Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 28 of 332
Found at i:8237429 original size:46 final size:46
Alignment explanation
Indices: 8237285--8237456 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
8237275 TTTGTGGGCT
* ** *
8237285 AGTGTAAAACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGA-AATGTA-AGCC
* * * * ** * *
8237331 ATTGTAAGACCATATCTGGAACATGGCATCGG-TATTGAAACATGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCT-TCGAAATGTAAGCC
*
8237379 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAAATGTAAGCC
*
8237425 AGTGTAAGACATGTTTGGGACATGCATCGGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT
8237457 ACATAATATG
Statistics
Matches: 98, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
46 53 0.54
47 25 0.26
48 19 0.19
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAAATGTAAGCC
Found at i:8245100 original size:46 final size:47
Alignment explanation
Indices: 8244920--8245182 Score: 149
Period size: 47 Copynumber: 5.7 Consensus size: 47
8244910 TTTGTGGGCT
* ** * *
8244920 AGTGTAAGA-CATGTCTGGGACAT-GTATATGCCACATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-GATGTA-AGCC
* * * ** * * *
8244966 AATGTAAAACCATGTCTGGGACATGGCATTGGCATTGAAACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACAGATGTA-AGCC
* * * *
8245014 AGTGTAAGA-CATATCTAGGACAT-GCATCAGCCTCCAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTACAGATGTAAGCC
* *
8245060 AGTGTAAGA-CATGTCTTGGACAT-GCATCGGCTACATGATGT--G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-GATGTAAGCC
* * *
8245103 AGCGTAAGACCATGTCTGGGACATGGGATCGACTTA-ACG-TG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACA-GATGTA-AGCC
8245150 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
8245183 ATTATACCCT
Statistics
Matches: 168, Mismatches: 36, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
43 8 0.05
44 16 0.10
45 13 0.08
46 52 0.31
47 59 0.35
48 19 0.11
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGATGTAAGCC
Found at i:8245951 original size:29 final size:28
Alignment explanation
Indices: 8245901--8245963 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
8245891 AGCCCTATGT
*
8245901 TGTCCACACGGGTAGACACATAGGCGTG
1 TGTCCACACGGCTAGACACATAGGCGTG
* *
8245929 TGTCACACACGGCTAGTCCCATAGGCGTG
1 TGTC-CACACGGCTAGACACATAGGCGTG
8245958 TTGTCC
1 -TGTCC
8245964 GGTCGTGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 4 0.13
29 22 0.73
30 4 0.13
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (28 bp):
TGTCCACACGGCTAGACACATAGGCGTG
Found at i:8248591 original size:4 final size:4
Alignment explanation
Indices: 8248578--8248612 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
8248568 TGGGTTTTTG
8248578 AATT -ATT AATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT
8248613 GAAGTTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:8250768 original size:408 final size:410
Alignment explanation
Indices: 8249951--8250771 Score: 1344
Period size: 408 Copynumber: 2.0 Consensus size: 410
8249941 TCATGTAACC
8249951 TCTTTTCAATTTTAATGAAAACAATTACTTTCCAAAAAAGAACAAAAAATCTTGTATGCATAGCT
1 TCTTTTCAATTTTAATGAAAACAATTACTTTCCAAAAAAGAACAAAAAATCTTGTATGCATAGCT
* * *
8250016 TTTACACCCTAGTGGAAAACTAGAGTTGTAGTGCATTGGGAGTGTCTTGACCAAATAAAAGCATT
66 TTTACACCCTAGTGCAAAACTAGAGTTGTACTGCATTAGGAGTGTCTTGACCAAATAAAAGCATT
* *
8250081 TTTTACCAAATAGAATATTTGTGGTGCGAGTGCACAAAAATTGAGAGAAATCTCATCTCATTAGA
131 TTTTACCAAAGAGAATATTTGTGGTGCGAGTGCACAAAAATTGAGAGAAATCTCATCTCACTAGA
** * * * * *
8250146 GCCAAACGGCATCCAGAAGGAGCTTAAGTAGAAAAAAAAAGGTTATTTGATTATTAGGTAACATG
196 GCCAAACAACATCCAAAAGGAGCTTAAGTAGAAAAAAAAAGCTTATCTAATTATTAGATAACATG
8250211 GTAAGGAACTCAATGTTGCTTAAGTAAAGTTTTGAGTTTAAGTCTTATAGATAAAAAAAAAAAAG
261 GTAAGGAACTCAATGTTGCTTAAGTAAAGTTTTGAGTTTAAGTCTTATAGATAAAAAAAAAAAAG
* * *
8250276 CAACGCTAAGAGTTTGTTTGATTCGTTGAATATAACATTACATCATGTAATCTCACATTTTGGAA
326 CAAAGCTAAGAGTGTGTTTGATTCGTTGAATATAACATTACATCATGTAATCTCACATTTTAGAA
*
8250341 TAAGATTACATTGTTTGAAT
391 TAAGATTACATTATTTGAAT
* *
8250361 TCTTTTCAATTTTAATGAAACCATTTACTTTCCAAAAAAGAACAAAAAATCTTGTATGCATAGCT
1 TCTTTTCAATTTTAATGAAAACAATTACTTTCCAAAAAAGAACAAAAAATCTTGTATGCATAGCT
* *
8250426 TTTACACTCTAGTGCAAAACTAGAGTTGTACTGCGTTAGGAGTGTCTTGACCAAATAAAAGCATT
66 TTTACACCCTAGTGCAAAACTAGAGTTGTACTGCATTAGGAGTGTCTTGACCAAATAAAAGCATT
* *
8250491 TTTTCCCAAAGAGAATA-TTGTGGTGTGAGTGCACAAAAATTGAGAGAAATCTCATCTCACTAGA
131 TTTTACCAAAGAGAATATTTGTGGTGCGAGTGCACAAAAATTGAGAGAAATCTCATCTCACTAGA
* * *
8250555 GCCAAACAACATCTAAAAGGAGCTTAAGTAGAGAAAAAAA-CTTATCTAATTATTAGATAACTTG
196 GCCAAACAACATCCAAAAGGAGCTTAAGTAGAAAAAAAAAGCTTATCTAATTATTAGATAACATG
*
8250619 GTAAGGAACTCAGTGTTGCTTAAGTAAAGTTTTGAGTTTCAA-TCTTATAGATAAAAAAAAAAAA
261 GTAAGGAACTCAATGTTGCTTAAGTAAAGTTTTGAGTTT-AAGTCTTATAGATAAAAAAAAAAAA
* *
8250683 GCAATAG-TAAGAGTGTGTTTGATTCGTTGAATATAACATTATATCATGTAATCTCATATTTTAG
325 GCAA-AGCTAAGAGTGTGTTTGATTCGTTGAATATAACATTACATCATGTAATCTCACATTTTAG
8250747 AATAAGATTACATTATTTGAAT
389 AATAAGATTACATTATTTGAAT
8250769 TCT
1 TCT
8250772 CAACATTCCA
Statistics
Matches: 381, Mismatches: 28, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
408 160 0.42
409 83 0.22
410 138 0.36
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (410 bp):
TCTTTTCAATTTTAATGAAAACAATTACTTTCCAAAAAAGAACAAAAAATCTTGTATGCATAGCT
TTTACACCCTAGTGCAAAACTAGAGTTGTACTGCATTAGGAGTGTCTTGACCAAATAAAAGCATT
TTTTACCAAAGAGAATATTTGTGGTGCGAGTGCACAAAAATTGAGAGAAATCTCATCTCACTAGA
GCCAAACAACATCCAAAAGGAGCTTAAGTAGAAAAAAAAAGCTTATCTAATTATTAGATAACATG
GTAAGGAACTCAATGTTGCTTAAGTAAAGTTTTGAGTTTAAGTCTTATAGATAAAAAAAAAAAAG
CAAAGCTAAGAGTGTGTTTGATTCGTTGAATATAACATTACATCATGTAATCTCACATTTTAGAA
TAAGATTACATTATTTGAAT
Found at i:8258652 original size:39 final size:39
Alignment explanation
Indices: 8258598--8258676 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
8258588 ATAACCTTTA
8258598 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
1 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
8258637 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
1 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
8258676 A
1 A
8258677 CAAAAGTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (39 bp):
AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
Found at i:8260057 original size:23 final size:21
Alignment explanation
Indices: 8260031--8260073 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 21
8260021 TTATATTAAA
8260031 ATTAAAAATAAAATATAAATATG
1 ATTAAAAATAAAA-A-AAATATG
8260054 ATTAAAAATAAAAAAAATAT
1 ATTAAAAATAAAAAAAATAT
8260074 ATATTTAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.30
22 1 0.05
23 13 0.65
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (21 bp):
ATTAAAAATAAAAAAAATATG
Found at i:8260060 original size:29 final size:27
Alignment explanation
Indices: 8260002--8260076 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 27
8259992 ACACAAATTG
* *
8260002 AAAATATAATAAAAAT-TAATTATATTA
1 AAAATA-AAAAAAAATATAAATATATTA
*
8260029 AAATTAAAAATAAAATATAAATATGATTA
1 AAAATAAAAA-AAAATATAAATAT-ATTA
8260058 AAAATAAAAAAAATATATA
1 AAAATAAAAAAAA-ATATA
8260077 TTTAGTATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 3 0.08
27 10 0.25
28 9 0.22
29 18 0.45
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (27 bp):
AAAATAAAAAAAAATATAAATATATTA
Found at i:8262047 original size:7 final size:7
Alignment explanation
Indices: 8262018--8262107 Score: 65
Period size: 7 Copynumber: 12.9 Consensus size: 7
8262008 ATCTTTTCAA
*
8262018 CTCAATA
1 CTCAATC
*
8262025 CTCAATA
1 CTCAATC
8262032 CTCAATC
1 CTCAATC
*
8262039 CTCACTC
1 CTCAATC
8262046 CTCAATC
1 CTCAATC
* *
8262053 TTCTATC
1 CTCAATC
*
8262060 CTCAATT
1 CTCAATC
* **
8262067 TTCGCTC
1 CTCAATC
*
8262074 CTTAATC
1 CTCAATC
8262081 CTCAATC
1 CTCAATC
8262088 CTCAATTC
1 CTCAA-TC
*
8262096 C-CAATT
1 CTCAATC
8262102 CTCAAT
1 CTCAAT
8262108 TATTAATTTT
Statistics
Matches: 63, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
6 2 0.03
7 58 0.92
8 3 0.05
ACGTcount: A:0.27, C:0.37, G:0.01, T:0.36
Consensus pattern (7 bp):
CTCAATC
Found at i:8262063 original size:28 final size:28
Alignment explanation
Indices: 8262018--8262093 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
8262008 ATCTTTTCAA
* *
8262018 CTCAATACTCAATACTCAATCCTCACTC
1 CTCAATCCTCAATCCTCAATCCTCACTC
* * ** *
8262046 CTCAATCTTCTATCCTCAATTTTCGCTC
1 CTCAATCCTCAATCCTCAATCCTCACTC
*
8262074 CTTAATCCTCAATCCTCAAT
1 CTCAATCCTCAATCCTCAAT
8262094 TCCCAATTCT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.26, C:0.37, G:0.01, T:0.36
Consensus pattern (28 bp):
CTCAATCCTCAATCCTCAATCCTCACTC
Found at i:8264157 original size:61 final size:61
Alignment explanation
Indices: 8264092--8264206 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 61
8264082 AAGACATTCC
* *
8264092 TTAACATTCAATACTCGA-CACAAAGGCTTTCATATCCAGAGTTTTGCCCTAAAGGCGTTCT
1 TTAACATTCAATACTC-ACCACAAAGGCTTTCATATCCAGAGTTTTACCATAAAGGCGTTCT
* * * * * *
8264153 TTAACATTTAGTACTCACCACAAATGTTTTCCTGTCCAGAGTTTTACCATAAAG
1 TTAACATTCAATACTCACCACAAAGGCTTTCATATCCAGAGTTTTACCATAAAG
8264207 ACATTCCTTA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
60 1 0.02
61 44 0.98
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.33
Consensus pattern (61 bp):
TTAACATTCAATACTCACCACAAAGGCTTTCATATCCAGAGTTTTACCATAAAGGCGTTCT
Found at i:8270859 original size:13 final size:13
Alignment explanation
Indices: 8270841--8270866 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8270831 GGAGTGGTGG
8270841 ATATGATATGAAA
1 ATATGATATGAAA
8270854 ATATGATATGAAA
1 ATATGATATGAAA
8270867 GAATATTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (13 bp):
ATATGATATGAAA
Found at i:8275846 original size:47 final size:47
Alignment explanation
Indices: 8275791--8275884 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
8275781 TTTGATTAGG
*
8275791 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTTTTTT
1 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
8275838 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
1 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
8275885 CTTATTGTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.16, C:0.06, G:0.26, T:0.52
Consensus pattern (47 bp):
TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
Found at i:8279025 original size:53 final size:54
Alignment explanation
Indices: 8278957--8279070 Score: 151
Period size: 53 Copynumber: 2.1 Consensus size: 54
8278947 TTTGTTAAAT
* ** * * *
8278957 TTTTATAGAAGAAAATGAATCATGGTTGTTAAA-CAAGA-GAAATGTTTGAGTGG
1 TTTTATGGAAGAAAATGAATCATAATT-TTAAAGAAAAAGGAAATGTTTGAGTGA
8279010 TTTTATGGAAGAAAATGAATCATAATTTTAAAGAAAAAGGAAATGTTTGAGTGA
1 TTTTATGGAAGAAAATGAATCATAATTTTAAAGAAAAAGGAAATGTTTGAGTGA
8279064 TTTTATG
1 TTTTATG
8279071 AAAAATTTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
52 5 0.09
53 27 0.51
54 21 0.40
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (54 bp):
TTTTATGGAAGAAAATGAATCATAATTTTAAAGAAAAAGGAAATGTTTGAGTGA
Found at i:8279827 original size:53 final size:54
Alignment explanation
Indices: 8279758--8279865 Score: 150
Period size: 53 Copynumber: 2.0 Consensus size: 54
8279748 TTTGCTGAAT
* * *
8279758 TTTTATGGAAGAAAATGAATCAT-GATTGTT-AA-ATATGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATAG-TT-TTAAAGACAAGGGAAATGTTTGAGTGG
8279811 TTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
8279865 T
1 T
8279866 ATTATGGCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
52 2 0.04
53 26 0.53
54 21 0.43
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (54 bp):
TTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
Found at i:8280627 original size:53 final size:54
Alignment explanation
Indices: 8280558--8280669 Score: 165
Period size: 53 Copynumber: 2.1 Consensus size: 54
8280548 TTTGCTAAAT
* * * *
8280558 TTTTATGGAAGAAAATGAATCATGATTGTT-AA-ATATGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATAATT-TTAAAGACAAGGGAAATGTTTGAGTGG
8280611 TTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTGG
8280665 TTTTA
1 TTTTA
8280670 TGGCAAATTA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
52 2 0.04
53 27 0.51
54 24 0.45
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.35
Consensus pattern (54 bp):
TTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTGG
Found at i:8281373 original size:801 final size:801
Alignment explanation
Indices: 8278933--8281538 Score: 4703
Period size: 801 Copynumber: 3.3 Consensus size: 801
8278923 TTGTTAGAGA
* * * * * * *
8278933 GAGTGTTCATGTTGTTTGTTAAATTTTTATAGAAGAAAATGAATCATGGTTGTTAAACAAGAGAA
1 GAGTGTTCATATTGTTTGCTAAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
* * *
8278998 ATGTTTGAGTGGTTTTATGGAAGAAAATGAATCATAATTTTAAAGAAAAAGGAAATGTTTGAGTG
66 ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTG
* ** * *
8279063 ATTTTATGAAAAATTTCCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGG
131 GTTTTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
8279128 GAATTGTGGAAGTGGCCTTGTAACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACC
196 GAATTGTGGAAGTGGCCTTGTAACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACC
*
8279193 ACTAACCCGAGGTCAGATAAATTATTTTTAATATTATTTTATATGTTGTAGCATGATTATATGAG
261 ACTAACCCGAGGTCAGATAAATTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAG
8279258 TGCATGAAAATTTTGGTAAAATAATTTTAGCGATTGCATGCTTAATTACGAAAAAGGACTAAATC
326 TGCATGAAAATTTTGGTAAAATAATTTTAGCGATTGCATGCTTAATTACGAAAAAGGACTAAATC
8279323 GCATAAAGTGCAAAAGTTTTGTTCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTA
391 GCATAAAGTGCAAAAGTTTTGTTCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTA
8279388 GAGGTCTTTATTGAGTAAATAGACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTG
456 GAGGTCTTTATTGAGTAAATAGACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTG
8279453 TAAGGTCAAAGTTAGGTGAAATTTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAA
521 TAAGGTCAAAGTTAGGTGAAATTTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAA
*
8279518 AAGATATCACCTTTCATCTTTCTCCTCTACACCGAAAATACCAGAAAAAATAGGGGTTTTGGAGC
586 AAGATATCACCTTTCATCTTTCTCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGC
8279583 TTCAAAATTTCAGCCACTCTTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTT
651 TTCAAAATTTCAGCCACTCTTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTT
*
8279648 TTGTACTTTTGGGACCCTTATAGCATAATCTAGCTAATGAGGGGACTATTTTCTAAAATGGTTCA
716 TTGTACTTTTGGGACCCTTATAGCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCA
8279713 AAGTCTGTGGTTTTTCCATGT
781 AAGTCTGTGGTTTTTCCATGT
* *
8279734 GAGAGTTCATATTGTTTGCTGAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
1 GAGTGTTCATATTGTTTGCTAAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
*
8279799 ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTG
66 ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTG
*
8279864 GTATTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
131 GTTTTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
* * * * * * *
8279929 GAATTGTGGAAGTGGCCTTGTAACAACCTAATTTTGGGTCTAGTCGGGATAGTGGTTTCGAAACC
196 GAATTGTGGAAGTGGCCTTGTAACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACC
* * * *
8279994 ACTAACTCGAGGTCGGATAAATTATTTTTAATATTATTCTATGTGTTGTAGCATGATTATTTGAG
261 ACTAACCCGAGGTCAGATAAATTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAG
* ** *
8280059 TGCATGAAAATTTTGGTAAAATAATTTTAGCAATTGCATGCTTAATTGTGAAAAAGGACTAAATA
326 TGCATGAAAATTTTGGTAAAATAATTTTAGCGATTGCATGCTTAATTACGAAAAAGGACTAAATC
* * *
8280124 GCATAAAGTG-AGAAAGTTTTGTTCTACTAGCTAAATGTGTCAAATAG-TATGAAACATTAAATT
391 GCATAAAGTGCA-AAAGTTTTGTTCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATT
* * * *
8280187 AGACGTCTTTATTGAGTAAATAGACCACAAATTTATAAATAGCTGATCATAGGGACAAAGAAATT
455 AGAGGTCTTTATTGAGTAAATAGACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATT
* * *
8280252 GTAAGGTCAAAGTTAGGTGAAATTGGGTGACTAAATTGACTAGATTTGTAATAAAATAAAAATAA
520 GTAAGGTCAAAGTTAGGTGAAATTTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAA
* * * *
8280317 AAAGATATCACCTTTCATCTTTCTCTTGTCCACCAAAAATACCAGCAAAAATAGGGGTTTTGGAG
585 AAAGATATCACCTTTCATCTTTCTCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAG
8280382 CTTCAAAATTTCAGCCACTCTTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATT
650 CTTCAAAATTTCAGCCACTCTTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATT
8280447 TTTGTACTTTTGGGACCCTTATAGCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTC
715 TTTGTACTTTTGGGACCCTTATAGCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTC
8280512 AAAGTCTGTGGTTTTTCCATGT
780 AAAGTCTGTGGTTTTTCCATGT
8280534 GAGTGTTCATATTGTTTGCTAAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
1 GAGTGTTCATATTGTTTGCTAAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
8280599 ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTG
66 ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTG
8280664 GTTTTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
131 GTTTTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
8280729 GAATTGTGGAAGTGGCCTTGTAACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACC
196 GAATTGTGGAAGTGGCCTTGTAACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACC
*
8280794 ACTAACCCGAGGTTAGATAAATTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAG
261 ACTAACCCGAGGTCAGATAAATTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAG
8280859 TGCATGAAAATTTTGGTAAAATAATTTTAGCGATTGCATGCTTAATTACGAAAAAGGACTAAATC
326 TGCATGAAAATTTTGGTAAAATAATTTTAGCGATTGCATGCTTAATTACGAAAAAGGACTAAATC
8280924 GCATAAAGTGCAAAAGTTTTGTTCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTA
391 GCATAAAGTGCAAAAGTTTTGTTCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTA
8280989 GAGGTCTTTATTGAGTAAATAGACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTG
456 GAGGTCTTTATTGAGTAAATAGACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTG
8281054 TAAGGTCAAAGTTAGGTGAAATTTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAA
521 TAAGGTCAAAGTTAGGTGAAATTTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAA
8281119 AAGATATCACCTTTCATCTTTCTCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGC
586 AAGATATCACCTTTCATCTTTCTCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGC
8281184 TTCAAAATTTCAGCCACTCTTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTT
651 TTCAAAATTTCAGCCACTCTTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTT
8281249 TTGTACTTTTGGGACCCTTATAGCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCA
716 TTGTACTTTTGGGACCCTTATAGCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCA
8281314 AAGTCTGTGGTTTTTCCATGT
781 AAGTCTGTGGTTTTTCCATGT
*
8281335 GAGTGTTCATATTGTTTGCTGAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
1 GAGTGTTCATATTGTTTGCTAAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
*
8281400 ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTG
66 ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTG
8281465 GTTTTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
131 GTTTTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
8281530 GAATTGTGG
196 GAATTGTGG
8281539 GTGTAACACC
Statistics
Matches: 1715, Mismatches: 87, Indels: 6
0.95 0.05 0.00
Matches are distributed among these distances:
800 763 0.44
801 952 0.56
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (801 bp):
GAGTGTTCATATTGTTTGCTAAATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAA
ATGTTTGAGTGGTTTTACGGAAGAAAATGAATCATAATTTTAAAGACAAGGGAAATGTTTGAGTG
GTTTTATGGCAAATTACCCATATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAACAAGG
GAATTGTGGAAGTGGCCTTGTAACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACC
ACTAACCCGAGGTCAGATAAATTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAG
TGCATGAAAATTTTGGTAAAATAATTTTAGCGATTGCATGCTTAATTACGAAAAAGGACTAAATC
GCATAAAGTGCAAAAGTTTTGTTCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTA
GAGGTCTTTATTGAGTAAATAGACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTG
TAAGGTCAAAGTTAGGTGAAATTTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAA
AAGATATCACCTTTCATCTTTCTCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGC
TTCAAAATTTCAGCCACTCTTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTT
TTGTACTTTTGGGACCCTTATAGCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCA
AAGTCTGTGGTTTTTCCATGT
Found at i:8281428 original size:53 final size:54
Alignment explanation
Indices: 8281359--8281470 Score: 158
Period size: 53 Copynumber: 2.1 Consensus size: 54
8281349 TTTGCTGAAT
* * *
8281359 TTTTATGGAAGAAAATGAATCAT-GATTGTT-AA-ATATGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATAG-TT-TTAAAGACAAGGGAAATGTTTGAGTGG
8281412 TTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
8281466 TTTTA
1 TTTTA
8281471 TGGCAAATTA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
52 2 0.04
53 26 0.49
54 25 0.47
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (54 bp):
TTTTACGGAAGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
Found at i:8282294 original size:38 final size:38
Alignment explanation
Indices: 8282252--8282336 Score: 89
Period size: 40 Copynumber: 2.2 Consensus size: 38
8282242 CCACCCAACG
* * * * *
8282252 CACCATGTGGGGATAAAATCGACCTACCCATCCCTGCA
1 CACCATATGGAGATAAAATCGACCCACCCAACCCTACA
* *
8282290 CACCAAATATGGAGATAAAATTGACCCATCCAACCCTACA
1 CACC--ATATGGAGATAAAATCGACCCACCCAACCCTACA
8282330 CACCATA
1 CACCATA
8282337 AAGTATTGCA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
38 7 0.18
40 31 0.82
ACGTcount: A:0.36, C:0.33, G:0.13, T:0.18
Consensus pattern (38 bp):
CACCATATGGAGATAAAATCGACCCACCCAACCCTACA
Found at i:8284006 original size:21 final size:21
Alignment explanation
Indices: 8283928--8284010 Score: 121
Period size: 21 Copynumber: 4.0 Consensus size: 21
8283918 GAATCCTCTA
* *
8283928 GCTCCCAAGTAGCCTACTCTG
1 GCTCCCAAGTAGCCTCCTCCG
* *
8283949 GCTCCCAAGTAGCCTTCTCTG
1 GCTCCCAAGTAGCCTCCTCCG
*
8283970 GCTACCAAGTAGCCTCCTCCG
1 GCTCCCAAGTAGCCTCCTCCG
8283991 GCTCCCAAGTAGCCTCCTCC
1 GCTCCCAAGTAGCCTCCTCC
8284011 ATGCTATGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.17, C:0.42, G:0.18, T:0.23
Consensus pattern (21 bp):
GCTCCCAAGTAGCCTCCTCCG
Found at i:8285918 original size:27 final size:27
Alignment explanation
Indices: 8285873--8285927 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
8285863 TACCAAAGCA
8285873 AAAATCAGTCATTTACCCTCA-AGGGGT
1 AAAATCAGTCATTTACCCT-ATAGGGGT
*
8285900 AAAAT-AGTCATTTTTCCCTATAGGGGT
1 AAAATCAGTCA-TTTACCCTATAGGGGT
8285927 A
1 A
8285928 TTTTGGTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (27 bp):
AAAATCAGTCATTTACCCTATAGGGGT
Found at i:8290337 original size:26 final size:26
Alignment explanation
Indices: 8290308--8290360 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8290298 TCAAACATGC
8290308 ATTTAGGTCAACTTAAC-CCTAGGGGT
1 ATTTAGGT-AACTTAACTCCTAGGGGT
* * *
8290334 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAGGTAACTTAACTCCTAGGGGT
8290360 A
1 A
8290361 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (26 bp):
ATTTAGGTAACTTAACTCCTAGGGGT
Found at i:8291882 original size:26 final size:26
Alignment explanation
Indices: 8291846--8291949 Score: 190
Period size: 26 Copynumber: 4.0 Consensus size: 26
8291836 AATGCCCATC
8291846 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
8291872 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
8291898 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
8291924 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
8291950 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:8294737 original size:26 final size:27
Alignment explanation
Indices: 8294708--8294786 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
8294698 AACACACCAG
8294708 TATCGCAGCAAAGCTGCCAGTA-A-TAA
1 TATCGCAGCAAAGCTGCCAGTACAGT-A
* * *
8294734 TATCGCAGTAAGGCTACCAGTACAGTA
1 TATCGCAGCAAAGCTGCCAGTACAGTA
8294761 -AT-GCAGCAAAGCTGCCAGTATCAGTA
1 TATCGCAGCAAAGCTGCCAGTA-CAGTA
8294787 AATGTGGCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
25 15 0.34
26 26 0.59
27 2 0.05
28 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (27 bp):
TATCGCAGCAAAGCTGCCAGTACAGTA
Found at i:8299877 original size:66 final size:66
Alignment explanation
Indices: 8299762--8299893 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
8299752 TCCCTAAGTA
* *
8299762 AGATTAAGGAACTCCCGCCTCCGAGTGTCAATATAACTAGCCCCCACATACTTACTCTAGAAAGC
1 AGATTAAGGAACTCCCGCCTCCGAGCGTCAATATAACTAACCCCCACATACTTACTCTAGAAAGC
8299827 C
66 C
* *
8299828 AGATTAAGGAACTCCCGCCTCCGAGCGTCAATATAACTAACCCCTACATACTTACTCTGGAAAGC
1 AGATTAAGGAACTCCCGCCTCCGAGCGTCAATATAACTAACCCCCACATACTTACTCTAGAAAGC
8299893 C
66 C
8299894 GTCTTAAATA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (66 bp):
AGATTAAGGAACTCCCGCCTCCGAGCGTCAATATAACTAACCCCCACATACTTACTCTAGAAAGC
C
Found at i:8305203 original size:39 final size:40
Alignment explanation
Indices: 8305089--8305273 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
8305079 GCTACTCGTT
*
8305089 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
8305129 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
8305169 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
8305208 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
8305249 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8305274 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:8305257 original size:79 final size:81
Alignment explanation
Indices: 8305089--8305273 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
8305079 GCTACTCGTT
* *
8305089 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
8305153 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* ** *
8305170 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCTG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
8305232 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
8305249 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
8305274 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:8306570 original size:85 final size:85
Alignment explanation
Indices: 8306441--8306619 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
8306431 TATTTTATTG
8306441 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
8306506 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCATGTCCA
8306526 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
8306591 TAGCCATAACATCATGTCCA
66 TAGCCATAACATCATGTCCA
8306611 CCCATGCTC
1 CCCATGCTC
8306620 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCATGTCCA
Found at i:8317074 original size:48 final size:48
Alignment explanation
Indices: 8317003--8317236 Score: 206
Period size: 48 Copynumber: 4.9 Consensus size: 48
8316993 TTTGGGTGAT
* * *
8317003 ATGAGTGCCAGTGTAAAACCATGTCTGGGACATCGCATCGACCACAAC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACCACGAC
* ***
8317051 ATGAGAGCCAGTGTAAGACCATGTCTGGGAAATCGCATC-AGCCACCTT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGA-CCACGAC
* * * *
8317099 ATGAGAGCCAGTCG-AAGACCATGTCTGGGACAT-GACATTGACAATGAG
1 ATGAGAGCCAGT-GTAAGACCATGTCTGGGACATCG-CATCGACCACGAC
* * * * *
8317147 ACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCA-CTGGCCTCGAC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATC-GACCACGAC
* * * * * *
8317195 ATGTGAGCTAGTGTAAGACCATGTTTGGAATATGGCATCGAC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGAC
8317237 AATTCACCCT
Statistics
Matches: 151, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
47 3 0.02
48 144 0.95
49 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.21
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACCACGAC
Found at i:8324153 original size:25 final size:25
Alignment explanation
Indices: 8324124--8324208 Score: 64
Period size: 25 Copynumber: 3.2 Consensus size: 25
8324114 TGTTTGAGTG
8324124 GTTTTATGGAAGAACATGAATCATA
1 GTTTTATGGAAGAACATGAATCATA
* * ** * *
8324149 GTTTTAAAGACAAGGGAA-ATGTTTGAGTG
1 GTTTT-ATG-GAA--GAACATGAATCA-TA
8324178 GTTTTATGGAAGAACATGAATCATA
1 GTTTTATGGAAGAACATGAATCATA
8324203 GTTTTA
1 GTTTTA
8324209 AAGACAAGGG
Statistics
Matches: 42, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
25 15 0.36
26 7 0.17
27 4 0.10
28 7 0.17
29 9 0.21
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.34
Consensus pattern (25 bp):
GTTTTATGGAAGAACATGAATCATA
Found at i:8324169 original size:54 final size:54
Alignment explanation
Indices: 8324072--8324231 Score: 270
Period size: 54 Copynumber: 3.0 Consensus size: 54
8324062 TTTGCTGAAT
* * *
8324072 TTTTATGGAAGAAAATGAATCATGGTTGTT-AA-ACAAGGAAAATGTTTGAGTGG
1 TTTTATGGAAGAACATGAATCATAGTT-TTAAAGACAAGGGAAATGTTTGAGTGG
8324125 TTTTATGGAAGAACATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
1 TTTTATGGAAGAACATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
8324179 TTTTATGGAAGAACATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTG
1 TTTTATGGAAGAACATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTG
8324232 AGTGATTTTA
Statistics
Matches: 102, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
52 2 0.02
53 27 0.26
54 73 0.72
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.32
Consensus pattern (54 bp):
TTTTATGGAAGAACATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
Found at i:8324504 original size:26 final size:26
Alignment explanation
Indices: 8324468--8324520 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8324458 TGCATGCTTT
8324468 ATTGTGAAAAAGGACTAAATCGCATA
1 ATTGTGAAAAAGGACTAAATCGCATA
8324494 ATTGTGAAAAAGGACTAAATCGCATA
1 ATTGTGAAAAAGGACTAAATCGCATA
8324520 A
1 A
8324521 AATGCAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (26 bp):
ATTGTGAAAAAGGACTAAATCGCATA
Found at i:8324529 original size:26 final size:26
Alignment explanation
Indices: 8324474--8324529 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
8324464 CTTTATTGTG
* *
8324474 AAAAAGGACTAAATCGCATAATTGTG
1 AAAAAGGACTAAATCGCATAAATGTC
8324500 AAAAAGGACTAAATCGCATAAAATG-C
1 AAAAAGGACTAAATCGCAT-AAATGTC
8324526 AAAA
1 AAAA
8324530 GTTTTATTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.54, C:0.12, G:0.16, T:0.18
Consensus pattern (26 bp):
AAAAAGGACTAAATCGCATAAATGTC
Found at i:8325622 original size:48 final size:48
Alignment explanation
Indices: 8325544--8325870 Score: 234
Period size: 48 Copynumber: 6.8 Consensus size: 48
8325534 GGTGATATGA
* *
8325544 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACGTGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
* * * *
8325592 GTGCTAGTGTAAGACCATGCCTGGGGCATGGCATCAACATTGATGTGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
** * * * *
8325640 GTATTAGTGTAAAACCATGTCTGGGACATGGCATCGACCA-TAACATGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGACGTGT
* * * * *
8325688 GAGCTAGTGTTAGACCATGTCTGAGAAATGGCATC-ATCCACCTT-A--TGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA--CA--TTGACGTGT
* * * * * * *
8325736 GAGCCAGTGGAAGACCATGTCTGGGACATGGCATTGACAATGA-GACGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACG-TGT
* * * * * * * *
8325784 GAGCTAGTGTAAGGCCATGTCTAGGACATGGCATGGGCCTCGACATGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
* * * *
8325832 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGACA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA
8325871 ATTCACCCTC
Statistics
Matches: 219, Mismatches: 50, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 3 0.01
48 209 0.95
49 3 0.01
50 1 0.00
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
Found at i:8329760 original size:25 final size:25
Alignment explanation
Indices: 8329732--8329801 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
8329722 CTCTTTTAAT
*
8329732 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
8329757 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
8329782 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
8329802 AGCACTTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:8329872 original size:11 final size:11
Alignment explanation
Indices: 8329848--8329877 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8329838 AAATGTGAAT
8329848 ATATCATG-GC
1 ATATCATGTGC
8329858 ATATCATGTGC
1 ATATCATGTGC
8329869 ATATCATGT
1 ATATCATGT
8329878 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:8337633 original size:24 final size:24
Alignment explanation
Indices: 8337606--8337689 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
8337596 ATGGAGTCCT
8337606 AGCCTCTTTTAAT-AACTAGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
* *
8337630 AGCCCTTTTTGATAAACTTGGGCAA
1 AGCCC-TTTTAATAAACTAGGGCAA
**
8337655 AGCCCTTTTCGGTAAACTAGGGCAA
1 AGCCCTTTT-AATAAACTAGGGCAA
*
8337680 AACCCTTTTA
1 AGCCCTTTTA
8337690 GAACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 36 0.71
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:8337653 original size:25 final size:25
Alignment explanation
Indices: 8337619--8337688 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
8337609 CTCTTTTAAT
*
8337619 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
8337644 AACTTGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
8337669 AACTAGGGCAAAACCCTTTT
1 AACTAGGGCAAAGCCCTTTT
8337689 AGAACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:8337747 original size:10 final size:10
Alignment explanation
Indices: 8337734--8337769 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
8337724 CATATGTGAA
8337734 CATATCATGG
1 CATATCATGG
8337744 CATATCATGTG
1 CATATCATG-G
8337755 CATATCATGG
1 CATATCATGG
8337765 CATAT
1 CATAT
8337770 AATGTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (10 bp):
CATATCATGG
Found at i:8337760 original size:21 final size:21
Alignment explanation
Indices: 8337734--8337774 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8337724 CATATGTGAA
*
8337734 CATATCATGGCATATCATGTG
1 CATATCATGGCATATAATGTG
8337755 CATATCATGGCATATAATGT
1 CATATCATGGCATATAATGT
8337775 AAAAAAGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (21 bp):
CATATCATGGCATATAATGTG
Found at i:8345258 original size:29 final size:29
Alignment explanation
Indices: 8345225--8345324 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 29
8345215 ATAGTAAGTC
8345225 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* *
8345254 CGCACACTTAGTGC-TATATAATCAAAAT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
8345282 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
8345311 CGCACACTTAGTGC
1 CGCACACTTAGTGC
8345325 CAATCTCATG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 25 0.42
29 32 0.54
30 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:8345286 original size:28 final size:28
Alignment explanation
Indices: 8345225--8345298 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
8345215 ATAGTAAGTC
* *
8345225 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAAAT
8345254 CGCACACTTAGTGCTATATAATCAAAAT
1 CGCACACTTAGTGCTATATAATCAAAAT
*
8345282 TGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
8345299 GCAATTTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 28 0.67
29 14 0.33
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAAAT
Found at i:8356446 original size:28 final size:27
Alignment explanation
Indices: 8356368--8356472 Score: 78
Period size: 28 Copynumber: 4.0 Consensus size: 27
8356358 TTTTGAATTA
*
8356368 TTTAGATTT-TATGTTTTA-TTTATTT
1 TTTACATTTATATGTTTTATTTTATTT
* * * *
8356393 TTT--ATTTCTAT-TTGTACTTTAATT
1 TTTACATTTATATGTTTTATTTTATTT
* *
8356417 TTT-CTTGTTATTTGTTTTTATTTTATTT
1 TTTACAT-TTATATG-TTTTATTTTATTT
*
8356445 TTTAGATTTATATGTTTTATTTTATTT
1 TTTACATTTATATGTTTTATTTTATTT
8356472 T
1 T
8356473 ATCATATATT
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
23 8 0.13
24 12 0.19
25 4 0.06
26 4 0.06
27 14 0.23
28 19 0.31
29 1 0.02
ACGTcount: A:0.18, C:0.03, G:0.07, T:0.72
Consensus pattern (27 bp):
TTTACATTTATATGTTTTATTTTATTT
Found at i:8357118 original size:20 final size:20
Alignment explanation
Indices: 8357093--8357138 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
8357083 TGAGTAAGTT
8357093 AACTTGATTTGTTATTCTAA
1 AACTTGATTTGTTATTCTAA
8357113 AACTTGATTTGTTATTCTAA
1 AACTTGATTTGTTATTCTAA
8357133 AACTTG
1 AACTTG
8357139 CTTCAGTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (20 bp):
AACTTGATTTGTTATTCTAA
Found at i:8361419 original size:43 final size:43
Alignment explanation
Indices: 8361358--8361587 Score: 309
Period size: 43 Copynumber: 5.4 Consensus size: 43
8361348 TATGCAGCAC
* *
8361358 TAAAAAACGCCGCTAAAGACCAGGACATTTAGCGGCGCTCTTA
1 TAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
* *
8361401 TAAAAAACGCCGCTAAAGACCAGGACCTTTAGTGGCGCTCTTA
1 TAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
* * *
8361444 TAAAAAATGCCGCTAAAGACTAGGACCTTTAGCGGCGGTTTTA
1 TAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
* * * *
8361487 TAAAAAA-GCCGCTAAAGACCTGTACTTTTAGCGGCGCTTTTT
1 TAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
* * * * *
8361529 TAGAAAACGCCGCTAAAGACCTGCACTTTTAGCGGCGCTTTTT
1 TAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
8361572 TAAAAAACGCCGCTAA
1 TAAAAAACGCCGCTAA
8361588 TTTGCCCAGT
Statistics
Matches: 170, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 35 0.21
43 135 0.79
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (43 bp):
TAAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
Found at i:8361523 original size:85 final size:86
Alignment explanation
Indices: 8361358--8361587 Score: 302
Period size: 85 Copynumber: 2.7 Consensus size: 86
8361348 TATGCAGCAC
* *
8361358 TAAAAAACGCCGCTAAAGACCAGGACATTTAGCGGCGCTCTTATAAAAAACGCCGCTAAAGACCA
1 TAAAAAACGCCGCTAAAGACTAGGACATTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCA
*
8361423 GGACCTTTAGTGGCGCTCTTA
66 GGACCTTTAGCGGCGCTCTTA
* * * *
8361444 TAAAAAATGCCGCTAAAGACTAGGACCTTTAGCGGCGGTTTTATAAAAAA-GCCGCTAAAGACCT
1 TAAAAAACGCCGCTAAAGACTAGGACATTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCA
* * * *
8361508 GTACTTTTAGCGGCGCTTTTT
66 GGACCTTTAGCGGCGCTCTTA
* * * *
8361529 TAGAAAACGCCGCTAAAGACCT-GCACTTTTAGCGGCGCTTTTTTAAAAAACGCCGCTAA
1 TAAAAAACGCCGCTAAAGA-CTAGGACATTTAGCGGCGCTTTTATAAAAAACGCCGCTAA
8361588 TTTGCCCAGT
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
85 70 0.56
86 55 0.44
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (86 bp):
TAAAAAACGCCGCTAAAGACTAGGACATTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGACCA
GGACCTTTAGCGGCGCTCTTA
Found at i:8362495 original size:18 final size:18
Alignment explanation
Indices: 8362463--8362500 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
8362453 TACAATATAG
8362463 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
8362482 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
8362499 TA
1 TA
8362501 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:8363590 original size:25 final size:28
Alignment explanation
Indices: 8363556--8363606 Score: 72
Period size: 25 Copynumber: 1.9 Consensus size: 28
8363546 TATAAATAAA
8363556 AAATCATAAA-ATCTT-A-CTACATCAT
1 AAATCATAAATATCTTCATCTACATCAT
*
8363581 AAATCGTAAATATCTTCATCTACATC
1 AAATCATAAATATCTTCATCTACATC
8363607 CAGACGAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 5 0.23
27 1 0.05
28 7 0.32
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (28 bp):
AAATCATAAATATCTTCATCTACATCAT
Found at i:8369265 original size:466 final size:470
Alignment explanation
Indices: 8367669--8369390 Score: 3123
Period size: 476 Copynumber: 3.6 Consensus size: 470
8367659 TTATACAAAT
8367669 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAA-AAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
8367733 AATAATATCAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
66 AATAATATCAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
*
8367798 AAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGTG
131 AAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGTG
8367863 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
196 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
8367928 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
261 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
8367993 ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
326 ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
8368058 CAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAA
391 CAAAATAT--AAA--TA-T-ATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAA
8368123 AATTAGTTATAACTTTTAAAG
450 AATTAGTTATAACTTTTAAAG
*
8368144 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
*
8368209 AATAATATCAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGCTTATAT
66 AATAATATCAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
* *
8368274 AAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATTATACGTG
131 AAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGTG
**
8368339 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAAATT
196 GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
8368404 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
261 TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
* *
8368469 ATGGTAATAAAATTAATTCATACTTATTCATACTTACGTTGAATCAAATAATAATTAAGTTAAAC
326 ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
8368534 CAAAATATAAAAACTTATTCATACTTATTCATACTTCAAAATAATAATTAATACTATTTTGATAA
391 CAAAATAT--AAA--TA-T-ATACTTATTCATACTTC-AAATAATAATTAATACTATTTTGATAA
* *
8368599 AAATTAGTTATAACGTCTAAAG
449 AAATTAGTTATAACTTTTAAAG
8368621 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
8368686 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATC-AAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
8368751 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
130 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
8368816 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
195 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
*
8368881 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTGCATA
260 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
8368946 TATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTG-ATCAAATAATAATTAAGTTGAA
325 TATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAA
* *
8369010 CCAAAATAT-AA-A-A-ACTTATTCATACTTCAAATAATAATTTATACTGTTTTGATAAAAATTA
390 CCAAAATATAAATATATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAATTA
8369071 GTTATAACTTTTAAAG
455 GTTATAACTTTTAAAG
*
8369087 ACATTGAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
8369152 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATC-AAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
8369217 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
130 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
*
8369282 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCTGTCAGGT
195 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
8369347 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
260 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
8369391 TTGGAGAGAA
Statistics
Matches: 1221, Mismatches: 23, Indels: 15
0.97 0.02 0.01
Matches are distributed among these distances:
466 347 0.28
467 15 0.01
468 1 0.00
471 1 0.00
474 2 0.00
475 45 0.04
476 375 0.31
477 150 0.12
478 285 0.23
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (470 bp):
ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
AATAATATCAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATAT
AAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGTG
GCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTT
TCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAT
ATGGTAATAAAATTAATTCATACTTATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAAC
CAAAATATAAATATATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAATTAG
TTATAACTTTTAAAG
Found at i:8371006 original size:20 final size:20
Alignment explanation
Indices: 8370981--8371045 Score: 80
Period size: 20 Copynumber: 3.2 Consensus size: 20
8370971 TGAAATAAGC
8370981 TTAAAAATTTAGGAATGTAA
1 TTAAAAATTTAGGAATGTAA
**
8371001 TT-AAAATGTTAGGAA-AAACA
1 TTAAAAAT-TTAGGAATGTA-A
8371021 TTAAAAATTTAGGAATGTAA
1 TTAAAAATTTAGGAATGTAA
8371041 TTAAA
1 TTAAA
8371046 TGTTAATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 6 0.16
20 25 0.68
21 6 0.16
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.32
Consensus pattern (20 bp):
TTAAAAATTTAGGAATGTAA
Found at i:8373683 original size:15 final size:15
Alignment explanation
Indices: 8373663--8373694 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8373653 AAATAATAAT
*
8373663 TTATATATATTTATC
1 TTATATACATTTATC
8373678 TTATATACATTTATC
1 TTATATACATTTATC
8373693 TT
1 TT
8373695 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:8374752 original size:41 final size:41
Alignment explanation
Indices: 8374695--8374873 Score: 195
Period size: 41 Copynumber: 4.4 Consensus size: 41
8374685 GTTATATGAC
*
8374695 TTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
8374736 TTTTAGCGGTGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
** * * *
8374777 TTTTAGCGGCGTTTTAAGAAAAGCGCCGCTATTACTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
8374817 TTTTAGCGGCATTTTTTACTAAAA-CGCCGCT-GTGGCTCT-AT
1 TTTTAGCGGC--GTTTTACCAAAAGCGCCGCTAAT-GCTCTGGT
*
8374858 TTTTAGCGGCCTTTTA
1 TTTTAGCGGCGTTTTA
8374874 AGAACTTAAA
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
39 5 0.04
40 12 0.10
41 95 0.79
42 9 0.07
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:8374899 original size:44 final size:42
Alignment explanation
Indices: 8374754--8374899 Score: 145
Period size: 41 Copynumber: 3.5 Consensus size: 42
8374744 GTGTTTTACC
* * *
8374754 AAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTAAGA--
1 AAAA-CGCCGCTATTGCTCT-ATTTTTAGCGGCATTTTAAGACT
* * **
8374796 AAAGCGCCGCTATTACTCTATTTTTAGCGGCATTTT-TTACT
1 AAAACGCCGCTATTGCTCTATTTTTAGCGGCATTTTAAGACT
* * *
8374837 AAAACGCCGCTGTGGCTCTATTTTTAGCGGCCTTTTAAGAACTT
1 AAAACGCCGCTATTGCTCTATTTTTAGCGGCATTTTAAG-AC-T
8374881 AAAACGCCGCTATTGCTCT
1 AAAACGCCGCTATTGCTCT
8374900 GTATTTTAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 1 0.01
40 15 0.18
41 44 0.53
42 3 0.04
43 2 0.02
44 18 0.22
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (42 bp):
AAAACGCCGCTATTGCTCTATTTTTAGCGGCATTTTAAGACT
Found at i:8380930 original size:24 final size:24
Alignment explanation
Indices: 8380898--8380944 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
8380888 CTGTCAGGAG
*
8380898 AGGATTTAGGAGCTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
8380922 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
8380945 GGAAATCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:8382254 original size:28 final size:28
Alignment explanation
Indices: 8382214--8382278 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
8382204 ATGTACTAGA
*
8382214 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
8382242 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
8382270 ATACCCCTA
1 ATACCCCTA
8382279 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:8382485 original size:29 final size:28
Alignment explanation
Indices: 8382384--8382474 Score: 137
Period size: 28 Copynumber: 3.2 Consensus size: 28
8382374 AGGAAGCGTC
**
8382384 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCCCTGCCACAAATTATCTGTT
8382412 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCCCTGCCACAAATTATCTGTT
* *
8382440 CTGGTGGCGCTGCCACAAAATATCTGTAT
1 CTGGTGGCCCTGCCACAAATTATCTGT-T
8382469 CTGGTG
1 CTGGTG
8382475 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCCCTGCCACAAATTATCTGTT
Found at i:8382499 original size:56 final size:55
Alignment explanation
Indices: 8382384--8382499 Score: 135
Period size: 56 Copynumber: 2.1 Consensus size: 55
8382374 AGGAAGCGTC
* * *
8382384 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCGATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * * *
8382440 CTGGTGGCGCTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCGATGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
8382496 CTGG
1 CTGG
8382500 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
55 8 0.16
56 29 0.57
57 14 0.27
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCGATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:8388782 original size:24 final size:24
Alignment explanation
Indices: 8388750--8388796 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
8388740 CTGTTAGGAG
*
8388750 AGGATTTAGGAGCTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
8388774 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
8388797 GGAAATCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:8390087 original size:28 final size:28
Alignment explanation
Indices: 8390047--8390113 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
8390037 ATGTACTAGA
* *
8390047 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGAAAAATGACC-TCT
8390075 ATACCCCTATGTATGAAAAATGACCTCT
1 ATACCCCTATGTATGAAAAATGACCTCT
8390103 ATACCCCTATG
1 ATACCCCTATG
8390114 GTTAATTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 35 0.97
ACGTcount: A:0.34, C:0.27, G:0.09, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATGACCTCT
Found at i:8390258 original size:28 final size:29
Alignment explanation
Indices: 8390217--8390279 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 29
8390207 AGAAAGCGTC
8390217 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTAT
8390245 CTGGTGGCCT-TGCCACAAATTATCTGTAT
1 CTGGTGG-CTATGCCACAAATTATCTGTAT
8390274 CTGGTG
1 CTGGTG
8390280 ACTCTGTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 24 0.73
29 9 0.27
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAATTATCTGTAT
Found at i:8397538 original size:61 final size:61
Alignment explanation
Indices: 8397463--8397584 Score: 163
Period size: 61 Copynumber: 2.0 Consensus size: 61
8397453 GCTTATAAAA
* *** * * *
8397463 CTTTCCTATCTAGAGTTTTGCCTTAAAGGCATTCCTTAACATTCAATACTCGCCACAAAGG
1 CTTTCCTATCTAGAGTTTTACAACAAAGGAAATCCTTAACATTCAATACTCACCACAAAGG
* *
8397524 CTTTCCTGTCTAGAGTTTTACAACAAAGGAAATCCTTAACATTCAGTACTCACCACAAAGG
1 CTTTCCTATCTAGAGTTTTACAACAAAGGAAATCCTTAACATTCAATACTCACCACAAAGG
8397585 ATTCCTTCTC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (61 bp):
CTTTCCTATCTAGAGTTTTACAACAAAGGAAATCCTTAACATTCAATACTCACCACAAAGG
Found at i:8404790 original size:19 final size:20
Alignment explanation
Indices: 8404768--8404810 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
8404758 AATTTTACGC
8404768 AATTAATAA-ATAATAAAAT
1 AATTAATAATATAATAAAAT
*
8404787 AATTTATAATTTATAATAAAAT
1 AATTAATAA--TATAATAAAAT
8404809 AA
1 AA
8404811 AAAATGTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
22 12 0.60
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTAATAATATAATAAAAT
Found at i:8404852 original size:19 final size:19
Alignment explanation
Indices: 8404830--8404866 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8404820 GGAATAGTAT
*
8404830 ATATAGTAAAATATATAAC
1 ATATAATAAAATATATAAC
*
8404849 ATATAATAAAATTTATAA
1 ATATAATAAAATATATAA
8404867 ATAAAATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATAATAAAATATATAAC
Found at i:8404857 original size:10 final size:10
Alignment explanation
Indices: 8404830--8404921 Score: 55
Period size: 11 Copynumber: 8.8 Consensus size: 10
8404820 GGAATAGTAT
*
8404830 ATATAGTAAA
1 ATATAATAAA
*
8404840 ATAT-ATAAC
1 ATATAATAAA
8404849 ATATAATAAA
1 ATATAATAAA
8404859 ATTTATAAATAAA
1 A--TAT-AATAAA
*
8404872 ATGT-ATAATA
1 ATATAATAA-A
*
8404882 ATATAAATAAT
1 ATAT-AATAAA
*
8404893 ATATAAATAAT
1 ATAT-AATAAA
8404904 ATATAAATAAA
1 ATAT-AATAAA
8404915 A-ATAATA
1 ATATAATA
8404922 TATATTATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
9 15 0.22
10 15 0.22
11 24 0.35
12 7 0.10
13 7 0.10
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (10 bp):
ATATAATAAA
Found at i:8404879 original size:32 final size:32
Alignment explanation
Indices: 8404827--8404913 Score: 88
Period size: 32 Copynumber: 2.7 Consensus size: 32
8404817 TAAGGAATAG
* *
8404827 TATATATAGTAAAATATATAA-CATATAATAAAA
1 TATATA-AATAAAATATATAATAATATAA-AAAA
* * *
8404860 TTTATAAATAAAATGTATAATAATATAAATAA
1 TATATAAATAAAATATATAATAATATAAAAAA
*
8404892 TATATAAATAATATATA-AATAA
1 TATATAAATAAAATATATAATAA
8404914 AAATAATATA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
31 5 0.11
32 29 0.64
33 11 0.24
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (32 bp):
TATATAAATAAAATATATAATAATATAAAAAA
Found at i:8404895 original size:17 final size:16
Alignment explanation
Indices: 8404879--8404925 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 16
8404869 AAAATGTATA
8404879 ATAATATAAATAATAT
1 ATAATATAAATAATAT
8404895 ATAA-AT-AAT-ATAT
1 ATAATATAAATAATAT
*
8404908 A-AATAAAAATAATAT
1 ATAATATAAATAATAT
8404923 ATA
1 ATA
8404926 TTATTTTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
12 2 0.08
13 6 0.23
14 6 0.23
15 7 0.27
16 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAATATAAATAATAT
Found at i:8404898 original size:11 final size:11
Alignment explanation
Indices: 8404876--8404913 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
8404866 AATAAAATGT
8404876 ATAATAATATAA
1 ATAAT-ATATAA
8404888 ATAATATATAA
1 ATAATATATAA
8404899 ATAATATATAA
1 ATAATATATAA
8404910 ATAA
1 ATAA
8404914 AAATAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 21 0.81
12 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATAATATATAA
Found at i:8405534 original size:9 final size:9
Alignment explanation
Indices: 8405512--8405544 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8405502 ACTGGGCTGA
8405512 ACGCG-CAC
1 ACGCGCCAC
*
8405520 ATGCGCCAC
1 ACGCGCCAC
8405529 ACGCGCCAC
1 ACGCGCCAC
8405538 ACGCGCC
1 ACGCGCC
8405545 GCCATACACG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.21, C:0.52, G:0.24, T:0.03
Consensus pattern (9 bp):
ACGCGCCAC
Found at i:8406703 original size:44 final size:44
Alignment explanation
Indices: 8406590--8407078 Score: 584
Period size: 44 Copynumber: 11.1 Consensus size: 44
8406580 TCAGATTTGC
* * * * *
8406590 TATCTTTGATCTGCTCCCCGTCTAATATAGAGACACCAAATCTGT
1 TATCTTCGATCTGCTCTCTGTC-AATACAGAGACGCCAAATCTGT
* * * * * *
8406635 CAAC-TCTAACCTGCCCACTGTCAATACAGAGACGCCAAATCTGT
1 TATCTTC-GATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* * * * *
8406679 TATCTTCGATATGCTCTTTTTCAATATAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* *
8406723 TATCTTCGATCTGCTCTCTGTCACTACAGAGACTCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
*
8406767 TATCTTCGATCTGCTCTCTGTCAATACAGAGAAGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* * * * *
8406811 CATCTTTGATCTACTCTCTGTCAATACAGAGATGCCAAATCTAT
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* * * *
8406855 TATCTTCAATCTACTCTCTGTCATTACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* *
8406899 CATCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* * * *
8406943 CATCTTGGATCTGCTCTCTGTAAATACAGAGACACCAAATCTGT
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* * *
8406987 TGTCTTCGATCTGCTCTATGTCAATACAGAGACACCAAATCTGT
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
* * * *
8407031 CATCTTTGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
8407075 TATC
1 TATC
8407079 AGTGATCTAC
Statistics
Matches: 378, Mismatches: 64, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
44 364 0.96
45 14 0.04
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGT
Found at i:8419383 original size:40 final size:40
Alignment explanation
Indices: 8419337--8419523 Score: 204
Period size: 39 Copynumber: 4.7 Consensus size: 40
8419327 ACTACTTGCT
8419337 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
*
8419377 CAAATGCCTTCGGGACTCAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * * *
8419416 CCAATGCCTTCGAGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
8419456 CAATTGCCTTCGGG-TTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
8419495 CAAATGCCTTCAGGACTTAGCCCGATTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
8419524 CATTCGAATA
Statistics
Matches: 122, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 63 0.52
40 54 0.44
41 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:8419501 original size:79 final size:79
Alignment explanation
Indices: 8419337--8419518 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 79
8419327 ACTACTTGCT
* * *
8419337 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTCAGCCCG
1 CAAATGCCTTCGAGACTTAG-CCCGGATATAATAACTCGCACAAATGCCTTCGGGACTCAGCCCG
*
8419401 GTTCAATAACTCGCA
65 GTTCAATAACTAGCA
* * * *
8419416 CCAATGCCTTCGAGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGG-TTTAGCCCGG
1 CAAATGCCTTCGAGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTCAGCCCGG
* *
8419480 AATT-AGTCACTAGCA
66 --TTCAATAACTAGCA
8419495 CAAATGCCTTC-AGGACTTAGCCCG
1 CAAATGCCTTCGA-GACTTAGCCCG
8419519 ATTATCATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 9 0.10
79 76 0.86
80 3 0.03
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGAGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTCAGCCCGG
TTCAATAACTAGCA
Found at i:8427482 original size:40 final size:40
Alignment explanation
Indices: 8427437--8427623 Score: 222
Period size: 39 Copynumber: 4.7 Consensus size: 40
8427427 ACTACTTGCT
8427437 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
*
8427477 CAAATGCCTTCGGGACTCAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * *
8427516 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
8427556 CAATTGCCTTCGGG-TTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
8427595 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
8427624 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 64 0.51
40 56 0.45
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:8427540 original size:79 final size:78
Alignment explanation
Indices: 8427437--8427623 Score: 234
Period size: 79 Copynumber: 2.4 Consensus size: 78
8427427 ACTACTTGCT
*
8427437 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTCAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCGCACAAATGCCTTCGGG-CTCAGCCCG
*
8427501 G-TTCAATAACTCGCA
64 GATT-AATAACTAGCA
* * * * *
8427516 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGTTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTCAGCCCGG-
* *
8427581 ATTAGTCACTAGCA
65 ATTAATAACTAGCA
*
8427595 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
8427624 CATCCGAATA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 8 0.09
79 82 0.88
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTCAGCCCGGA
TTAATAACTAGCA
Found at i:8438188 original size:61 final size:61
Alignment explanation
Indices: 8438113--8438234 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
8438103 GCTTATAAAA
* *** * **
8438113 CTTTCCTATCTAGAGTTTTGCCTTAAAGGCATTCCTTAACATTCAATACTGGCCACAAAGG
1 CTTTCCTATCTAGAGTTTTACAACAAAGGCAATCCTTAACATTCAATACTCACCACAAAGG
* * *
8438174 CTTTCCTGTCTAGAGTTTTACAACAAAGGCAATCCTTAACATTTAGTACTCACCACAAAGG
1 CTTTCCTATCTAGAGTTTTACAACAAAGGCAATCCTTAACATTCAATACTCACCACAAAGG
8438235 ATTCCTTCTC
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (61 bp):
CTTTCCTATCTAGAGTTTTACAACAAAGGCAATCCTTAACATTCAATACTCACCACAAAGG
Found at i:8444623 original size:65 final size:69
Alignment explanation
Indices: 8444501--8444629 Score: 169
Period size: 71 Copynumber: 1.9 Consensus size: 69
8444491 CATAATATGC
* *
8444501 ATTATCATTTCATGCAGATATAATCATAGAAAACAATGAACATAACAATATAGATTACATAATAC
1 ATTATCATTTCATGCAAATATAATCATAGAAAACAATGAACAT---AATATAAATTACATAATAC
8444566 ATACATA
63 ATACATA
8444573 ATTAT-ATTTCATGCAAAATATAA-CATAGAAAACAATG-A-AT-ATATAAATTACATAATA
1 ATTATCATTTCATGC-AAATATAATCATAGAAAACAATGAACATAATATAAATTACATAATA
8444630 TAATATTATG
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
65 16 0.30
69 2 0.04
70 1 0.02
71 23 0.43
72 12 0.22
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (69 bp):
ATTATCATTTCATGCAAATATAATCATAGAAAACAATGAACATAATATAAATTACATAATACATA
CATA
Found at i:8445121 original size:21 final size:23
Alignment explanation
Indices: 8445095--8445149 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 23
8445085 TAATAAAATT
8445095 TATAAATAAAATG-T--ATAATAA
1 TATAAATAAAATGATAAATAAT-A
*
8445116 TATAAATAATATGATAAATAATA
1 TATAAATAAAATGATAAATAATA
8445139 TATAAATAAAA
1 TATAAATAAAA
8445150 ATAATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 12 0.41
22 1 0.03
23 11 0.38
24 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
TATAAATAAAATGATAAATAATA
Found at i:8445124 original size:12 final size:11
Alignment explanation
Indices: 8445109--8445147 Score: 60
Period size: 12 Copynumber: 3.4 Consensus size: 11
8445099 AATAAAATGT
8445109 ATAATAATATAA
1 ATAAT-ATATAA
8445121 ATAATATGATAA
1 ATAATAT-ATAA
8445133 ATAATATATAA
1 ATAATATATAA
8445144 ATAA
1 ATAA
8445148 AAATAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
ATAATATATAA
Found at i:8445132 original size:17 final size:16
Alignment explanation
Indices: 8445112--8445159 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
8445102 AAAATGTATA
8445112 ATAATATAAATAATAT
1 ATAATATAAATAATAT
8445128 GATAA-AT-AAT-ATAT
1 -ATAATATAAATAATAT
*
8445142 A-AATAAAAATAATAT
1 ATAATATAAATAATAT
8445157 ATA
1 ATA
8445160 TACTATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
12 2 0.08
13 2 0.08
14 7 0.27
15 8 0.31
16 3 0.12
17 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
ATAATATAAATAATAT
Found at i:8445153 original size:21 final size:20
Alignment explanation
Indices: 8445073--8445161 Score: 60
Period size: 23 Copynumber: 4.4 Consensus size: 20
8445063 TATATAGTAA
* *
8445073 AATATAT-AACAATAATAA-
1 AATATATAAATAAAAATAAT
* *
8445091 AATTTATAAAT-AAAATGTAT
1 AATATATAAATAAAAAT-AAT
*
8445111 AATAATATAAATAATATGATAAAT
1 AAT-ATATAAATAA-A-AAT-AAT
8445135 AATATATAAATAAAAATAAT
1 AATATATAAATAAAAATAAT
8445155 -ATATATA
1 AATATATA
8445162 CTATTTTTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
18 10 0.18
19 10 0.18
20 6 0.11
21 9 0.16
22 2 0.04
23 11 0.20
24 7 0.13
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (20 bp):
AATATATAAATAAAAATAAT
Found at i:8447255 original size:221 final size:218
Alignment explanation
Indices: 8446819--8447344 Score: 779
Period size: 221 Copynumber: 2.4 Consensus size: 218
8446809 CAGATCTGCT
* * * * * *
8446819 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTCATCTTCGACCTGCCCTTTGT
1 ATCTTCGATCTGCTCTCTGTC-AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGT
* * *
8446884 TAATACAGAGACGCCAAATCTGTTATCCTCGATCTGCTCTTTTTCAATACAGAGACGCCAAATCT
65 CAATACAGAGACGCCAAATCTGTTATCCTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCT
* * *
8446949 GCTATCTTCGATCTGCTCTGTCACTACAAAGACGCCAAATCTGTTATCTTTGATCAGCTCTCTAT
130 GCTATCTTCGATCTGCTCTGTCAATACAAAGACGCCAAATCTGTCATCTTCGATCAGCTCTCTAT
8447014 CAATACAGAGACGCCAAATCTATC
195 CAATACAGAGACGCCAAATCTATC
*
8447038 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTG-CTATCTTTGATCTGCTCTCTGT
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGT
* *
8447102 CAATACAGAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCTGT-AATACAGAGACGCCAAAT
65 CAATAC--AGAGACGCCAAATCTGTTATCCTCGATCTGCTCTCTGTCAATACAGAGACGCCAAAT
* * *
8447166 CTG-TCATCTTCGATCTGCTCTCTGTCAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTC
128 CTGCT-ATCTTCGATCTG--CTCTGTCAATACAAAGACGCCAAATCTGTCATCTTCGATCAGCTC
* *
8447230 TCTGTCAATACAGAGACGCCAAATCTGTC
190 TCTATCAATACAGAGACGCCAAATCTATC
*
8447259 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTCTCTGTC
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
8447324 AATACAGAGACGCCAAATCTG
66 AATACAGAGACGCCAAATCTG
8447345 CTATTGGTGA
Statistics
Matches: 278, Mismatches: 22, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
217 1 0.00
218 42 0.15
219 68 0.24
220 34 0.12
221 132 0.47
222 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (218 bp):
ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
AATACAGAGACGCCAAATCTGTTATCCTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTG
CTATCTTCGATCTGCTCTGTCAATACAAAGACGCCAAATCTGTCATCTTCGATCAGCTCTCTATC
AATACAGAGACGCCAAATCTATC
Found at i:8447357 original size:44 final size:44
Alignment explanation
Indices: 8446819--8447344 Score: 765
Period size: 44 Copynumber: 12.0 Consensus size: 44
8446809 CAGATCTGCT
* * *
8446819 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTC
1 ATCTTCGATCTGCTCTCTGTC-AATACAGAGACGCCAAATCTGTC
* * * * *
8446864 ATCTTCGACCTGCCCTTTGTTAATACAGAGACGCCAAATCTGTT
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
* * *
8446908 ATCCTCGATCTGCTCTTTTTCAATACAGAGACGCCAAATCTG-C
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
* * *
8446951 TATCTTCGATCTG--CTCTGTCACTACAAAGACGCCAAATCTGTT
1 -ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
* * * *
8446994 ATCTTTGATCAGCTCTCTATCAATACAGAGACGCCAAATCTATC
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
8447038 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTG-C
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
* *
8447081 TATCTTTGATCTGCTCTCTGTCAATACAGAGAGACGCCAAATCTGTT
1 -ATCTTCGATCTGCTCTCTGTCAATAC--AGAGACGCCAAATCTGTC
*
8447128 ATCTTTGATCTGCTCTCTGT-AATACAGAGACGCCAAATCTGTC
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
*
8447171 ATCTTCGATCTGCTCTCTGTCAATATAGAGACGCCAAATCTGTC
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
8447215 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
*
8447259 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTATC
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
8447303 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTG
1 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTG
8447345 CTATTGGTGA
Statistics
Matches: 433, Mismatches: 39, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
42 34 0.08
43 37 0.09
44 306 0.71
45 20 0.05
46 36 0.08
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (44 bp):
ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGTC
Found at i:8457619 original size:21 final size:23
Alignment explanation
Indices: 8457594--8457648 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 23
8457584 ATATAAAATT
8457594 TATAAATAAAATG-T--ATAATAA
1 TATAAATAAAATGATAAATAAT-A
*
8457615 TATAAATAATATGATAAATAATA
1 TATAAATAAAATGATAAATAATA
8457638 TATAAATAAAA
1 TATAAATAAAA
8457649 ATAATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 12 0.41
22 1 0.03
23 11 0.38
24 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
TATAAATAAAATGATAAATAATA
Found at i:8457623 original size:12 final size:11
Alignment explanation
Indices: 8457608--8457646 Score: 60
Period size: 12 Copynumber: 3.4 Consensus size: 11
8457598 AATAAAATGT
8457608 ATAATAATATAA
1 ATAAT-ATATAA
8457620 ATAATATGATAA
1 ATAATAT-ATAA
8457632 ATAATATATAA
1 ATAATATATAA
8457643 ATAA
1 ATAA
8457647 AAATAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 10 0.38
12 16 0.62
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
ATAATATATAA
Found at i:8457631 original size:17 final size:16
Alignment explanation
Indices: 8457557--8457658 Score: 53
Period size: 14 Copynumber: 6.7 Consensus size: 16
8457547 AAATGTAAGG
8457557 AATAATATAT-ATAGT-
1 AATAATATATAATA-TA
*
8457572 AA-AATATATAACATA
1 AATAATATATAATATA
*
8457587 TAA-AATTTATAA-ATA
1 -AATAATATATAATATA
*
8457602 AA-ATGTATAATAATATA
1 AATA-ATAT-ATAATATA
8457619 AATAATATGATAA-AT-
1 AATAATAT-ATAATATA
*
8457634 AAT-ATATA-AATAAA
1 AATAATATATAATATA
8457648 AATAATATATA
1 AATAATATATA
8457659 TTATTTTTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 21
0.71 0.07 0.22
Matches are distributed among these distances:
12 2 0.03
13 2 0.03
14 18 0.26
15 17 0.25
16 17 0.25
17 12 0.17
18 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (16 bp):
AATAATATATAATATA
Found at i:8457652 original size:21 final size:20
Alignment explanation
Indices: 8457594--8457659 Score: 55
Period size: 23 Copynumber: 3.1 Consensus size: 20
8457584 ATATAAAATT
*
8457594 TATAAAT-AAAATGTATAATAA
1 TATAAATAAAAAT-AATAAT-A
*
8457615 TATAAATAATATGATAAATAATA
1 TATAAATAA-A-AAT-AATAATA
8457638 TATAAATAAAAATAAT-ATA
1 TATAAATAAAAATAATAATA
8457657 TAT
1 TAT
8457660 TATTTTTACA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 6 0.16
20 3 0.08
21 9 0.24
22 2 0.05
23 11 0.29
24 7 0.18
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (20 bp):
TATAAATAAAAATAATAATA
Found at i:8472266 original size:77 final size:77
Alignment explanation
Indices: 8472128--8472280 Score: 182
Period size: 77 Copynumber: 2.0 Consensus size: 77
8472118 GTGGCCGGCC
* * * * * *
8472128 ATGTGGGTGGCCGTGTGTGAGACACAACCGTGTGTCTGACGAAGGTGTGGCTGTGCACAAGACAC
1 ATGTGGGTGGCCGTATGCGAGACACAACCGTGTGGCTAACGAAGATGTGGCTGTACACAAGACAC
**
8472193 GTGGGCTAGGCA
66 ACGGGCTAGGCA
* ** *
8472205 ATGTGGGTGGCTGTATGCGAGACATGACCGTGTGGCTAACGAAGATGTGGAC-GTACGCAAGACA
1 ATGTGGGTGGCCGTATGCGAGACACAACCGTGTGGCTAACGAAGATGTGG-CTGTACACAAGACA
8472269 CACGGGCTAGGC
65 CACGGGCTAGGC
8472281 CAAGTTAGAC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
77 62 0.98
78 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.38, T:0.20
Consensus pattern (77 bp):
ATGTGGGTGGCCGTATGCGAGACACAACCGTGTGGCTAACGAAGATGTGGCTGTACACAAGACAC
ACGGGCTAGGCA
Found at i:8472636 original size:26 final size:26
Alignment explanation
Indices: 8472602--8472655 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
8472592 ACATGTAAGC
*
8472602 ATGATAACTCTAATTATGTATGCCTG
1 ATGATAACTCTAATTATGTATGACTG
* *
8472628 ATGATAACTGTGATTATGTATGACTG
1 ATGATAACTCTAATTATGTATGACTG
8472654 AT
1 AT
8472656 TGGGTGGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (26 bp):
ATGATAACTCTAATTATGTATGACTG
Found at i:8473491 original size:43 final size:43
Alignment explanation
Indices: 8473429--8473510 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
8473419 GACATCTCCA
* * *
8473429 GATTCGGCCATAACGTCTAGGCCAGGTTTTGGGTTTTACTCTG
1 GATTCGGCCATAACATCTAGGCCAGGTTTGGGGTGTTACTCTG
*
8473472 GATTCGGCCATAATATCTAGGCCAGGTTTGGGGTGTTAC
1 GATTCGGCCATAACATCTAGGCCAGGTTTGGGGTGTTAC
8473511 AAGAAAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.18, C:0.20, G:0.29, T:0.33
Consensus pattern (43 bp):
GATTCGGCCATAACATCTAGGCCAGGTTTGGGGTGTTACTCTG
Found at i:8478508 original size:110 final size:111
Alignment explanation
Indices: 8478294--8478495 Score: 264
Period size: 110 Copynumber: 1.8 Consensus size: 111
8478284 TCAGAGGGTA
* * * * * *
8478294 CCATGGGATTTCTTCCACATGGTCTTATACATATTTTCATGTTGTAATTCGCCAGTCCAGTCTAC
1 CCATGGGATCTCTGCCACACGGTCTTATACATAATTTCATGTCGTAATTCACCAGTCCAGTCTAC
*
8478359 ATCTCACTAGAGGCATCACCATGAGTATTCTCACTATCATACAATG
66 ATCTCACTAGAGGCATCACCAAGAGTATTCTCACTATCATACAATG
* * *
8478405 CCATGGG-TCTCTGCCACACGGTCTTTTACATAATTTCATGTCGTGA-TCTACTAGTCCAGTCTA
1 CCATGGGATCTCTGCCACACGGTCTTATACATAATTTCATGTCGTAATTC-ACCAGTCCAGTCTA
** *
8478468 TGTCTCACTAGAGGCATCACTAAGAGTA
65 CATCTCACTAGAGGCATCACCAAGAGTA
8478496 ATTTCGTTAT
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
109 2 0.03
110 68 0.88
111 7 0.09
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (111 bp):
CCATGGGATCTCTGCCACACGGTCTTATACATAATTTCATGTCGTAATTCACCAGTCCAGTCTAC
ATCTCACTAGAGGCATCACCAAGAGTATTCTCACTATCATACAATG
Found at i:8481759 original size:16 final size:16
Alignment explanation
Indices: 8481738--8481782 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8481728 ATGTCTAAAA
8481738 GCATGATAGAGTCTCT
1 GCATGATAGAGTCTCT
8481754 GCATGAATA-AGTCTCT
1 GCATG-ATAGAGTCTCT
*
8481770 ACATGA-AGAGTCT
1 GCATGATAGAGTCT
8481783 GCGCATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 1 0.04
15 6 0.23
16 16 0.62
17 3 0.12
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (16 bp):
GCATGATAGAGTCTCT
Found at i:8481979 original size:54 final size:54
Alignment explanation
Indices: 8481896--8482033 Score: 177
Period size: 54 Copynumber: 2.6 Consensus size: 54
8481886 TGACAAGAAT
* * *
8481896 ACCATAAAGTGTAAGATCTAGTCTGGGACTATAGCATCATATGGGGAAAAAAAG
1 ACCATATAGTGTAAGACCTAGTCTGGGACTATAGCATAATATGGGGAAAAAAAG
* * * * **
8481950 ACCATATAGTGTCAGACCTAGTCTCGGACTATGGCATAATATGGGGATATGAAG
1 ACCATATAGTGTAAGACCTAGTCTGGGACTATAGCATAATATGGGGAAAAAAAG
* *
8482004 ACCACATAGTGTAAAACCTAGTCTGGGACT
1 ACCATATAGTGTAAGACCTAGTCTGGGACT
8482034 GTGGCGTCAT
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
ACCATATAGTGTAAGACCTAGTCTGGGACTATAGCATAATATGGGGAAAAAAAG
Found at i:8483973 original size:46 final size:45
Alignment explanation
Indices: 8483923--8484095 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
8483913 GTTGAGCATC
*
8483923 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGAT
* * *
8483969 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G-AT
* * * **
8484015 CTGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCC
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGAT
* * *
8484062 CGAGCTCGTTGAGTTGAGCCCAAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
8484096 GGCGGGTTAC
Statistics
Matches: 102, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 55 0.54
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGAT
Found at i:8484077 original size:93 final size:93
Alignment explanation
Indices: 8483918--8484088 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
8483908 GGATGGTTGA
* * **
8483918 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
* *
8483983 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGCCCAAGTTCGTGAGATGTAACTAG
* * * *
8484011 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
8484076 TGAGCCCAAGTTC
66 TGAGCCCAAGTTC
8484089 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGCCCAAGTTCGTGAGATGTAACTAG
Found at i:8489369 original size:40 final size:40
Alignment explanation
Indices: 8489309--8489532 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
8489299 TATTCGGATG
*
8489309 ATATCCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
8489349 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
8489392 ATACCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
8489432 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
8489472 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
8489512 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
8489533 ATACTTGGAT
Statistics
Matches: 164, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:8489452 original size:83 final size:80
Alignment explanation
Indices: 8489313--8489532 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
8489303 CGGATGATAT
* * *
8489313 CCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
8489378 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
8489396 CCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
*
8489461 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
8489476 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
8489533 ATACTTGGAT
Statistics
Matches: 125, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 63 0.50
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTA
TGCTAGTGACTATAC
Found at i:8491119 original size:25 final size:26
Alignment explanation
Indices: 8491085--8491136 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
8491075 AAGTTGAATG
*
8491085 AATAAATCGTCTGATT-GAAGCCAGA
1 AATAAATCGTCCGATTCGAAGCCAGA
*
8491110 AATAAATCGTCCGATTCGGAGCCAGA
1 AATAAATCGTCCGATTCGAAGCCAGA
8491136 A
1 A
8491137 TAACAAGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (26 bp):
AATAAATCGTCCGATTCGAAGCCAGA
Found at i:8497273 original size:27 final size:26
Alignment explanation
Indices: 8497214--8497325 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
8497204 CAGCATGGCT
* * *
8497214 ACCAGAACAAATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
8497240 ACCAGAACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATAAT-GTGGCAGAGCC
* *
8497267 ACTAGAACAGATATATGTTGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
*
8497294 ACCA-AATCAGATAATTGTGGCATAGCC
1 ACCAGAA-CAGATAA-TGTGGCAGAGCC
8497321 ACCAG
1 ACCAG
8497326 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 17 0.23
27 54 0.74
28 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:8498786 original size:24 final size:24
Alignment explanation
Indices: 8498758--8498852 Score: 163
Period size: 24 Copynumber: 4.0 Consensus size: 24
8498748 CCAACACCAT
*
8498758 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
8498782 TCTCCCTTATCAGCTCCTACATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
8498806 TCTCCCTTACCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
8498830 TCTCCCTTATCAGCTCCTAAATC
1 TCTCCCTTATCAGCTCCTAAATC
8498853 TTTTCCTGAC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:8503638 original size:40 final size:40
Alignment explanation
Indices: 8503559--8503856 Score: 449
Period size: 40 Copynumber: 7.5 Consensus size: 40
8503549 AAACCAAGTA
* * *
8503559 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
8503598 CCTTCGGAACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
8503638 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
8503678 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
8503718 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
8503758 CCTTCGGGACTTAGCCCAGATATAGTAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
8503798 CCTTTGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
8503838 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
8503857 TTATCATCCG
Statistics
Matches: 239, Mismatches: 17, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.06
40 225 0.94
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:8508562 original size:27 final size:26
Alignment explanation
Indices: 8508505--8508615 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
8508495 AGCATGGATG
* * * *
8508505 CCAGAATAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
8508531 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
*
8508558 CCAGAACAGATATATGTGGCAGATCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
8508585 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
8508612 CCAG
1 CCAG
8508616 GACTCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 14 0.19
27 58 0.78
28 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:8510080 original size:24 final size:24
Alignment explanation
Indices: 8510045--8510145 Score: 175
Period size: 24 Copynumber: 4.2 Consensus size: 24
8510035 CCAACACCAT
*
8510045 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
8510069 TCTCCCTTATCAGCTCCTACATCC
1 TCTCCCTTATCAGCTCCTAAATCC
8510093 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
8510117 TCTCCCTTATCAGCTCCTAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
8510141 TCTCC
1 TCTCC
8510146 TGACAGCCTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.20, C:0.43, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:8515832 original size:32 final size:32
Alignment explanation
Indices: 8515786--8515852 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
8515776 AATAAGTATG
**
8515786 AAATTATTGTGAGATGGCATAGGTATGTACAC
1 AAATTATTACGAGATGGCATAGGTATGTACAC
*
8515818 AAATTATTACGAGATGGTATAGGTATGTACAC
1 AAATTATTACGAGATGGCATAGGTATGTACAC
8515850 AAA
1 AAA
8515853 ACTTATGATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (32 bp):
AAATTATTACGAGATGGCATAGGTATGTACAC
Found at i:8516918 original size:21 final size:20
Alignment explanation
Indices: 8516892--8516937 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
8516882 AGGGACTAAA
* *
8516892 ATGAAAAGTTGTAAAAATTT
1 ATGAAAAATTCTAAAAATTT
8516912 GATGAAAAATTCTAAAAATTT
1 -ATGAAAAATTCTAAAAATTT
8516933 ATGAA
1 ATGAA
8516938 TATCTGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.52, C:0.02, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGAAAAATTCTAAAAATTT
Found at i:8523288 original size:21 final size:21
Alignment explanation
Indices: 8523246--8523303 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
8523236 TATGAACTTG
* *
8523246 TTCGACCATGATTCGAAAATGA
1 TTCGACGATGATTTG-AAATGA
*
8523268 TTCGACGGTGATTTGAAATGA
1 TTCGACGATGATTTGAAATGA
*
8523289 TTCGACTATGATTTG
1 TTCGACGATGATTTG
8523304 GTATTAGACC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 19 0.61
22 12 0.39
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (21 bp):
TTCGACGATGATTTGAAATGA
Found at i:8523299 original size:11 final size:11
Alignment explanation
Indices: 8523246--8523301 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
8523236 TATGAACTTG
*
8523246 TTCGACCATGA
1 TTCGACAATGA
*
8523257 TTCGAAAATGA
1 TTCGACAATGA
**
8523268 TTCGACGGTGA
1 TTCGACAATGA
*
8523279 TTTGA-AATGA
1 TTCGACAATGA
*
8523289 TTCGACTATGA
1 TTCGACAATGA
8523300 TT
1 TT
8523302 TGGTATTAGA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
10 7 0.21
11 27 0.79
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (11 bp):
TTCGACAATGA
Found at i:8526884 original size:15 final size:15
Alignment explanation
Indices: 8526860--8526889 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8526850 CTAATGTATT
8526860 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
8526875 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
8526890 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:8539435 original size:43 final size:43
Alignment explanation
Indices: 8539378--8539469 Score: 157
Period size: 43 Copynumber: 2.1 Consensus size: 43
8539368 ATAATTCTTA
*
8539378 ATATGTGCATATATGTTTAGGTAGATTCGGCCACCTAACTAAT
1 ATATGTGCATATATGTCTAGGTAGATTCGGCCACCTAACTAAT
* *
8539421 ATATGTGCATATATGTCTAGGTATATTCGGCCACCTAATTAAT
1 ATATGTGCATATATGTCTAGGTAGATTCGGCCACCTAACTAAT
8539464 ATATGT
1 ATATGT
8539470 ATATGTAGCT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.37
Consensus pattern (43 bp):
ATATGTGCATATATGTCTAGGTAGATTCGGCCACCTAACTAAT
Found at i:8542825 original size:17 final size:17
Alignment explanation
Indices: 8542803--8542840 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
8542793 GTCTCAGTTG
8542803 TGTGTGACACACGACCA
1 TGTGTGACACACGACCA
*
8542820 TGTGTGACACACGACCG
1 TGTGTGACACACGACCA
8542837 TGTG
1 TGTG
8542841 CCACCTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (17 bp):
TGTGTGACACACGACCA
Found at i:8550364 original size:46 final size:46
Alignment explanation
Indices: 8550314--8550489 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
8550304 TGGTTGAGCA
8550314 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8550360 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8550405 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8550453 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8550490 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8550470 original size:93 final size:93
Alignment explanation
Indices: 8550311--8550482 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
8550301 GGATGGTTGA
* *
8550311 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8550376 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
8550404 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8550469 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
8550483 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8555250 original size:47 final size:47
Alignment explanation
Indices: 8555198--8555507 Score: 476
Period size: 47 Copynumber: 6.6 Consensus size: 47
8555188 GATAATTGTG
* *
8555198 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
8555245 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
8555292 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
8555341 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
8555388 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
8555435 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
8555482 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
8555508 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
47 196 0.81
49 45 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:8555345 original size:143 final size:141
Alignment explanation
Indices: 8555198--8555507 Score: 476
Period size: 143 Copynumber: 2.2 Consensus size: 141
8555188 GATAATTGTG
* * *
8555198 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
8555263 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATG
* *
8555328 GCCGATGTGATGA
129 GCCAACGTGATGA
8555341 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
8555406 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
*
8555471 CAACGTGATGG
131 CAACGTGATGA
*
8555482 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
8555508 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 54 0.35
143 99 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
CAACGTGATGA
Found at i:8562617 original size:46 final size:46
Alignment explanation
Indices: 8562565--8562740 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
8562555 TGGTTGAGCA
8562565 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8562611 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8562656 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8562704 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8562741 GGGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8562721 original size:93 final size:93
Alignment explanation
Indices: 8562562--8562733 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
8562552 GGATGGTTGA
* **
8562562 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8562627 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
8562655 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8562720 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
8562734 CTTATGGGGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8565401 original size:15 final size:13
Alignment explanation
Indices: 8565369--8565401 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
8565359 GCGTGTGCGA
8565369 CCACACAACTTGC
1 CCACACAACTTGC
8565382 CCACACAACTTGC
1 CCACACAACTTGC
8565395 CCACACA
1 CCACACA
8565402 GGCATGTCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.48, G:0.06, T:0.12
Consensus pattern (13 bp):
CCACACAACTTGC
Found at i:8569493 original size:43 final size:43
Alignment explanation
Indices: 8569435--8569531 Score: 140
Period size: 43 Copynumber: 2.3 Consensus size: 43
8569425 GGATCACATA
* * *
8569435 TATCGATGCCAATAGCCCAACTATGGTCTTACACGATATCTCG
1 TATCGATGTCAATAGCCCAACTATGGTCTTAAACAATATCTCG
* * *
8569478 TATCGATGTCGATAGCCCAGCTATGGTTTTAAACAATATCTCG
1 TATCGATGTCAATAGCCCAACTATGGTCTTAAACAATATCTCG
8569521 TATCGATGTCA
1 TATCGATGTCA
8569532 TGTCTCAGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
TATCGATGTCAATAGCCCAACTATGGTCTTAAACAATATCTCG
Found at i:8569568 original size:42 final size:42
Alignment explanation
Indices: 8569542--8569728 Score: 284
Period size: 42 Copynumber: 4.5 Consensus size: 42
8569532 TGTCTCAGAC
*
8569542 ATGGTCTTACATGAAATCAAATATCGATGCCATATCCTAGAT
1 ATGGTCTTACAAGAAATCAAATATCGATGCCATATCCTAGAT
*
8569584 ATGGTCTTACAAAAAATCAAATATCGATGCCATATCCTAGAT
1 ATGGTCTTACAAGAAATCAAATATCGATGCCATATCCTAGAT
* * *
8569626 ATGCTCTTACACGAAATCAAATATCGATGCCATATCCTAGAC
1 ATGGTCTTACAAGAAATCAAATATCGATGCCATATCCTAGAT
* * *
8569668 ATGGTCTTACAAAAAATCAAATATCGATGTCATATCCCAGAT
1 ATGGTCTTACAAGAAATCAAATATCGATGCCATATCCTAGAT
* *
8569710 ATGGTTTTACACGAAATCA
1 ATGGTCTTACAAGAAATCA
8569729 TACATAACCC
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 130 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACAAGAAATCAAATATCGATGCCATATCCTAGAT
Found at i:8569634 original size:84 final size:84
Alignment explanation
Indices: 8569521--8569728 Score: 317
Period size: 84 Copynumber: 2.5 Consensus size: 84
8569511 CAATATCTCG
* * * * * * *
8569521 TATCGATGTCATGTCTCAGACATGGTCTTACATGAAATCAAATATCGATGCCATATCCTAGATAT
1 TATCGATGCCATATCCCAGATATGCTCTTACACGAAATCAAATATCGATGCCATATCCTAGACAT
8569586 GGTCTTACAAAAAATCAAA
66 GGTCTTACAAAAAATCAAA
*
8569605 TATCGATGCCATATCCTAGATATGCTCTTACACGAAATCAAATATCGATGCCATATCCTAGACAT
1 TATCGATGCCATATCCCAGATATGCTCTTACACGAAATCAAATATCGATGCCATATCCTAGACAT
8569670 GGTCTTACAAAAAATCAAA
66 GGTCTTACAAAAAATCAAA
* * *
8569689 TATCGATGTCATATCCCAGATATGGTTTTACACGAAATCA
1 TATCGATGCCATATCCCAGATATGCTCTTACACGAAATCA
8569729 TACATAACCC
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 112 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (84 bp):
TATCGATGCCATATCCCAGATATGCTCTTACACGAAATCAAATATCGATGCCATATCCTAGACAT
GGTCTTACAAAAAATCAAA
Found at i:8573704 original size:28 final size:29
Alignment explanation
Indices: 8573639--8573737 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
8573629 CATGAGATTG
* *
8573639 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
8573668 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
8573696 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
8573724 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
8573738 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:8578549 original size:19 final size:19
Alignment explanation
Indices: 8578525--8578565 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
8578515 GAACACTCGA
8578525 AATACTATTGGATACACGG
1 AATACTATTGGATACACGG
8578544 AATACTATTGGATACACGG
1 AATACTATTGGATACACGG
8578563 AAT
1 AAT
8578566 CTTGCACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (19 bp):
AATACTATTGGATACACGG
Done.