Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 275 of 332
Found at i:91768383 original size:14 final size:14
Alignment explanation
Indices: 91768364--91768400 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
91768354 TTTTTAAATT
91768364 TTAATAAATTATTA
1 TTAATAAATTATTA
*
91768378 TTAATAAATTATTT
1 TTAATAAATTATTA
91768392 TTAA-AAATT
1 TTAATAAATT
91768401 GAGTTAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTAATAAATTATTA
Found at i:91771405 original size:2 final size:2
Alignment explanation
Indices: 91771398--91771452 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
91771388 TAAAATTCCA
91771398 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
91771440 AG AG AG AA AG AG A
1 AG AG AG AG AG AG A
91771453 AGTTGAACTA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:91774970 original size:17 final size:16
Alignment explanation
Indices: 91774940--91774987 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
91774930 TTACTCACTT
* *
91774940 TTTAATTTACATTTAGG
1 TTTAAATTATATTTA-G
*
91774957 TTTAAGTTATATTTTAG
1 TTTAAATTATA-TTTAG
91774974 TTTAAATTATATTT
1 TTTAAATTATATTT
91774988 CGATCACTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 3 0.11
17 20 0.74
18 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.58
Consensus pattern (16 bp):
TTTAAATTATATTTAG
Found at i:91775043 original size:30 final size:30
Alignment explanation
Indices: 91775004--91775063 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
91774994 CTAAATTTTA
91775004 AAAAATTATGATATGATAATTAATATTATC
1 AAAAATTATGATATGATAATTAATATTATC
* *
91775034 AAAAGTTATGATATGATAATTAATGTTATC
1 AAAAATTATGATATGATAATTAATATTATC
91775064 GGTTTGTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (30 bp):
AAAAATTATGATATGATAATTAATATTATC
Found at i:91783704 original size:34 final size:35
Alignment explanation
Indices: 91783646--91783713 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 35
91783636 CAAACACCAG
* *
91783646 AAAATATTTTCCAGTAAGTCATTTTACAGAAAATT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAATT
* *
91783681 AAAACATTTTCCCG-AAATCATTTTACGGAAAAT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAT
91783714 ATTTTACTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAATT
Found at i:91784754 original size:42 final size:42
Alignment explanation
Indices: 91784687--91784813 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 42
91784677 GTTTTCGTTC
* * * *
91784687 AACCCTAATGGGTTTCTATTCAGCTCTTTTGAGCTTCTGTTT
1 AACCCTTATGGGTTTCTGTTTAGCTCTTATGAGCTTCTGTTT
* * * * *
91784729 GACCCTTATGGGTTTCCGTTTAGCTCTTATGAGCTTCCGATC
1 AACCCTTATGGGTTTCTGTTTAGCTCTTATGAGCTTCTGTTT
* *
91784771 AACCCTT-TAGGGTTTCTGTTTAGCACTTATGTGCTTCTGTTT
1 AACCCTTAT-GGGTTTCTGTTTAGCTCTTATGAGCTTCTGTTT
91784813 A
1 A
91784814 GCCTTCGGAC
Statistics
Matches: 68, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 1 0.01
42 67 0.99
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (42 bp):
AACCCTTATGGGTTTCTGTTTAGCTCTTATGAGCTTCTGTTT
Found at i:91784766 original size:21 final size:21
Alignment explanation
Indices: 91784708--91784767 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
91784698 GTTTCTATTC
* *
91784708 AGCTCTTTTGAGCTTCTGTTT
1 AGCTCTTATGAGCTTCCGTTT
* * *
91784729 -GACCCTTATGGGTTTCCGTTT
1 AG-CTCTTATGAGCTTCCGTTT
91784750 AGCTCTTATGAGCTTCCG
1 AGCTCTTATGAGCTTCCG
91784768 ATCAACCCTT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.43
Consensus pattern (21 bp):
AGCTCTTATGAGCTTCCGTTT
Found at i:91785870 original size:21 final size:21
Alignment explanation
Indices: 91785823--91785864 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
91785813 GCAATTTTGT
* *
91785823 AATTAAAGTGAAATTTAAACA
1 AATTAAAGTGAAAGTAAAACA
91785844 AATTAAAGTGAAAGTAAAACA
1 AATTAAAGTGAAAGTAAAACA
91785865 CTTTAATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.24
Consensus pattern (21 bp):
AATTAAAGTGAAAGTAAAACA
Found at i:91786784 original size:25 final size:25
Alignment explanation
Indices: 91786749--91786817 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
91786739 TGTTATCCAA
* *
91786749 CTCGGAGAAGCTTACCGATATTTAG
1 CTCGAAGAAGCTTACCGATATTCAG
* *
91786774 CTC-ACATAAGCTTACCGTTATTCAG
1 CTCGA-AGAAGCTTACCGATATTCAG
91786799 CTCGAAGAAGCTTACCGAT
1 CTCGAAGAAGCTTACCGAT
91786818 TATCGCTCGT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (25 bp):
CTCGAAGAAGCTTACCGATATTCAG
Found at i:91790011 original size:102 final size:102
Alignment explanation
Indices: 91789835--91790038 Score: 354
Period size: 102 Copynumber: 2.0 Consensus size: 102
91789825 ATTCATGTAA
*
91789835 GAGAGAAATATGGCTCAACAATCTCATCCTCCTATTATACCACCTATAGAGCCGCCGATTGCACC
1 GAGAGAAATATGGCTCAACAACCTCATCCTCCTATTATACCACCTATAGAGCCGCCGATTGCACC
91789900 TCCACCTACTGTAGTGACTAAATCTAGAAAACGTACT
66 TCCACCTACTGTAGTGACTAAATCTAGAAAACGTACT
* * * *
91789937 GAGAGAAATATGGTTCAACAACCTCTTCCTCCTATTATACCACCTATCGAGCCGTCGATTGCACC
1 GAGAGAAATATGGCTCAACAACCTCATCCTCCTATTATACCACCTATAGAGCCGCCGATTGCACC
*
91790002 TTCACCTACTGTAGTGACTAAATCTAGAAAACGTACT
66 TCCACCTACTGTAGTGACTAAATCTAGAAAACGTACT
91790039 CCAAGCGAAA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 96 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (102 bp):
GAGAGAAATATGGCTCAACAACCTCATCCTCCTATTATACCACCTATAGAGCCGCCGATTGCACC
TCCACCTACTGTAGTGACTAAATCTAGAAAACGTACT
Found at i:91793965 original size:42 final size:42
Alignment explanation
Indices: 91793918--91794001 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
91793908 AGCTACCTCT
*
91793918 GACCGTTAGAAATCATATGCAAATTTGAAAAGAAGAGATATA
1 GACCGTCAGAAATCATATGCAAATTTGAAAAGAAGAGATATA
91793960 GACCGTCAGAAATCATATGCAAATTTGAAAAGAAGAGATATA
1 GACCGTCAGAAATCATATGCAAATTTGAAAAGAAGAGATATA
91794002 TAATTTGTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.23
Consensus pattern (42 bp):
GACCGTCAGAAATCATATGCAAATTTGAAAAGAAGAGATATA
Found at i:91809919 original size:48 final size:48
Alignment explanation
Indices: 91809813--91809980 Score: 168
Period size: 48 Copynumber: 3.5 Consensus size: 48
91809803 GATGTAAGCC
* * * *
91809813 AGTGTAAG-GCATGTCTGGGACAT-GCATCGG--C-TACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATA-TAGAGGTGTT
91809857 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGTT
* * * * * *
91809905 AGTGTAAGACCATGTCTGGGATATGGTATCTGCACGGATAT-GTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--ATATAGAG-GTGTT
91809955 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
91809981 TGTCGGCCTC
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
44 8 0.08
45 14 0.13
46 7 0.07
48 40 0.38
49 4 0.04
50 32 0.30
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGTGTT
Found at i:91809981 original size:50 final size:48
Alignment explanation
Indices: 91809670--91810033 Score: 213
Period size: 46 Copynumber: 7.7 Consensus size: 48
91809660 TTATTCGTGT
*
91809670 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGG-CACGATAT-TGAGA
* * * * ** * * * *
91809716 GCCAATGTACGACCATGTCTAGGACATGACATCGGTAATGAGA-CGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGG-CACGATATTGAGA
* * * *
91809764 GCTAGTGTAAGA-CATGTCTGGAACAT-GCATTGGC-CTTGAGA-TGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCAC--GATATTG-AGA
* * * * *
91809810 GCCAGTGTAAG-GCATGTCTGGGACAT-GCATCGGCTACGAGA-TGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGGC-ACGATATTGAGA
* * * *
91809855 TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-ATATAGAGGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCACGATATTGA-GA
* * *
91809902 GTTAGTGTAAGACCATGTCTGGGATATGGTATCTGCACGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCAC-GATAT-TGAGA
* * *
91809952 GCTAGTGTAAGACCATGTCTGGGACATGGTGTCGGCCTCGAT-TTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGG-CACGATATT-GAGA
* *
91810001 GCCAGTGTAAGACCATGTCTAGGACATGGTATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGTATC
91810034 AGCATCATAC
Statistics
Matches: 251, Mismatches: 45, Indels: 41
0.74 0.13 0.12
Matches are distributed among these distances:
44 10 0.04
45 18 0.07
46 65 0.26
47 26 0.10
48 54 0.22
49 35 0.14
50 39 0.16
51 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCACGATATTGAGA
Found at i:91814093 original size:46 final size:48
Alignment explanation
Indices: 91814043--91814169 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 48
91814033 TTGGGCATCT
*
91814043 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGGATCC
* *
91814089 GAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-AGG-ATCC
*
91814136 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91814170 GCGGGTTACA
Statistics
Matches: 67, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 1 0.01
45 2 0.03
46 25 0.37
47 27 0.40
49 1 0.01
50 2 0.03
51 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (48 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGGATCC
Found at i:91817184 original size:14 final size:15
Alignment explanation
Indices: 91817135--91817184 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
91817125 GTATCTTGGG
*
91817135 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
91817150 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
91817165 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
91817179 TTTCTT
1 TTTCTT
91817185 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:91819631 original size:46 final size:46
Alignment explanation
Indices: 91819581--91819756 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
91819571 TGTTTGGGCA
*
91819581 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
91819627 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * * *
91819674 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
91819720 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91819757 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 71 0.68
47 34 0.32
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:91819736 original size:93 final size:93
Alignment explanation
Indices: 91819577--91819748 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
91819567 AGGATGTTTG
* ***
91819577 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAG
91819642 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
91819670 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAG
*
91819735 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
91819749 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:91821188 original size:21 final size:21
Alignment explanation
Indices: 91821161--91821234 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 21
91821151 CCTAATGGGT
91821161 TTTTGTTCAACTCTTTTGAGC
1 TTTTGTTCAACTCTTTTGAGC
* * * * *
91821182 TTCTGTTTAACCCTTATGAGT
1 TTTTGTTCAACTCTTTTGAGC
*
91821203 TTTTGTTCAGCTCTTTTGAGC
1 TTTTGTTCAACTCTTTTGAGC
*
91821224 TTTTGATCAAC
1 TTTTGTTCAAC
91821235 CCTTATGGGT
Statistics
Matches: 40, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.16, C:0.19, G:0.15, T:0.50
Consensus pattern (21 bp):
TTTTGTTCAACTCTTTTGAGC
Found at i:91821194 original size:42 final size:42
Alignment explanation
Indices: 91821146--91821251 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 42
91821136 GAGTTTTCGC
* *
91821146 TCAACCCTAATGGGTTTTTGTTCAACTCTTTTGAGCTTCTGT
1 TCAACCCTTATGGGTTTTTGTTCAACTCTTTTGAGCTTCTGA
* * * *
91821188 TTAACCCTTATGAGTTTTTGTTCAGCTCTTTTGAGCTTTTGA
1 TCAACCCTTATGGGTTTTTGTTCAACTCTTTTGAGCTTCTGA
*
91821230 TCAACCCTTATGGGTTTCTGTT
1 TCAACCCTTATGGGTTTTTGTT
91821252 TAGCACTTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.16, C:0.20, G:0.17, T:0.47
Consensus pattern (42 bp):
TCAACCCTTATGGGTTTTTGTTCAACTCTTTTGAGCTTCTGA
Found at i:91821268 original size:42 final size:42
Alignment explanation
Indices: 91821133--91821270 Score: 116
Period size: 42 Copynumber: 3.3 Consensus size: 42
91821123 TGCTAACTCA
* * * * * *
91821133 TATGAG-TTTTCGCTCAACCCTAATGGGTTTTTGTTCAACTCT
1 TATGAGCTTTT-GATCAACCCTTATGAGTTTCTGTTCAGCACT
* * * * * *
91821175 TTTGAGCTTCTGTTTAACCCTTATGAGTTTTTGTTCAGCTCT
1 TATGAGCTTTTGATCAACCCTTATGAGTTTCTGTTCAGCACT
* * *
91821217 TTTGAGCTTTTGATCAACCCTTATGGGTTTCTGTTTAGCACT
1 TATGAGCTTTTGATCAACCCTTATGAGTTTCTGTTCAGCACT
*
91821259 TATGTGCTTTTG
1 TATGAGCTTTTG
91821271 TTTAGCCTTC
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
42 76 0.96
43 3 0.04
ACGTcount: A:0.16, C:0.19, G:0.18, T:0.47
Consensus pattern (42 bp):
TATGAGCTTTTGATCAACCCTTATGAGTTTCTGTTCAGCACT
Found at i:91824567 original size:30 final size:30
Alignment explanation
Indices: 91824501--91824568 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
91824491 CACCAAGGAT
* *
91824501 GACCGTGTGTCACACACGGCCGTGTAACAT
1 GACCGTGTGTCACACACGGCCGAGTAACAC
*
91824531 GACCGTGTGTCACACACGGCTGAG-ACACAC
1 GACCGTGTGTCACACACGGCCGAGTA-ACAC
*
91824561 GCCCGTGT
1 GACCGTGT
91824569 CTCTGCCCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 1 0.03
30 32 0.97
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (30 bp):
GACCGTGTGTCACACACGGCCGAGTAACAC
Found at i:91838544 original size:23 final size:23
Alignment explanation
Indices: 91838518--91838590 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
91838508 AGTGCCAATA
*
91838518 CACTTGCAATGTAGTGCCACTTT
1 CACTAGCAATGTAGTGCCACTTT
* **
91838541 CACTAG-TATCGTAGTGCTGCTTT
1 CACTAGCAAT-GTAGTGCCACTTT
* * *
91838564 CACTAGTATTGTAGTGCCACTAT
1 CACTAGCAATGTAGTGCCACTTT
91838587 CACT
1 CACT
91838591 TGCGCACTTA
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
22 2 0.05
23 36 0.92
24 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (23 bp):
CACTAGCAATGTAGTGCCACTTT
Found at i:91845296 original size:25 final size:24
Alignment explanation
Indices: 91845229--91845285 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
91845219 GCTGTAAATA
*
91845229 GTAAGCTCCTCCGAGCTAAAAAAC
1 GTAAGCTCCTTCGAGCTAAAAAAC
*
91845253 GTAAGCTCCTTCGAGCTAAATAAC
1 GTAAGCTCCTTCGAGCTAAAAAAC
91845277 AGTAAGCTC
1 -GTAAGCTC
91845286 TTATGAGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 22 0.73
25 8 0.27
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (24 bp):
GTAAGCTCCTTCGAGCTAAAAAAC
Found at i:91848759 original size:89 final size:90
Alignment explanation
Indices: 91848511--91849106 Score: 838
Period size: 90 Copynumber: 6.6 Consensus size: 90
91848501 ATTTTAGAAT
* * * * *
91848511 ATTAATACACAAAAATATAAAATTCAAAC-AAAAATAATACGGACTAAATTAAATTTAAACACTC
1 ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTAAACACCC
* *
91848575 AACAAACTACAAAAGAGATGAGTAAA
66 AACAAACTAC-AAACAGATGGGTAAA
* * *
91848601 ATTAATACACGAAAATTTTAAATCCAAACTACATATAATACAGACTAAATTAAATTTAAACACCC
1 ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTAAACACCC
* *
91848666 AACAAATTACAAACAAATGGGTAAA
66 AACAAACTACAAACAGATGGGTAAA
* * * * *
91848691 ATTAATGCACGCAAATTTTAAATTCAAAC-AAAAATAATACGGAGTAAATTAAATTTAAACACCT
1 ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTAAACACCC
* *
91848755 AACAAACTACAAATAGATGGGTGAA
66 AACAAACTACAAACAGATGGGTAAA
* * *
91848780 ATTAATGCACGAAAATTTTAAATTCAAAC-AAAAATAATACGGACTAAATTAAATTTAAACACTC
1 ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTAAACACCC
* *
91848844 AATAAACTACAAACATATGGGTAAA
66 AACAAACTACAAACAGATGGGTAAA
* * * *
91848869 ATTAATACAGGAAAATTTTAAATTCAAACTACATATAATATGGACTAAATTAAAATTAAACACCC
1 ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTAAACACCC
*
91848934 AACAAACTACAAATAGATGGGTAAA
66 AACAAACTACAAACAGATGGGTAAA
* * * * *
91848959 ATTAATGCATGAAAATTTTAAATTCAAACTATATATAATACAGACTAAATTGAATTTAAACACCC
1 ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTAAACACCC
*
91849024 AACAAACTACAAACAGATAGGTAAA
66 AACAAACTACAAACAGATGGGTAAA
*
91849049 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTA
1 ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTA
91849107 CAGATACAAA
Statistics
Matches: 448, Mismatches: 56, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
89 159 0.35
90 249 0.56
91 40 0.09
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.26
Consensus pattern (90 bp):
ATTAATACACGAAAATTTTAAATTCAAACTAAATATAATACGGACTAAATTAAATTTAAACACCC
AACAAACTACAAACAGATGGGTAAA
Found at i:91854225 original size:23 final size:23
Alignment explanation
Indices: 91854196--91854241 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
91854186 ATTATATTAA
* *
91854196 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAAAATAAATAT
*
91854219 AATTAAAAATAAAAAATATATAT
1 AATTAAAAATAAAAAATAAATAT
91854242 TTATTAGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATTAAAAATAAAAAATAAATAT
Found at i:91858442 original size:24 final size:28
Alignment explanation
Indices: 91858414--91858467 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
91858404 TTGTCCCATC
91858414 AAAAA-AAATT-TTA-ATAAATTTAATT
1 AAAAATAAATTATTACATAAATTTAATT
91858439 AAAAATAAATTATTATCATAAATTTAATT
1 AAAAATAAATTATTA-CATAAATTTAATT
91858468 TTCATAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 5 0.20
26 5 0.20
27 3 0.12
29 12 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (28 bp):
AAAAATAAATTATTACATAAATTTAATT
Found at i:91863156 original size:22 final size:22
Alignment explanation
Indices: 91863131--91863187 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
91863121 AGACTTGAAG
*
91863131 AGTTTAGGGTTTATGTTTTTAA
1 AGTTTAGGGTTTATGGTTTTAA
* *
91863153 AGTTTAGAGTTTATGGTTTTAG
1 AGTTTAGGGTTTATGGTTTTAA
*
91863175 GGTTTAGGGTTTA
1 AGTTTAGGGTTTA
91863188 AGGTAGAGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (22 bp):
AGTTTAGGGTTTATGGTTTTAA
Found at i:91865699 original size:21 final size:21
Alignment explanation
Indices: 91865660--91865699 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91865650 ACTCAGCTTC
*
91865660 ATTGAGCTATTAATGAACTTA
1 ATTGAGCTATTAATAAACTTA
91865681 ATTGAGCTAATTAA-AAACT
1 ATTGAGCT-ATTAATAAACT
91865700 ACAAGACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (21 bp):
ATTGAGCTATTAATAAACTTA
Found at i:91871590 original size:49 final size:49
Alignment explanation
Indices: 91871513--91871907 Score: 409
Period size: 49 Copynumber: 7.9 Consensus size: 49
91871503 TAGCCAAAGC
* * *
91871513 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
91871562 TATCTGGTACACGTCGTAGCCTGTACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * *
91871612 CATCTGATACACGTAGCAGCCTGCACTTAATACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
91871663 TATC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
91871712 TATCCGGTACACGTCA-TAGCCTGTACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACAT-AGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
91871762 TATCTGATACACGTAGCAGCCTGCACTTAATACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
91871813 TATC-GAGTACGCATAGTAGCCTGCACTTAGTACTACAAATGCGACCAAT
1 TATCTG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
91871862 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
91871908 TCACAATAGA
Statistics
Matches: 283, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
49 119 0.42
50 94 0.33
51 70 0.25
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:91871790 original size:150 final size:150
Alignment explanation
Indices: 91871519--91871908 Score: 701
Period size: 150 Copynumber: 2.6 Consensus size: 150
91871509 AAGCTATCTG
* *
91871519 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTCGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTCATAGCCT
91871584 GTACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGCAGCCTGCACTTAATACTACA
66 GTACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGCAGCCTGCACTTAATACTACA
91871649 CACGTGATCGAAGTTATCGA
131 CACGTGATCGAAGTTATCGA
91871669 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTCATAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTCATAGCCT
*
91871734 GTACTTAGTACTACACACGTGACCTAACTATCTGATACACGTAGCAGCCTGCACTTAATACTACA
66 GTACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGCAGCCTGCACTTAATACTACA
91871799 CACGTGATCGAAGTTATCGA
131 CACGTGATCGAAGTTATCGA
* *
91871819 GTACGCATAGTAGCCTGCACTTAGTACTACAAATGCGACCAATTATCCGGTACACAT-AGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTCA-TAGCC
**
91871883 TACACTTAGTACTACACACGTGACCT
65 TGTACTTAGTACTACACACGTGACCT
91871909 CACAATAGAT
Statistics
Matches: 232, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
149 1 0.00
150 231 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (150 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTCATAGCCT
GTACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGCAGCCTGCACTTAATACTACA
CACGTGATCGAAGTTATCGA
Found at i:91876963 original size:49 final size:49
Alignment explanation
Indices: 91876904--91877146 Score: 292
Period size: 49 Copynumber: 4.9 Consensus size: 49
91876894 TAGCCTAAGC
* *
91876904 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
91876953 TATCTTGT--ACATGGTAGCTTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
91877001 CATCTGATACACGTAGTAGCCTGCACTTAATACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
91877052 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGAGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
91877101 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACAGACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
91877147 TCACAATAGA
Statistics
Matches: 160, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
47 32 0.20
48 7 0.04
49 49 0.31
50 35 0.22
51 37 0.23
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:91882582 original size:33 final size:32
Alignment explanation
Indices: 91882545--91882645 Score: 87
Period size: 33 Copynumber: 3.1 Consensus size: 32
91882535 TACCCAAATG
*
91882545 GTACAATTTGAAAAGGTTATGTACACCTTGTGT
1 GTAC-ATTTGAAAAGGTTAGGTACACCTTGTGT
* * *
91882578 GTACACTTG-AAAGGTTAGGTATACTTTGTGT
1 GTACATTTGAAAAGGTTAGGTACACCTTGTGT
* * ** * *
91882609 ATACCATATGAAAAGGAAAGGTATACTTTGTGT
1 GTA-CATTTGAAAAGGTTAGGTACACCTTGTGT
91882642 GTAC
1 GTAC
91882646 CACTTGGAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
31 21 0.38
32 9 0.16
33 26 0.46
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.35
Consensus pattern (32 bp):
GTACATTTGAAAAGGTTAGGTACACCTTGTGT
Found at i:91884922 original size:18 final size:18
Alignment explanation
Indices: 91884901--91884945 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
91884891 AATCTTACTC
91884901 TCTTTTTCTTTTTCAATT
1 TCTTTTTCTTTTTCAATT
**
91884919 TCTTTTTCTTTTTTGATT
1 TCTTTTTCTTTTTCAATT
91884937 TCTTTTTCT
1 TCTTTTTCT
91884946 CTCGTCTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
TCTTTTTCTTTTTCAATT
Found at i:91886560 original size:21 final size:21
Alignment explanation
Indices: 91886517--91886560 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
91886507 ACACACTCAG
*
91886517 CTTAATTGAGCTATTAATGAA
1 CTTAATTGAGCTATTAATAAA
91886538 CTTAATTGAGCTAATTAA-AAA
1 CTTAATTGAGCT-ATTAATAAA
91886559 CT
1 CT
91886561 ATAAGACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (21 bp):
CTTAATTGAGCTATTAATAAA
Found at i:91890304 original size:14 final size:15
Alignment explanation
Indices: 91890282--91890311 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
91890272 TTATATTAAT
91890282 TTTTATTTAAAAATA
1 TTTTATTTAAAAATA
91890297 TTTT-TTTAAAAATA
1 TTTTATTTAAAAATA
91890311 T
1 T
91890312 ATCTATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTATTTAAAAATA
Found at i:91891118 original size:28 final size:31
Alignment explanation
Indices: 91891062--91891119 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
91891052 ATTTTAAATT
*
91891062 AATAATAATAAAATTACATTTTATCTTTTCA
1 AATAATAATAAAATTACATTTAATCTTTTCA
* *
91891093 AATAATAA-AAATTTA-ATTTAATTTTTT
1 AATAATAATAAAATTACATTTAATCTTTT
91891120 TAAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.42
30 6 0.25
31 8 0.33
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (31 bp):
AATAATAATAAAATTACATTTAATCTTTTCA
Found at i:91891829 original size:7 final size:7
Alignment explanation
Indices: 91891817--91891848 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
91891807 TCAACATTGC
91891817 TTTTCTT
1 TTTTCTT
91891824 TTTTCTT
1 TTTTCTT
91891831 TTTTCTT
1 TTTTCTT
91891838 TTTTCTT
1 TTTTCTT
91891845 TTTT
1 TTTT
91891849 TGTGCTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTCTT
Found at i:91893379 original size:21 final size:21
Alignment explanation
Indices: 91893344--91893463 Score: 100
Period size: 21 Copynumber: 5.8 Consensus size: 21
91893334 ACCCAGTAGG
*
91893344 GTTAATCTGAAACTCATAAGA
1 GTTAAACTGAAACTCATAAGA
* *
91893365 GTTGAACTAAAACTCATTAAG-
1 GTTAAACTGAAACTCA-TAAGA
* *
91893386 GTTAAACTGAAGCTCAAAAGA
1 GTTAAACTGAAACTCATAAGA
* * * *
91893407 GCTAAACTGAAACCCAAAAGG
1 GTTAAACTGAAACTCATAAGA
* *
91893428 GTTAATCTGAAACTCATATGA
1 GTTAAACTGAAACTCATAAGA
* *
91893449 G-TCAACTAAAACTCA
1 GTTAAACTGAAACTCA
91893464 ATTCGAGCTA
Statistics
Matches: 77, Mismatches: 20, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
20 14 0.18
21 59 0.77
22 4 0.05
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.23
Consensus pattern (21 bp):
GTTAAACTGAAACTCATAAGA
Found at i:91893407 original size:84 final size:83
Alignment explanation
Indices: 91893310--91893463 Score: 229
Period size: 84 Copynumber: 1.8 Consensus size: 83
91893300 GGGTTGAATA
** *
91893310 GAAGCTAATAAGAGCTAAACAAAAACCCAGTAGGGTTAATCTGAAACTCATAAGAGTTGAACTAA
1 GAAGCTAATAAGAGCTAAACAAAAACCCAAAAGGGTTAATCTGAAACTCATAAGAG-TCAACTAA
91893375 AACTCATTAAGGTTAAACT
65 AACTCATTAAGGTTAAACT
** *
91893394 GAAGCTCAA-AAGAGCTAAACTGAAACCCAAAAGGGTTAATCTGAAACTCATATGAGTCAACTAA
1 GAAGCT-AATAAGAGCTAAACAAAAACCCAAAAGGGTTAATCTGAAACTCATAAGAGTCAACTAA
91893458 AACTCA
65 AACTCA
91893464 ATTCGAGCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
83 13 0.21
84 48 0.76
85 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (83 bp):
GAAGCTAATAAGAGCTAAACAAAAACCCAAAAGGGTTAATCTGAAACTCATAAGAGTCAACTAAA
ACTCATTAAGGTTAAACT
Found at i:91893438 original size:42 final size:42
Alignment explanation
Indices: 91893281--91893460 Score: 154
Period size: 42 Copynumber: 4.3 Consensus size: 42
91893271 GCACATAAGT
* * *
91893281 GCTAAACGAAAACCCATAAGGGTTGAAT-AGAAGCT-AATAAGA
1 GCTAAACTAAAACCCATAAGGGTT-AATCTGAAACTCAA-AAGA
* *
91893323 GCTAAACAAAAACCCAGT-AGGGTTAATCTGAAACTCATAAGA
1 GCTAAACTAAAACCCA-TAAGGGTTAATCTGAAACTCAAAAGA
* * * * *
91893365 GTTGAACTAAAACTCATTAA-GGTTAAACTGAAGCTCAAAAGA
1 GCTAAACTAAAACCCA-TAAGGGTTAATCTGAAACTCAAAAGA
* * * *
91893407 GCTAAACTGAAACCCAAAAGGGTTAATCTGAAACTCATATGA
1 GCTAAACTAAAACCCATAAGGGTTAATCTGAAACTCAAAAGA
*
91893449 G-TCAACTAAAAC
1 GCTAAACTAAAAC
91893461 TCAATTCGAG
Statistics
Matches: 110, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
41 14 0.13
42 93 0.85
43 3 0.03
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.20
Consensus pattern (42 bp):
GCTAAACTAAAACCCATAAGGGTTAATCTGAAACTCAAAAGA
Found at i:91896146 original size:19 final size:20
Alignment explanation
Indices: 91896124--91896161 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91896114 TTTTTGAATA
91896124 ATTTAATTT-TTTT-CTTTTT
1 ATTT-ATTTATTTTCCTTTTT
91896143 ATTTATTTATTTTCCTTTT
1 ATTTATTTATTTTCCTTTT
91896162 CTTCTTCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (20 bp):
ATTTATTTATTTTCCTTTTT
Found at i:91896547 original size:30 final size:30
Alignment explanation
Indices: 91896513--91896572 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
91896503 TAAGTAAACG
91896513 ATAAAATTAATCTAAATCTTCTTGGATACT
1 ATAAAATTAATCTAAATCTTCTTGGATACT
91896543 ATAAAATTAATCTAAATCTTCTTGGATACT
1 ATAAAATTAATCTAAATCTTCTTGGATACT
91896573 CTCAACCAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (30 bp):
ATAAAATTAATCTAAATCTTCTTGGATACT
Found at i:91898188 original size:142 final size:141
Alignment explanation
Indices: 91897933--91898215 Score: 440
Period size: 142 Copynumber: 2.0 Consensus size: 141
91897923 TGACTTCATT
* * *
91897933 CTCTCAAATGGTATTATATCATAGGATATGATGTGTTGGGATCAACCTGTATAAACAATGAAATA
1 CTCTCAAATGGTATTATATCATAGGATATGATATGTTGGGATCAACCCGTATAAACAACGAAATA
* * * * *
91897998 GAAAAAGGTAGAGAAGATCGAACATAAATATTTTACTTGGAAAACTCCTTCGAAGAGGATAAAAA
66 GAAAAAGGTAGAGAAGATCGAACACAAATATTTTACATGGAAAACTCCTCCAAAGAGGACAAAAA
91898063 CCATGGACAAA
131 CCATGGACAAA
* * *
91898074 CTCTCAACTGGTATTATATCATAGGATATGATATGTTGGGGATCGACCCGTATAAATAACGAAAT
1 CTCTCAAATGGTATTATATCATAGGATATGATATGTT-GGGATCAACCCGTATAAACAACGAAAT
91898139 AGAAAAAGGTAGAGAAGATCGAACACAAATATTTTACATGGAAAACTCCTCCAAAGAGGACAAAA
65 AGAAAAAGGTAGAGAAGATCGAACACAAATATTTTACATGGAAAACTCCTCCAAAGAGGACAAAA
* *
91898204 ACCTTGGGCAAA
130 ACCATGGACAAA
91898216 GGAAACTTTA
Statistics
Matches: 128, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
141 35 0.27
142 93 0.73
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.24
Consensus pattern (141 bp):
CTCTCAAATGGTATTATATCATAGGATATGATATGTTGGGATCAACCCGTATAAACAACGAAATA
GAAAAAGGTAGAGAAGATCGAACACAAATATTTTACATGGAAAACTCCTCCAAAGAGGACAAAAA
CCATGGACAAA
Found at i:91906087 original size:228 final size:228
Alignment explanation
Indices: 91905686--91906795 Score: 1407
Period size: 228 Copynumber: 4.9 Consensus size: 228
91905676 ATTCAAAATA
* * * ** * * * * *
91905686 GATGCAAATTTTCGTCAAGACCCTCACCGGAAAGACCATCACATTGGAGGTGGAGAGTTCTGATA
1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
* * * * * * * *
91905751 CTATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGTTG
66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG
* * * ** * * *
91905816 ATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCA-CGTTGGCTGATTACAACATCCAGAAGGAGT
131 ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTT-GCAGATTACAACATCCAGAAGGAGT
* * * * *
91905880 CCACACTCCACTTAGTGCTTCGCCTCCGTGGAGG
195 CCACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG
* * * ** * * ** * * * *
91905914 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTACATTGGAGGTAGAGAGTTCAGATA
1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
* * * * * *
91905979 CCATTGATAATGTTAAGGCAAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCAACAGAGGCTG
66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG
* * ** * * * * *
91906044 ATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTATAACATCCAGAAGGAGTC
131 ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC
* *
91906109 CACCCTCCACTTGGTGCTCCGTCTTCGTGGTGG
196 CACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG
* * * * * * *
91906142 TATGCAGATTTTTGTGAAGACACTTACTGGGAAGACCATCACCCTGGAAGTTGAGAGCTCTGACA
1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
* * * * *
91906207 CAATCGATAATGTTAAGGCCAAAATTCAAGATAAGGAAGGTA-TCCCTCCAGACCAGCAGAGGCT
66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCC-CCAGACCAGCAGAGGCT
* * * *
91906271 GATATTTGCTGGAAAGCAGCTAGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGT
130 GATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGT
*
91906336 CCACCCTCCACTTGGTTCTCCGTCTCCGTGGCGG
195 CCACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG
91906370 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
* *
91906435 CGATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAGCAGAGGCTG
66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG
*
91906500 ATTTTTGCTGGGAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC
131 ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC
*
91906565 CACCCTCCACTTGGTTCTCCGTCTCCGTGGCGG
196 CACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG
91906598 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
*
91906663 CGATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAA-TCCCACCAGACCAGCAGAGGCT
66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCC-CCAGACCAGCAGAGGCT
* *
91906727 GATTTTTGCTGGGAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAAT
130 GATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGT
91906792 CCAC
195 CCAC
91906796 TTTGCACCTG
Statistics
Matches: 785, Mismatches: 93, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
227 7 0.01
228 773 0.98
229 5 0.01
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (228 bp):
GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG
ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC
CACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG
Found at i:91909114 original size:18 final size:18
Alignment explanation
Indices: 91909058--91909114 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
91909048 TTTTAATCAC
*
91909058 TAAAA-AAATTAA-GTAT
1 TAAAATAAAATAATGTAT
91909074 TAAAATAAAA-AAGTGGTA-
1 TAAAATAAAATAA-T-GTAT
*
91909092 GAAAATAAAATAATGTAT
1 TAAAATAAAATAATGTAT
91909110 TAAAA
1 TAAAA
91909115 GATTTGTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
16 7 0.22
17 6 0.19
18 14 0.44
19 5 0.16
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (18 bp):
TAAAATAAAATAATGTAT
Found at i:91910021 original size:14 final size:15
Alignment explanation
Indices: 91910004--91910032 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91909994 AAGTATGGTA
91910004 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
91910018 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
91910033 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:91910477 original size:49 final size:52
Alignment explanation
Indices: 91910424--91910522 Score: 141
Period size: 49 Copynumber: 1.9 Consensus size: 52
91910414 AATAAAATTA
* *
91910424 AAAAATTAAAAATACAACTTCTAA-ATTTAAA-T-AATGGAAAATTATTCTG
1 AAAAATTAAAAATACAACTTCGAACATTTAAAGTGAATAGAAAATTATTCTG
*
91910473 AAAAATTAAAAGTACAACTTCGAACATTTAAAGTTGAATAGAAAATTATT
1 AAAAATTAAAAATACAACTTCGAACATTTAAAG-TGAATAGAAAATTATT
91910523 GCATGTACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
49 22 0.51
50 7 0.16
52 1 0.02
53 13 0.30
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (52 bp):
AAAAATTAAAAATACAACTTCGAACATTTAAAGTGAATAGAAAATTATTCTG
Found at i:91916315 original size:17 final size:16
Alignment explanation
Indices: 91916293--91916324 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
91916283 TTTCAAACCA
91916293 TATATTTTATTATTTAT
1 TATATTTTATT-TTTAT
91916310 TATATTTTATTTTTA
1 TATATTTTATTTTTA
91916325 AACACATCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TATATTTTATTTTTAT
Found at i:91924589 original size:58 final size:58
Alignment explanation
Indices: 91924517--91924633 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
91924507 TGTATTTGAA
91924517 ACATCGAAGAGATCAGAATGCAACAATGCCATTAGTGGTCAAATAATGACATATAATG
1 ACATCGAAGAGATCAGAATGCAACAATGCCATTAGTGGTCAAATAATGACATATAATG
91924575 ACATCGAAGAGATCAGAATGCAACAATGCCATTAGTGGTCAAATAATGACATATAATG
1 ACATCGAAGAGATCAGAATGCAACAATGCCATTAGTGGTCAAATAATGACATATAATG
91924633 A
1 A
91924634 TATTCTCGAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (58 bp):
ACATCGAAGAGATCAGAATGCAACAATGCCATTAGTGGTCAAATAATGACATATAATG
Found at i:91926358 original size:30 final size:30
Alignment explanation
Indices: 91926322--91926380 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
91926312 AAAAGTATGT
91926322 CCAAATAAATCTTGACTGACATGTAGCAAA
1 CCAAATAAATCTTGACTGACATGTAGCAAA
91926352 CCAAATAAATCTTGACTGACATGTAGCAA
1 CCAAATAAATCTTGACTGACATGTAGCAA
91926381 TTTGAGCGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (30 bp):
CCAAATAAATCTTGACTGACATGTAGCAAA
Found at i:91926941 original size:22 final size:22
Alignment explanation
Indices: 91926896--91926941 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
91926886 AAATTCTAAG
*
91926896 AAAAAAACAATTATCCTTTATT
1 AAAAAAACAATTATCATTTATT
*
91926918 AAAAAATCAATTACTCATTT-TT
1 AAAAAAACAATTA-TCATTTATT
91926940 AA
1 AA
91926942 TGTTGATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAAAAACAATTATCATTTATT
Found at i:91929703 original size:7 final size:7
Alignment explanation
Indices: 91929691--91929731 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
91929681 ATTCAATTTA
91929691 TTCTCTT
1 TTCTCTT
91929698 TTCTCTT
1 TTCTCTT
*
91929705 TTCGCTT
1 TTCTCTT
*
91929712 TTCGCTT
1 TTCTCTT
*
91929719 TTCTATT
1 TTCTCTT
91929726 TTCTCT
1 TTCTCT
91929732 CTTTATCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.02, C:0.27, G:0.05, T:0.66
Consensus pattern (7 bp):
TTCTCTT
Found at i:91939362 original size:19 final size:19
Alignment explanation
Indices: 91939338--91939376 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
91939328 AATTTGAGTT
*
91939338 AGTTAAAATCTCTTTTCAG
1 AGTTAAAATCTCTTTCCAG
91939357 AGTTAAAATCTCTTTCCAG
1 AGTTAAAATCTCTTTCCAG
91939376 A
1 A
91939377 ATTTCTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (19 bp):
AGTTAAAATCTCTTTCCAG
Found at i:91942295 original size:14 final size:15
Alignment explanation
Indices: 91942273--91942301 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91942263 ATTATTTTAT
91942273 AAATAAATAAAAATA
1 AAATAAATAAAAATA
91942288 AAAT-AATAAAAATA
1 AAATAAATAAAAATA
91942302 TTTTTTAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATAAATAAAAATA
Found at i:91946419 original size:17 final size:17
Alignment explanation
Indices: 91946382--91946419 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
91946372 ATTATCATTA
*
91946382 TTATTTTATTTTTCTTG
1 TTATTTTATTGTTCTTG
91946399 TTATTTTATTAGTTCTT-
1 TTATTTTATT-GTTCTTG
91946416 TTAT
1 TTAT
91946420 CATTTTTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (17 bp):
TTATTTTATTGTTCTTG
Found at i:91946586 original size:7 final size:7
Alignment explanation
Indices: 91946569--91946602 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
91946559 ATAGTATTCC
91946569 TTTATTTA
1 TTTA-TTA
91946577 TTTATTA
1 TTTATTA
91946584 TTTATTA
1 TTTATTA
91946591 TTTATTA
1 TTTATTA
91946598 TTTAT
1 TTTAT
91946603 CATTCTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTA
Found at i:91951217 original size:33 final size:33
Alignment explanation
Indices: 91951163--91951226 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
91951153 AAACAATAAC
* *
91951163 AACAAAATAGTAGTAACATAAT-AGTAAAATAGT
1 AACAAAATAGGAGTAAAATAATAAG-AAAATAGT
91951196 AACAAAATAGGGAG-AAAATAATAAGAAAATA
1 AACAAAATA-GGAGTAAAATAATAAGAAAATA
91951227 ATATTAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 22 0.81
34 5 0.19
ACGTcount: A:0.62, C:0.05, G:0.14, T:0.19
Consensus pattern (33 bp):
AACAAAATAGGAGTAAAATAATAAGAAAATAGT
Found at i:91953205 original size:40 final size:40
Alignment explanation
Indices: 91953160--91953244 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
91953150 TGAAACTGCC
* *
91953160 TTTTATTAATTTATATCATATAACTTATTGAATTATTA-AT
1 TTTTATTAATTTATATCATATAAATTATTGAAATA-TAGAT
*
91953200 TTTTATTAATTTATTTCATATAAATTATTGAAATATAGAT
1 TTTTATTAATTTATATCATATAAATTATTGAAATATAGAT
91953240 TTTTA
1 TTTTA
91953245 ACTCAGCTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (40 bp):
TTTTATTAATTTATATCATATAAATTATTGAAATATAGAT
Found at i:91953228 original size:22 final size:22
Alignment explanation
Indices: 91953162--91953228 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
91953152 AAACTGCCTT
* *
91953162 TTATTAATTTATATCATATAAC
1 TTATTAATTTATTTCATATAAA
**
91953184 TTATTGAA-TTA-TT-A-AT-TT
1 TTATT-AATTTATTTCATATAAA
91953202 TTATTAATTTATTTCATATAAA
1 TTATTAATTTATTTCATATAAA
91953224 TTATT
1 TTATT
91953229 GAAATATAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 12
0.67 0.10 0.24
Matches are distributed among these distances:
17 2 0.06
18 8 0.24
19 4 0.12
20 2 0.06
21 3 0.09
22 13 0.38
23 2 0.06
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.57
Consensus pattern (22 bp):
TTATTAATTTATTTCATATAAA
Found at i:91961629 original size:15 final size:15
Alignment explanation
Indices: 91961609--91961639 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
91961599 TTACCATGTA
*
91961609 TTTTTTAAAATATTT
1 TTTTTTAAAAAATTT
91961624 TTTTTTAAAAAATTT
1 TTTTTTAAAAAATTT
91961639 T
1 T
91961640 ACTATGTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTTAAAAAATTT
Found at i:91962132 original size:29 final size:30
Alignment explanation
Indices: 91962090--91962147 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 30
91962080 TTAAAGTATA
91962090 ATGTATATAATTATACA-AAATCAAAATTT
1 ATGTATATAATTATACATAAATCAAAATTT
91962119 ATGTATCA-AATTATACATTAAATCAAAAT
1 ATGTAT-ATAATTATACA-TAAATCAAAAT
91962148 CCGTAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 15 0.58
30 1 0.04
31 10 0.38
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (30 bp):
ATGTATATAATTATACATAAATCAAAATTT
Found at i:91973010 original size:12 final size:12
Alignment explanation
Indices: 91972993--91973018 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91972983 TTACAAAATT
91972993 TCCACCTTAATG
1 TCCACCTTAATG
91973005 TCCACCTTAATG
1 TCCACCTTAATG
91973017 TC
1 TC
91973019 TCTACCTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.35, G:0.08, T:0.35
Consensus pattern (12 bp):
TCCACCTTAATG
Found at i:91983015 original size:18 final size:18
Alignment explanation
Indices: 91982992--91983027 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
91982982 AGTGAGAAGA
91982992 CCTATAGTTTTTCCTTAT
1 CCTATAGTTTTTCCTTAT
91983010 CCTATAGTTTTTCCTTAT
1 CCTATAGTTTTTCCTTAT
91983028 GAATATGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.06, T:0.56
Consensus pattern (18 bp):
CCTATAGTTTTTCCTTAT
Found at i:91986354 original size:47 final size:47
Alignment explanation
Indices: 91986298--91986550 Score: 391
Period size: 47 Copynumber: 5.4 Consensus size: 47
91986288 CCCTTCGGGA
* * *
91986298 CTTATCACATTTATACACTTTCACATCCATCACAAT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGC
* * *
91986345 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91986392 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
91986439 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91986486 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
91986533 CTTATCACATATACACAC
1 CTTATCACATATATACAC
91986551 CTTGTACATC
Statistics
Matches: 189, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 2 0.01
47 187 0.99
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91990221 original size:23 final size:24
Alignment explanation
Indices: 91990195--91990241 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
91990185 CTTTTTAATT
*
91990195 TAAATTTTACTATAA-AAAATTTA
1 TAAATATTACTATAAGAAAATTTA
*
91990218 TAAATATTAGTATAAGTAAAATTT
1 TAAATATTACTATAAG-AAAATTT
91990242 TTGACATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
25 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (24 bp):
TAAATATTACTATAAGAAAATTTA
Found at i:91996277 original size:17 final size:15
Alignment explanation
Indices: 91996255--91996288 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 15
91996245 CTTCTTCTCC
91996255 TTCTTTCTCTTTTTCTT
1 TTCTTT-TCTTTTT-TT
91996272 TTCTTTTCTTTTTTT
1 TTCTTTTCTTTTTTT
91996287 TT
1 TT
91996289 TAATTTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 7 0.41
17 6 0.35
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTCTTTTCTTTTTTT
Found at i:92010083 original size:13 final size:13
Alignment explanation
Indices: 92010065--92010096 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
92010055 CACAAGAGCA
92010065 TGTGGCTTGGCTG
1 TGTGGCTTGGCTG
92010078 TGTGGCTTGGCTG
1 TGTGGCTTGGCTG
92010091 TGTGGC
1 TGTGGC
92010097 CTAAGTCAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.47, T:0.38
Consensus pattern (13 bp):
TGTGGCTTGGCTG
Found at i:92013370 original size:16 final size:16
Alignment explanation
Indices: 92013345--92013382 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
92013335 TGCCATATGG
92013345 TGTT-ATGGTTAGAAT
1 TGTTCATGGTTAGAAT
92013360 TGTTCATGGTTAGAAT
1 TGTTCATGGTTAGAAT
92013376 TGTTCAT
1 TGTTCAT
92013383 TGTCTGCTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.47
Consensus pattern (16 bp):
TGTTCATGGTTAGAAT
Found at i:92015158 original size:6 final size:6
Alignment explanation
Indices: 92015143--92015174 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
92015133 CACTTAATAA
92015143 ATAG-T ATAGAT ATAGAT ATAGAT ATAGAT ATA
1 ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT ATA
92015175 CAAAATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
ATAGAT
Found at i:92017240 original size:18 final size:18
Alignment explanation
Indices: 92017209--92017262 Score: 92
Period size: 18 Copynumber: 3.1 Consensus size: 18
92017199 CCAATTAGGC
92017209 CGTGTGGG-CTACACGGG
1 CGTGTGGGCCTACACGGG
92017226 CGTGTGGGCCTACACGGG
1 CGTGTGGGCCTACACGGG
*
92017244 CGTGTTGGCCTACACGGG
1 CGTGTGGGCCTACACGGG
92017262 C
1 C
92017263 AGACCACATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
17 8 0.23
18 27 0.77
ACGTcount: A:0.11, C:0.28, G:0.43, T:0.19
Consensus pattern (18 bp):
CGTGTGGGCCTACACGGG
Found at i:92027158 original size:39 final size:39
Alignment explanation
Indices: 92027099--92027238 Score: 208
Period size: 39 Copynumber: 3.6 Consensus size: 39
92027089 GCTCTGATGA
92027099 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
92027138 GCTTTAGTTAGCCTTTGGGCTTCCGTTTAGCACCTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
92027177 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCAGTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
92027216 GCTTCAGCTAGACTTCAGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
92027239 AGATCACGAT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:92027181 original size:21 final size:21
Alignment explanation
Indices: 92027117--92027181 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
92027107 TAGCCTTCGG
*
92027117 GCTTCCGTTTAGCACTTGTGT
1 GCTTCCGTTTAGCACCTGTGT
** * *
92027138 GCTTTAG-TTAG--CCTTTGG
1 GCTTCCGTTTAGCACCTGTGT
92027156 GCTTCCGTTTAGCACCTGTGT
1 GCTTCCGTTTAGCACCTGTGT
92027177 GCTTC
1 GCTTC
92027182 AGTTAGCCTT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
18 9 0.28
19 4 0.12
20 4 0.12
21 15 0.47
ACGTcount: A:0.09, C:0.25, G:0.25, T:0.42
Consensus pattern (21 bp):
GCTTCCGTTTAGCACCTGTGT
Found at i:92029380 original size:53 final size:53
Alignment explanation
Indices: 92029300--92029405 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
92029290 CTTTTGCTGC
92029300 TGTGATTGGTTCTGTCTTGGTCTACTTTTGCAGACTCTTTCAACATGCCCTAT
1 TGTGATTGGTTCTGTCTTGGTCTACTTTTGCAGACTCTTTCAACATGCCCTAT
*
92029353 TGTGATTGGTTCTGTCTTGGTCTACTTTTGCAGACTCTTTCAACGTGCCCTAT
1 TGTGATTGGTTCTGTCTTGGTCTACTTTTGCAGACTCTTTCAACATGCCCTAT
92029406 CTTCTTGCAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (53 bp):
TGTGATTGGTTCTGTCTTGGTCTACTTTTGCAGACTCTTTCAACATGCCCTAT
Found at i:92034424 original size:33 final size:33
Alignment explanation
Indices: 92034374--92034477 Score: 79
Period size: 34 Copynumber: 3.1 Consensus size: 33
92034364 TTTTTTAATT
*
92034374 TTTTAAAA-AATATTATATTATATTATTTTAAAA
1 TTTTAAAATATTA-TATATTATATTATTTTAAAA
* *
92034407 TTTTAAAATATTATATATT-TTTTATTTATTGAAA
1 TTTTAAAATATTATATATTATATTA-TT-TTAAAA
* * * *
92034441 TTTTTATATAGTTATCT-TTAATATTATTTTAATA
1 TTTTAAAATA-TTATATATT-ATATTATTTTAAAA
92034475 TTT
1 TTT
92034478 GCATTAGAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
32 4 0.07
33 16 0.29
34 25 0.45
35 7 0.12
36 4 0.07
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (33 bp):
TTTTAAAATATTATATATTATATTATTTTAAAA
Found at i:92034814 original size:15 final size:15
Alignment explanation
Indices: 92034794--92034826 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
92034784 CACGAGGATG
*
92034794 TTTATGCCTTATTAC
1 TTTATGCCTGATTAC
92034809 TTTATGCCTGATTAC
1 TTTATGCCTGATTAC
92034824 TTT
1 TTT
92034827 CCCAAGCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.55
Consensus pattern (15 bp):
TTTATGCCTGATTAC
Found at i:92038509 original size:11 final size:11
Alignment explanation
Indices: 92038495--92038535 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
92038485 TATTTTCTCC
92038495 CTATTTTGCTA
1 CTATTTTGCTA
*
92038506 CTATTTTACTA
1 CTATTTTGCTA
* *
92038517 TTATGTTGCTA
1 CTATTTTGCTA
92038528 CTATTTTG
1 CTATTTTG
92038536 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:92038757 original size:12 final size:12
Alignment explanation
Indices: 92038727--92038759 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
92038717 TATATATTTT
92038727 AAAATT-ATATA
1 AAAATTAATATA
92038738 AAAA-TAATATA
1 AAAATTAATATA
92038749 AAAATTAATAT
1 AAAATTAATAT
92038760 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:92039453 original size:31 final size:31
Alignment explanation
Indices: 92039418--92039500 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
92039408 CTTCCTGCAT
* *
92039418 TAAAATCCAACCAAATACAACAAATATAGTA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * *
92039449 TAAAATGCAACCAAAAACAGCAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
*
92039480 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
92039501 TTAATTCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
31 27 0.61
33 17 0.39
ACGTcount: A:0.60, C:0.19, G:0.05, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:92045327 original size:9 final size:9
Alignment explanation
Indices: 92045315--92045362 Score: 69
Period size: 9 Copynumber: 5.3 Consensus size: 9
92045305 TCCATAAGTT
*
92045315 GTTATGTAC
1 GTTATGTAA
92045324 GTTATGTAA
1 GTTATGTAA
*
92045333 ATTATGTAA
1 GTTATGTAA
*
92045342 GTTATGTGA
1 GTTATGTAA
92045351 GTTATGTAA
1 GTTATGTAA
92045360 GTT
1 GTT
92045363 GTTTTTTAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.29, C:0.02, G:0.23, T:0.46
Consensus pattern (9 bp):
GTTATGTAA
Found at i:92045787 original size:241 final size:241
Alignment explanation
Indices: 92045364--92045827 Score: 847
Period size: 241 Copynumber: 1.9 Consensus size: 241
92045354 ATGTAAGTTG
92045364 TTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTC
1 TTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTC
* *
92045429 GATATAAGGTAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTCTAAAATATTTTAAAAAAG
66 GATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTCTAAAATATTTAAAAAAAG
*
92045494 GTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATAT
131 GTTGGAGAGAAGGTAAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATAT
*
92045559 TCAGTAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA
196 TCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA
*
92045605 TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTC
1 TTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTC
* * *
92045670 GATATAAGGCAACCCGTCAGGTTTCTAGCCTATATACTTTGAATTTTTAAAATATTTAAAAAAAG
66 GATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTCTAAAATATTTAAAAAAAG
*
92045735 GTTGGAGAGAATGTAAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATAT
131 GTTGGAGAGAAGGTAAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATAT
92045800 TCAATAGTAAATGAGCTCGATAGAACTT
196 TCAATAGTAAATGAGCTCGATAGAACTT
92045828 AAAAAGGTAT
Statistics
Matches: 214, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
241 214 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (241 bp):
TTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTC
GATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTCTAAAATATTTAAAAAAAG
GTTGGAGAGAAGGTAAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATAT
TCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA
Found at i:92045901 original size:24 final size:24
Alignment explanation
Indices: 92045869--92045928 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
92045859 TTAACTTAAA
*
92045869 TGATAAAACGGACACTAATATTTG
1 TGATAAAACGGACAATAATATTTG
92045893 TGATAAAACGGACAATAATATTTG
1 TGATAAAACGGACAATAATATTTG
92045917 TGATAAAACGGA
1 TGATAAAACGGA
92045929 AGAGAATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (24 bp):
TGATAAAACGGACAATAATATTTG
Found at i:92045936 original size:24 final size:24
Alignment explanation
Indices: 92045869--92045939 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
92045859 TTAACTTAAA
**
92045869 TGATAAAACGGACACTAATATTTG
1 TGATAAAACGGACAAGAATATTTG
*
92045893 TGATAAAACGGACAATAATATTTG
1 TGATAAAACGGACAAGAATATTTG
92045917 TGATAAAACGGA-AGAGAATATTT
1 TGATAAAACGGACA-AGAATATTT
92045940 CAATAATAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 1 0.02
24 43 0.98
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGACAAGAATATTTG
Found at i:92046061 original size:64 final size:64
Alignment explanation
Indices: 92045987--92046120 Score: 241
Period size: 64 Copynumber: 2.1 Consensus size: 64
92045977 ATATTTTATT
* *
92045987 AAATATTTGTATATTAGATGGGACATATTATATTAATAAATAAATTTATCAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGAGACATATTATATCAATAAATAAATTTATCAAAAATCGTGATAG
*
92046051 AAATATTTGTATATTAGATGAGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGAGACATATTATATCAATAAATAAATTTATCAAAAATCGTGATAG
92046115 AAATAT
1 AAATAT
92046121 AGAAATATTA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.37
Consensus pattern (64 bp):
AAATATTTGTATATTAGATGAGACATATTATATCAATAAATAAATTTATCAAAAATCGTGATAG
Found at i:92048028 original size:39 final size:40
Alignment explanation
Indices: 92047980--92048060 Score: 146
Period size: 39 Copynumber: 2.0 Consensus size: 40
92047970 GTACGTTGAC
*
92047980 AGAAGCAGATCTCAAATAATCATGCAGAATAACAAATTTA
1 AGAAGCAGATCTCAAATAATCATGCAAAATAACAAATTTA
92048020 AGAA-CAGATCTCAAATAATCATGCAAAATAACAAATTTA
1 AGAAGCAGATCTCAAATAATCATGCAAAATAACAAATTTA
92048059 AG
1 AG
92048061 TTCTCTACCT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 36 0.90
40 4 0.10
ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22
Consensus pattern (40 bp):
AGAAGCAGATCTCAAATAATCATGCAAAATAACAAATTTA
Found at i:92049356 original size:16 final size:17
Alignment explanation
Indices: 92049317--92049358 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
92049307 TGAGAGGAAA
92049317 GGGAAAAT-AGATTTAG
1 GGGAAAATGAGATTTAG
*
92049333 GGAAAAAATGAGATTT-G
1 GG-GAAAATGAGATTTAG
92049350 GGGAAAATG
1 GGGAAAATG
92049359 TTAGGGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 8 0.36
17 8 0.36
18 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.33, T:0.21
Consensus pattern (17 bp):
GGGAAAATGAGATTTAG
Found at i:92049356 original size:17 final size:17
Alignment explanation
Indices: 92049320--92049356 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
92049310 GAGGAAAGGG
92049320 AAAATAGATTTAGGGAA
1 AAAATAGATTTAGGGAA
*
92049337 AAAATGAGATTTGGGGAA
1 AAAAT-AGATTTAGGGAA
92049355 AA
1 AA
92049357 TGTTAGGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.27, T:0.22
Consensus pattern (17 bp):
AAAATAGATTTAGGGAA
Found at i:92050328 original size:15 final size:15
Alignment explanation
Indices: 92050305--92050336 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
92050295 AAATAATAAT
92050305 TTATATATATTTATC
1 TTATATATATTTATC
*
92050320 TTATTTATATTTATC
1 TTATATATATTTATC
92050335 TT
1 TT
92050337 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:92051839 original size:41 final size:41
Alignment explanation
Indices: 92051712--92051848 Score: 129
Period size: 41 Copynumber: 3.3 Consensus size: 41
92051702 ATTAGTGGCG
* **
92051712 TTTTTC-CTATAAACGCCGCAAAAGATAAAGCAATAGTGGCA
1 TTTTTCGC-ATAAACGCCGCAAAAGGTAAAGCAATAGCAGCA
* * **
92051753 TTATTT-GTATAAAAGCCGCAAAAGGTAAAAG-AATAGCAGTG
1 TT-TTTCGCATAAACGCCGCAAAAGGT-AAAGCAATAGCAGCA
* *
92051794 TTTTTCGCATTAACGCTGCAAAAGGTAAAGCAATAGCAGCA
1 TTTTTCGCATAAACGCCGCAAAAGGTAAAGCAATAGCAGCA
92051835 TTTTTC-CTATAAAC
1 TTTTTCGC-ATAAAC
92051849 ACTGCTAATT
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
40 8 0.11
41 61 0.80
42 7 0.09
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.27
Consensus pattern (41 bp):
TTTTTCGCATAAACGCCGCAAAAGGTAAAGCAATAGCAGCA
Found at i:92056992 original size:46 final size:47
Alignment explanation
Indices: 92056888--92057105 Score: 189
Period size: 46 Copynumber: 4.6 Consensus size: 47
92056878 GGGTTATTGT
* * * *
92056888 GAGCTAGTGTAAGACCATGTCTTGGACATGGCATCCGCATTGAGATTA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATTA
* *
92056936 GTGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCGAGATGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGAT-TA
*
92056983 -AGCTAGTGTAAGA-CATGTCTGGAACATGCATCGG-CTACGAGATT-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATTA
*** * * * *
92057027 TTTC-AGTGTAAGACCATGTTTGGGACATGGCATTGGCAC-GGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGAT-T-A
*
92057076 GAGCTAGTGTAAGACCATGTTTGGGACATG
1 GAGCTAGTGTAAGACCATGTCTGGGACATG
92057106 GCGTCAGCCT
Statistics
Matches: 140, Mismatches: 19, Indels: 21
0.78 0.11 0.12
Matches are distributed among these distances:
44 9 0.06
45 16 0.11
46 59 0.42
47 16 0.11
48 14 0.10
49 2 0.01
50 24 0.17
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATTA
Found at i:92061278 original size:25 final size:26
Alignment explanation
Indices: 92061250--92061311 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
92061240 CAAGTTTAAA
*
92061250 CTGAAAATACTGTAAATAGTATA-TT
1 CTGAAAATACTATAAATAGTATACTT
* *
92061275 CTGAAACTACTATAGATAGTATACTT
1 CTGAAAATACTATAAATAGTATACTT
*
92061301 -TGAAAACACTA
1 CTGAAAATACTA
92061312 CAGATAGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 29 0.94
26 2 0.06
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (26 bp):
CTGAAAATACTATAAATAGTATACTT
Found at i:92061316 original size:25 final size:25
Alignment explanation
Indices: 92061265--92061319 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
92061255 AATACTGTAA
*
92061265 ATAGTATATTCTGAAACTACTATAG
1 ATAGTATATTCTGAAACTACTACAG
92061290 ATAGTATACTT-TGAAAAC-ACTACAG
1 ATAGTATA-TTCTG-AAACTACTACAG
92061315 ATAGT
1 ATAGT
92061320 GTATATTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.33
Consensus pattern (25 bp):
ATAGTATATTCTGAAACTACTACAG
Found at i:92062636 original size:59 final size:58
Alignment explanation
Indices: 92062544--92062969 Score: 619
Period size: 59 Copynumber: 7.3 Consensus size: 58
92062534 AAAAGCTAGG
*
92062544 TCATATTTCATAATAATTATACGAATAATTAATTAA-TTTCTAATTAATTAAATAAATAA
1 TCATATTTCATAATAATT-TATGAATAATTAATTAATTTTC-AATTAATTAAATAAATAA
* *
92062603 TCATATTTCATAATAATTTAATGAATAATTAATTAATTTT--A--GATTAAGTAAATAA
1 TCATATTTCATAATAATTT-ATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
* * *
92062658 TCATATTTCATAATAATTCTATGAATAATTAATTAATTTTCGATTAAATAAGTAAATAA
1 TCATATTTCATAATAATT-TATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
* *
92062717 TCATATTTCATAATAATTCTATGAATAATTAACTAATTTTCAATTAATTAAATAAATAG
1 TCATATTTCATAATAATT-TATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
* * *
92062776 TCATATTTCATAATAGTTCGATGAATAATTAACTAATTTTCAATTAATTAAATAAATAA
1 TCATATTTCATAATAATT-TATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
92062835 TCATATTTCATAATAATTCTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
1 TCATATTTCATAATAATT-TATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
* **
92062894 TCATATTTCATAATTATTTTATGAATAATTAATTAATTTTTGATTAATTAAATAAATAA
1 TCATATTTCATAA-TAATTTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
92062953 TCATATTTCATAATAAT
1 TCATATTTCATAATAAT
92062970 GATAATCATA
Statistics
Matches: 339, Mismatches: 20, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
55 50 0.15
56 1 0.00
57 2 0.01
58 4 0.01
59 275 0.81
60 7 0.02
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.44
Consensus pattern (58 bp):
TCATATTTCATAATAATTTATGAATAATTAATTAATTTTCAATTAATTAAATAAATAA
Found at i:92062928 original size:19 final size:19
Alignment explanation
Indices: 92062904--92062944 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
92062894 TCATATTTCA
92062904 TAATT-ATTTTATGAATAAT
1 TAATTAATTTT-TGAATAAT
*
92062923 TAATTAATTTTTGATTAAT
1 TAATTAATTTTTGAATAAT
92062942 TAA
1 TAA
92062945 ATAAATAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TAATTAATTTTTGAATAAT
Found at i:92067866 original size:16 final size:17
Alignment explanation
Indices: 92067834--92067866 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
92067824 ATATGATCTT
92067834 ACACAGAAGCACATATC
1 ACACAGAAGCACATATC
*
92067851 ACACAGATGC-CATATC
1 ACACAGAAGCACATATC
92067867 CCAGATATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.30, G:0.12, T:0.15
Consensus pattern (17 bp):
ACACAGAAGCACATATC
Found at i:92067956 original size:47 final size:48
Alignment explanation
Indices: 92067796--92067957 Score: 197
Period size: 47 Copynumber: 3.4 Consensus size: 48
92067786 TTACACGGAT
* * * *
92067796 CACATATCACACTGATGTCATATCCCAGATATGATCTTACAC-AGAAG
1 CACATATCACACTGATGCCATATCCCAGATATGGTCTTATACGAAAAG
*
92067843 CACATATCACACAGATGCCATATCCCAGATATGGTCTTATACG-AAAG
1 CACATATCACACTGATGCCATATCCCAGATATGGTCTTATACGAAAAG
* * * *
92067890 CTCATATCACACCGATGCCATACCCCA-ACTATGGTCTTATACGAAAAT
1 CACATATCACACTGATGCCATATCCCAGA-TATGGTCTTATACGAAAAG
*
92067938 CACATATCACA-TGTTGCCAT
1 CACATATCACACTGATGCCAT
92067958 GGTCCAACTA
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
46 1 0.01
47 86 0.86
48 13 0.13
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (48 bp):
CACATATCACACTGATGCCATATCCCAGATATGGTCTTATACGAAAAG
Found at i:92071883 original size:47 final size:46
Alignment explanation
Indices: 92071750--92071936 Score: 180
Period size: 47 Copynumber: 4.0 Consensus size: 46
92071740 ATAGTAAAAC
* *
92071750 TATGGTCTTGCAC-ATAGTCACATATCACACACCGAAGCCATAGCCCA-A
1 TATGGTCTTACACGA-AG-CACATAT--CACACCGATGCCATAGCCCAGA
* * * * ** *
92071798 CCATGGTCTTACACGGATCACATATTACACTAATGCCATATCCCAGA
1 -TATGGTCTTACACGAAGCACATATCACACCGATGCCATAGCCCAGA
* *
92071845 TATGGTTTTACACAGAAGCACATATCACACCGATGCCATATCCCAGA
1 TATGGTCTTACAC-GAAGCACATATCACACCGATGCCATAGCCCAGA
* *
92071892 TATGGTCTTATACGGAAGCTCATATCACACCGATGCCATAGCCCA
1 TATGGTCTTACAC-GAAGCACATATCACACCGATGCCATAGCCCA
92071937 ACTGGTCTTA
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
46 26 0.23
47 69 0.61
48 7 0.06
49 12 0.11
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (46 bp):
TATGGTCTTACACGAAGCACATATCACACCGATGCCATAGCCCAGA
Found at i:92073021 original size:317 final size:317
Alignment explanation
Indices: 92072436--92073067 Score: 1246
Period size: 317 Copynumber: 2.0 Consensus size: 317
92072426 TTATGCCGCC
92072436 TCACCCATTCCCTTTAGGCTAATTTGCCGTTTAAGTCCTCCATCATTTAACATTTGAACTATTTA
1 TCACCCATTCCCTTTAGGCTAATTTGCCGTTTAAGTCCTCCATCATTTAACATTTGAACTATTTA
92072501 ATCATTTTAGAAAGTCTTGCACCTTTTTTAATTTAGTCCTTTTTAATTAATTGACTATCCAAACA
66 ATCATTTTAGAAAGTCTTGCACCTTTTTTAATTTAGTCCTTTTTAATTAATTGACTATCCAAACA
92072566 TTAAAATTTTCTAACGAAACTTTAATATTAAGTCAATGACACTCCATAAATATTTATAAAAATAT
131 TTAAAATTTTCTAACGAAACTTTAATATTAAGTCAATGACACTCCATAAATATTTATAAAAATAT
92072631 TATGGCTCGACTTATGCATTCGAGGTCTCGATACCTCTTTTTAGACCCAATTTACCTATTAAATT
196 TATGGCTCGACTTATGCATTCGAGGTCTCGATACCTCTTTTTAGACCCAATTTACCTATTAAATT
*
92072696 ATTTTTTTTAAATCCTAAAATTCACTAATTCAAAAATTCTTCTAAATTCACACTAAT
261 ATTTTTTTTAAATCCCAAAATTCACTAATTCAAAAATTCTTCTAAATTCACACTAAT
92072753 TCACCCATTCCCTTTAGGCTAATTTGCCGTTTAAGTCCTCCATCATTTAACATTTGAACTATTTA
1 TCACCCATTCCCTTTAGGCTAATTTGCCGTTTAAGTCCTCCATCATTTAACATTTGAACTATTTA
92072818 ATCATTTTAGAAAGTCTTGCACCTTTTTTAATTTAGTCCTTTTTAATTAATTGACTATCCAAACA
66 ATCATTTTAGAAAGTCTTGCACCTTTTTTAATTTAGTCCTTTTTAATTAATTGACTATCCAAACA
92072883 TTAAAATTTTCTAACGAAACTTTAATATTAAGTCAATGACACTCCATAAATATTTATAAAAATAT
131 TTAAAATTTTCTAACGAAACTTTAATATTAAGTCAATGACACTCCATAAATATTTATAAAAATA-
92072948 TTATGGCTCGACTTATGCATTCGAGGTCTCGATACCTCTTTTTAGACCCAATTTACCTATTAAAT
195 TTATGGCTCGACTTATGCATTCGAGGTCTCGATACCTCTTTTTAGACCCAATTTACCTATTAAAT
92073013 TATTTTTTTTAAATCCCAAAATTCACTAATTCAAAAATTCTTCTAAATTCACACT
260 TATTTTTTTTAAATCCCAAAATTCACTAATTCAAAAATTCTTCTAAATTCACACT
92073068 TGACCCATAA
Statistics
Matches: 313, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
317 194 0.62
318 119 0.38
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (317 bp):
TCACCCATTCCCTTTAGGCTAATTTGCCGTTTAAGTCCTCCATCATTTAACATTTGAACTATTTA
ATCATTTTAGAAAGTCTTGCACCTTTTTTAATTTAGTCCTTTTTAATTAATTGACTATCCAAACA
TTAAAATTTTCTAACGAAACTTTAATATTAAGTCAATGACACTCCATAAATATTTATAAAAATAT
TATGGCTCGACTTATGCATTCGAGGTCTCGATACCTCTTTTTAGACCCAATTTACCTATTAAATT
ATTTTTTTTAAATCCCAAAATTCACTAATTCAAAAATTCTTCTAAATTCACACTAAT
Found at i:92079146 original size:21 final size:21
Alignment explanation
Indices: 92079122--92079169 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
92079112 CATTAGAAAT
92079122 AAGTAAAATAGAAGTGAAAGG
1 AAGTAAAATAGAAGTGAAAGG
92079143 AAGTAAAATAGAAGTGAAAGG
1 AAGTAAAATAGAAGTGAAAGG
92079164 -AGTAAA
1 AAGTAAA
92079170 CAAACGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (21 bp):
AAGTAAAATAGAAGTGAAAGG
Found at i:92085565 original size:43 final size:42
Alignment explanation
Indices: 92085517--92085635 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 42
92085507 GTTTTCTCAC
* * * *
92085517 ACAAACACTGCTAAAGATCATGGTATTTAGCAGTGCTTTTCCT
1 ACAAACAC-GCTAAAGAACATGATCTTTAGCAGCGCTTTTCCT
* * * *
92085560 ACAAACGCCGCTAAAGAACATGATCTTTAACGGCGCTTTTGCT
1 ACAAAC-ACGCTAAAGAACATGATCTTTAGCAGCGCTTTTCCT
92085603 ACAAACACGCTAAAGAACATGATCTTTAGCAGC
1 ACAAACACGCTAAAGAACATGATCTTTAGCAGC
92085636 ATTTGTAGGA
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 24 0.38
43 39 0.61
44 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
ACAAACACGCTAAAGAACATGATCTTTAGCAGCGCTTTTCCT
Found at i:92088644 original size:22 final size:21
Alignment explanation
Indices: 92088593--92088655 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
92088583 CCGAAAGGGT
* * *
92088593 ATTATTAACTAAAGATGATAA
1 ATTATTAATTAAAGATAATTA
*
92088614 ATAACTTAATTAAAGATAATTA
1 ATTA-TTAATTAAAGATAATTA
92088636 ATTATTTAATT--AGATAATTA
1 ATTA-TTAATTAAAGATAATTA
92088656 GGGATTTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
20 9 0.26
21 3 0.09
22 23 0.66
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (21 bp):
ATTATTAATTAAAGATAATTA
Found at i:92089960 original size:17 final size:17
Alignment explanation
Indices: 92089938--92089981 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
92089928 GATCTCCGAT
92089938 GAGCTTCCAACCAAATC
1 GAGCTTCCAACCAAATC
92089955 GAGCTTCCAACCAAATC
1 GAGCTTCCAACCAAATC
*
92089972 AAGCTTCCAA
1 GAGCTTCCAA
92089982 TAATTTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.36, C:0.34, G:0.11, T:0.18
Consensus pattern (17 bp):
GAGCTTCCAACCAAATC
Found at i:92091041 original size:17 final size:17
Alignment explanation
Indices: 92091019--92091053 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
92091009 TTTCATTCTT
92091019 ATTCTTCAGAGAATCTA
1 ATTCTTCAGAGAATCTA
*
92091036 ATTCTTCGGAGAATCTA
1 ATTCTTCAGAGAATCTA
92091053 A
1 A
92091054 CTTGTGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (17 bp):
ATTCTTCAGAGAATCTA
Found at i:92094458 original size:15 final size:14
Alignment explanation
Indices: 92094438--92094489 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
92094428 TGGTTAATTG
92094438 TAATTAATATTTAAT
1 TAATTAA-ATTTAAT
*
92094453 TAATTAAGGTTTAAT
1 TAATTAA-ATTTAAT
* *
92094468 TAAATAAATTTTTAT
1 TAATTAAA-TTTAAT
92094483 TAATTAA
1 TAATTAA
92094490 CTTAACTTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (14 bp):
TAATTAAATTTAAT
Found at i:92095633 original size:2 final size:2
Alignment explanation
Indices: 92095626--92095654 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
92095616 TTATATGGTA
92095626 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
92095655 ACACAATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:92101834 original size:26 final size:26
Alignment explanation
Indices: 92101797--92101880 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
92101787 TGATACAAAT
* *
92101797 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
92101823 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
92101849 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
92101875 TGATAA
1 TGATAA
92101881 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:92102927 original size:18 final size:18
Alignment explanation
Indices: 92102904--92102940 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
92102894 GGTTGGCCGA
92102904 ATATTGTAAGGGGTTAAT
1 ATATTGTAAGGGGTTAAT
92102922 ATATTGTAAGGGGTTAAT
1 ATATTGTAAGGGGTTAAT
92102940 A
1 A
92102941 CGTAGTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (18 bp):
ATATTGTAAGGGGTTAAT
Found at i:92103555 original size:27 final size:27
Alignment explanation
Indices: 92103514--92103602 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
92103504 GAGGAAGCGT
*
92103514 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
92103541 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
92103568 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
*
92103596 TTTGGTG
1 TCTGGTG
92103603 ACCTTGTCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 47 0.89
28 6 0.11
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:92103619 original size:54 final size:54
Alignment explanation
Indices: 92103512--92103626 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
92103502 TGGAGGAAGC
*
92103512 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGCCTCTGCCACATATATCT
* * * * *
92103566 GTTCTGGTGGCTCTGCCACGATTATCTGTATTTGGTGACCT-TGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTG-CCTCTGCCACATATATCT
92103620 GTTCTGG
1 GTTCTGG
92103627 CATCCATGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 37 0.70
55 14 0.26
56 2 0.04
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGCCTCTGCCACATATATCT
Found at i:92105392 original size:71 final size:71
Alignment explanation
Indices: 92105276--92105416 Score: 201
Period size: 71 Copynumber: 2.0 Consensus size: 71
92105266 TAAGGGTGCC
* * * * *
92105276 TACCTGGGCTATTGTCAGGTTGTCATTCATTCCGCCACATATGATCCTTGGGGTAGGGGTATAAC
1 TACCTGGGCTATTGTCAAGTTGTCAATCATTCAGCCACATATGATCCTTGGGGTAGAGATATAAC
92105341 AATTTT
66 AATTTT
* * * *
92105347 TACCTGGGCTCTTGTCAAGTTGTCAATCGTTTAGCCACATGTGATCCTTGGGGTAGAGATATAAC
1 TACCTGGGCTATTGTCAAGTTGTCAATCATTCAGCCACATATGATCCTTGGGGTAGAGATATAAC
92105412 AATTT
66 AATTT
92105417 CCCCCTGTTC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (71 bp):
TACCTGGGCTATTGTCAAGTTGTCAATCATTCAGCCACATATGATCCTTGGGGTAGAGATATAAC
AATTTT
Found at i:92106168 original size:20 final size:20
Alignment explanation
Indices: 92106119--92106169 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
92106109 AAATTATAAT
*
92106119 TAAAATAAAATAAAAATTTA
1 TAAAATAAAATAAAAATATA
* *
92106139 TCAAATTAAATATAAAATATA
1 TAAAATAAAATA-AAAATATA
92106160 TAAAATAAAA
1 TAAAATAAAA
92106170 CAATCAAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
TAAAATAAAATAAAAATATA
Found at i:92110992 original size:4 final size:5
Alignment explanation
Indices: 92110981--92111011 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
92110971 AAAGAAAAAT
92110981 AATAA AAT-A AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AATAA AA
92111012 AAGATTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:92110993 original size:9 final size:9
Alignment explanation
Indices: 92110976--92111010 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
92110966 CTTAGAAAGA
92110976 AAAAT-AAT
1 AAAATAAAT
92110984 AAAATAAAT
1 AAAATAAAT
92110993 AAAATAAAAT
1 AAAAT-AAAT
92111003 AAAATAAA
1 AAAATAAA
92111011 AAAGATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 5 0.20
9 11 0.44
10 9 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAATAAAT
Found at i:92111021 original size:15 final size:15
Alignment explanation
Indices: 92110981--92111011 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
92110971 AAAGAAAAAT
92110981 AATAAAAT-AAATAA
1 AATAAAATAAAATAA
92110995 AATAAAATAAAATAA
1 AATAAAATAAAATAA
92111010 AA
1 AA
92111012 AAGATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
AATAAAATAAAATAA
Found at i:92113043 original size:27 final size:27
Alignment explanation
Indices: 92113013--92113071 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
92113003 AATAAGAATG
92113013 ATTTGAAATTTACAAGTTAAGTGGTAT
1 ATTTGAAATTTACAAGTTAAGTGGTAT
*
92113040 ATTTGAGATTTACAAGTTAAGTGGTAT
1 ATTTGAAATTTACAAGTTAAGTGGTAT
*
92113067 GTTTG
1 ATTTG
92113072 GATATTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.03, G:0.22, T:0.42
Consensus pattern (27 bp):
ATTTGAAATTTACAAGTTAAGTGGTAT
Found at i:92117210 original size:106 final size:106
Alignment explanation
Indices: 92117050--92117373 Score: 474
Period size: 106 Copynumber: 3.1 Consensus size: 106
92117040 TTTAAATGCA
* * * * *
92117050 TGCACATATTTTAAATATGTGATTTTCATATACATACGCGTGTAATA-AATTTTCTAATAAATAT
1 TGCA-ATATTATAAATATGTGATTTTCACATACCTACGCATGTGATAGAA-TTTCTAATAAATAT
* *
92117114 AAAGGGATAAATATTAAATTTATACATGAATTTTGTTTCAATG
64 AAAGGGATAAATATCAAATTTATACATGAACTTTGTTTCAATG
* * *
92117157 TGCAATATTCTAAATATGTGATTTTCACATACCTACGTATGTGATAGAATTTCTAAGAAATATAA
1 TGCAATATTATAAATATGTGATTTTCACATACCTACGCATGTGATAGAATTTCTAATAAATATAA
*
92117222 A-GGAGTAAATATCAAATTCATACATGAACTTTGTTTCAATG
66 AGGGA-TAAATATCAAATTTATACATGAACTTTGTTTCAATG
* *
92117263 TGCAATACTATAAATATGTGATTTTCACATACCTACGCATGTGATAGAATTTCTAGTAAATATAA
1 TGCAATATTATAAATATGTGATTTTCACATACCTACGCATGTGATAGAATTTCTAATAAATATAA
*
92117328 AGAGATAAATATCAAATTTATACATGAACTTT-TTTCAATG
66 AGGGATAAATATCAAATTTATACATGAACTTTGTTTCAATG
92117368 TGCAAT
1 TGCAAT
92117374 TTGATACATG
Statistics
Matches: 197, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
105 17 0.09
106 172 0.87
107 8 0.04
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (106 bp):
TGCAATATTATAAATATGTGATTTTCACATACCTACGCATGTGATAGAATTTCTAATAAATATAA
AGGGATAAATATCAAATTTATACATGAACTTTGTTTCAATG
Found at i:92118752 original size:10 final size:10
Alignment explanation
Indices: 92118725--92118760 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
92118715 TACTCCATGC
92118725 TATTTTTTTA
1 TATTTTTTTA
92118735 TATCTTTTTTA
1 TAT-TTTTTTA
*
92118746 TATTTTTATA
1 TATTTTTTTA
92118756 TATTT
1 TATTT
92118761 GAATTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (10 bp):
TATTTTTTTA
Found at i:92124888 original size:13 final size:13
Alignment explanation
Indices: 92124870--92124894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92124860 AAATTAACTA
92124870 ATAATTATAATTT
1 ATAATTATAATTT
92124883 ATAATTATAATT
1 ATAATTATAATT
92124895 ATCATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATAATTATAATTT
Found at i:92131617 original size:14 final size:13
Alignment explanation
Indices: 92131591--92131630 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
92131581 GTTTAAAGAC
*
92131591 TTTTATTTATTAT
1 TTTTATTTTTTAT
92131604 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
92131618 TTTTATCTTTTTA
1 TTTTAT-TTTTTA
92131631 AAACTACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:92132684 original size:14 final size:14
Alignment explanation
Indices: 92132665--92132703 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
92132655 ATATTTGACT
92132665 TGTTCTTAATTATA
1 TGTTCTTAATTATA
*
92132679 TGTTCTTAATTATG
1 TGTTCTTAATTATA
92132693 TGTTCTTAATT
1 TGTTCTTAATT
92132704 TTTGTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.23, C:0.08, G:0.10, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATA
Found at i:92138758 original size:12 final size:13
Alignment explanation
Indices: 92138741--92138770 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
92138731 TAAACACCTA
92138741 TTTTTAT-TTTAT
1 TTTTTATCTTTAT
92138753 TTTTTATCTTTAT
1 TTTTTATCTTTAT
92138766 TTTTT
1 TTTTT
92138771 TGAAACTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTATCTTTAT
Done.