAA
*
91391483 TTACCGTTTTACTCTCG
65 TTACCATTTTACTCTCG
* *
91391500 ATTTATAGAATTACTATTTTACCTTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAAT
1 ATTTATAGAATCACTATTTTACCTTCGATTTACAAAATTACCGTTTCACCCTCGATTTACAAAAT
*
91391565 TACCATTTTACCCTC-
66 TACCATTTTACTCTCG
* * * *
91391580 AGTTTACAAAATTACTATTTTACCCTCGATT
1 A-TTTATAGAATCACTATTTTACCTTCGATT
91391611 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
80 5 0.05
81 93 0.95
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (81 bp):
ATTTATAGAATCACTATTTTACCTTCGATTTACAAAATTACCGTTTCACCCTCGATTTACAAAAT
TACCATTTTACTCTCG
Found at i:91391672 original size:27 final size:27
Alignment explanation
Indices: 91391642--91391790 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
91391632 TGTAGGATAG
*
91391642 AATTACCAAAATACCTCTAGCTTGTAA
1 AATTACCAAAATACCTCTAGTTTGTAA
*
91391669 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCTCTAGTTTGTAA
* *
91391696 AATTACCGAAATA-CTACTAGTTTGTGA
1 AATTACCAAAATACCT-CTAGTTTGTAA
* * *
91391723 AATTATCGAAATACC-CTCAATTTGTAA
1 AATTACCAAAATACCTCT-AGTTTGTAA
**
91391750 AATTACCAAAATACC-CT-GATTTACAA
1 AATTACCAAAATACCTCTAG-TTTGTAA
*
91391776 AATTACAAAAATACC
1 AATTACCAAAATACC
91391791 CTTGACTTTC
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.21
27 81 0.78
28 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCTCTAGTTTGTAA
Found at i:91391681 original size:54 final size:54
Alignment explanation
Indices: 91391609--91391763 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
91391599 TTACCCTCGA
* *
91391609 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCT-CTAGC
1 TTGTGAAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATA-CTACTAGC
* * ** * *
91391663 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACTACTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACTACTAGC
* * **
91391717 TTGTGAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAAAATAC
1 TTGTGAAATTACCGAAATACCCCT-AGTAGGTAAAATTACCAAAATAC
91391764 CCTGATTTAC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
53 6 0.07
54 76 0.89
55 3 0.04
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACTACTAGC
Found at i:91391983 original size:27 final size:28
Alignment explanation
Indices: 91391908--91391984 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 28
91391898 AACCCTAATA
* *
91391908 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCATAATAGCCCTTGTAG
* *
91391935 GGTAAAGTGACCATAATA-CCCTTGTAT
1 GGTAAAATGACCATAATAGCCCTTGTAG
91391962 GGTAAAATGA-CA-AATATGCCCTT
1 GGTAAAATGACCATAATA-GCCCTT
91391985 ATGTTCCGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 4 0.10
26 2 0.05
27 35 0.83
28 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCATAATAGCCCTTGTAG
Found at i:91392776 original size:25 final size:25
Alignment explanation
Indices: 91392738--91392807 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
91392728 AGGAAGTGCT
* *
91392738 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
*
91392763 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
*
91392788 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
91392808 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:91392820 original size:24 final size:24
Alignment explanation
Indices: 91392763--91392834 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
91392753 TAGTTTACCG
*
91392763 AAAAG-GGCTTTGCCCTAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
91392787 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
91392811 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
91392835 ATGATAAAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:91393061 original size:30 final size:31
Alignment explanation
Indices: 91393027--91393109 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
91393017 AGCTTACAGT
91393027 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
91393057 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
91393088 AAAGGCTTCGGTCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
91393110 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 16 0.31
31 35 0.69
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:91394873 original size:9 final size:9
Alignment explanation
Indices: 91394823--91394904 Score: 83
Period size: 9 Copynumber: 9.1 Consensus size: 9
91394813 CTCTATTACA
*
91394823 GTTCTTACT
1 GTTCCTACT
* *
91394832 ATTCCTATT
1 GTTCCTACT
91394841 GTTCCTACT
1 GTTCCTACT
*
91394850 GTTCCTATT
1 GTTCCTACT
91394859 GTTCCTACT
1 GTTCCTACT
* *
91394868 GCTCCTACA
1 GTTCCTACT
*
91394877 GTTCCTGCT
1 GTTCCTACT
* *
91394886 GTTTCTACC
1 GTTCCTACT
91394895 GTTCCTACT
1 GTTCCTACT
91394904 G
1 G
91394905 CATCTACTAC
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.12, C:0.30, G:0.12, T:0.45
Consensus pattern (9 bp):
GTTCCTACT
Found at i:91394910 original size:18 final size:17
Alignment explanation
Indices: 91394859--91394911 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
91394849 TGTTCCTATT
91394859 GTTCCTACTGCTCCTACA
1 GTTCCTACTGCT-CTACA
* * *
91394877 GTTCCTGCTGTTTCTACC
1 GTTCCTACTG-CTCTACA
91394895 GTTCCTACTGCATCTAC
1 GTTCCTACTGC-TCTAC
91394912 TACTAATACT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.13, C:0.36, G:0.13, T:0.38
Consensus pattern (17 bp):
GTTCCTACTGCTCTACA
Found at i:91400070 original size:20 final size:20
Alignment explanation
Indices: 91400047--91400270 Score: 139
Period size: 20 Copynumber: 11.2 Consensus size: 20
91400037 AAGGGGCATG
*
91400047 AAAGTGCAATCAGGGGTACC
1 AAAGTGCAATCAGGGGCACC
* * **
91400067 AAAGTACAAACAGGGGCATG
1 AAAGTGCAATCAGGGGCACC
* *
91400087 TAAGTGCAATCAGGGGTACC
1 AAAGTGCAATCAGGGGCACC
*
91400107 GAAGTGCAAAT-AGGGGCACC
1 AAAGTGC-AATCAGGGGCACC
* *
91400127 TAAA-TGCAATCAGGGGTACA
1 -AAAGTGCAATCAGGGGCACC
* **
91400147 AAAGTACAAAT-AGGGGCATG
1 AAAGTGC-AATCAGGGGCACC
* * **
91400167 AGAGTGCTATCAGGGGCATT
1 AAAGTGCAATCAGGGGCACC
* * *
91400187 AAAGTACAAACAGGGGCACG
1 AAAGTGCAATCAGGGGCACC
* *
91400207 AAAGTGTAATCAGGGGTACC
1 AAAGTGCAATCAGGGGCACC
* * *
91400227 AAAGTACAAACAGGGGCACG
1 AAAGTGCAATCAGGGGCACC
* * * *
91400247 TAAGTACAATCAAGGGTACC
1 AAAGTGCAATCAGGGGCACC
91400267 AAAG
1 AAAG
91400271 CACAAACATG
Statistics
Matches: 152, Mismatches: 46, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
19 8 0.05
20 136 0.89
21 8 0.05
ACGTcount: A:0.39, C:0.17, G:0.29, T:0.15
Consensus pattern (20 bp):
AAAGTGCAATCAGGGGCACC
Found at i:91400093 original size:40 final size:40
Alignment explanation
Indices: 91400029--91400278 Score: 286
Period size: 40 Copynumber: 6.2 Consensus size: 40
91400019 GAGTTACCGG
* * * *
91400029 AGTATAAAAAGGGGCATGAAAGTGCAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
* *
91400069 AGTACAAACAGGGGCATGTAAGTGCAATCAGGGGTACCGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
* * * * *
91400109 AGTGCAAATAGGGGCACCTAAATGCAATCAGGGGTACAAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
* * * * **
91400149 AGTACAAATAGGGGCATG-AGAGTGCTATCAGGGGCATTAA
1 AGTACAAACAGGGGCACGTA-AGTGCAATCAGGGGTACCAA
* *
91400189 AGTACAAACAGGGGCACGAAAGTGTAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
* *
91400229 AGTACAAACAGGGGCACGTAAGTACAATCAAGGGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
*
91400269 AGCACAAACA
1 AGTACAAACA
91400279 TGCAATTTAC
Statistics
Matches: 177, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 175 0.99
41 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.14
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAA
Found at i:91400808 original size:21 final size:21
Alignment explanation
Indices: 91400770--91400809 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91400760 TCAACTTTCT
*
91400770 TAATTAAGCTTTAATAAATTA
1 TAATTAAGCTCTAATAAATTA
91400791 TAATTAAGC-CTAATTAAAT
1 TAATTAAGCTCTAA-TAAAT
91400810 CACTTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.40
Consensus pattern (21 bp):
TAATTAAGCTCTAATAAATTA
Found at i:91402173 original size:22 final size:22
Alignment explanation
Indices: 91402147--91402190 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
91402137 AATGTTAGAT
91402147 TATAAGTTAGATGTTTGAGTTA
1 TATAAGTTAGATGTTTGAGTTA
*
91402169 TATAAGTTAGTTGTTTGAGTTA
1 TATAAGTTAGATGTTTGAGTTA
91402191 CAAAATACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.48
Consensus pattern (22 bp):
TATAAGTTAGATGTTTGAGTTA
Found at i:91402822 original size:17 final size:18
Alignment explanation
Indices: 91402790--91402823 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
91402780 TAGTCTAATT
*
91402790 AAAAATTTATTAAAAATA
1 AAAAATTTATAAAAAATA
91402808 AAAAATTT-TAAAAAAT
1 AAAAATTTATAAAAAAT
91402824 CTAATTCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATTTATAAAAAATA
Found at i:91404970 original size:16 final size:16
Alignment explanation
Indices: 91404949--91404982 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
91404939 AATATGGTAT
91404949 TACACATAAGATAATA
1 TACACATAAGATAATA
91404965 TACACATAAGATAATA
1 TACACATAAGATAATA
91404981 TA
1 TA
91404983 TCTAGCGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.26
Consensus pattern (16 bp):
TACACATAAGATAATA
Found at i:91405550 original size:147 final size:147
Alignment explanation
Indices: 91405283--91405582 Score: 510
Period size: 147 Copynumber: 2.0 Consensus size: 147
91405273 ATTTTCGAGT
*
91405283 ATTTTTATAAAATACATACCGGTGCTGCCTGATACAGTGGCAGTACAAAAAATTATTTTCTTTTT
1 ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCAGTACAAAAAATTATTTTCTTTTT
* *
91405348 AAATGTAAGGATAGTTGAATGATTGGGGGAAATTTGGGGAGTGCTGCCTGACATTTCGACAACAC
66 AAATGTAAGGATAGCTGAATGATTGGGGGAAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
**
91405413 CTATTGTGCAATGTTGA
131 CTACGGTGCAATGTTGA
*
91405430 ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
1 ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCAGTACAAAAAATTATTTTCTTTTT
* * *
91405495 AAATGTAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCGTGACATTTCAACAACAC
66 AAATGTAAGGATAGCTGAATGATTGGGGGAAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
*
91405560 CTGCGGTGCAATGTTGA
131 CTACGGTGCAATGTTGA
91405577 ATTTTT
1 ATTTTT
91405583 CTATTTACAC
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
147 143 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (147 bp):
ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCAGTACAAAAAATTATTTTCTTTTT
AAATGTAAGGATAGCTGAATGATTGGGGGAAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
CTACGGTGCAATGTTGA
Found at i:91405723 original size:174 final size:174
Alignment explanation
Indices: 91405430--91405760 Score: 590
Period size: 174 Copynumber: 1.9 Consensus size: 174
91405420 GCAATGTTGA
91405430 ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
1 ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
* *
91405495 AAATGTAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCGTGACATTTCAACAACAC
66 AAATATAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
*
91405560 CTGCGGTGCAATGTTGAATTTTTCTATTTACACTATTTTCGAGT
131 CTACGGTGCAATGTTGAATTTTTCTATTTACACTATTTTCGAGT
* *
91405604 ATTTTTATAAAATACATACCGGTGCTGCCTGATGCAGTGGCGGTACAAAAAATTATTTTCTTTTT
1 ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
*
91405669 AAATATAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCGACAACAC
66 AAATATAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
**
91405734 CTACTTTGCAATGTTGAATTTTTCTAT
131 CTACGGTGCAATGTTGAATTTTTCTAT
91405761 ATCTGTATAT
Statistics
Matches: 149, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.36
Consensus pattern (174 bp):
ATTTTTATAAAATACATACCGATGCTGCCTGATACAGTGGCGGTACAAAAAATTATTTTCTTTTT
AAATATAATGATAGCTGAATGATTGGGGGGAATTTGGGGAGTGCTGCCTGACATTTCAACAACAC
CTACGGTGCAATGTTGAATTTTTCTATTTACACTATTTTCGAGT
Found at i:91406248 original size:22 final size:21
Alignment explanation
Indices: 91406200--91406248 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
91406190 ATTTTATTGT
91406200 TATTTTTTATTATTTTGTTAC
1 TATTTTTTATTATTTTGTTAC
*
91406221 TCTTTTCTTATTATTTT-TTCAC
1 TATTTT-TTATTATTTTGTT-AC
91406243 TATTTT
1 TATTTT
91406249 GCTACCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.16, C:0.10, G:0.02, T:0.71
Consensus pattern (21 bp):
TATTTTTTATTATTTTGTTAC
Found at i:91406724 original size:53 final size:53
Alignment explanation
Indices: 91406643--91406797 Score: 215
Period size: 53 Copynumber: 2.9 Consensus size: 53
91406633 TAGGAGCCAC
* *
91406643 GTAGTTATGAAGGTCATTGATTTCGATGCCTACCCACCTTATTAAGAAACCAT
1 GTAGTTCTGAAGATCATTGATTTCGATGCCTACCCACCTTATTAAGAAACCAT
* * *
91406696 GTAGTTCTGAAGATCATTTATTAT-GATGCCTACCAACGTTATTAAGAAACCAT
1 GTAGTTCTGAAGATCATTGATT-TCGATGCCTACCCACCTTATTAAGAAACCAT
* *
91406749 GTAGTTCTGAAGATCATTGATTTCAATCCCTACCC-CCATTATTAAGAAA
1 GTAGTTCTGAAGATCATTGATTTCGATGCCTACCCACC-TTATTAAGAAA
91406798 GAGAGTCGCA
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
52 2 0.02
53 86 0.97
54 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (53 bp):
GTAGTTCTGAAGATCATTGATTTCGATGCCTACCCACCTTATTAAGAAACCAT
Found at i:91407401 original size:29 final size:30
Alignment explanation
Indices: 91407346--91407424 Score: 81
Period size: 29 Copynumber: 2.6 Consensus size: 30
91407336 ATCTCAAAAT
* *
91407346 TATATATGAACTATAGTTTGATATGCAATTG
1 TATATATGAACTTTAATTT-ATATGCAATTG
* *
91407377 TATATATGAACTTTAATTT-TGTGCAATTT
1 TATATATGAACTTTAATTTATATGCAATTG
*
91407406 TATA-ATGAAATTTTAATTT
1 TATATATG-AACTTTAATTT
91407425 GATTCAATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 3 0.07
29 22 0.52
31 17 0.40
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.48
Consensus pattern (30 bp):
TATATATGAACTTTAATTTATATGCAATTG
Found at i:91413546 original size:21 final size:21
Alignment explanation
Indices: 91413500--91413547 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
91413490 AATATTTACG
*
91413500 AAGTGTCATTAAAAAATTTTA
1 AAGTTTCATTAAAAAATTTTA
*
91413521 AAGTTTCATTGAAAAATTTTA
1 AAGTTTCATTAAAAAATTTTA
91413542 AAGTTT
1 AAGTTT
91413548 TGATAGTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (21 bp):
AAGTTTCATTAAAAAATTTTA
Found at i:91414790 original size:96 final size:96
Alignment explanation
Indices: 91414624--91414810 Score: 225
Period size: 96 Copynumber: 1.9 Consensus size: 96
91414614 ATGTCATTAG
* * *** * *
91414624 GGTTACCATGTTTCGGGTGTTGGTTTTGAATGTCCTACTGGTGGCTAAGTTCTGGCATGTGTTGT
1 GGTTACCATGTTTCGGGTGCTGGTATTGAATGTCCTACCAATGGCTAAGTTCTGACATGTGTTGC
** *
91414689 AGATACTTGACAGCTTGTGTGAGCAGACCCA
66 AGATACTCAACAGCTTGCGTGAGCAGACCCA
* *
91414720 GGTTACCATGTTTTGGGTGCTGGTATTGAATGTCCTACCAATGGCTGAGGTTC-GACAT-TAGTT
1 GGTTACCATGTTTCGGGTGCTGGTATTGAATGTCCTACCAATGGCT-AAGTTCTGACATGT-GTT
*
91414783 GCGGATACTCAACAGCTTGCGTGAGCAG
64 GCAGATACTCAACAGCTTGCGTGAGCAG
91414811 CATAATGTAG
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
95 1 0.01
96 70 0.92
97 5 0.07
ACGTcount: A:0.19, C:0.18, G:0.30, T:0.33
Consensus pattern (96 bp):
GGTTACCATGTTTCGGGTGCTGGTATTGAATGTCCTACCAATGGCTAAGTTCTGACATGTGTTGC
AGATACTCAACAGCTTGCGTGAGCAGACCCA
Found at i:91425089 original size:44 final size:46
Alignment explanation
Indices: 91424933--91425099 Score: 178
Period size: 49 Copynumber: 3.6 Consensus size: 46
91424923 AGATGTTGAC
* * *
91424933 GCCATGTCCCAGACATGGTTTTACACTGGCTAGCACATCAAAG-TCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTA-CACAACAAAGCT-GAT
* * * * *
91424981 GCCATGTCCCGGACAGGTCTTACACTGACTTTCATATATCGAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGAC-TACACA-A-CAAAGCTGAT
91425030 GCCATGTCCCAGACAGGTCTTACACTGAC-ACACAAC-AAGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTACACAACAAAGCTGAT
*
91425074 GCCATGTCCCTGACAGGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
91425100 AGCTTGTATA
Statistics
Matches: 102, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
44 32 0.31
45 1 0.01
46 1 0.01
47 18 0.18
48 15 0.15
49 34 0.33
50 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (46 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTACACAACAAAGCTGAT
Found at i:91425096 original size:93 final size:96
Alignment explanation
Indices: 91424930--91425147 Score: 261
Period size: 93 Copynumber: 2.3 Consensus size: 96
91424920 ACAAGATGTT
* * *
91424930 GACGCCATGTCCCAGACATGGTTTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCCGGAC
1 GACGCCATGTCCCAGACA-GGTCTTACACTGACTAGCACAACAAAGTCGATGCCATGTCCCGGAC
* *
91424995 AGGTCTTACACT-GACTT-TCATATATCGAGGCT
65 AGGTCTTACACTAG-CTTGT-ATATAGCGAGGCC
* *
91425027 GATGCCATGTCCCAGACAGGTCTTACACTGAC-A-CACAAC-AAG-CTGATGCCATGTCCCTGAC
1 GACGCCATGTCCCAGACAGGTCTTACACTGACTAGCACAACAAAGTC-GATGCCATGTCCCGGAC
*
91425088 AGGTCTTACACTAGCTTGTATATCGCGAGGCC
65 AGGTCTTACACTAGCTTGTATATAGCGAGGCC
* *
91425120 GACG-TATGTCCCAGACATGTCTTACACT
1 GACGCCATGTCCCAGACAGGTCTTACACT
91425148 AGCTCTCGTC
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
92 23 0.21
93 47 0.44
94 7 0.07
95 1 0.01
96 12 0.11
97 17 0.16
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (96 bp):
GACGCCATGTCCCAGACAGGTCTTACACTGACTAGCACAACAAAGTCGATGCCATGTCCCGGACA
GGTCTTACACTAGCTTGTATATAGCGAGGCC
Found at i:91425148 original size:48 final size:48
Alignment explanation
Indices: 91425071--91425290 Score: 193
Period size: 46 Copynumber: 4.6 Consensus size: 48
91425061 ACAACAAGCT
* * *
91425071 GATGCCATGTCCCTGACAGGTCTTACACTAGCTTGTATATCGCGAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
* * * ** * *
91425120 GACGTATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
* * * *
91425166 GATGCATGTCCCAAACATGTCTTACACT-GACTTGCATCTCTCGAGACC
1 GATGCATGTCCCAGACATGTCTTACACTAG-CTTGTATATCTCGAGGCC
* *
91425214 GATGCATGTTCCAGACATGTCTTACACTAGCTCTTGTA-A--T-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAG--CTTGTATATCTCGAGGCC
* *
91425260 GATGTATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
91425291 ACACATATCA
Statistics
Matches: 136, Mismatches: 30, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 64 0.47
47 4 0.03
48 57 0.42
49 4 0.03
50 5 0.04
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCC
Found at i:91425261 original size:94 final size:93
Alignment explanation
Indices: 91424930--91425290 Score: 250
Period size: 94 Copynumber: 3.8 Consensus size: 93
91424920 ACAAGATGTT
* * ** * * * *
91424930 GACGCCATGTCCCAGACATGGTTTTACACTGGCTAGCACATCAAAGTCGATGCCATGTCCCGGAC
1 GACG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCTC-TCAATGCCGATG-CATGTCCCAGAC
* * ** * *
91424995 AGGTCTTACACT-GACTTTCATATATCGAGGCT
62 ATGTCTTACACTAG-CTTGCATATCGCGAGACC
* * * * ** * *
91425027 GATGCCATGTCCCAGACAGGTCTTACACT-GACACAC-AACAA-GCTGATGCCATGTCCCTGACA
1 GACG-CATGTCCCAGACATGTCTTACACTAG-CTCTCTCTCAATGCCGATG-CATGTCCCAGACA
* * *
91425089 GGTCTTACACTAGCTTGTATATCGCGAGGCC
63 TGTCTTACACTAGCTTGCATATCGCGAGACC
* *
91425120 GACGTATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCATGTCCCAAACATG
1 GACGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGCCGATGCATGTCCCAGACATG
* *
91425185 TCTTACACT-GACTTGCATCTCTCGAGACC
65 TCTTACACTAG-CTTGCATATCGCGAGACC
* * * * *
91425214 GATGCATGTTCCAGACATGTCTTACACTAGCTCT-TGT-AATGTGGCCGATGTATGTCCTAGACA
1 GACGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAA--T-GCCGATGCATGTCCCAGACA
91425277 TGTCTTACACTAGC
63 TGTCTTACACTAGC
91425291 ACACATATCA
Statistics
Matches: 215, Mismatches: 38, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
91 2 0.01
92 27 0.13
93 48 0.22
94 102 0.47
95 8 0.04
96 11 0.05
97 17 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (93 bp):
GACGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGCCGATGCATGTCCCAGACATGT
CTTACACTAGCTTGCATATCGCGAGACC
Found at i:91433105 original size:25 final size:25
Alignment explanation
Indices: 91433071--91433125 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
91433061 GTATGTGGGG
*
91433071 GCGAGTTATGTGGAGGCTCATCGAC
1 GCGAGTTATGTGGAGGCTCACCGAC
*
91433096 GCGAGTTATGTGGAGGCTCGCCGAC
1 GCGAGTTATGTGGAGGCTCACCGAC
91433121 GCGAG
1 GCGAG
91433126 ATGAGCCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.18, C:0.22, G:0.40, T:0.20
Consensus pattern (25 bp):
GCGAGTTATGTGGAGGCTCACCGAC
Found at i:91434274 original size:25 final size:23
Alignment explanation
Indices: 91434222--91434276 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
91434212 TAATAATAGT
91434222 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
91434245 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
91434270 AATAGTG
1 AATAGTG
91434277 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:91434357 original size:22 final size:22
Alignment explanation
Indices: 91434332--91434406 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
91434322 TATGAAATAG
*
91434332 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
91434354 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
91434379 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
91434401 AGATAA
1 ATATAA
91434407 CATGTAAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:91434376 original size:25 final size:25
Alignment explanation
Indices: 91434338--91434482 Score: 111
Period size: 25 Copynumber: 5.9 Consensus size: 25
91434328 ATAGATATAA
*
91434338 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTGT
* *
91434363 AAAAAATACATACATAATATAAT-T
1 AAAAAATATATACATAATATAGTGT
* *
91434387 --AAAATATATACATAAGATAACATGT
1 AAAAAATATATACATAATAT-A-GTGT
* *
91434412 AAAAATATATATAAATAATATAGTAT
1 AAAAA-ATATATACATAATATAGTGT
* * *
91434438 TAAAGATATATACATAAAATA--GT
1 AAAAAATATATACATAATATAGTGT
* * *
91434461 ATAATATATATACGTAATATAG
1 AAAAAATATATACATAATATAG
91434483 AATTTAGAAT
Statistics
Matches: 94, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
22 16 0.17
23 18 0.19
24 3 0.03
25 35 0.37
26 5 0.05
27 4 0.04
28 13 0.14
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTGT
Found at i:91434537 original size:23 final size:23
Alignment explanation
Indices: 91434376--91434545 Score: 68
Period size: 23 Copynumber: 7.3 Consensus size: 23
91434366 AAATACATAC
*
91434376 ATAATAT-A-ATTAAAATATATAC
1 ATAATATAATATTAAAA-ATATAT
* *
91434398 ATAAGATAACATGTAAAAATATAT
1 ATAATATAATAT-TAAAAATATAT
*
91434422 ATAAATAATATAGTATTAAAGATATAT
1 AT-AAT-ATA-A-TATTAAAAATATAT
* * * *
91434449 A-CATAAAATAGTATAATATATAT
1 ATAATATAATATTA-AAAATATAT
* * *
91434472 ACGTAATATAGA-ATTTAGAATATAC
1 A--TAATATA-ATATTAAAAATATAT
* *
91434497 CTAATAT--T-TAAAATAATATAT
1 ATAATATAATATTAAA-AATATAT
91434518 ATAATATAATATTAAAAATATA-
1 ATAATATAATATTAAAAATATAT
91434540 ATAATA
1 ATAATA
91434546 ACAAAAAAAA
Statistics
Matches: 108, Mismatches: 23, Indels: 34
0.65 0.14 0.21
Matches are distributed among these distances:
20 2 0.02
21 12 0.11
22 16 0.15
23 24 0.22
24 15 0.14
25 15 0.14
26 9 0.08
27 13 0.12
28 2 0.02
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (23 bp):
ATAATATAATATTAAAAATATAT
Found at i:91434867 original size:16 final size:16
Alignment explanation
Indices: 91434829--91434867 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
91434819 ATCTCCAAAA
*
91434829 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
91434845 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
91434861 AATAACT
1 AAAAACT
91434868 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:91435062 original size:30 final size:30
Alignment explanation
Indices: 91435026--91435123 Score: 169
Period size: 30 Copynumber: 3.3 Consensus size: 30
91435016 AGGTACAAGT
*
91435026 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
91435056 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* *
91435086 GTTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
91435116 GGTGGTGG
1 GGTGGTGG
91435124 CAAAGGCTAG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:91435083 original size:18 final size:18
Alignment explanation
Indices: 91435060--91435113 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
91435050 GGAGTAGGTG
91435060 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
91435078 GTGGAG-TAGT-T-G---
1 GTGGAGCAAGTGTGGCTA
91435090 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
91435108 GTGGAG
1 GTGGAG
91435114 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 3 0.11
14 1 0.04
15 2 0.07
16 1 0.04
17 3 0.11
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.24
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:91436134 original size:89 final size:88
Alignment explanation
Indices: 91435775--91436329 Score: 472
Period size: 90 Copynumber: 6.3 Consensus size: 88
91435765 TTAACTCATT
* * * *
91435775 TCTCGCAATATGAATTGACTTTTT-AAAAC-TAGACATT-AAAAACAGAAATTGAAAATAGCTCA
1 TCTCGCAATATGAGTTGATTTTTTGAAAACATA-A-ATTGAAAAAAAGAAATTGAAAATACCTCA
* * *
91435837 GCACGTGAGCC-AAGGCTCAACTCACT
64 G--CGTGTGCCTGAGGCTCAACTCACC
* * * ** *
91435863 TCTCACAATATGAGTTGA-TTTTT-AAAACA-AAATTTGTAAAACAGATTTTGAAAATACCTCGG
1 TCTCGCAATATGAGTTGATTTTTTGAAAACATAAA-TTGAAAAAAAGAAATTGAAAATACCTCAG
** *
91435925 TATGCGACCTGAGGCTCAACTCACC
65 CGTGTG-CCTGAGGCTCAACTCACC
* *
91435950 TCTCGTAATATGAGTTGA-TTTTT-AAAAGCATAAATTGAAAAAAAAATCAATTGAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTTGAAAA-CATAAATTGAAAAAAAGA--AATTGAAAATACCTC
* * *
91436013 GGCGTGTGATCTGAGGCTCAACTCCCC
63 AGCGTGTG-CCTGAGGCTCAACTCACC
* *
91436040 TCTCGCATTATGAGTTGATTTTGTTGACAAACATAAATTGAAAAAAAGAAATTGAAAATATCTCA
1 TCTCGCAATATGAGTTGATTTT-TTGA-AAACATAAATTGAAAAAAAGAAATTGAAAATACCTCA
*
91436105 GCGTGT-CCTGAGGCTGAACTCACC
64 GCGTGTGCCTGAGGCTCAACTCACC
* * *
91436129 TCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAACAGAATTTTAAAATACCTC
1 TCTCGCAATATGAGTTGATTTTTT-G-AAAACATAAA-TTGAAAAAAAGAAATTGAAAATACCTC
** * *
91436193 AGCGTGTGAGTCAAGGCTCAACTCTCC
63 AGCGTGTGCCT-GAGGCTCAACTCACC
* * * * * * * *
91436220 ACTCGTAATATGAGCTGATTTTTTGAAACACAAAAATTGAAGAACAGAAATGGAAAACACCTCAG
1 TCTCGCAATATGAGTTGATTTTTTGAAA-ACATAAATTGAAAAAAAGAAATTGAAAATACCTCAG
* * *
91436285 C--AT-CTTGAGGTTCAACTCACC
65 CGTGTGCCTGAGGCTCAACTCACC
*
91436306 TCTCGCAATATGAGCTGATTTTTT
1 TCTCGCAATATGAGTTGATTTTTT
91436330 TTTGAAAGAC
Statistics
Matches: 389, Mismatches: 58, Indels: 42
0.80 0.12 0.09
Matches are distributed among these distances:
85 4 0.01
86 39 0.10
87 71 0.18
88 33 0.08
89 78 0.20
90 82 0.21
91 59 0.15
92 2 0.01
93 18 0.05
94 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (88 bp):
TCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAAAAAGAAATTGAAAATACCTCAGC
GTGTGCCTGAGGCTCAACTCACC
Found at i:91436148 original size:179 final size:175
Alignment explanation
Indices: 91435775--91436328 Score: 470
Period size: 177 Copynumber: 3.1 Consensus size: 175
91435765 TTAACTCATT
* * *
91435775 TCTCGCAATATGAATTGACTTTTT--AAAACTAGACA-TT-AAAAACAGAAA-TTGAAAATAGCT
1 TCTCGCAATATGAGTTGA-TTTTTGAAAAAC-A-AAATTTGAAAAACA-AAATTTGAAAATACCT
** * * ** * * *
91435835 CAGCACGTGAGCCAAGGCTCAACTCACTTCTCACAATATGAGTTGA-TTTTT-AAA-ACAAAATT
62 CAGCGTGTGAGTCAAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTTTTGAAACACAAAAAT
* * ** * *
91435897 TGTAAAACAGATTTTGAAAATACCTCGGTATGCGA-CCTGAGGCTCAACTCACC
127 TGAAAAAAAGAAATGGAAAACACCTC---A-GC-ATCCTGAGGCTCAACTCACC
* *
91435950 TCTCGTAATATGAGTTGATTTTT-AAAAGCATAAA-TTGAAAAA-AAAATCAATTGAAAATACCT
1 TCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTTGAAAAACAAAAT---TTGAAAATACCT
* * * * * *
91436012 CGGCGTGTGA-TCTGAGGCTCAACTCCCCTCTCGCATTATGAGTTGATTTTGTTGACAA-ACATA
62 CAGCGTGTGAGTC-AAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTT-TTGA-AACACAAA
* * * * *
91436075 AATTGAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACC
124 AATTGAAAAAAAGAAATGGAAAACACCTCAGC--ATCCTGAGGCTCAACTCACC
* *
91436129 TCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAATTTTAAAATACCTCA
1 TCTCGCAATATGAGTTGA-TTTTT-GAAAAACAAAATTTGAAAAACAAAATTTGAAAATACCTCA
* *
91436194 GCGTGTGAGTCAAGGCTCAACTCTCCACTCGTAATATGAGCTGATTTTTTGAAACACAAAAATTG
64 GCGTGTGAGTCAAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTTTTGAAACACAAAAATTG
* * * *
91436259 AAGAACAGAAATGGAAAACACCTCAGCATCTTGAGGTTCAACTCACC
129 AAAAAAAGAAATGGAAAACACCTCAGCATCCTGAGGCTCAACTCACC
*
91436306 TCTCGCAATATGAGCTGATTTTT
1 TCTCGCAATATGAGTTGATTTTT
91436329 TTTTGAAAGA
Statistics
Matches: 312, Mismatches: 47, Indels: 39
0.78 0.12 0.10
Matches are distributed among these distances:
173 3 0.01
174 11 0.04
175 25 0.08
176 6 0.02
177 81 0.26
178 6 0.02
179 71 0.23
180 57 0.18
181 34 0.11
182 14 0.04
183 4 0.01
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (175 bp):
TCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTTGAAAAACAAAATTTGAAAATACCTCAGC
GTGTGAGTCAAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTTTTGAAACACAAAAATTGAA
AAAAAGAAATGGAAAACACCTCAGCATCCTGAGGCTCAACTCACC
Found at i:91436333 original size:180 final size:178
Alignment explanation
Indices: 91435775--91436351 Score: 466
Period size: 179 Copynumber: 3.2 Consensus size: 178
91435765 TTAACTCATT
** * * * * *
91435775 TCTCGCAATATGAATTGACTTTTT--AAAACTAGACATT-AAAAACAGAAATTGAAAATAGCTCA
1 TCTCGCAATATGAGCTGATTTTTTGAAAAAC-AGAAATTGAAAAACAGAATTTTAAAATACCTCA
** * * * ** * * *
91435837 GCACGTGAGCCAAGGCTCAACTCACTTCTCACAATATGAGTTGA-TTT-TT-A-AAACAAAATTT
65 GCGTGTGATCTAAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTTGTTGACAAACAAAAATT
* * ** * *
91435898 GTAAAACAGATTTTGAAAATACCTCGGTATGCGA-CCTGAGGCTCAACTCACC
130 GAAAAAAAGAAATGGAAAACACCTC---A-GCGATCCTGAGGCTCAACTCACC
* * * * * *
91435950 TCTCGTAATATGAGTTGA-TTTTT-AAAAGCATAAATTGAAAAA-AAAATCAATTGAAAATACCT
1 TCTCGCAATATGAGCTGATTTTTTGAAAAACAGAAATTGAAAAACAGAAT---TTTAAAATACCT
* * * * * *
91436012 CGGCGTGTGATCTGAGGCTCAACTCCCCTCTCGCATTATGAGTTGATTTTGTTGACAAACATAAA
63 CAGCGTGTGATCTAAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTTGTTGACAAACAAAAA
* * * * *
91436077 TTGAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACC
128 TTGAAAAAAAGAAATGGAAAACACCTCAGCG-ATCCTGAGGCTCAACTCACC
*
91436129 TCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAACAGAATTTTAAAATACCTC
1 TCTCGCAATATGAGCTGATTTTTT-GAAAAACAGAAA-TTGAAAAACAGAATTTTAAAATACCTC
* *
91436193 AGCGTGTGAGTC-AAGGCTCAACTCTCCACTCGTAATATGAGCTGATTTT-TTGA-AACACAAAA
64 AGCGTGTGA-TCTAAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTTGTTGACAA-ACAAAA
* * * *
91436255 ATTGAAGAACAGAAATGGAAAACACCTCAGC-ATCTTGAGGTTCAACTCACC
127 ATTGAAAAAAAGAAATGGAAAACACCTCAGCGATCCTGAGGCTCAACTCACC
*
91436306 TCTCGCAATATGAGCTGATTTTTTTTTGAAAGACAGAAATTGAAAA
1 TCTCGCAATATGAGCTGA---TTTTTTGAAAAACAGAAATTGAAAA
91436352 TACCTTAACG
Statistics
Matches: 330, Mismatches: 50, Indels: 40
0.79 0.12 0.10
Matches are distributed among these distances:
174 13 0.04
175 25 0.08
177 83 0.25
178 6 0.02
179 85 0.26
180 66 0.20
181 34 0.10
182 14 0.04
183 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (178 bp):
TCTCGCAATATGAGCTGATTTTTTGAAAAACAGAAATTGAAAAACAGAATTTTAAAATACCTCAG
CGTGTGATCTAAGGCTCAACTCCCCACTCGCAATATGAGCTGATTTTGTTGACAAACAAAAATTG
AAAAAAAGAAATGGAAAACACCTCAGCGATCCTGAGGCTCAACTCACC
Found at i:91436666 original size:73 final size:74
Alignment explanation
Indices: 91436262--91436865 Score: 731
Period size: 73 Copynumber: 8.2 Consensus size: 74
91436252 AAAATTGAAG
* * ** * *
91436262 AACAGAAATGGAAAACACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
91436325 TTTTTTTTGA-A
65 --TTTTTTGACA
*
91436336 AGACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
91436401 -TTTTTGACA
65 TTTTTTGACA
* * * * *
91436410 AACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
91436473 TTTTTCAAA
66 TTTTTGACA
* *
91436482 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
91436547 TTTTTTA-A
66 TTTTTGACA
* * *
91436555 AGATAGAAATTGGAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
91436620 -TTTTTGACA
65 TTTTTTGACA
* * * * * * *
91436629 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGTAATATGTGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
91436694 TTTTTTGAAA
65 TTTTTTGACA
* *
91436704 AATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
91436768 GTTTTGACA
66 TTTTTGACA
* * * * *
91436777 AACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
91436842 TTTTTTAGA
66 TTTTTGACA
* *
91436851 AACATAAATTAAAAA
1 AACAGAAATTGAAAA
91436866 AAGGAAAATT
Statistics
Matches: 456, Mismatches: 62, Indels: 24
0.84 0.11 0.04
Matches are distributed among these distances:
71 37 0.08
72 27 0.06
73 150 0.33
74 125 0.27
75 80 0.18
76 1 0.00
77 36 0.08
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGACA
Found at i:91436721 original size:148 final size:147
Alignment explanation
Indices: 91436256--91437037 Score: 774
Period size: 148 Copynumber: 5.1 Consensus size: 147
91436246 AACACAAAAA
* * * * ** *
91436256 TTGAAGAACAGAAATGGAAAACACCTC-AGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGAAAAATAGAAATTGAAAATACCTCAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
91436320 CTGATTTTTTTTTGA-AAGACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCT
66 TTGA----TTTTTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
91436384 CTCGCAATATGAGTTGA--TTT
126 CTCGCAATATGAGTTGATTTTT
* * * * * * *
91436404 TTGACAAACAAAAATTGAAATTACCTC-AGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAG
1 TTGAAAAATAGAAATTGAAAATACCTCAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
91436468 TTGATTTTTTCAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCG
66 TTGA-TTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
*
91436533 CAATATGAGCTGATTTTT
130 CAATATGAGTTGATTTTT
* *
91436551 TT-AAAGATAGAAATTGGAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAATAGAAATTGAAAATACCTCAA-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
91436615 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCG
65 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
* *
91436680 TAATATGTGTTGATTTTT
130 CAATATGAGTTGATTTTT
*
91436698 TTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAATAGAAATTGAAAATACCTCAA-GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
91436763 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCG
65 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
91436828 CAATATGAGTTGATTTTT
130 CAATATGAGTTGATTTTT
* *
91436846 TTAGAAACATAAATTAAAAAAAGGAAAATTGAAAATACCTCAGGGTGTCCTGAGGCTCAACTCAC
1 TT-G--A-A-AAA-T------A-G-AAATTGAAAATACCTCA-AGTGTCTTGAGGCTCAACTCAC
** *
91436911 CTCTCGCAATATGAGTTGATTCGAAAAGCAAAATTTGTA-AGGCAGAAATTGAAAATACCTCAAC
51 CTCTCGCAATATGAGTTGATT------------TTTG-ACAAACAAAAATTGAAAATACCTCAAC
* *
91436975 GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
103 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
91437018 TTGAAAAACAGAAATT-AAAA
1 TTGAAAAATAGAAATTGAAAA
91437038 GCAGAAATTA
Statistics
Matches: 544, Mismatches: 56, Indels: 59
0.83 0.08 0.09
Matches are distributed among these distances:
145 67 0.12
146 20 0.04
147 75 0.14
148 233 0.43
149 1 0.00
151 1 0.00
152 1 0.00
153 3 0.01
154 1 0.00
157 4 0.01
158 5 0.01
159 1 0.00
160 2 0.00
161 1 0.00
162 56 0.10
167 3 0.01
168 1 0.00
169 1 0.00
171 1 0.00
172 5 0.01
174 61 0.11
175 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (147 bp):
TTGAAAAATAGAAATTGAAAATACCTCAAGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTT
Found at i:91436991 original size:85 final size:85
Alignment explanation
Indices: 91436781--91437016 Score: 289
Period size: 85 Copynumber: 2.7 Consensus size: 85
91436771 TTGACAAACA
* * *
91436781 AAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TT
**
91436846 TTAGAAACATAAATTAAAAAAAGG
63 CGAGAAACATAAATT-AAAAAAGG
*
91436870 AAAATTGAAAATACCTCAGGGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCGA
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCGA
***
91436935 -AAAGCA-AAATT-TGTAAGG
66 GAAA-CATAAATTAAAAAAGG
* *
91436953 CAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 -A-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
91437017 TTTGAAAAAC
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
83 4 0.03
84 1 0.01
85 66 0.50
86 5 0.04
89 56 0.42
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (85 bp):
AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCGA
GAAACATAAATTAAAAAAGG
Found at i:91440877 original size:84 final size:83
Alignment explanation
Indices: 91440774--91441880 Score: 418
Period size: 73 Copynumber: 13.7 Consensus size: 83
91440764 TTTATGCTTT
* * * *
91440774 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGT-ATTTCAATTTC
91440839 TGCTTTAATTTCT-TTTTTC
65 TGCTTTAATTT-TGTTTTTC
**
91440858 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTA-TTTCAATTTC
* *
91440922 TGCCTTACAAATTTTGCTTTTC
65 TG-CTT--TAATTTTGTTTTTC
*
91440944 --GAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-CCTGAGGTATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCC-GAGGTATTTCAA--TT
** **
91441006 TCCTTTTTTTAATTTATGTTTTAA
63 T-C-TGCTTTAATTT-TGTTTTTC
* * *
91441030 AAAAAT-AACTCATATTGCGAGAAGTGAGTTGAGCCTCATGACACGCTGAGG---TT-AA-TT-T
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTCAATTTCT
*
91441088 -C---AATTTTTGTTTGTC
66 GCTTTAA-TTTTGTTTTTC
* * * **
91441103 AAAACTCAACTCATATTGC-AAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA-TT---TTT-T
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTCAATTTCT
*
91441162 -C---AATTTCTATTTTTC
66 GCTTTAATTT-TGTTTTTC
* * * *
91441177 AAAAAAATCAACACATATTACGATAGGATGAGTTGAGCCTCAGGACACGCTGAGG----T-AA-T
1 --AAAAATCAACTCATATTGCGAGAGG-TGAGTTGAGCCTCAGGACACGCCGAGGTATTTCAATT
* *
91441236 T-T-C---ATTTTTGTTTGTC
63 TCTGCTTTAATTTTGTTTTTC
* ***
91441252 AAAAATCAACTCGATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTCCAATTT
1 AAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTT-CAATTT
*
91441317 CT-ATCTTAA-----------
64 CTGCT-TTAATTTTGTTTTTC
* * * **
91441326 AAAAATCAGCTCATAATTGCGAGAGGTTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAATCAACTCAT-ATTGCGAGAGG-TGAGTTGAGCCTCAGGACACGCCGAGGTA-TTTCAATT
*
91441391 TCTG---T--TTTTG-----A
63 TCTGCTTTAATTTTGTTTTTC
* * * *
91441402 AAAAATCAACTCATATTTGCGATAGGTGAGTTGAACCTCAAGA-ACGCTGAGG----T-AA-TT-
1 AAAAATCAACTCATA-TTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTCAATTTC
*
91441459 T-C---AATTTTTGTTTGTC
65 TGCTTTAA-TTTTGTTTTTC
* ***
91441475 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTA-TTTCAATTTC
* *****
91441540 TG---T--CTTT-TCAAAA
65 TGCTTTAATTTTGTTTTTC
* * * * * * *
91441553 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGATGCTGAGGTGTTTTCCCATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGT-ATTT-CAATTT
* *
91441616 CTGTTCTTCAATTTTTGTGTTTC
64 CTG--CTTTAA-TTTTGTTTTTC
* * * * * *** * *
91441639 AAAAAATCAGCTCATATTAACGAGTGGAGAGTTGCGCCTTGACTCCACACGCTGAGGTATTTTAA
1 -AAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCC-T--CAGGACACGCCGAGGTA-TTTCA
* * *
91441704 AATTCTGTTTTTCAAATTTTTTTTTTC
60 ATTTCTG-CTTT--AATTTTGTTTTTC
* * *
91441731 AAAAATCAAC-CACTATTGCGAGAGGTGAG-TCAGCCTCA-GACACGCTGAGATATTTTCAATTT
1 AAAAATCAACTCA-TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTA-TTTCAATTT
** *
91441793 CTTTTTTTCAATTTATGTTTGTC
64 C-TGCTTT-AATTT-TGTTTTTC
* * *
91441816 AACAAAATCAACTCATAATGCGAGAGGGGAGTTGAGCCTTCA-GATCACACCGAGGTATTTCAAT
1 -A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGA-CACGCCGAGGTATTTCAAT
91441880 T
62 T
91441881 GATTTTTTTA
Statistics
Matches: 805, Mismatches: 117, Indels: 197
0.72 0.10 0.18
Matches are distributed among these distances:
66 1 0.00
67 2 0.00
68 7 0.01
69 1 0.00
72 26 0.03
73 102 0.13
74 68 0.08
75 62 0.08
76 60 0.07
77 14 0.02
78 64 0.08
79 7 0.01
80 6 0.01
81 2 0.00
82 1 0.00
83 22 0.03
84 93 0.12
85 50 0.06
86 22 0.03
87 83 0.10
88 27 0.03
89 18 0.02
90 20 0.02
91 17 0.02
92 15 0.02
93 15 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (83 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTCAATTTCT
GCTTTAATTTTGTTTTTC
Found at i:91441046 original size:171 final size:168
Alignment explanation
Indices: 91440666--91441093 Score: 434
Period size: 171 Copynumber: 2.5 Consensus size: 168
91440656 TATTTTGATG
* * * * *
91440666 TTTTTATTTCTATCTTTCAAAAAAACAACTTA-ATTGCGAGAGGTGAGTTGGGCCTCAGGTCACA
1 TTTTTAATT-TAT-TTTTAAAAAAATAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---CA
* *** *
91440730 CGCTAAGGTATTTTCAATTTTCGTTTTTTTTCAATTTATGCTTTAAAAATCAACTCATATTGCGA
61 CGCTGAGGTATTTTCAA-TTTCG-TGCCTTACAATTTATGCTTTAAAAATCAACTCATATTGCGA
* * *
91440795 GAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTAATTTTAATTTCT
124 GAGGTGAGCTGAGCCTCAGGACACGCCGAGGTAATTTCAATTTCT
** * ** *
91440840 GCTTTAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGTT
1 TTTTTAATTTATTTTTAAAAAAAT-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCT
***
91440905 GAGGTATTTTCAATTTC-TGCCTTACAAATTT-TGCTTTTCGAATCAACTCATATTGCGAGAGGT
65 GAGGTATTTTCAATTTCGTGCCTTAC-AATTTATGCTTTAAAAATCAACTCATATTGCGAGAGGT
*
91440968 GAGTTGAGCCTCAGGACAC-CCTGAGGT-ATTTCAATTTTTCCTT
129 GAGCTGAGCCTCAGGACACGCC-GAGGTAATTTCAA--TTT-C-T
* *
91441011 TTTTTAATTTATGTTTTAAAAAAATAACTCATATTGCGAGAAGTGAGTTGAGCCTCATGACACGC
1 TTTTTAATTTAT-TTTTAAAAAAATAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GGCACGC
*
91441076 TGAGGTTAATTTCAATTT
64 TGAGG-TATTTTCAATTT
91441094 TTGTTTGTCA
Statistics
Matches: 211, Mismatches: 32, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
167 8 0.04
168 54 0.26
169 8 0.04
170 5 0.02
171 58 0.27
172 28 0.13
173 18 0.09
174 32 0.15
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (168 bp):
TTTTTAATTTATTTTTAAAAAAATAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACGCTG
AGGTATTTTCAATTTCGTGCCTTACAATTTATGCTTTAAAAATCAACTCATATTGCGAGAGGTGA
GCTGAGCCTCAGGACACGCCGAGGTAATTTCAATTTCT
Found at i:91441179 original size:74 final size:73
Alignment explanation
Indices: 91441011--91441594 Score: 645
Period size: 73 Copynumber: 7.8 Consensus size: 73
91441001 ATTTTTCCTT
* * ** * *
91441011 TTTTTAATTTATGTTTTAAAAAAAT-AACTCATATTGCGAGAAGTGAGTTGAGCCTCATGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
91441075 CTGAGGTTA
66 TTGAGG-TA
* * * * *
91441084 ATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGC-AAAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
91441148 TTGAGGTA
66 TTGAGGTA
* * * * *
91441156 TTTTTTCAATTTCTATTTTTCAAAAAAATCAACACATATTACGATAGGATGAGTTGAGCCTCAGG
1 --TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGG-TGAGTTGAGCCTCAAG
*
91441221 ACACGCTGAGGTA
61 ACACGTTGAGGTA
* * *
91441234 ATTTC-ATTTTTGTTTGTCAAAAATCAACTCGATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
91441298 ATTGAGGTA
65 GTTGAGGTA
* * * ** * *
91441307 TTTCCAATTTCTATCTTAAAAAAATCAGCTCATAATTGCGAGAGGTTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCAT-ATTGCGAGAGG-TGAGTTGAGCCTCAAGACA
91441372 CGTTGAGGTA
64 CGTTGAGGTA
* * *
91441382 TTTTCAATTTCTGTTTTTGAAAAAATCAACTCATATTTGCGATAGGTGAGTTGAACCTCAAGA-A
1 TTTTCAATTTCTGTTTTT-CAAAAATCAACTCATA-TTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
91441446 CGCTGAGGTA
64 CGTTGAGGTA
* * *
91441456 ATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
*
91441521 TTAAGGTA
66 TTGAGGTA
* *
91441529 TTTTCAATTTCTGTCTTTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG
1 TTTTCAATTTCTGT-TTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
91441594 A
61 A
91441595 TGCTGAGGTG
Statistics
Matches: 430, Mismatches: 62, Indels: 33
0.82 0.12 0.06
Matches are distributed among these distances:
72 27 0.06
73 124 0.29
74 96 0.22
75 69 0.16
76 43 0.10
77 4 0.01
78 67 0.16
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
TTGAGGTA
Found at i:91441444 original size:150 final size:145
Alignment explanation
Indices: 91441028--91441594 Score: 631
Period size: 150 Copynumber: 3.8 Consensus size: 145
91441018 TTTATGTTTT
* *
91441028 AAAAAAAT-AACTCATATTGCGAGAAGTGAGTTGAGCCTCATGACACGCTGAGGTTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG-TAATTTCAAT
* * * * *
91441092 TTTTGTTTGTCAAAACTCAACTCATATTGC-AAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
65 TTCTGTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA
91441156 TTTTTTCAATTTCTATTTTTC
130 ---TTTCAATTTCTA--TTTC
* * * *
91441177 AAAAAAATCAACACATATTACGATAGGATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC-AT
1 AAAAAAATCAACTCATATTGCGAGAGG-TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
* * * *
91441241 TTTTGTTTGTCAAAAATCAACTCGATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGT
65 TTCTGTTTGTAAAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGT
91441306 ATTTCCAATTTCTATCTT-
129 ATTT-CAATTTCTAT-TTC
* * * *
91441324 AAAAAAATCAGCTCATAATTGCGAGAGGTTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCAT-ATTGCGAGAGG-TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
* * *
91441389 TTTCTGTTTTTGAAAAAATCAACTCATATTTGCGATAGGTGAGTTGAACCTCAAGA-ACGCTGAG
64 TTTCTGTTTGT-AAAAAATCAACTCATA-TTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAG
* * *
91441453 GTAATTTCAATTTTTGTTTG
127 GT-ATTTCAATTTCTATTTC
** * * *
91441473 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
* *
91441538 TCTGTCTTTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
66 TCTGT-TTGT----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
91441595 TGCTGAGGTG
Statistics
Matches: 368, Mismatches: 34, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
147 56 0.15
148 61 0.17
149 83 0.23
150 95 0.26
151 73 0.20
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (145 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
TCTGTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
TTCAATTTCTATTTC
Found at i:91441513 original size:222 final size:222
Alignment explanation
Indices: 91441030--91441594 Score: 768
Period size: 223 Copynumber: 2.5 Consensus size: 222
91441020 TATGTTTTAA
* * *
91441030 AAAAAT-AACTCATATTGCGAGAAGTGAGTTGAGCCTCATGACACGCTGAGGTTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-T-ATTTCAATTT
* *** * * * *
91441094 TTGT-TTGTCAAAACTCAACTCATATTGC-AAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
64 CTGTCTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTA-
* *
91441157 TTTTTCAATTTCTATTTTTCAAAAAAATCAACACATATTACGATAGGATGAGTTGAGCCTCAGGA
128 TTTTTCAATTTCTATTTTTCAAAAAAATCAACACATATTACGATAGGATGAGTTGAACCTCAAGA
91441222 CACGCTGAGGTAATTTCATTTTTGTTTGTC
193 CACGCTGAGGTAATTTCATTTTTGTTTGTC
*
91441252 AAAAATCAACTCGATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTCCAATTT
1 AAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT-CAATTT
*
91441317 CTATCTT-AAAAAAATCAGCTCATAATTGCGAGAGGTTGAGTTGAACCTCAAGACACGTTGAGGT
64 CTGTCTTAAAAAAAATCAGCTCAT-ATTGCGAGAGG-TGAGTTGAACCTCAAGACACGTTGAGGT
* * * *
91441381 A-TTTTCAATTTCTGTTTTT-GAAAAAATCAACTCATATTTGCGATAGG-TGAGTTGAACCTCAA
127 ATTTTTCAATTTCTATTTTTCAAAAAAATCAACACATA-TTACGATAGGATGAGTTGAACCTCAA
91441443 GA-ACGCTGAGGTAATTTCAATTTTTGTTTGTC
191 GACACGCTGAGGTAATTTC-ATTTTTGTTTGTC
*
91441475 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCAATTTC
91441540 TGTCTTTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
65 TGTC--TT--AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
91441595 TGCTGAGGTG
Statistics
Matches: 307, Mismatches: 21, Indels: 27
0.86 0.06 0.08
Matches are distributed among these distances:
222 76 0.25
223 84 0.27
224 71 0.23
225 21 0.07
226 39 0.13
227 16 0.05
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (222 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCT
GTCTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTT
TTCAATTTCTATTTTTCAAAAAAATCAACACATATTACGATAGGATGAGTTGAACCTCAAGACAC
GCTGAGGTAATTTCATTTTTGTTTGTC
Found at i:91442804 original size:30 final size:30
Alignment explanation
Indices: 91442769--91442852 Score: 125
Period size: 31 Copynumber: 2.8 Consensus size: 30
91442759 GCCACCACCA
91442769 ACTCCACTAGCCACACTTGGCTCCCCAACT
1 ACTCCACTAGCCACACTTGGCTCCCCAACT
* *
91442799 ACTCCACTAGCCACACTTGGCCTCACCACCT
1 ACTCCACTAGCCACACTTGG-CTCCCCAACT
*
91442830 ACTCCATTAGCCACACTT-GCTCC
1 ACTCCACTAGCCACACTTGGCTCC
91442853 ACCACCACTT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
29 3 0.06
30 21 0.43
31 25 0.51
ACGTcount: A:0.23, C:0.46, G:0.10, T:0.21
Consensus pattern (30 bp):
ACTCCACTAGCCACACTTGGCTCCCCAACT
Found at i:91442858 original size:30 final size:31
Alignment explanation
Indices: 91442760--91442858 Score: 141
Period size: 30 Copynumber: 3.3 Consensus size: 31
91442750 CTAGCCTTTG
*
91442760 CCACCACCAACTCCACTAGCCACACTTGGCT
1 CCACCACCTACTCCACTAGCCACACTTGGCT
*
91442791 CC-CCAACTACTCCACTAGCCACACTTGGC-
1 CCACCACCTACTCCACTAGCCACACTTGGCT
*
91442820 CTCACCACCTACTCCATTAGCCACACTT-GCT
1 C-CACCACCTACTCCACTAGCCACACTTGGCT
91442851 CCACCACC
1 CCACCACC
91442859 ACTTGTACCT
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
29 1 0.02
30 35 0.57
31 25 0.41
ACGTcount: A:0.24, C:0.49, G:0.08, T:0.18
Consensus pattern (31 bp):
CCACCACCTACTCCACTAGCCACACTTGGCT
Found at i:91443527 original size:25 final size:24
Alignment explanation
Indices: 91443477--91443539 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
91443467 CATGTTATCT
*
91443477 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
91443503 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
91443528 TACATATTTTTT
1 TATGTATTTTTT
91443540 TTATATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:91444781 original size:25 final size:25
Alignment explanation
Indices: 91444742--91444796 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
91444732 ATAGGCTCAT
*
91444742 CTCGCGTCGGCGAGCCTCCACATAA
1 CTCGCGTCGACGAGCCTCCACATAA
*
91444767 CTCGCGTCGATGAGCCTCCACATAA
1 CTCGCGTCGACGAGCCTCCACATAA
91444792 CTCGC
1 CTCGC
91444797 CCCCACATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.20, C:0.40, G:0.22, T:0.18
Consensus pattern (25 bp):
CTCGCGTCGACGAGCCTCCACATAA
Found at i:91448376 original size:83 final size:84
Alignment explanation
Indices: 91448200--91448583 Score: 407
Period size: 86 Copynumber: 4.6 Consensus size: 84
91448190 TACTTGTTCC
* *
91448200 CAGCGTGTCCTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTAGAAA-CA-AAATT-
1 CAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTGA-AAAGCAGAAATTG
91448261 ----G-A-AAATTGAAATACCT
63 AAAAGCAGAAATTGAAATACCT
*
91448277 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTGAAAAGCA-AAATTTGAA
1 CAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGCAGAAA-TTGAA
*
91448340 AGGCAGAAATTGAAATACCT
65 AAGCAGAAATTGAAATACCT
*
91448360 CAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-A
1 CAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTGAAAAGCAGAAATTGA
*
91448424 AAAGCAGAAATTAAAAATACCT
64 AAAGCAGAAATT-GAAATACCT
* * * * *
91448446 CGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGCATAAATTGA
1 CAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTGAAAAGCAGAAATTGA
**
91448511 AAAAAACGAAAATTGAAAATACCT
64 AAAGCA-G-AAATTG-AAATACCT
* * *
91448535 TAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
91448584 TTTGAAAGAT
Statistics
Matches: 266, Mismatches: 20, Indels: 30
0.84 0.06 0.09
Matches are distributed among these distances:
74 3 0.01
75 8 0.03
76 2 0.01
77 24 0.09
78 19 0.07
81 1 0.00
82 1 0.00
83 57 0.21
85 12 0.05
86 76 0.29
87 8 0.03
88 1 0.00
89 18 0.07
91 36 0.14
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (84 bp):
CAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGCAGAAATTGAAA
AGCAGAAATTGAAATACCT
Found at i:91448431 original size:13 final size:13
Alignment explanation
Indices: 91448410--91448440 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
91448400 TTGATTTTTG
91448410 AAAAACAGAAATT
1 AAAAACAGAAATT
*
91448423 AAAAGCAGAAATT
1 AAAAACAGAAATT
91448436 AAAAA
1 AAAAA
91448441 TACCTCGGCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:91461525 original size:15 final size:16
Alignment explanation
Indices: 91461497--91461537 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
91461487 AGAAACTCTC
* *
91461497 CCACTACGACGGA-TT
1 CCACTATGATGGATTT
91461512 CCACTATGATGGATTT
1 CCACTATGATGGATTT
91461528 CC-CTATGATG
1 CCACTATGATG
91461538 TTGATCGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (16 bp):
CCACTATGATGGATTT
Found at i:91462151 original size:15 final size:15
Alignment explanation
Indices: 91462131--91462162 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
91462121 TAGACCGAAG
91462131 ATTATTTATGGATAA
1 ATTATTTATGGATAA
91462146 ATTATTTATGGATAA
1 ATTATTTATGGATAA
91462161 AT
1 AT
91462163 CTAATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (15 bp):
ATTATTTATGGATAA
Found at i:91466329 original size:19 final size:20
Alignment explanation
Indices: 91466307--91466345 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
91466297 CTTAATTAAT
*
91466307 TTGATT-AATTTAATTTTTC
1 TTGATTAAAATTAATTTTTC
91466326 TTGATTAAAATTAATTTTTC
1 TTGATTAAAATTAATTTTTC
91466346 AAAAATCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TTGATTAAAATTAATTTTTC
Found at i:91468927 original size:35 final size:35
Alignment explanation
Indices: 91468876--91468943 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
91468866 ACAATGGGAA
* *
91468876 AAGCAAAGCTAGTAGTCACGCCTATGGTAAGCTAC
1 AAGCAAAGCCAATAGTCACGCCTATGGTAAGCTAC
91468911 AAGCAAAGCCAATAGTCACGCCTATGGTAAGCT
1 AAGCAAAGCCAATAGTCACGCCTATGGTAAGCT
91468944 CATCTACATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (35 bp):
AAGCAAAGCCAATAGTCACGCCTATGGTAAGCTAC
Found at i:91471363 original size:17 final size:19
Alignment explanation
Indices: 91471343--91471385 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
91471333 GATTTTTTCT
91471343 TTTTAATATTTTT-TAA-A
1 TTTTAATATTTTTATAATA
*
91471360 TTTTAA-ATTTTTATAATT
1 TTTTAATATTTTTATAATA
91471378 TTTTAATA
1 TTTTAATA
91471386 CTAATAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 9 0.41
18 6 0.27
19 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTAATATTTTTATAATA
Found at i:91481816 original size:91 final size:90
Alignment explanation
Indices: 91481662--91481837 Score: 280
Period size: 91 Copynumber: 1.9 Consensus size: 90
91481652 TTGGCCTAGC
* * *
91481662 GGTATTGGGTGTTCATTCTAAAACCCATGTCATTTGTTCAAATCATAAGAGCAATTTTATTTATT
1 GGTATTGGGTGTTCATTATAAAACCCATGTCATTTGTTCAAATCATAAGAACAATTTTATTTATG
91481727 GTGTTTAAGTTGACAATTATCTAAG
66 GTGTTTAAGTTGACAATTATCTAAG
* ** *
91481752 GGTATTGGGTGTTCATTATAAAAACTCATGTCATTTGTTCAAATGGTAGGAACAATTTTATTTAT
1 GGTATTGGGTGTTCATTAT-AAAACCCATGTCATTTGTTCAAATCATAAGAACAATTTTATTTAT
91481817 GGTGTTTAAGTTGACAATTAT
65 GGTGTTTAAGTTGACAATTAT
91481838 GTGGACCTGT
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
90 18 0.23
91 60 0.77
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (90 bp):
GGTATTGGGTGTTCATTATAAAACCCATGTCATTTGTTCAAATCATAAGAACAATTTTATTTATG
GTGTTTAAGTTGACAATTATCTAAG
Found at i:91490299 original size:11 final size:10
Alignment explanation
Indices: 91490280--91490309 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
91490270 GTATACATAG
91490280 TTTTTTTTAT
1 TTTTTTTTAT
91490290 TTTATTTTTAT
1 TTT-TTTTTAT
91490301 TTTTTTTTA
1 TTTTTTTTA
91490310 AGAACAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:91491669 original size:22 final size:22
Alignment explanation
Indices: 91491528--91491670 Score: 92
Period size: 22 Copynumber: 6.0 Consensus size: 22
91491518 TGAAAAGTGT
* *
91491528 ATACATAATAATACTAAAATAT
1 ATACATAATAATATTAAAATAA
91491550 ATACATAAT-ATATATAAAATGAA
1 ATACATAATAATAT-TAAAAT-AA
* *
91491573 CATATACAATATATATTATAAATATTA
1 -ATACATAATA-ATATTA-AAATA--A
* *
91491600 ATAACATAAAAATA-TATTAATAA
1 AT-ACATAATAATATTA-AAATAA
**
91491623 ATATGTACATATATATTGAAAATAA
1 ATACATA-ATA-ATATT-AAAATAA
91491648 ATACATAATAATATTAAAATAA
1 ATACATAATAATATTAAAATAA
91491670 A
1 A
91491671 ATAATAAGTG
Statistics
Matches: 94, Mismatches: 14, Indels: 26
0.70 0.10 0.19
Matches are distributed among these distances:
21 3 0.03
22 26 0.28
23 11 0.12
24 13 0.14
25 21 0.22
26 14 0.15
27 6 0.06
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.34
Consensus pattern (22 bp):
ATACATAATAATATTAAAATAA
Found at i:91491731 original size:18 final size:19
Alignment explanation
Indices: 91491710--91491755 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
91491700 GTATGATAAT
91491710 AAATATA-ATGATATACAA
1 AAATATATATGATATACAA
* *
91491728 AAATA-ATATTATATATAA
1 AAATATATATGATATACAA
91491746 AAATATATAT
1 AAATATATAT
91491756 ACACGTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.04
18 19 0.79
19 4 0.17
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
AAATATATATGATATACAA
Found at i:91491946 original size:21 final size:20
Alignment explanation
Indices: 91491921--91491969 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
91491911 ATAGTATAAG
91491921 AAATATATACTAATAACAT-TA
1 AAATATATAC--ATAACATATA
* *
91491942 AAATACATACATAATATATA
1 AAATATATACATAACATATA
91491962 AAATATAT
1 AAATATAT
91491970 TTATATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATATATACATAACATATA
Found at i:91492073 original size:19 final size:19
Alignment explanation
Indices: 91492049--91492087 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
91492039 TATAAATAAT
*
91492049 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
91492068 AATGATATTAGAAATATAC
1 AATGATATTAGAAATATAC
91492087 A
1 A
91492088 TAAAATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:91492143 original size:22 final size:23
Alignment explanation
Indices: 91492117--91492162 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
91492107 AAGAACTAAT
91492117 AATAT-TAAAACATATACATAAC
1 AATATGTAAAACATATACATAAC
***
91492139 AATATGTAAATTGTATACATAAC
1 AATATGTAAAACATATACATAAC
91492162 A
1 A
91492163 TAGTTATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.30
Consensus pattern (23 bp):
AATATGTAAAACATATACATAAC
Found at i:91494188 original size:87 final size:87
Alignment explanation
Indices: 91494090--91494321 Score: 265
Period size: 90 Copynumber: 2.6 Consensus size: 87
91494080 ACGTGAGCCA
* * ** ** **
91494090 AGGCTCAACTCACCTCTCACAATATGAGTTGGTTTTTGAAACT-TAGTTTG-AAAAGCAGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAATATAAATTGAAAAAAAAGAAATT
91494153 AAAAATACCTC-GACATGTGACCC-G
66 AAAAATACCTCAG-C--GTG-CCCTG
*
91494177 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAAAAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTG-AAAATATAAATTG--AAAAAAAAGAA
*
91494242 ATTGAAAATACCTCAGCGTGCCCTG
63 ATTAAAAATACCTCAGCGTGCCCTG
*
91494267 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGACAAATAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGA-AAATATAAATTGAAA
91494322 TTACCTCAGT
Statistics
Matches: 125, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
87 36 0.29
88 7 0.06
89 9 0.07
90 52 0.42
92 20 0.16
93 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAATATAAATTGAAAAAAAAGAAATT
AAAAATACCTCAGCGTGCCCTG
Found at i:91494400 original size:82 final size:78
Alignment explanation
Indices: 91494231--91494613 Score: 392
Period size: 82 Copynumber: 5.0 Consensus size: 78
91494221 ATAAATTGAA
* * * *
91494231 AAAAAAAAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
*
91494294 GTTG---GTTTTT
66 GTTGATTTTTTTT
* * * * * * ** *
91494304 GACAAATAGAAATTGAAATTACCTCAGTGTGTGACCTGAGGCTCAACTTGCCTCTCGTAATACGA
1 AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
91494369 GTTGACCTTTTTTTT
66 GTTGA--TTTTTTTT
* * * *
91494384 AAAAAAAATAGGAATTGAAAATACCTCAGCTTGTGACCTGATGCTCAACTCACCTCTCGCAATAT
1 --AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAC
91494449 GAGTTGATTTTTTTT
64 GAGTTGATTTTTTTT
* * * ** *
91494464 --TAAACAGGAATTGAAAATGCCTCAGCGCGTGAATTGAGGCTCAACTCGCCTCTCGCAATACG-
1 AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
*
91494526 GTTGA---CTTTT
66 GTTGATTTTTTTT
* * *
91494536 AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTTACCTCTCGCAATATGA
1 AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
*
91494601 ATTGATTTTTTTT
66 GTTGATTTTTTTT
91494614 GAAACATAAA
Statistics
Matches: 251, Mismatches: 44, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
72 4 0.02
73 23 0.09
74 53 0.21
75 43 0.17
76 52 0.21
78 4 0.02
80 13 0.05
82 59 0.24
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (78 bp):
AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGA
GTTGATTTTTTTT
Found at i:91494510 original size:76 final size:76
Alignment explanation
Indices: 91494241--91494630 Score: 405
Period size: 76 Copynumber: 5.1 Consensus size: 76
91494231 AAAAAAAAGA
* *
91494241 AATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG--GTTT
1 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
91494302 TTGACAAATAGA
66 TTTA-AAACAGG
* * ** * *
91494314 AATTGAAATTACCTCAGTGTGTGACCTGAGGCTCAACTTGCCTCTCGTAATACGAGTTGACCTTT
1 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
*
91494379 TTTTTAAAAAAAATAGG
64 TTTTT----AAAACAGG
* *
91494396 AATTGAAAATACCTCAGCTTGTGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
91494461 TTTTAAACAGG
66 TTTAAAACAGG
* * ** * * *
91494472 AATTGAAAATGCCTCAGCGCGTGAATTGAGGCTCAACTCGCCTCTCGCAATACG-GTTGA-CTTT
1 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
91494535 TAAAAAACAGG
66 TTTAAAACAGG
* * *
91494546 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTTACCTCTCGCAATATGAATTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* **
91494611 TTTGAAACATA
66 TTTAAAACAGG
91494622 AATTGAAAA
1 AATTGAAAA
91494631 ACATAAATTA
Statistics
Matches: 258, Mismatches: 47, Indels: 21
0.79 0.14 0.06
Matches are distributed among these distances:
73 16 0.06
74 57 0.22
75 43 0.17
76 70 0.27
79 5 0.02
80 8 0.03
82 58 0.22
83 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (76 bp):
AATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTTAAAACAGG
Found at i:91494574 original size:232 final size:238
Alignment explanation
Indices: 91494265--91494700 Score: 557
Period size: 232 Copynumber: 1.8 Consensus size: 238
91494255 CAGCGTGCCC
* ** * * * *
91494265 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGACAAATAGAAATTGAAATTACCTCA
1 TGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTAAAAAACAGAAATTGAAAATACCTCA
* * * *
91494330 GTGTGTGACCTGAGGCTCAACTTGCCTCTCGTAATACGAGTTGACCTTTTTTTT-AAA-A-AAAA
66 GCGTGTGACCTGAGGCTCAACTTACCTCTCGCAATACGAATTGA--TTTTTTTTGAAACATAAAA
** * *
91494392 T-AGGA-AT-TGAAAA-TACCTCAGCT-TGTGACCTGATGCTCAACTCACCTCTCGCAATATGAG
129 TAAAAACATATGAAAATTACCTCAG-TGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAG
91494452 TTGATTTTTTTTTAAACAGGAATTGAAAATGCCTCAGCGCGTGAAT
193 TTGATTTTTTTTTAAACAGGAATTGAAAATGCCTCAGCGCGTGAAT
* *
91494498 TGAGGCTCAACTCGCCTCTCGCAATACG-GTTGACTTTTAAAAAACAGGAATTGAAAATACCTCA
1 TGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTAAAAAACAGAAATTGAAAATACCTCA
* * *
91494562 GCGTGTGACCTGAGGCTTAACTTACCTCTCGCAATATGAATTGATTTTTTTTGAAACATAAATTG
66 GCGTGTGACCTGAGGCTCAACTTACCTCTCGCAATACGAATTGATTTTTTTTGAAACATAAAAT-
* *
91494627 AAAAACATAAATTAAAATTACCTCAGTGTGTGAGCTGAGGCTCAACTCACCTCTCACAATATGAG
130 AAAAACAT--ATGAAAATTACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAG
91494692 TTGATTTTT
193 TTGATTTTT
91494701 GACAAACAGA
Statistics
Matches: 170, Mismatches: 22, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
230 8 0.05
231 3 0.02
232 68 0.40
233 30 0.18
235 2 0.01
236 2 0.01
239 6 0.04
240 51 0.30
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (238 bp):
TGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTAAAAAACAGAAATTGAAAATACCTCA
GCGTGTGACCTGAGGCTCAACTTACCTCTCGCAATACGAATTGATTTTTTTTGAAACATAAAATA
AAAACATATGAAAATTACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
ATTTTTTTTTAAACAGGAATTGAAAATGCCTCAGCGCGTGAAT
Found at i:91494592 original size:150 final size:153
Alignment explanation
Indices: 91494230--91494630 Score: 499
Period size: 150 Copynumber: 2.6 Consensus size: 153
91494220 TATAAATTGA
* *
91494230 AAAAAAAAAGAAATTGAAAATACCTCAGC-GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAAAAAAGGAATTGAAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * * * * *
91494294 GTTG-GTTTTTGACAAATAGAAATTGAAATTACCTCAGTGTGTGACCTGAGGCTCAACTTGCCTC
66 GTTGATTTTTTTTCAAACAGAAATTGAAAATACCTCAGCGCGTGAACTGAGGCTCAACTCGCCTC
*
91494358 TCGTAATACGAGTTGACCTTTTTTTT
131 TCGCAATACGAGTTGACC---TTTTT
*
91494384 AAAAAAAATAGGAATTGAAAATACCTCAGCTTGTGACCTGATGCTCAACTCACCTCTCGCAATAT
1 AAAAAAAA-AGGAATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
91494449 GAGTTGATTTTTTTTTAAACAGGAATTGAAAATGCCTCAGCGCGTGAATTGAGGCTCAACTCGCC
64 GAGTTGATTTTTTTTCAAACAGAAATTGAAAATACCTCAGCGCGTGAACTGAGGCTCAACTCGCC
91494514 TCTCGCAATACG-GTTGA-C-TTTT
129 TCTCGCAATACGAGTTGACCTTTTT
* * *
91494536 -AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTTACCTCTCGCAATATG
1 AAAAAAAAAGGAATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
91494600 AATTGATTTTTTTTGAAACATAAATTGAAAA
65 AGTTGATTTTTTTTCAAACAGAAATTGAAAA
91494631 ACATAAATTA
Statistics
Matches: 217, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
150 80 0.37
151 6 0.03
152 4 0.02
154 8 0.04
155 20 0.09
156 1 0.00
157 42 0.19
158 56 0.26
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (153 bp):
AAAAAAAAAGGAATTGAAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTCAAACAGAAATTGAAAATACCTCAGCGCGTGAACTGAGGCTCAACTCGCCTC
TCGCAATACGAGTTGACCTTTTT
Found at i:91494690 original size:90 final size:90
Alignment explanation
Indices: 91494537--91494700 Score: 240
Period size: 90 Copynumber: 1.8 Consensus size: 90
91494527 TTGACTTTTA
* * * *
91494537 AAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTTACCTCTCGCAATATGAA
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAA
91494602 TTGATTTTTTTTGAAACATAAATTG
66 TTGATTTTTTTTGAAACATAAATTG
* * *
91494627 AAAAACATAAATT-AAAATTACCTCAGTGTGTGAGCTGAGGCTCAACTCACCTCTCACAATATGA
1 AAAAACAGAAATTGAAAA-TACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGA
*
91494691 GTTGATTTTT
65 ATTGATTTTT
91494701 GACAAACAGA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
89 4 0.06
90 61 0.94
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (90 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAA
TTGATTTTTTTTGAAACATAAATTG
Found at i:91494721 original size:90 final size:91
Alignment explanation
Indices: 91494536--91494721 Score: 234
Period size: 90 Copynumber: 2.1 Consensus size: 91
91494526 GTTGACTTTT
* * * *
91494536 AAAAAACAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTTACCTCTCGCAATATGA
1 AAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGA
*** *
91494601 ATTGATTTTTTTTGAAACATAAATTG
66 ATTGATTTTTTGACAAACAGAAATTG
* * *
91494627 -AAAAACATAAATT-AAAATTACCTCAGTGTGTGAGCTGAGGCTCAACTCACCTCTCACAATATG
1 AAAAAACAGAAATTGAAAA-TACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATG
*
91494690 AGTTGA-TTTTTGACAAACAGAAATTG
65 AATTGATTTTTTGACAAACAGAAATTG
91494716 AAAAAA
1 AAAAAA
91494722 AAAGAATTTG
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
89 20 0.25
90 61 0.75
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (91 bp):
AAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGA
ATTGATTTTTTGACAAACAGAAATTG
Found at i:91503008 original size:4 final size:4
Alignment explanation
Indices: 91502999--91503024 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
91502989 ATGTACATGC
91502999 AATG AATG AATG AATG AATG AATG AA
1 AATG AATG AATG AATG AATG AATG AA
91503025 AAAATGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (4 bp):
AATG
Found at i:91503068 original size:38 final size:38
Alignment explanation
Indices: 91503012--91503098 Score: 151
Period size: 38 Copynumber: 2.3 Consensus size: 38
91503002 GAATGAATGA
91503012 ATGAATG-A-ATGAAAAAATGTCAAGTGAATGTTAGTC
1 ATGAATGTATATGAAAAAATGTCAAGTGAATGTTAGTC
*
91503048 ATGAATGTATATGAATAAATGTCAAGTGAATGTTAGTC
1 ATGAATGTATATGAAAAAATGTCAAGTGAATGTTAGTC
91503086 ATGAATGTATATG
1 ATGAATGTATATG
91503099 CAAGAATTTG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 7 0.15
37 1 0.02
38 40 0.83
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (38 bp):
ATGAATGTATATGAAAAAATGTCAAGTGAATGTTAGTC
Found at i:91506999 original size:22 final size:22
Alignment explanation
Indices: 91506858--91507000 Score: 92
Period size: 22 Copynumber: 6.0 Consensus size: 22
91506848 TAAAAAGTGT
* *
91506858 ATACATAATAATACTAAAATAT
1 ATACATAATAATATTAAAATAA
91506880 ATACATAAT-ATATATAAAATGAA
1 ATACATAATAATAT-TAAAAT-AA
* *
91506903 CATATACAATATATATTATAAATATTA
1 -ATACATAATA-ATATTA-AAATA--A
* *
91506930 ATAACATAAAAATA-TATTAATAA
1 AT-ACATAATAATATTA-AAATAA
**
91506953 ATATGTACATATATATTGAAAATAA
1 ATACATA-ATA-ATATT-AAAATAA
91506978 ATACATAATAATATTAAAATAA
1 ATACATAATAATATTAAAATAA
91507000 A
1 A
91507001 ATAATAAGTG
Statistics
Matches: 94, Mismatches: 14, Indels: 26
0.70 0.10 0.19
Matches are distributed among these distances:
21 3 0.03
22 26 0.28
23 11 0.12
24 13 0.14
25 21 0.22
26 14 0.15
27 6 0.06
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.34
Consensus pattern (22 bp):
ATACATAATAATATTAAAATAA
Found at i:91507397 original size:19 final size:19
Alignment explanation
Indices: 91507373--91507411 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
91507363 TATAAATAAT
*
91507373 AATGATGTTAAAAATATAC
1 AATGATATTAAAAATATAC
*
91507392 AATGATATTAGAAATATAC
1 AATGATATTAAAAATATAC
91507411 A
1 A
91507412 TAAAATAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (19 bp):
AATGATATTAAAAATATAC
Found at i:91507467 original size:22 final size:23
Alignment explanation
Indices: 91507441--91507486 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
91507431 AAGAACTAAT
91507441 AATAT-TAAAACATATACATAAC
1 AATATGTAAAACATATACATAAC
***
91507463 AATATGTAAATTGTATACATAAC
1 AATATGTAAAACATATACATAAC
91507486 A
1 A
91507487 TAGTTATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.30
Consensus pattern (23 bp):
AATATGTAAAACATATACATAAC
Found at i:91507657 original size:11 final size:10
Alignment explanation
Indices: 91507597--91507692 Score: 50
Period size: 11 Copynumber: 9.0 Consensus size: 10
91507587 AAAAACTATT
*
91507597 AATAATGATA
1 AATAATAATA
*
91507607 TATAATATATA
1 AATAATA-ATA
* *
91507618 TATAAGTATTA
1 AATAA-TAATA
* *
91507629 AGTAAAAAT-
1 AATAATAATA
91507638 AATAATAATGA
1 AATAATAAT-A
*
91507649 AATACTAATA
1 AATAATAATA
*
91507659 AATAAAAACTA
1 AATAATAA-TA
91507670 TAATAATAATA
1 -AATAATAATA
91507681 ACAGTAATAATA
1 A-A-TAATAATA
91507693 GTATAAATAA
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
9 7 0.11
10 15 0.23
11 26 0.40
12 17 0.26
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.31
Consensus pattern (10 bp):
AATAATAATA
Found at i:91507658 original size:58 final size:51
Alignment explanation
Indices: 91507553--91507659 Score: 115
Period size: 58 Copynumber: 2.0 Consensus size: 51
91507543 TATTAAAAGA
* * * *
91507553 ATATATATATAATATAATATTAAGAAGAATATTAAAAAACTATTAATAATG
1 ATATATATATAATATAATATTAAGAAAAATAATAAAAAAATACTAATAATG
91507604 ATATATAATATATATATAAGTATTAAGTAAAAATAATAATAATGAAATACTAATAA
1 ATATAT-ATATA-ATATAA-TATTAAG-AAAAATAATAA-AA--AAATACTAATAA
91507660 ATAAAAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
51 6 0.13
52 5 0.11
53 6 0.13
54 7 0.16
55 9 0.20
56 2 0.04
58 10 0.22
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.35
Consensus pattern (51 bp):
ATATATATATAATATAATATTAAGAAAAATAATAAAAAAATACTAATAATG
Found at i:91515655 original size:13 final size:13
Alignment explanation
Indices: 91515637--91515661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91515627 CTTAGCAGGA
91515637 ACACGCCCGTGTG
1 ACACGCCCGTGTG
91515650 ACACGCCCGTGT
1 ACACGCCCGTGT
91515662 TCGATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTG
Found at i:91520559 original size:23 final size:23
Alignment explanation
Indices: 91520532--91520577 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
91520522 GATGATTGTT
91520532 CTTGGAT-GAGAGTTGTTCCTAAA
1 CTTGGATAG-GAGTTGTTCCTAAA
91520555 CTTGGATAGGAGTTGTTCCTAAA
1 CTTGGATAGGAGTTGTTCCTAAA
91520578 TAAGAGTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 21 0.95
24 1 0.05
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (23 bp):
CTTGGATAGGAGTTGTTCCTAAA
Found at i:91521401 original size:29 final size:29
Alignment explanation
Indices: 91521366--91521424 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
91521356 ATTTTTCTAG
91521366 TAGAGCCAAATTAAATGGCGCCACCAAAT
1 TAGAGCCAAATTAAATGGCGCCACCAAAT
91521395 TAGAGCCAAATTAAATGGCGCCACCAAAT
1 TAGAGCCAAATTAAATGGCGCCACCAAAT
91521424 T
1 T
91521425 CTGCCACTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.19
Consensus pattern (29 bp):
TAGAGCCAAATTAAATGGCGCCACCAAAT
Found at i:91521567 original size:25 final size:24
Alignment explanation
Indices: 91521517--91521567 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
91521507 AAAATTTTGA
*
91521517 AATATATATTTGAAATATTTTATT
1 AATATATATTTGAAATACTTTATT
91521541 AATATATATTTTGAAATTACTTT-TT
1 AATATATA-TTTGAAA-TACTTTATT
91521566 AA
1 AA
91521568 AATTTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 8 0.33
25 11 0.46
26 5 0.21
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
AATATATATTTGAAATACTTTATT
Found at i:91521586 original size:22 final size:21
Alignment explanation
Indices: 91521548--91521602 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
91521538 ATTAATATAT
*
91521548 ATTTTGAA-ATTACTTTTTAAA
1 ATTTTAAATATTACTTTTT-AA
* *
91521569 ATTTTAAATATTATTTTTTTA
1 ATTTTAAATATTACTTTTTAA
91521590 ATATTTAAATATT
1 AT-TTTAAATATT
91521603 TTAAACTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTAAATATTACTTTTTAA
Found at i:91521872 original size:22 final size:23
Alignment explanation
Indices: 91521847--91521889 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
91521837 TTGTCTTTTT
* *
91521847 CTTTA-ATTTTTTTTTTTTTAAG
1 CTTTATATTTTTCTTGTTTTAAG
91521869 CTTTATATTTTTCTTGTTTTA
1 CTTTATATTTTTCTTGTTTTA
91521890 TTTTGTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (23 bp):
CTTTATATTTTTCTTGTTTTAAG
Found at i:91521904 original size:4 final size:4
Alignment explanation
Indices: 91521895--91521920 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
91521885 TTTTATTTTG
91521895 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
91521921 GTTATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:91522004 original size:19 final size:20
Alignment explanation
Indices: 91521956--91522018 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
91521946 TGTATATTTG
91521956 AAATGTTTTATATATATATATTTT
1 AAAT-TTTTA-ATAT-TAT-TTTT
91521980 AAA-TTTTAA-ATTATTTTT
1 AAATTTTTAATATTATTTTT
91521998 AAAATTTTTAATATTATTTTT
1 -AAATTTTTAATATTATTTTT
91522019 TTAAACATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
18 4 0.11
19 6 0.17
20 8 0.22
21 10 0.28
22 5 0.14
24 3 0.08
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
AAATTTTTAATATTATTTTT
Found at i:91522023 original size:41 final size:44
Alignment explanation
Indices: 91521936--91522019 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 44
91521926 TAATTTTAAA
*
91521936 AAATTTAAAATGTATATTTGAAATGTTTTATATATATATATTTT
1 AAATTTAAAATGTATATTTAAAATGTTTTATATATATATATTTT
* * *
91521980 AAATTTTAAAT-TATTTTTAAAAT-TTTTA-ATAT-TATTTTTT
1 AAATTTAAAATGTATATTTAAAATGTTTTATATATATATATTTT
91522020 TAAACATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
40 7 0.19
41 4 0.11
42 5 0.14
43 10 0.28
44 10 0.28
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (44 bp):
AAATTTAAAATGTATATTTAAAATGTTTTATATATATATATTTT
Found at i:91522042 original size:21 final size:21
Alignment explanation
Indices: 91521961--91522043 Score: 80
Period size: 22 Copynumber: 4.0 Consensus size: 21
91521951 ATTTGAAATG
*
91521961 TTTTATATATATATATTTTAAA
1 TTTTAAATATATAT-TTTTAAA
*
91521983 TTTTAAAT-TAT-TTTTAAAA
1 TTTTAAATATATATTTTTAAA
* *
91522002 TTTTTAATATTATTTTTTTAAA
1 TTTTAAATA-TATATTTTTAAA
**
91522024 CATTAAATATATATTTTTAA
1 TTTTAAATATATATTTTTAA
91522044 TAATATAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
19 13 0.26
20 1 0.02
21 16 0.32
22 20 0.40
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTAAATATATATTTTTAAA
Found at i:91522138 original size:22 final size:23
Alignment explanation
Indices: 91522107--91522165 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
91522097 GTTTGTTAAT
91522107 ATTTTTAATATTATTTAATT-TG
1 ATTTTTAATATTATTTAATTATG
*
91522129 -TTTTATAATATT-TTAAATTATG
1 ATTTT-TAATATTATTTAATTATG
91522151 ATTTTTAA-ATTATTT
1 ATTTTTAATATTATTT
91522166 TTAAAGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
21 13 0.42
22 14 0.45
23 4 0.13
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (23 bp):
ATTTTTAATATTATTTAATTATG
Found at i:91522405 original size:14 final size:14
Alignment explanation
Indices: 91522383--91522412 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91522373 GAATATCTTT
91522383 AAATAATAATTTAA
1 AAATAATAATTTAA
*
91522397 AAATCATAATTTAA
1 AAATAATAATTTAA
91522411 AA
1 AA
91522413 TATTATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATAATAATTTAA
Found at i:91522438 original size:22 final size:24
Alignment explanation
Indices: 91522381--91522441 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 24
91522371 TTGAATATCT
91522381 TTAAATAATAATTTAAAAATCATAA
1 TTAAATAAT-ATTTAAAAATCATAA
*
91522406 TTTAA-AATA-TTATAAAA-CA-AA
1 TTAAATAATATTTA-AAAATCATAA
91522427 TTAAATAATATTTAA
1 TTAAATAATATTTAA
91522442 GTTATTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 6 0.19
22 10 0.32
23 8 0.26
24 3 0.10
25 4 0.13
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (24 bp):
TTAAATAATATTTAAAAATCATAA
Found at i:91522504 original size:21 final size:22
Alignment explanation
Indices: 91522478--91522531 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
91522468 AAAAGTTTAA
91522478 AATATTT-AAATATTAAAAAA-T
1 AATATTTAAAAT-TTAAAAAAGT
91522499 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAATTTAAAAAAGT
*
91522521 AAT-TTCAAAAT
1 AATATTTAAAAT
91522532 ATATATTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 22 0.73
22 8 0.27
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAGT
Found at i:91522604 original size:13 final size:13
Alignment explanation
Indices: 91522580--91522612 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
91522570 TTTTAAAGTT
91522580 AATAATAATAAATA
1 AATAA-AATAAATA
91522594 AATAAAATAAATA
1 AATAAAATAAATA
91522607 AATAAA
1 AATAAA
91522613 GAGAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAAAATAAATA
Found at i:91526507 original size:20 final size:20
Alignment explanation
Indices: 91526462--91526507 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
91526452 CATCCAAACA
91526462 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
91526482 -CAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
91526501 CCAGAAA
1 CCAGAAA
91526508 TTATTTTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:91526513 original size:14 final size:14
Alignment explanation
Indices: 91526491--91526528 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
91526481 TCAGAAAAGT
*
91526491 AAATCATTTTCCAG
1 AAATTATTTTCCAG
91526505 AAATTATTTTCCAG
1 AAATTATTTTCCAG
*
91526519 AAAATATTTT
1 AAATTATTTT
91526529 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.42
Consensus pattern (14 bp):
AAATTATTTTCCAG
Done.