Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 276 of 332
Found at i:92157069 original size:39 final size:39
Alignment explanation
Indices: 92156896--92157072 Score: 203
Period size: 39 Copynumber: 4.5 Consensus size: 39
92156886 ATTCACTATT
* * * * * *
92156896 AAGCATGTATCACATTACACATATAATCACATAACCTTT
1 AAGCATATATCGCAATACTCATATAATCACATAACATTC
* * * *
92156935 AAGCATATA-CAACAATACTCATATAATTACATAACGTTT
1 AAGCATATATC-GCAATACTCATATAATCACATAACATTC
*
92156974 AAGCACATATCGCAATACTCATATAATCACATAACATTC
1 AAGCATATATCGCAATACTCATATAATCACATAACATTC
* *
92157013 AAGCATTTATCGCAATACTCATTTAATCACATAACATTC
1 AAGCATATATCGCAATACTCATATAATCACATAACATTC
* *
92157052 AAGCATATGTCGTAATACTCA
1 AAGCATATATCGCAATACTCA
92157073 AAAAAATATT
Statistics
Matches: 120, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 118 0.98
40 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (39 bp):
AAGCATATATCGCAATACTCATATAATCACATAACATTC
Found at i:92157330 original size:50 final size:50
Alignment explanation
Indices: 92157255--92157362 Score: 189
Period size: 50 Copynumber: 2.2 Consensus size: 50
92157245 AGAGTCAAAA
* *
92157255 ATGTCTCAAAAGTGAAGCTTAAAGCTAACACTCTCCTTATTTCCCCTCAC
1 ATGTCCCAAAAGTGAAGCATAAAGCTAACACTCTCCTTATTTCCCCTCAC
*
92157305 ATGTCCCAAAAGTGAAGCATAAAGCTAACACTCTCTTTATTTCCCCTCAC
1 ATGTCCCAAAAGTGAAGCATAAAGCTAACACTCTCCTTATTTCCCCTCAC
92157355 ATGTCCCA
1 ATGTCCCA
92157363 TTGAATAAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.29
Consensus pattern (50 bp):
ATGTCCCAAAAGTGAAGCATAAAGCTAACACTCTCCTTATTTCCCCTCAC
Found at i:92162176 original size:26 final size:26
Alignment explanation
Indices: 92162140--92162192 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
92162130 TTCTTTTCTT
92162140 TTGTTTCTTATTTCGGTGGATGAACA
1 TTGTTTCTTATTTCGGTGGATGAACA
92162166 TTGTTTCTTATTTCGGTGGATGAACA
1 TTGTTTCTTATTTCGGTGGATGAACA
92162192 T
1 T
92162193 AATAATATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.11, G:0.23, T:0.47
Consensus pattern (26 bp):
TTGTTTCTTATTTCGGTGGATGAACA
Found at i:92174102 original size:30 final size:31
Alignment explanation
Indices: 92174034--92174092 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
92174024 CACCCTTAAA
* * *
92174034 ATATTTTCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
92174065 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
92174093 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.20, G:0.02, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:92183778 original size:34 final size:34
Alignment explanation
Indices: 92183740--92183809 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
92183730 AGCTCAAATC
*
92183740 ATACTATTTCAATCATTTTAAGTGCCTAACCAAT
1 ATACTATTTCAATCATCTTAAGTGCCTAACCAAT
*
92183774 ATACTATTTCAATCATCTTAAGTGTCTAACCAAT
1 ATACTATTTCAATCATCTTAAGTGCCTAACCAAT
92183808 AT
1 AT
92183810 GCACACTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.39
Consensus pattern (34 bp):
ATACTATTTCAATCATCTTAAGTGCCTAACCAAT
Found at i:92205190 original size:20 final size:20
Alignment explanation
Indices: 92205165--92205211 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
92205155 GAGGTGGCCA
92205165 TTTTATTTCAATTTAATACG
1 TTTTATTTCAATTTAATACG
*
92205185 TTTTATTTCACTTTAATACG
1 TTTTATTTCAATTTAATACG
92205205 TTTTATT
1 TTTTATT
92205212 ACATTGCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTTATTTCAATTTAATACG
Found at i:92208387 original size:23 final size:24
Alignment explanation
Indices: 92208354--92208398 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
92208344 TATTCAATTA
92208354 GTTCACAAACATGTTTT-TTTATT
1 GTTCACAAACATGTTTTGTTTATT
*
92208377 GTTCACTAACATGTTTTGTTTA
1 GTTCACAAACATGTTTTGTTTA
92208399 ACTTAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.51
Consensus pattern (24 bp):
GTTCACAAACATGTTTTGTTTATT
Found at i:92209009 original size:42 final size:42
Alignment explanation
Indices: 92208962--92209047 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
92208952 GCAATTCTTA
92208962 AAATTCACATAAACATTTGAATCAGAGTAAAGTATTTAGACT
1 AAATTCACATAAACATTTGAATCAGAGTAAAGTATTTAGACT
92209004 AAATTCACATAAACATTTGAATCAGAGTAAAGTATTTAGACT
1 AAATTCACATAAACATTTGAATCAGAGTAAAGTATTTAGACT
92209046 AA
1 AA
92209048 CTACTGGTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.30
Consensus pattern (42 bp):
AAATTCACATAAACATTTGAATCAGAGTAAAGTATTTAGACT
Found at i:92209357 original size:23 final size:23
Alignment explanation
Indices: 92209326--92209369 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
92209316 ATTGTATATT
* *
92209326 ATACAAAGTAAATATAACAATTA
1 ATACAAAGTAAAAACAACAATTA
*
92209349 ATACCAAGTAAAAACAACAAT
1 ATACAAAGTAAAAACAACAAT
92209370 ATATTGTAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.14, G:0.05, T:0.20
Consensus pattern (23 bp):
ATACAAAGTAAAAACAACAATTA
Found at i:92216734 original size:13 final size:13
Alignment explanation
Indices: 92216718--92216742 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92216708 TATTTGTAAT
92216718 TGTTATTTACAAA
1 TGTTATTTACAAA
92216731 TGTTATTTACAA
1 TGTTATTTACAA
92216743 TTCCTGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (13 bp):
TGTTATTTACAAA
Found at i:92219747 original size:52 final size:52
Alignment explanation
Indices: 92219690--92219793 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
92219680 TGACTTACCA
*
92219690 ATTAAACTTCAAACCTCAAAACCTTAATTTTTCCCTTTCTTTTTCTTTCTTT
1 ATTAAACTTCAAACCTCAAAACATTAATTTTTCCCTTTCTTTTTCTTTCTTT
92219742 ATTAAACTTCAAACCTCAAAACATTAATTTTTCCCTTTCTTTTTCTTTCTTT
1 ATTAAACTTCAAACCTCAAAACATTAATTTTTCCCTTTCTTTTTCTTTCTTT
92219794 CTTTCCATTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (52 bp):
ATTAAACTTCAAACCTCAAAACATTAATTTTTCCCTTTCTTTTTCTTTCTTT
Found at i:92219891 original size:8 final size:8
Alignment explanation
Indices: 92219880--92219914 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
92219870 TGTTTTATTA
92219880 TATTATAT
1 TATTATAT
92219888 TATTATAT
1 TATTATAT
92219896 TAATT-TAT
1 T-ATTATAT
92219904 TATTATAT
1 TATTATAT
92219912 TAT
1 TAT
92219915 ATACTTAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 3 0.12
8 19 0.76
9 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATTATAT
Found at i:92219892 original size:13 final size:13
Alignment explanation
Indices: 92219874--92219916 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 13
92219864 TATTTATGTT
92219874 TTATTATATTATA
1 TTATTATATTATA
92219887 TTATTATATTAATTTA
1 TTATTATATT-A--TA
92219903 TTATTATATTATA
1 TTATTATATTATA
92219916 T
1 T
92219917 ACTTAAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 13 0.48
14 1 0.04
15 1 0.04
16 12 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:92222439 original size:16 final size:16
Alignment explanation
Indices: 92222418--92222449 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
92222408 AAATCAAACA
92222418 GTCTTTAAAGGGTTGT
1 GTCTTTAAAGGGTTGT
92222434 GTCTTTAAAGGGTTGT
1 GTCTTTAAAGGGTTGT
92222450 AACAGGGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.31, T:0.44
Consensus pattern (16 bp):
GTCTTTAAAGGGTTGT
Found at i:92223660 original size:25 final size:25
Alignment explanation
Indices: 92223632--92223683 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
92223622 AATAGAGGTC
* *
92223632 AAAATATAAATATTAAATAAACATAA
1 AAAATAAAAATA-AAAATAAACATAA
92223658 AAAATAAAAATAAAAATAAACATAA
1 AAAATAAAAATAAAAATAAACATAA
92223683 A
1 A
92223684 GATAAATGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (25 bp):
AAAATAAAAATAAAAATAAACATAA
Found at i:92225811 original size:13 final size:13
Alignment explanation
Indices: 92225793--92225824 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
92225783 CGTATTATGC
92225793 CACACGGCCGTGT
1 CACACGGCCGTGT
92225806 CACACGGCCGTGT
1 CACACGGCCGTGT
92225819 CACACG
1 CACACG
92225825 CCCATGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.19, C:0.41, G:0.28, T:0.12
Consensus pattern (13 bp):
CACACGGCCGTGT
Found at i:92230515 original size:9 final size:10
Alignment explanation
Indices: 92230491--92230515 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92230481 CAAAACATAC
92230491 TAAAAATAAT
1 TAAAAATAAT
92230501 TAAAAATAAT
1 TAAAAATAAT
92230511 TAAAA
1 TAAAA
92230516 CGACCTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAAATAAT
Found at i:92230882 original size:61 final size:59
Alignment explanation
Indices: 92230740--92230911 Score: 156
Period size: 60 Copynumber: 2.8 Consensus size: 59
92230730 TCAAGCTTTA
*
92230740 CTGGGCCTAAGCCCTATT-CAGAAATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCT-AGCCCTATTACAG--ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAAT
* * * *
92230802 GTGGGTCATAGCCC-CTTACAGTATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAAT
1 CTGGG-CCTAGCCCTATTACAG-ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
* *
92230862 CTGGGCCGTAGCCCTATTACA-AGTC-GAGATATATTGGGCCTCGCCCATAT
1 CTGGGCC-TAGCCCTATTACAGA-TCAGAG-TATACTGGGCCTAGCCCATAT
92230912 TAACACAGTT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
59 5 0.05
60 49 0.53
61 23 0.25
62 13 0.14
63 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (59 bp):
CTGGGCCTAGCCCTATTACAGATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
Found at i:92241373 original size:8 final size:8
Alignment explanation
Indices: 92241351--92241396 Score: 58
Period size: 8 Copynumber: 5.5 Consensus size: 8
92241341 TATTTATGTT
92241351 TTATTATA
1 TTATTATA
92241359 TTATATTATA
1 -T-TATTATA
92241369 TTATTATA
1 TTATTATA
92241377 TTAATT-TA
1 TT-ATTATA
92241385 TTATTATA
1 TTATTATA
92241393 TTAT
1 TTAT
92241397 ATACTTAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
7 3 0.09
8 19 0.56
9 5 0.15
10 7 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TTATTATA
Found at i:92241373 original size:13 final size:13
Alignment explanation
Indices: 92241357--92241398 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 13
92241347 TGTTTTATTA
92241357 TATTATATTATAT
1 TATTATATTATAT
92241370 TATTATATTAATTTAT
1 TATTATATT-A--TAT
92241386 TATTATATTATAT
1 TATTATATTATAT
92241399 ACTTAAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 12 0.46
14 1 0.04
15 1 0.04
16 12 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:92241394 original size:5 final size:5
Alignment explanation
Indices: 92241352--92241398 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
92241342 ATTTATGTTT
92241352 TATTA TATTA TATTA TA-T- TATTA TATTA -ATTTA TTATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TA-TTA -TATTA TATTA TAT
92241399 ACTTAAGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
3 2 0.05
4 3 0.08
5 28 0.76
6 3 0.08
7 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:92243962 original size:29 final size:29
Alignment explanation
Indices: 92243925--92243987 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
92243915 ATGCGAATTA
*
92243925 GAATCAGAAATATGACATGCTTAACATGC
1 GAATTAGAAATATGACATGCTTAACATGC
* *
92243954 GAATTAGAAATATGGCATGCTTAACTTGC
1 GAATTAGAAATATGACATGCTTAACATGC
*
92243983 AAATT
1 GAATT
92243988 GGATCATCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (29 bp):
GAATTAGAAATATGACATGCTTAACATGC
Found at i:92244015 original size:66 final size:64
Alignment explanation
Indices: 92243902--92244028 Score: 157
Period size: 66 Copynumber: 2.0 Consensus size: 64
92243892 TTTATCACAG
* * *
92243902 TGGCATGCTTAACATGCGAATTAGAATCAGAAATATGACATGCTTAACATGCGAATTAGAAATA
1 TGGCATGCTTAACATGCAAATTAGAATCAGAAATATAACATGCTTAACATGCAAATTAGAAATA
* * * *
92243966 TGGCATGCTTAACTTGCAAATTGGATCATCAG-AATATTAACATGTTTAACATGTAAATTAGAA
1 TGGCATGCTTAACATGCAAATTAGA--ATCAGAAATA-TAACATGCTTAACATGCAAATTAGAA
92244029 TATCAATAAC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
64 22 0.42
65 4 0.08
66 27 0.51
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (64 bp):
TGGCATGCTTAACATGCAAATTAGAATCAGAAATATAACATGCTTAACATGCAAATTAGAAATA
Found at i:92247182 original size:14 final size:14
Alignment explanation
Indices: 92247165--92247212 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
92247155 ATTCATTACT
92247165 AACTATTAATGAAA
1 AACTATTAATGAAA
* * **
92247179 AACTAATTCATTACT
1 AACT-ATTAATGAAA
92247194 AACTATTAATGAAA
1 AACTATTAATGAAA
92247208 AACTA
1 AACTA
92247213 AGTAAACCAT
Statistics
Matches: 25, Mismatches: 8, Indels: 2
0.71 0.23 0.06
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.31
Consensus pattern (14 bp):
AACTATTAATGAAA
Found at i:92247197 original size:29 final size:29
Alignment explanation
Indices: 92247155--92247213 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
92247145 ACACTTTTTT
92247155 ATTCATTACTAACTATTAATGAAAAACTA
1 ATTCATTACTAACTATTAATGAAAAACTA
92247184 ATTCATTACTAACTATTAATGAAAAACTA
1 ATTCATTACTAACTATTAATGAAAAACTA
92247213 A
1 A
92247214 GTAAACCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.34
Consensus pattern (29 bp):
ATTCATTACTAACTATTAATGAAAAACTA
Found at i:92251929 original size:10 final size:10
Alignment explanation
Indices: 92251905--92251939 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
92251895 TATCGCAAGT
*
92251905 GAAGAGG-AT
1 GAAGAGGAAG
92251914 GAAGAGGAAG
1 GAAGAGGAAG
92251924 GAAGAGGAAG
1 GAAGAGGAAG
92251934 GAAGAG
1 GAAGAG
92251940 AACATACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.03
Consensus pattern (10 bp):
GAAGAGGAAG
Found at i:92255747 original size:30 final size:30
Alignment explanation
Indices: 92255682--92255745 Score: 91
Period size: 28 Copynumber: 2.2 Consensus size: 30
92255672 AAAAGTTTAA
92255682 ATTA-ATTTTATTATATCTGAAATAATTTT
1 ATTATATTTTATTATATCTGAAATAATTTT
92255711 ATTATATTTTA-T-TATCT-AAATCAATTTT
1 ATTATATTTTATTATATCTGAAAT-AATTTT
92255739 ATTATAT
1 ATTATAT
92255746 ATGATTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
27 4 0.12
28 18 0.55
29 5 0.15
30 6 0.18
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.56
Consensus pattern (30 bp):
ATTATATTTTATTATATCTGAAATAATTTT
Found at i:92255752 original size:28 final size:28
Alignment explanation
Indices: 92255695--92255753 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
92255685 AATTTTATTA
* *
92255695 TATCTGAAATAATTTTATTATATTTTAT
1 TATCTGAAATAATTTTATTATATATGAT
92255723 TATCT-AAATCAATTTTATTATATATGAT
1 TATCTGAAAT-AATTTTATTATATATGAT
92255751 TAT
1 TAT
92255754 TTTCTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 4 0.14
28 24 0.86
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.54
Consensus pattern (28 bp):
TATCTGAAATAATTTTATTATATATGAT
Found at i:92257090 original size:33 final size:33
Alignment explanation
Indices: 92257053--92257127 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
92257043 CATTACTTGC
* *
92257053 ATGTATTTATATTTAATGAATGT-TTTAGAGTAG
1 ATGTATCTA-ATTTAATGAATGTATTTAGAGAAG
*
92257086 ATGTATCTAGTTTAATGAATGTATTTAGAGAAG
1 ATGTATCTAATTTAATGAATGTATTTAGAGAAG
92257119 ATGTATCTA
1 ATGTATCTA
92257128 GTAGTCATGC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 12 0.32
33 26 0.68
ACGTcount: A:0.35, C:0.03, G:0.19, T:0.44
Consensus pattern (33 bp):
ATGTATCTAATTTAATGAATGTATTTAGAGAAG
Found at i:92257101 original size:32 final size:33
Alignment explanation
Indices: 92257064--92257129 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
92257054 TGTATTTATA
*
92257064 TTTAATGAATGT-TTTAGAGTAGATGTATCTAG
1 TTTAATGAATGTATTTAGAGAAGATGTATCTAG
92257096 TTTAATGAATGTATTTAGAGAAGATGTATCTAG
1 TTTAATGAATGTATTTAGAGAAGATGTATCTAG
92257129 T
1 T
92257130 AGTCATGCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.42
Consensus pattern (33 bp):
TTTAATGAATGTATTTAGAGAAGATGTATCTAG
Found at i:92261445 original size:32 final size:33
Alignment explanation
Indices: 92261408--92261469 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
92261398 TGTATTTATT
*
92261408 TTTAATGAATGTA-TTAAAGTAGATGTATCCAG
1 TTTAATGAATGTATTTAAAGAAGATGTATCCAG
*
92261440 TTTAATGAATGTATTTAGAGAAGATGTATC
1 TTTAATGAATGTATTTAAAGAAGATGTATC
92261470 TAGTAGTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.39
Consensus pattern (33 bp):
TTTAATGAATGTATTTAAAGAAGATGTATCCAG
Found at i:92266107 original size:16 final size:16
Alignment explanation
Indices: 92266088--92266118 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92266078 CTTCTTCACT
92266088 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
92266104 TACTTACTTACTTAA
1 TACTCACTTACTTAA
92266119 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:92266124 original size:20 final size:20
Alignment explanation
Indices: 92266085--92266124 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
92266075 AAACTTCTTC
* *
92266085 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
92266105 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
92266125 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:92268834 original size:53 final size:55
Alignment explanation
Indices: 92268751--92268866 Score: 139
Period size: 53 Copynumber: 2.1 Consensus size: 55
92268741 TTCATGTCTC
*
92268751 GACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATGCCAGGCCTT
1 GACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTCACCAATGCCAGGCCTT
* * * * * *
92268804 GGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAACTTATCAATGCCATGTCTT
1 GACATGGTCTTACATGGGATCC-TTGCCTTATAGTAACTCACCAATGCCAGGCCTT
92268859 GACATGGT
1 GACATGGT
92268867 ATCCTTACCT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
52 2 0.04
53 25 0.48
54 1 0.02
55 24 0.46
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (55 bp):
GACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTCACCAATGCCAGGCCTT
Found at i:92273921 original size:64 final size:63
Alignment explanation
Indices: 92273772--92274024 Score: 197
Period size: 68 Copynumber: 3.9 Consensus size: 63
92273762 TACAGATAGT
* ** * * * *
92273772 ATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTG-ACAAGAGAGCTAC--GAGA-
*
92273836 TATG
61 TA-A
* * *
92273840 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGT-GACAAGAGAGCTACGAGATAA
* * * * *
92273904 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGGTGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCAT-GTGACAAGAGAGCTACGAGAT
92273969 AA
62 AA
* * *
92273971 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGTGTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTG-ACAAGAGAGCT
92274025 GAACTATGTG
Statistics
Matches: 151, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
62 3 0.02
63 18 0.12
64 25 0.17
65 2 0.01
66 23 0.15
67 31 0.21
68 48 0.32
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTGACAAGAGAGCTACGAGATAA
Found at i:92277513 original size:30 final size:30
Alignment explanation
Indices: 92277479--92277539 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
92277469 TTCCCGAGCC
92277479 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
92277509 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
92277539 T
1 T
92277540 TAGTTAAAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:92297001 original size:20 final size:20
Alignment explanation
Indices: 92296946--92297001 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
92296936 AGTTCATGCT
* *
92296946 AAGTAAATGAAATGGAAAGA
1 AAGTAAATGGAATGGTAAGA
*
92296966 AAGTAAACGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
92296986 AAGTAAATGGAGTGGT
1 AAGTAAATGGAATGGT
92297002 TCATAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.50, C:0.02, G:0.30, T:0.18
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:92303846 original size:24 final size:24
Alignment explanation
Indices: 92303810--92303971 Score: 96
Period size: 24 Copynumber: 6.8 Consensus size: 24
92303800 GAGCCAACAT
* *
92303810 TGGCACTAAGTGTGCGTATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
92303834 TGGCACTATGTGTGCGAAATCGAT
1 TGGCACTATGTGTGCGAATTTGAA
* *
92303858 TGGCACTATGTATGCTG-GTTTGAA
1 TGGCACTATGTGTGC-GAATTTGAA
* * ** ** * *
92303882 TGTCAATAAATAAGTGAATTTCCAA
1 TGGCACTATGTGTGCGAATTT-GAA
* * *
92303907 -AGCACTATGTGTGCG-GTTTAACA
1 TGGCACTATGTGTGCGAATTTGA-A
*
92303930 TGGCACTATGTGTGCGAATTTGAT
1 TGGCACTATGTGTGCGAATTTGAA
*
92303954 TAGCACTATGTGTGCGAA
1 TGGCACTATGTGTGCGAA
92303972 ATCGGTTGAG
Statistics
Matches: 99, Mismatches: 33, Indels: 12
0.69 0.23 0.08
Matches are distributed among these distances:
22 1 0.01
23 5 0.05
24 86 0.87
25 7 0.07
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:92307779 original size:18 final size:18
Alignment explanation
Indices: 92307740--92307872 Score: 191
Period size: 18 Copynumber: 7.5 Consensus size: 18
92307730 AATGATATGT
*
92307740 AATCCTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
92307757 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
92307775 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
92307792 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
92307810 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
92307827 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
92307845 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
92307864 AATCTTAGA
1 AATCTTAGA
92307873 AGATATGATT
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
17 44 0.43
18 48 0.47
19 11 0.11
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:92307785 original size:35 final size:35
Alignment explanation
Indices: 92307731--92307872 Score: 230
Period size: 35 Copynumber: 4.0 Consensus size: 35
92307721 ATAATCTTCA
* * *
92307731 ATGATATGTAATCCTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
92307767 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
92307802 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
92307837 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
92307873 AGATATGATT
Statistics
Matches: 101, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
35 83 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:92308373 original size:17 final size:17
Alignment explanation
Indices: 92308353--92308412 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
92308343 CCAATAGATT
92308353 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
92308370 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
92308386 -TATATTTTTTATTATATA
1 TTATATTTTTTA-TATA-A
92308404 TTATATTTT
1 TTATATTTT
92308413 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.23
16 6 0.17
17 12 0.34
18 1 0.03
19 8 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:92308397 original size:15 final size:16
Alignment explanation
Indices: 92308354--92308412 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 16
92308344 CAATAGATTT
92308354 TATATTTTTTATATAA
1 TATATTTTTTATATAA
92308370 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
92308386 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
92308404 TTATATTTT
1 -TATATTTT
92308413 AAATTTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.19
16 10 0.28
17 10 0.28
18 1 0.03
19 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:92308437 original size:26 final size:26
Alignment explanation
Indices: 92308389--92308438 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
92308379 TTATAAATAT
* * * *
92308389 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
92308415 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
92308439 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:92315283 original size:44 final size:44
Alignment explanation
Indices: 92315113--92315287 Score: 158
Period size: 44 Copynumber: 4.0 Consensus size: 44
92315103 AAGAAATAAG
* * *
92315113 ATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGTAG
1 ATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAC
* * * * * * ** **
92315157 ATCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTCAGC
1 ATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCAAAGATAGCA-C
** *
92315203 A--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAT
1 ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCAAAGATAGCAC
92315245 ATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCA
1 ATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCA
92315288 GATCTAACCT
Statistics
Matches: 102, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
42 2 0.02
43 12 0.12
44 75 0.74
45 12 0.12
46 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (44 bp):
ATTTGGCATCCCTGTGTTTATAGGGAACAGATCAAAGATAGCAC
Found at i:92315487 original size:119 final size:119
Alignment explanation
Indices: 92315276--92315875 Score: 1038
Period size: 119 Copynumber: 5.0 Consensus size: 119
92315266 AGGGAACAGA
* *
92315276 TCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
*
92315341 TTGTGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
*
92315395 TCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
92315460 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* *
92315514 TCAAATATAGCAGATCTAACCTTTAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
92315579 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* * *
92315633 TCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCTGATCCAAGATGATTTGGTATTC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* *
92315698 TTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
* *
92315752 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCC
1 TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
* * * * *
92315817 TTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTC
66 TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
92315871 TCAAA
1 TCAAA
92315876 CAGACTCAAG
Statistics
Matches: 459, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 459 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (119 bp):
TCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTC
TTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTC
Found at i:92315904 original size:83 final size:83
Alignment explanation
Indices: 92315799--92316151 Score: 607
Period size: 83 Copynumber: 4.2 Consensus size: 83
92315789 GAAGCAGATC
92315799 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
92315864 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
92315882 CAAGATGGTTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
92315947 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
92315965 CAAGATGGTTTGGCATCCTTATGTTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
92316030 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
92316048 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
92316113 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
92316132 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
92316152 ACAAATCGAA
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 179 0.70
84 77 0.30
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:92316587 original size:35 final size:35
Alignment explanation
Indices: 92316539--92316680 Score: 221
Period size: 35 Copynumber: 4.0 Consensus size: 35
92316529 ATAATCTTCA
* * *
92316539 ATGATATGTAATCTTAGATATGATACAATTTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
92316575 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
92316610 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
92316645 ATGATTTCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
92316681 AGATATGATT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 82 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:92316594 original size:18 final size:18
Alignment explanation
Indices: 92316548--92316680 Score: 191
Period size: 18 Copynumber: 7.5 Consensus size: 18
92316538 AATGATATGT
92316548 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* * *
92316565 AATTTTAAATATGATTGC
1 AATCTTAGATATGATTAC
92316583 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
92316600 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
92316618 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
92316635 AATCTTAGATATGATTTC
1 AATCTTAGATATGATTAC
92316653 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
92316672 AATCTTAGA
1 AATCTTAGA
92316681 AGATATGATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 44 0.43
18 47 0.46
19 11 0.11
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:92317220 original size:17 final size:17
Alignment explanation
Indices: 92317164--92317220 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 17
92317154 AATATATTTT
92317164 TATTTT-TTATATAATTA
1 TATTTTATTATAT-ATTA
*
92317181 TTATTCTTA-TAAATA-TA
1 -TATT-TTATTATATATTA
92317198 T-TTTTATTATATATTA
1 TATTTTATTATATATTA
92317214 TATTTTA
1 TATTTTA
92317221 AATTTATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
14 3 0.09
15 7 0.22
16 4 0.12
17 7 0.22
18 5 0.16
19 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTTATTATATATTA
Found at i:92317244 original size:26 final size:25
Alignment explanation
Indices: 92317197--92317245 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
92317187 TTATAAATAT
* * *
92317197 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
92317222 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
92317246 TTTATATGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:92332334 original size:96 final size:96
Alignment explanation
Indices: 92332165--92332355 Score: 267
Period size: 96 Copynumber: 2.0 Consensus size: 96
92332155 CATTTTGACC
* * *
92332165 GTCAACTTGTGTGAGCAAACCCAAGTTACCATGTTTCGGGTGCTGGTCTTGAATGTCCTACTAAT
1 GTCAACTTGTGTGAGCAAACCCAAGTTACCATGTTTCAGGTGCTGGTCCTAAATGTCCTACTAAT
92332230 GGCTAAGTTTCAGCATTTGTTACGAATACTT
66 GGCTAAGTTTCAGCATTTGTTACGAATACTT
* * * * *
92332261 GTCAGCTTGTGTGAGCAGACTCAAGTTACCATGTTTCAGGTGCTGGTCCTAAATGTCTTA-TCGA
1 GTCAACTTGTGTGAGCAAACCCAAGTTACCATGTTTCAGGTGCTGGTCCTAAATGTCCTACT-AA
* * *
92332325 TGGCTAAGTTTCGGCATTTGTTGCGGATACT
65 TGGCTAAGTTTCAGCATTTGTTACGAATACT
92332356 CATCATCTCG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 82 0.99
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (96 bp):
GTCAACTTGTGTGAGCAAACCCAAGTTACCATGTTTCAGGTGCTGGTCCTAAATGTCCTACTAAT
GGCTAAGTTTCAGCATTTGTTACGAATACTT
Found at i:92338933 original size:28 final size:28
Alignment explanation
Indices: 92338872--92338935 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
92338862 AAATCTGCTA
*
92338872 AAAATAAAAATAAAAATAAAAAGTAGTT
1 AAAATAAAAATAAAAACAAAAAGTAGTT
**
92338900 TCAATAAAAATTAAAAACATAAAA-TAG-T
1 AAAATAAAAA-TAAAAACA-AAAAGTAGTT
92338928 AAAATAAA
1 AAAATAAA
92338936 TATTTCTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
28 15 0.52
29 10 0.34
30 4 0.14
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (28 bp):
AAAATAAAAATAAAAACAAAAAGTAGTT
Found at i:92339987 original size:19 final size:19
Alignment explanation
Indices: 92339963--92340000 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
92339953 TATGAACCAA
92339963 ACTCAACCAACAAAATTCT
1 ACTCAACCAACAAAATTCT
92339982 ACTCAACCAACAAAATTCT
1 ACTCAACCAACAAAATTCT
92340001 TTTTGACAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (19 bp):
ACTCAACCAACAAAATTCT
Found at i:92340058 original size:23 final size:24
Alignment explanation
Indices: 92340032--92340086 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 24
92340022 ACATTGTAAG
92340032 GGCATG-AGGATGGGCATAATAAT
1 GGCATGAAGGATGGGCATAATAAT
*
92340055 GGCATGTGAATGATGGGCATAATAAT
1 GGCA--TGAAGGATGGGCATAATAAT
92340081 GGCATG
1 GGCATG
92340087 TGAATGACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.14
24 2 0.07
25 2 0.07
26 20 0.71
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.24
Consensus pattern (24 bp):
GGCATGAAGGATGGGCATAATAAT
Found at i:92340071 original size:26 final size:26
Alignment explanation
Indices: 92340040--92340093 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
92340030 AGGGCATGAG
92340040 GATGGGCATAATAATGGCATGTGAAT
1 GATGGGCATAATAATGGCATGTGAAT
92340066 GATGGGCATAATAATGGCATGTGAAT
1 GATGGGCATAATAATGGCATGTGAAT
92340092 GA
1 GA
92340094 CAAAAGAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.26
Consensus pattern (26 bp):
GATGGGCATAATAATGGCATGTGAAT
Found at i:92356308 original size:30 final size:30
Alignment explanation
Indices: 92356272--92356329 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
92356262 CACGGGTAGG
92356272 CACACAGGCGTATGGCCAGCCCGCGTGGCT
1 CACACAGGCGTATGGCCAGCCCGCGTGGCT
* * *
92356302 CACACAGGCGTGTGGCTAGCCCGTGTGG
1 CACACAGGCGTATGGCCAGCCCGCGTGG
92356330 AAATGCCCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.16, C:0.33, G:0.36, T:0.16
Consensus pattern (30 bp):
CACACAGGCGTATGGCCAGCCCGCGTGGCT
Found at i:92358122 original size:114 final size:114
Alignment explanation
Indices: 92357922--92358149 Score: 440
Period size: 114 Copynumber: 2.0 Consensus size: 114
92357912 ATTTCGGTGA
92357922 GGGAAAAACCAATTAGAAAGATGATACCATCTTTACTTTATTTTAATTTTAATTTTATTTATCAA
1 GGGAAAAACCAATTAGAAAGATGATACCATCTTTACTTTATTTTAATTTTAATTTTATTTATCAA
92357987 ATTACTAATTTAACATTTATCATTAACATTTAAAATCCACTAAATCATG
66 ATTACTAATTTAACATTTATCATTAACATTTAAAATCCACTAAATCATG
92358036 GGGAAAAACCAATTAGAAAGATGATACCATCTTTACTTTATTTTAATTTTAATTTTATTTATCAA
1 GGGAAAAACCAATTAGAAAGATGATACCATCTTTACTTTATTTTAATTTTAATTTTATTTATCAA
92358101 ATTACTAATTTAACCA-TTATCATTAACATTTAAAATCCACTAAATCATG
66 ATTACTAATTTAA-CATTTATCATTAACATTTAAAATCCACTAAATCATG
92358150 TCCAAATTTG
Statistics
Matches: 113, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
114 111 0.98
115 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (114 bp):
GGGAAAAACCAATTAGAAAGATGATACCATCTTTACTTTATTTTAATTTTAATTTTATTTATCAA
ATTACTAATTTAACATTTATCATTAACATTTAAAATCCACTAAATCATG
Found at i:92359571 original size:160 final size:160
Alignment explanation
Indices: 92359358--92359682 Score: 537
Period size: 160 Copynumber: 2.0 Consensus size: 160
92359348 TGTTTAGTAA
* *
92359358 GAAAATGGTCTGGTCATTTCCCAACTTTCAACTGGTCGATCTTATTCGTTATCCTCGAATCCCAA
1 GAAAATGGTCTGGTCATTTCCCAACTTTCAACTGGTCGATCTTACTCGTTATCCTCAAATCCCAA
*
92359423 ATTTCTTTGAGTGGGGATTCAAACAAATTGAACCAAGTGCACAAAATA-TTTTTTTCTTAACTTT
66 ATTTCTTTGAGTGGGGATTCAAACAAATTGAAACAAGTGCACAAAATATTTTTTTTCTTAACTTT
*
92359487 CAACGGA-AAAGTTAATTCTCTCTATAAACT
131 CAA-GGAGAAAGTTAATTCTCCCTATAAACT
*
92359517 GAAAATGGTCTAGGTCATTTCCCAACTTTCAACTGGTCTATCTTACTCGTTATCCTCAAATCCCA
1 GAAAATGGTCT-GGTCATTTCCCAACTTTCAACTGGTCGATCTTACTCGTTATCCTCAAATCCCA
* *
92359582 AATTTTTTTGAGTGGGGATTCAAACAAATTGAAACAAGTGCACAAAATATTTTTTTTCTTAATTT
65 AATTTCTTTGAGTGGGGATTCAAACAAATTGAAACAAGTGCACAAAATATTTTTTTTCTTAACTT
* *
92359647 TCAATGAGAAAGTTAATTCTCCCTATAAATT
130 TCAAGGAGAAAGTTAATTCTCCCTATAAACT
92359678 GAAAA
1 GAAAA
92359683 CTATGAGTAT
Statistics
Matches: 154, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
159 11 0.07
160 99 0.64
161 44 0.29
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (160 bp):
GAAAATGGTCTGGTCATTTCCCAACTTTCAACTGGTCGATCTTACTCGTTATCCTCAAATCCCAA
ATTTCTTTGAGTGGGGATTCAAACAAATTGAAACAAGTGCACAAAATATTTTTTTTCTTAACTTT
CAAGGAGAAAGTTAATTCTCCCTATAAACT
Found at i:92359901 original size:23 final size:23
Alignment explanation
Indices: 92359875--92359925 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
92359865 TTAAAGTGAG
92359875 AATTAAATT-AATAAGTATCAA-TA
1 AATTAAATTGAATAAG-A-CAATTA
*
92359898 AATT-TATTGAATAAGACAATTA
1 AATTAAATTGAATAAGACAATTA
92359920 AATTAA
1 AATTAA
92359926 TTTCCTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
21 3 0.13
22 10 0.43
23 10 0.43
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (23 bp):
AATTAAATTGAATAAGACAATTA
Found at i:92360002 original size:17 final size:17
Alignment explanation
Indices: 92359980--92360016 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
92359970 TTGGATATGG
*
92359980 ATTGAGAAAATAATTTA
1 ATTGAGAAAATAATATA
*
92359997 ATTGAGAAATTAATATA
1 ATTGAGAAAATAATATA
92360014 ATT
1 ATT
92360017 AATTAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (17 bp):
ATTGAGAAAATAATATA
Found at i:92365139 original size:21 final size:21
Alignment explanation
Indices: 92365108--92365160 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
92365098 AAAATAATGC
92365108 AAATATGTTAAT-ATCTA-ATTAT
1 AAATAT-TTAATGAT-TATATT-T
92365130 AAATATTTAATGATTATATTT
1 AAATATTTAATGATTATATTT
92365151 AAATATTTAA
1 AAATATTTAA
92365161 AATATAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (21 bp):
AAATATTTAATGATTATATTT
Found at i:92365604 original size:40 final size:40
Alignment explanation
Indices: 92365559--92365637 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
92365549 TTAAAGCATG
*
92365559 ATGTGGCAATACATGTGGATCACTAAAATACTACCACATC
1 ATGTGGCAATACATGTGGATCACTAAAATACCACCACATC
92365599 ATGTGGCAATACATGTGGATCACTAAAATACCACCACAT
1 ATGTGGCAATACATGTGGATCACTAAAATACCACCACAT
92365638 AGCACTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (40 bp):
ATGTGGCAATACATGTGGATCACTAAAATACCACCACATC
Found at i:92381406 original size:37 final size:37
Alignment explanation
Indices: 92381365--92381446 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
92381355 GTCCAATTGA
* *
92381365 AACACGCCAAATGCTCATAAGAGCTAATCCAACCAAT
1 AACACGCCAAATGCTCATAAGAGCCAATACAACCAAT
* * * *
92381402 AACACACCAAATGCTTATGAGAGCCAATACAACCGAT
1 AACACGCCAAATGCTCATAAGAGCCAATACAACCAAT
92381439 AACACGCC
1 AACACGCC
92381447 TCGGCACTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.43, C:0.30, G:0.12, T:0.15
Consensus pattern (37 bp):
AACACGCCAAATGCTCATAAGAGCCAATACAACCAAT
Found at i:92383349 original size:18 final size:18
Alignment explanation
Indices: 92383299--92383353 Score: 92
Period size: 18 Copynumber: 3.1 Consensus size: 18
92383289 CTTGGCCCAT
*
92383299 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAATCAG
*
92383317 AGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
92383335 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
92383353 T
1 T
92383354 ATGCAAGTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (18 bp):
TGCAGTAACAGTAATCAG
Found at i:92385831 original size:46 final size:46
Alignment explanation
Indices: 92385781--92385956 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
92385771 TGGTTGAGCA
92385781 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92385827 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
92385872 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92385920 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92385957 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92385937 original size:93 final size:93
Alignment explanation
Indices: 92385778--92385949 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92385768 GGATGGTTGA
* *
92385778 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92385843 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
92385871 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
92385936 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
92385950 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:92393358 original size:46 final size:46
Alignment explanation
Indices: 92393308--92393483 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
92393298 TGGTTGAGCA
92393308 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
92393354 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
92393399 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
92393447 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92393484 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92393469 original size:93 final size:93
Alignment explanation
Indices: 92393305--92393476 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
92393295 GGATGGTTGA
* *
92393305 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
92393370 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
92393398 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
92393463 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
92393477 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:92394860 original size:12 final size:13
Alignment explanation
Indices: 92394843--92394880 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
92394833 ATCCTGGAAT
92394843 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
92394855 ATTAAGAACACATA
1 ATTAAGAACA-AGA
92394869 ATTAAGAACAAG
1 ATTAAGAACAAG
92394881 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:92399923 original size:49 final size:49
Alignment explanation
Indices: 92399851--92399948 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
92399841 TTCTAATAGC
92399851 CTTAATCGAATTAGGGGGAGGTAGTTTTTCAATGGTTTCAATTTTAGAT
1 CTTAATCGAATTAGGGGGAGGTAGTTTTTCAATGGTTTCAATTTTAGAT
*
92399900 CTTAATCGAATTAGGGGGAGGTAGTTTTTTAATGGTTTCAATTTTAGAT
1 CTTAATCGAATTAGGGGGAGGTAGTTTTTCAATGGTTTCAATTTTAGAT
92399949 TTATCAACCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (49 bp):
CTTAATCGAATTAGGGGGAGGTAGTTTTTCAATGGTTTCAATTTTAGAT
Found at i:92404090 original size:12 final size:13
Alignment explanation
Indices: 92404073--92404110 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
92404063 ATCCTGGAAT
92404073 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
92404085 ATTAAGAACACATA
1 ATTAAGAACA-AGA
92404099 ATTAAGAACAAG
1 ATTAAGAACAAG
92404111 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:92408361 original size:22 final size:24
Alignment explanation
Indices: 92408333--92408376 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
92408323 ATAATTTTAA
*
92408333 AAAGTAAA-AGG-GTATAAAATTT
1 AAAGTAAATAGGAATATAAAATTT
92408355 AAAGTAAATAGGAATATAAAAT
1 AAAGTAAATAGGAATATAAAAT
92408377 GCAAGCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (24 bp):
AAAGTAAATAGGAATATAAAATTT
Found at i:92408891 original size:37 final size:37
Alignment explanation
Indices: 92408802--92408980 Score: 211
Period size: 37 Copynumber: 4.9 Consensus size: 37
92408792 TGTATAACTT
* * * * *
92408802 TTATAAGCATTTGGCATGTTATCGATTGGATTATCTC
1 TTATGAGCATTTAGCGTGTTATCAATTGGATTAGCTC
*
92408839 TT-TGAGCATTTAGCGTGTTATCAATTGGAATAGCTC
1 TTATGAGCATTTAGCGTGTTATCAATTGGATTAGCTC
* *
92408875 TTATGAGCACTTAGCGTGTTATC-ATCTGGATTAGCTT
1 TTATGAGCATTTAGCGTGTTATCAAT-TGGATTAGCTC
* *
92408912 TTATGAGCATTTGGCGTGTTATCAAATGGATTAGCTC
1 TTATGAGCATTTAGCGTGTTATCAATTGGATTAGCTC
* * *
92408949 TTATGAGCGTTTGGCGTGTT-TTAATTGGATTA
1 TTATGAGCATTTAGCGTGTTATCAATTGGATTA
92408981 CTTGTGTACT
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
36 42 0.34
37 80 0.65
38 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (37 bp):
TTATGAGCATTTAGCGTGTTATCAATTGGATTAGCTC
Found at i:92409746 original size:34 final size:34
Alignment explanation
Indices: 92409708--92409779 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
92409698 GTATAAATGT
92409708 GTATATTGGTTAGACACTTAAGATGATTGAAATA
1 GTATATTGGTTAGACACTTAAGATGATTGAAATA
*
92409742 GTATATTGGTTAGGCACTTAAGATGATTGAAATA
1 GTATATTGGTTAGACACTTAAGATGATTGAAATA
92409776 GTAT
1 GTAT
92409780 GATTTGAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (34 bp):
GTATATTGGTTAGACACTTAAGATGATTGAAATA
Found at i:92410688 original size:13 final size:13
Alignment explanation
Indices: 92410670--92410696 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
92410660 TTCATTATTA
92410670 TGTCTTTTGTAGT
1 TGTCTTTTGTAGT
92410683 TGTCTTTTGTAGT
1 TGTCTTTTGTAGT
92410696 T
1 T
92410697 ATATCTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.22, T:0.63
Consensus pattern (13 bp):
TGTCTTTTGTAGT
Found at i:92419602 original size:28 final size:26
Alignment explanation
Indices: 92419570--92419626 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 26
92419560 AGTGTTACAT
*
92419570 ATTTAATATAACAAGATGCATACAATAA
1 ATTT-ATACAACAAGA-GCATACAATAA
*
92419598 A-TT-TACGACAAGAGCATACAATAA
1 ATTTATACAACAAGAGCATACAATAA
92419622 ATTTA
1 ATTTA
92419627 CTCTTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
24 12 0.48
25 10 0.40
27 2 0.08
28 1 0.04
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (26 bp):
ATTTATACAACAAGAGCATACAATAA
Found at i:92419618 original size:24 final size:25
Alignment explanation
Indices: 92419580--92419627 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 25
92419570 ATTTAATATA
92419580 ACAAGATGCATACAATAAATTTACG
1 ACAAGATGCATACAATAAATTTACG
92419605 ACAAGA-GCATACAATAAATTTAC
1 ACAAGATGCATACAATAAATTTAC
92419628 TCTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.50, C:0.17, G:0.10, T:0.23
Consensus pattern (25 bp):
ACAAGATGCATACAATAAATTTACG
Found at i:92419961 original size:15 final size:16
Alignment explanation
Indices: 92419941--92419973 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
92419931 TTTAAAATTT
92419941 ATAAAAAAAA-ATTGA
1 ATAAAAAAAATATTGA
92419956 ATAAAAAAAATATTGA
1 ATAAAAAAAATATTGA
92419972 AT
1 AT
92419974 GGTATTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (16 bp):
ATAAAAAAAATATTGA
Found at i:92419964 original size:16 final size:16
Alignment explanation
Indices: 92419943--92419973 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92419933 TAAAATTTAT
92419943 AAAAAAAAATTGAATA
1 AAAAAAAAATTGAATA
*
92419959 AAAAAAATATTGAAT
1 AAAAAAAAATTGAAT
92419974 GGTATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (16 bp):
AAAAAAAAATTGAATA
Found at i:92420741 original size:28 final size:28
Alignment explanation
Indices: 92420710--92420772 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
92420700 TCCCATATTA
92420710 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
92420738 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
92420766 ATGGGGT
1 ATGGGGT
92420773 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:92421047 original size:36 final size:36
Alignment explanation
Indices: 92421000--92421077 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
92420990 AAAATAGCTA
* * *
92421000 AAAAATTCTAAAAATAAAAAATTATACTTTTTTAAT
1 AAAAATACTAAAAATAAAAAATTATACATTTTTAAG
*
92421036 AAAAATACTAAAAATAAGAAATTATACATTTTTAAG
1 AAAAATACTAAAAATAAAAAATTATACATTTTTAAG
92421072 AAAAAT
1 AAAAAT
92421078 TAAAATTATG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (36 bp):
AAAAATACTAAAAATAAAAAATTATACATTTTTAAG
Found at i:92425476 original size:21 final size:21
Alignment explanation
Indices: 92425446--92425501 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
92425436 AGCAGCGGTG
* *
92425446 GCGGTAAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
92425467 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
92425488 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
92425502 AATAATGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:92427421 original size:7 final size:7
Alignment explanation
Indices: 92427409--92427462 Score: 74
Period size: 7 Copynumber: 7.6 Consensus size: 7
92427399 TGTATAATTT
92427409 TATTAAA
1 TATTAAA
92427416 TATTAAA
1 TATTAAA
92427423 TATTAAA
1 TATTAAA
92427430 TATTAAA
1 TATTAAA
92427437 TATTAAAA
1 TATT-AAA
*
92427445 TAATATAA
1 TATTA-AA
92427453 TA-TAAA
1 TATTAAA
92427459 TATT
1 TATT
92427463 TTTTAAAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
6 4 0.09
7 29 0.67
8 10 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TATTAAA
Found at i:92427947 original size:31 final size:30
Alignment explanation
Indices: 92427890--92427948 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
92427880 GTAAATACTC
* * * *
92427890 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAAGGACTAAAGTGCAAATATGA
92427920 AAAAGTTGAAGGACTAATAGTGCAAATAT
1 AAAAGTTGAAGGACTAA-AGTGCAAATAT
92427949 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAAGTTGAAGGACTAAAGTGCAAATATGA
Found at i:92430069 original size:19 final size:19
Alignment explanation
Indices: 92430045--92430082 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
92430035 AAGAGTAATA
92430045 AATTCAAGTAAAACATGTT
1 AATTCAAGTAAAACATGTT
92430064 AATTCAAGTAAAACATGTT
1 AATTCAAGTAAAACATGTT
92430083 GAGAACGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (19 bp):
AATTCAAGTAAAACATGTT
Found at i:92432470 original size:15 final size:15
Alignment explanation
Indices: 92432450--92432481 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
92432440 ACATTCGGCC
92432450 ATAGGAAGGTGAAGT
1 ATAGGAAGGTGAAGT
92432465 ATAGGAAGGTGAAGT
1 ATAGGAAGGTGAAGT
92432480 AT
1 AT
92432482 GAATGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.38, T:0.22
Consensus pattern (15 bp):
ATAGGAAGGTGAAGT
Found at i:92434689 original size:7 final size:7
Alignment explanation
Indices: 92434677--92434725 Score: 98
Period size: 7 Copynumber: 7.0 Consensus size: 7
92434667 AGTACATAGA
92434677 TTAAATT
1 TTAAATT
92434684 TTAAATT
1 TTAAATT
92434691 TTAAATT
1 TTAAATT
92434698 TTAAATT
1 TTAAATT
92434705 TTAAATT
1 TTAAATT
92434712 TTAAATT
1 TTAAATT
92434719 TTAAATT
1 TTAAATT
92434726 AGAATATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTAAATT
Found at i:92439128 original size:2 final size:2
Alignment explanation
Indices: 92439123--92439152 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
92439113 ACTTTAAACT
92439123 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92439153 ACTTATGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:92439292 original size:12 final size:12
Alignment explanation
Indices: 92439277--92439315 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
92439267 ATTTATTTAC
92439277 TACTTTATATAT
1 TACTTTATATAT
92439289 TACTTTA-A-AT
1 TACTTTATATAT
*
92439299 TATTTTATATAT
1 TACTTTATATAT
92439311 TACTT
1 TACTT
92439316 GCTTTAGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 8 0.35
11 2 0.09
12 13 0.57
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (12 bp):
TACTTTATATAT
Found at i:92439295 original size:20 final size:21
Alignment explanation
Indices: 92439275--92439315 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
92439265 TTATTTATTT
92439275 ACTACTTTATATATTACTTTAA
1 ACTACTTTATATATTACTTT-A
* *
92439297 ATTATTTTATATATTACTT
1 ACTACTTTATATATTACTT
92439316 GCTTTAGGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (21 bp):
ACTACTTTATATATTACTTTA
Found at i:92440184 original size:33 final size:33
Alignment explanation
Indices: 92440142--92440208 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
92440132 CAAGGCAATA
92440142 TTTGGCGTTTGAAAATTTCGAGAAATTGTGCCC
1 TTTGGCGTTTGAAAATTTCGAGAAATTGTGCCC
*
92440175 TTTGGCGTTTGGAAATTTCGAGAAATTGTGCCC
1 TTTGGCGTTTGAAAATTTCGAGAAATTGTGCCC
92440208 T
1 T
92440209 ACGTGTTGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.37
Consensus pattern (33 bp):
TTTGGCGTTTGAAAATTTCGAGAAATTGTGCCC
Found at i:92444293 original size:23 final size:23
Alignment explanation
Indices: 92444267--92444312 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
92444257 GTTAGAAGAA
92444267 AAGTTCAGAGTGATGGAAAGTGC
1 AAGTTCAGAGTGATGGAAAGTGC
92444290 AAGTTCAGAGTGATGGAAAGTGC
1 AAGTTCAGAGTGATGGAAAGTGC
92444313 TGACTATCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.22
Consensus pattern (23 bp):
AAGTTCAGAGTGATGGAAAGTGC
Found at i:92453364 original size:23 final size:22
Alignment explanation
Indices: 92453313--92453364 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
92453303 GGGGAATTTT
* *
92453313 TTTATTTAAAATTGTCTTGTCA
1 TTTATTTAAAATTGTCATATCA
*
92453335 TTTATTTAAAATTGTTCATATTA
1 TTTATTTAAAATTG-TCATATCA
92453358 TTTATTT
1 TTTATTT
92453365 CATTTTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (22 bp):
TTTATTTAAAATTGTCATATCA
Found at i:92466860 original size:17 final size:17
Alignment explanation
Indices: 92466838--92466871 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
92466828 CGAGGTAGAC
92466838 AAAGAAAAGGTAAATGT
1 AAAGAAAAGGTAAATGT
92466855 AAAGAAAAGGTAAATGT
1 AAAGAAAAGGTAAATGT
92466872 TATTGAGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.18
Consensus pattern (17 bp):
AAAGAAAAGGTAAATGT
Found at i:92478111 original size:17 final size:17
Alignment explanation
Indices: 92478089--92478121 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
92478079 TAAGCCCTAA
92478089 GCCATAGTTTCGAATTT
1 GCCATAGTTTCGAATTT
92478106 GCCATAGTTTCGAATT
1 GCCATAGTTTCGAATT
92478122 CAATTTCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (17 bp):
GCCATAGTTTCGAATTT
Found at i:92479238 original size:12 final size:12
Alignment explanation
Indices: 92479221--92479245 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92479211 GACCTACCCT
92479221 ATAAAAAAGAGA
1 ATAAAAAAGAGA
92479233 ATAAAAAAGAGA
1 ATAAAAAAGAGA
92479245 A
1 A
92479246 AGAAAGAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
ATAAAAAAGAGA
Found at i:92479851 original size:20 final size:20
Alignment explanation
Indices: 92479823--92479863 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
92479813 CTGTACAAGG
*
92479823 AAAGGGAGAAAAATCCGTAT
1 AAAGAGAGAAAAATCCGTAT
92479843 AAAGAGAGAAAAATCCGTAT
1 AAAGAGAGAAAAATCCGTAT
92479863 A
1 A
92479864 TCATTTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.54, C:0.10, G:0.22, T:0.15
Consensus pattern (20 bp):
AAAGAGAGAAAAATCCGTAT
Found at i:92481504 original size:72 final size:72
Alignment explanation
Indices: 92481382--92481527 Score: 258
Period size: 72 Copynumber: 2.0 Consensus size: 72
92481372 CTACCAACTG
92481382 CAGTGCAGGAAATAAAAGTATCCTAGTTAGCATGTGTTTACTACGAAGAAGATCATGTTTTTGAT
1 CAGTGCAGGAAATAAAAGTATCCTAGTTAGCATGTGTTTACTACGAAGAAGATCATGTTTTTGAT
92481447 GAATGCC
66 GAATGCC
* *
92481454 CAGTGCAGGAAATGAAAGTATCCTAGTTAGCATGTGTTTACTGC-AGAGAAGATCATGTTTTTGA
1 CAGTGCAGGAAATAAAAGTATCCTAGTTAGCATGTGTTTACTACGA-AGAAGATCATGTTTTTGA
92481518 TGAATGCC
65 TGAATGCC
92481526 CA
1 CA
92481528 TCAAATCCAG
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
71 1 0.01
72 70 0.99
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (72 bp):
CAGTGCAGGAAATAAAAGTATCCTAGTTAGCATGTGTTTACTACGAAGAAGATCATGTTTTTGAT
GAATGCC
Found at i:92485628 original size:55 final size:53
Alignment explanation
Indices: 92485540--92485785 Score: 227
Period size: 55 Copynumber: 4.6 Consensus size: 53
92485530 CATTATGGTT
*
92485540 CAAGGATACCATGTAAGACCATGCCAATG-CATGGAAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAA-GACATGG-AATTGATAA-GTTTCTAAGG
* * * *
92485595 CAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTT--TCTAAGG
* * * *
92485650 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGATGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTTC-TAAGG
* * * * *
92485703 CAAGGATACGATGTAAGACCATGTCAAGACATGGAAATGGTAAGTTTC-CA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTTCTAAGG
* * *
92485753 -AAGGATACCATATAAGACCATGACAAGTCATGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG
92485786 CAATAGTAAG
Statistics
Matches: 160, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
49 29 0.18
52 6 0.04
53 39 0.24
54 12 0.08
55 70 0.44
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGATAAGTTTCTAAGG
Found at i:92485747 original size:108 final size:110
Alignment explanation
Indices: 92485548--92485748 Score: 293
Period size: 108 Copynumber: 1.8 Consensus size: 110
92485538 TTCAAGGATA
* *
92485548 CCATGTAAGACCATGCCAATGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGATAAGGTTTCTAAGGCAAGGATATCATGTAAGA
* *
92485613 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* *
92485658 CCATGTAAGACCATGCCAAGGCATGG-CATTGATGA-G-TTCATAAGGCAAGGATA-CGATGTAA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGATAAGGTTTC-TAAGGCAAGGATATC-ATGTAA
*
92485719 GACCATGTCAAGACATGGAAATGGTAAGTT
64 GACCATGTCAAGACATGGAAATGATAAGTT
92485749 TCCAAAGGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
107 4 0.05
108 47 0.57
109 6 0.07
110 25 0.30
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGATAAGGTTTCTAAGGCAAGGATATCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:92487121 original size:40 final size:40
Alignment explanation
Indices: 92487066--92487144 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
92487056 GGGGCGTTAC
* *
92487066 ATATATAGCCAAAGCTAT-TCTAATTCGCACACTAAGTGCT
1 ATATATAGCCAAAGCTATCTCGAAAT-GCACACTAAGTGCT
*
92487106 ATATATAGCCGAAGCTATCTCGAAATGCACACTAAGTGC
1 ATATATAGCCAAAGCTATCTCGAAATGCACACTAAGTGC
92487145 CAAACATAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 30 0.86
41 5 0.14
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (40 bp):
ATATATAGCCAAAGCTATCTCGAAATGCACACTAAGTGCT
Found at i:92489545 original size:30 final size:30
Alignment explanation
Indices: 92489490--92489551 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
92489480 CACTAAGCAA
92489490 GTTTCATATACATGTATCATCCATTTC-AT
1 GTTTCATATACATGTATCATCCATTTCTAT
92489519 GTTTCAATATATCATGTAAT-AT-CATTTCTAT
1 GTTTC-ATATA-CATGT-ATCATCCATTTCTAT
92489550 GT
1 GT
92489552 ATTTCATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 11 0.38
31 11 0.38
32 2 0.07
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (30 bp):
GTTTCATATACATGTATCATCCATTTCTAT
Found at i:92489738 original size:25 final size:25
Alignment explanation
Indices: 92489700--92489816 Score: 89
Period size: 25 Copynumber: 4.7 Consensus size: 25
92489690 TCCTGTACAT
*
92489700 GTATGCTCATACGAGCTATGAATCA
1 GTATGCTCATACGAGCTATAAATCA
92489725 GTATGCTC-TAACGAGCTATAAATC-
1 GTATGCTCAT-ACGAGCTATAAATCA
* * **
92489749 GATAAGCTCATACGAGCTGA-GAATTG
1 G-TATGCTCATACGAGCT-ATAAATCA
* * *
92489775 GTAAGCTC-TCACGAGCTACAAATCG
1 GTATGCTCAT-ACGAGCTATAAATCA
*
92489800 GTAAGCTCATACGAGCT
1 GTATGCTCATACGAGCT
92489817 GTAGTGTGTC
Statistics
Matches: 78, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
24 4 0.05
25 70 0.90
26 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATAAATCA
Found at i:92489783 original size:50 final size:51
Alignment explanation
Indices: 92489704--92489817 Score: 160
Period size: 50 Copynumber: 2.3 Consensus size: 51
92489694 GTACATGTAT
* *
92489704 GCTCATACGAGCT-ATGAATCAGTATGCTCTAACGAGCTATAAATCGATAA
1 GCTCATACGAGCTGATGAATCAGTAAGCTCTAACGAGCTACAAATCGATAA
** * *
92489754 GCTCATACGAGCTGA-GAATTGGTAAGCTCTCACGAGCTACAAATCGGTAA
1 GCTCATACGAGCTGATGAATCAGTAAGCTCTAACGAGCTACAAATCGATAA
92489804 GCTCATACGAGCTG
1 GCTCATACGAGCTG
92489818 TAGTGTGTCT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 56 0.98
51 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (51 bp):
GCTCATACGAGCTGATGAATCAGTAAGCTCTAACGAGCTACAAATCGATAA
Found at i:92494243 original size:25 final size:25
Alignment explanation
Indices: 92494213--92494264 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
92494203 CATGCATTTT
92494213 AGCTAATAGAAATCAATAGAGATTA
1 AGCTAATAGAAATCAATAGAGATTA
92494238 AGCTAATAGAAATCAATAGAGATTA
1 AGCTAATAGAAATCAATAGAGATTA
92494263 AG
1 AG
92494265 TTTTACGTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.08, G:0.17, T:0.23
Consensus pattern (25 bp):
AGCTAATAGAAATCAATAGAGATTA
Found at i:92494351 original size:53 final size:53
Alignment explanation
Indices: 92494271--92494374 Score: 208
Period size: 53 Copynumber: 2.0 Consensus size: 53
92494261 TAAGTTTTAC
92494271 GTCTTTTACGATTTAATGTTTTTCTTAGTTAACTAACTAAACATGAAAATTAT
1 GTCTTTTACGATTTAATGTTTTTCTTAGTTAACTAACTAAACATGAAAATTAT
92494324 GTCTTTTACGATTTAATGTTTTTCTTAGTTAACTAACTAAACATGAAAATT
1 GTCTTTTACGATTTAATGTTTTTCTTAGTTAACTAACTAAACATGAAAATT
92494375 GCCTGACCGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (53 bp):
GTCTTTTACGATTTAATGTTTTTCTTAGTTAACTAACTAAACATGAAAATTAT
Found at i:92496089 original size:46 final size:46
Alignment explanation
Indices: 92496032--92496124 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
92496022 AATATGATAT
*
92496032 GAGTATTGTTGATTTTATGTACACTATTTGAGATCTATATGTTGTG
1 GAGTATTGTTGATTTAATGTACACTATTTGAGATCTATATGTTGTG
92496078 GAGTATTGTTGATTTAATGTACACTATTTGAGATCTATATGTTGTG
1 GAGTATTGTTGATTTAATGTACACTATTTGAGATCTATATGTTGTG
92496124 G
1 G
92496125 CTATTTGAGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.46
Consensus pattern (46 bp):
GAGTATTGTTGATTTAATGTACACTATTTGAGATCTATATGTTGTG
Found at i:92497939 original size:20 final size:20
Alignment explanation
Indices: 92497904--92497960 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
92497894 TGACACGTGG
92497904 GATATGATAT-ACATGAT-T
1 GATATGATATCACATGATAT
92497922 GATATGATATGCACATGATAT
1 GATATGATAT-CACATGATAT
*
92497943 G-TATGAAATACACATGAT
1 GATATGATAT-CACATGAT
92497961 GAATTCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.65
21 2 0.06
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (20 bp):
GATATGATATCACATGATAT
Found at i:92498107 original size:25 final size:26
Alignment explanation
Indices: 92498010--92498132 Score: 214
Period size: 26 Copynumber: 4.8 Consensus size: 26
92498000 GAGGAAGTGC
*
92498010 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
92498036 GAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
92498062 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
92498088 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
92498113 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
92498133 ATTAAAAAGG
Statistics
Matches: 94, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 35 0.37
26 59 0.63
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:92499246 original size:23 final size:22
Alignment explanation
Indices: 92499180--92499251 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 22
92499170 TTTAAGTGGA
*
92499180 TGTGTTTGGAGGGTATATTTCGT
1 TGTGTTT-GAGGGTATATTTGGT
* * *
92499203 TCTGTTGGGAGGTTATATTTGGT
1 TGTGTT-TGAGGGTATATTTGGT
92499226 TGTGCTTTGAGGGTATATTTGGT
1 TGTG-TTTGAGGGTATATTTGGT
92499249 TGT
1 TGT
92499252 ATATTTGGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
23 38 0.95
24 2 0.05
ACGTcount: A:0.12, C:0.04, G:0.35, T:0.49
Consensus pattern (22 bp):
TGTGTTTGAGGGTATATTTGGT
Found at i:92499253 original size:12 final size:12
Alignment explanation
Indices: 92499238--92499263 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
92499228 TGCTTTGAGG
92499238 GTATATTTGGTT
1 GTATATTTGGTT
92499250 GTATATTTGGTT
1 GTATATTTGGTT
92499262 GT
1 GT
92499264 GTTGGAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (12 bp):
GTATATTTGGTT
Found at i:92499275 original size:22 final size:22
Alignment explanation
Indices: 92499250--92499358 Score: 89
Period size: 23 Copynumber: 4.9 Consensus size: 22
92499240 ATATTTGGTT
*
92499250 GTATATTTGGTTGTGTTGGAGG
1 GTATATTTGGTTGTGTTTGAGG
*
92499272 GTATATTTGGTTATGTTTTGAGG
1 GTATATTTGGTTGTG-TTTGAGG
*
92499295 GTATGTTTGGTTGACT-TTTGAGG
1 GTATATTTGGTTG--TGTTTGAGG
* *
92499318 GTA-AATTGGTTGTGTCTAGAGG
1 GTATATTTGGTTGTGT-TTGAGG
* *
92499340 CTATGA-TTGGTTTTGTTTG
1 GTAT-ATTTGGTTGTGTTTG
92499359 GTGGGTGATA
Statistics
Matches: 70, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
20 1 0.01
21 1 0.01
22 30 0.43
23 36 0.51
24 1 0.01
25 1 0.01
ACGTcount: A:0.16, C:0.03, G:0.34, T:0.48
Consensus pattern (22 bp):
GTATATTTGGTTGTGTTTGAGG
Found at i:92499277 original size:34 final size:35
Alignment explanation
Indices: 92499216--92499283 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 35
92499206 GTTGGGAGGT
*
92499216 TATATTTGGTTGTGCTTTGAGGGTATATTTGGTTG
1 TATATTTGGTTGTGCTTGGAGGGTATATTTGGTTG
92499251 TATATTTGGTTGTG-TTGGAGGGTATATTTGGTT
1 TATATTTGGTTGTGCTTGGAGGGTATATTTGGTT
92499284 ATGTTTTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 18 0.56
35 14 0.44
ACGTcount: A:0.15, C:0.01, G:0.32, T:0.51
Consensus pattern (35 bp):
TATATTTGGTTGTGCTTGGAGGGTATATTTGGTTG
Found at i:92499281 original size:57 final size:58
Alignment explanation
Indices: 92499192--92499307 Score: 171
Period size: 57 Copynumber: 2.0 Consensus size: 58
92499182 TGTTTGGAGG
* *
92499192 GTATATTTCGTTCTGTTGGGAGGTTATATTTGGTTGTGCTTTGAGGGTATATTTGGTT
1 GTATATTTCGTTCTGTTGGGAGGGTATATTTGGTTATGCTTTGAGGGTATATTTGGTT
* * * *
92499250 GTATATTTGGTTGTGTT-GGAGGGTATATTTGGTTATGTTTTGAGGGTATGTTTGGTT
1 GTATATTTCGTTCTGTTGGGAGGGTATATTTGGTTATGCTTTGAGGGTATATTTGGTT
92499307 G
1 G
92499308 ACTTTTGAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 37 0.71
58 15 0.29
ACGTcount: A:0.14, C:0.03, G:0.34, T:0.50
Consensus pattern (58 bp):
GTATATTTCGTTCTGTTGGGAGGGTATATTTGGTTATGCTTTGAGGGTATATTTGGTT
Found at i:92499318 original size:80 final size:80
Alignment explanation
Indices: 92499180--92499330 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
92499170 TTTAAGTGGA
* * * *
92499180 TGTGTTTGGAGGGTATATTTCGTTCTGTTGGGAGGTTATATTTGGTTGTGCTTTGAGGGTATATT
1 TGTGTTTGGAGGGTATATTTCGTTATGTTGGGAGGGTATATTTGGTTGTACTTTGAGGGTA-AAT
92499245 TGGTTGTATATTTGGT
65 TGGTTGTATATTTGGT
* ** *
92499261 TGTG-TTGGAGGGTATATTTGGTTATGTTTTGAGGGTATGTTTGGTTG-ACTTTTGAGGGTAAAT
1 TGTGTTTGGAGGGTATATTTCGTTATGTTGGGAGGGTATATTTGGTTGTAC-TTTGAGGGTAAAT
92499324 TGGTTGT
65 TGGTTGT
92499331 GTCTAGAGGC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 10 0.16
80 47 0.77
81 4 0.07
ACGTcount: A:0.15, C:0.03, G:0.34, T:0.48
Consensus pattern (80 bp):
TGTGTTTGGAGGGTATATTTCGTTATGTTGGGAGGGTATATTTGGTTGTACTTTGAGGGTAAATT
GGTTGTATATTTGGT
Found at i:92502167 original size:24 final size:24
Alignment explanation
Indices: 92502109--92502274 Score: 129
Period size: 24 Copynumber: 6.9 Consensus size: 24
92502099 ATTTAGGGTT
** *
92502109 ATTTCGATTTCAATTTTTATTTTG
1 ATTTCGATTTTGATTTTGATTTTG
* *
92502133 ATTTTGATTTTGATTTTTATTTTG
1 ATTTCGATTTTGATTTTGATTTTG
**
92502157 ATTTCGATTTTGATTTCAATTTTG
1 ATTTCGATTTTGATTTTGATTTTG
** * *
92502181 A-AACGCTCATTGATTTTGATTTTG
1 ATTTCGAT-TTTGATTTTGATTTTG
* * * * *
92502205 ATTTCAATTTCGA-TCTCAGTTTAG
1 ATTTCGATTTTGATTTTGA-TTTTG
**
92502229 ATTTTAATTTTGATTTTGATTTTG
1 ATTTCGATTTTGATTTTGATTTTG
*
92502253 ATTTCGATTTGGATTTTGATTT
1 ATTTCGATTTTGATTTTGATTT
92502275 AGGGTTATTT
Statistics
Matches: 109, Mismatches: 29, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
23 6 0.06
24 98 0.90
25 5 0.05
ACGTcount: A:0.21, C:0.07, G:0.13, T:0.58
Consensus pattern (24 bp):
ATTTCGATTTTGATTTTGATTTTG
Found at i:92502290 original size:6 final size:6
Alignment explanation
Indices: 92502121--92502274 Score: 105
Period size: 6 Copynumber: 25.7 Consensus size: 6
92502111 TTCGATTTCA
* * *
92502121 ATTTTT ATTTTG ATTTTG ATTTTG ATTTTT ATTTTG ATTTCG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
** *** * * ** *
92502169 ATTTCA ATTTTG A-AACG CTCATTG ATTTTG ATTTTG ATTTCA ATTTCG
1 ATTTTG ATTTTG ATTTTG AT-TTTG ATTTTG ATTTTG ATTTTG ATTTTG
* * * * * *
92502217 A-TCTC AGTTTAG ATTTTA ATTTTG ATTTTG ATTTTG ATTTCG ATTTGG
1 ATTTTG A-TTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
92502265 ATTTTG ATTT
1 ATTTTG ATTT
92502275 AGGGTTATTT
Statistics
Matches: 112, Mismatches: 32, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
5 3 0.03
6 104 0.93
7 5 0.04
ACGTcount: A:0.21, C:0.06, G:0.14, T:0.59
Consensus pattern (6 bp):
ATTTTG
Found at i:92503902 original size:25 final size:27
Alignment explanation
Indices: 92503861--92503915 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
92503851 AGTCAAACAT
92503861 GTATTTAGGTCAATTTAAC-CCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
* *
92503887 GTATTTCGGT-AATTTATCTCCTAGGG
1 GTATTTAGGTCAATTTAACTCCTAGGG
92503913 GTA
1 GTA
92503916 AAACTGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (27 bp):
GTATTTAGGTCAATTTAACTCCTAGGG
Found at i:92505434 original size:32 final size:32
Alignment explanation
Indices: 92505397--92505489 Score: 168
Period size: 32 Copynumber: 2.9 Consensus size: 32
92505387 AATGCTTACG
*
92505397 ATGCCCATCATCCGTTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
92505429 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
92505461 ATGCCGATCATCCATTAACTATTAAAATG
1 ATGCCCATCATCCATTAACTATTAAAATG
92505490 ATAAAATGCA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:92505632 original size:10 final size:10
Alignment explanation
Indices: 92505617--92505644 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
92505607 TAGCCGATAG
92505617 CATTTTCAAA
1 CATTTTCAAA
92505627 CATTTTCAAA
1 CATTTTCAAA
92505637 CATTTTCA
1 CATTTTCA
92505645 CATAGGTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (10 bp):
CATTTTCAAA
Done.