Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 280 of 332
Found at i:93632734 original size:19 final size:20
Alignment explanation
Indices: 93632695--93632739 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
93632685 ATGGTTCCTA
*
93632695 GTTTAGAGTTCATGGTATGG
1 GTTTAGAGTTCAAGGTATGG
*
93632715 GTTT-GAGTTCAAGGTTTGG
1 GTTTAGAGTTCAAGGTATGG
93632734 GCTTTA
1 G-TTTA
93632740 AGGTTCTGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.18, C:0.07, G:0.33, T:0.42
Consensus pattern (20 bp):
GTTTAGAGTTCAAGGTATGG
Found at i:93633312 original size:13 final size:13
Alignment explanation
Indices: 93633296--93633333 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
93633286 TAAGGTTGGG
93633296 GTTCAAGGTTTAA
1 GTTCAAGGTTTAA
*
93633309 GTTCAGGGTTTAA
1 GTTCAAGGTTTAA
93633322 GTTCAAGGTTTA
1 GTTCAAGGTTTA
93633334 GGATTTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.39
Consensus pattern (13 bp):
GTTCAAGGTTTAA
Found at i:93651236 original size:14 final size:15
Alignment explanation
Indices: 93651217--93651245 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
93651207 GAAAACGGCT
93651217 CATCACTCT-ATCCA
1 CATCACTCTCATCCA
93651231 CATCACTCTCATCCA
1 CATCACTCTCATCCA
93651246 GCTGGACGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.28
Consensus pattern (15 bp):
CATCACTCTCATCCA
Found at i:93653451 original size:46 final size:46
Alignment explanation
Indices: 93653401--93653571 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
93653391 TCATGTAGCT
* *
93653401 GATGCATTTCCCAGACATGTCTTACACTGGCT-TACATCAAGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCAAGATGCC
* * *
93653447 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCA-ATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATC-AAGATGCC
*
93653493 GATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCAT-AATG-TGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCAA-GAT-GCC
*
93653541 GATGCATGTCCTAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
93653572 ACACAAACAT
Statistics
Matches: 107, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
46 54 0.50
47 29 0.27
48 24 0.22
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCAAGATGCC
Found at i:93657430 original size:22 final size:23
Alignment explanation
Indices: 93657402--93657472 Score: 108
Period size: 22 Copynumber: 3.0 Consensus size: 23
93657392 CTCGTGTTAG
93657402 AAAAAAAAGAGAGAGAAGAGCA-
1 AAAAAAAAGAGAGAGAAGAGCAT
*
93657424 AAAAAAAAGAGAGAGAAGTGCAT
1 AAAAAAAAGAGAGAGAAGAGCAT
93657447 AAAAAAGAAGAAGAGAGAAGAGCAT
1 AAAAAA-AAG-AGAGAGAAGAGCAT
93657472 A
1 A
93657473 TGTACTTGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
22 21 0.48
23 6 0.14
24 3 0.07
25 14 0.32
ACGTcount: A:0.65, C:0.04, G:0.27, T:0.04
Consensus pattern (23 bp):
AAAAAAAAGAGAGAGAAGAGCAT
Found at i:93657821 original size:31 final size:30
Alignment explanation
Indices: 93657764--93657822 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
93657754 GTAAATACTC
* * * *
93657764 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAAGGACTAAAGTGCAAATATGA
93657794 AAAAGTTGAAGGACTAATAGTGCAAATAT
1 AAAAGTTGAAGGACTAA-AGTGCAAATAT
93657823 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAAGTTGAAGGACTAAAGTGCAAATATGA
Found at i:93658092 original size:9 final size:8
Alignment explanation
Indices: 93658076--93658103 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
93658066 TTTAATAAGA
93658076 TATTTTTT
1 TATTTTTT
93658084 TATTTTTT
1 TATTTTTT
93658092 TATTTTTT
1 TATTTTTT
93658100 TATT
1 TATT
93658104 CTATATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (8 bp):
TATTTTTT
Found at i:93658703 original size:26 final size:26
Alignment explanation
Indices: 93658667--93658776 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
93658657 TGATACAAAT
93658667 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93658693 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93658719 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93658745 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
93658771 TGATAA
1 TGATAA
93658777 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:93660436 original size:27 final size:27
Alignment explanation
Indices: 93660395--93660507 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
93660385 GAGGAAGCGT
*
93660395 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
93660422 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
93660449 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * * *
93660477 TTTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
93660503 TCTGG
1 TCTGG
93660508 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.05
27 55 0.75
28 14 0.19
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:93660500 original size:54 final size:54
Alignment explanation
Indices: 93660393--93660507 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
93660383 TGGAGGAAGC
*
93660393 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * * *
93660447 GTTCTGGTGGCTCTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
93660501 GTTCTGG
1 GTTCTGG
93660508 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:93662208 original size:27 final size:27
Alignment explanation
Indices: 93662173--93662282 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
93662163 AGCATGGCTG
*
93662173 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGACAGAGCCA
*
93662199 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGACAGAGCCA
* *
93662227 CCA-AAACAGAAATATGTGGA-AGAGCCA
1 CCAGATACAGATA-ATGT-GACAGAGCCA
* *
93662254 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGACAGAGCCA
93662281 CC
1 CC
93662283 TGGACGCTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
26 7 0.10
27 44 0.65
28 17 0.25
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGATACAGATAATGTGACAGAGCCA
Found at i:93663721 original size:24 final size:24
Alignment explanation
Indices: 93663694--93663764 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
93663684 CTAGATTTCC
**
93663694 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
93663718 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
93663742 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
93663765 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:93670069 original size:27 final size:26
Alignment explanation
Indices: 93670034--93670145 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
93670024 AGCATGGCTG
* *
93670034 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
93670060 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
93670088 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
93670115 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
93670142 CCAG
1 CCAG
93670146 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:93670094 original size:54 final size:54
Alignment explanation
Indices: 93670034--93670145 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
93670024 AGCATGGCTG
* *
93670034 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCATGGCAGAGCCA
* ** *
93670088 CCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
93670142 CCAG
1 CCAG
93670146 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
Found at i:93671589 original size:24 final size:24
Alignment explanation
Indices: 93671562--93671632 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
93671552 CTAGATTTCC
**
93671562 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
93671586 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
93671610 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
93671633 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:93674759 original size:31 final size:28
Alignment explanation
Indices: 93674693--93674761 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
93674683 TGTGCTAATT
*
93674693 TGGTGTGTTTGGGAGGACTATGTGATTC
1 TGGTGTGTTTGGGAGGAATATGTGATTC
** *
93674721 TATTGTGTTTGGGAGGATTATATGATTATTC
1 TGGTGTGTTTGGGAGGA--ATATG-TGATTC
93674752 TGGTGTGTTT
1 TGGTGTGTTT
93674762 TGGTTGGATA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
28 15 0.47
30 4 0.12
31 13 0.41
ACGTcount: A:0.16, C:0.04, G:0.33, T:0.46
Consensus pattern (28 bp):
TGGTGTGTTTGGGAGGAATATGTGATTC
Found at i:93674773 original size:23 final size:23
Alignment explanation
Indices: 93674747--93674792 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
93674737 ATTATATGAT
*
93674747 TATT-CTGGTGTGTTTTGGTTGGA
1 TATTACTGGTGT-ATTTGGTTGGA
93674770 TATTACTGGTGTATTTGGTTGGA
1 TATTACTGGTGTATTTGGTTGGA
93674793 ATACGTGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.13, C:0.04, G:0.33, T:0.50
Consensus pattern (23 bp):
TATTACTGGTGTATTTGGTTGGA
Found at i:93675059 original size:28 final size:28
Alignment explanation
Indices: 93674988--93675091 Score: 95
Period size: 28 Copynumber: 3.6 Consensus size: 28
93674978 ACTATGTGCT
*
93674988 ATACTGGTGTGTTTTGGATGGATTATATT
1 ATACTGGTGTGTTTTGGA-GGATTATATA
* * *
93675017 ATACTAGTG-GGTTTGGAGGATTATCTA
1 ATACTGGTGTGTTTTGGAGGATTATATA
*
93675044 ATTAC-GGTGTGTTTTGGAGGATTACATGATT
1 A-TACTGGTGTGTTTTGGAGGATT--AT-ATA
*
93675075 ATTCTGGTGTGTTTTGG
1 ATACTGGTGTGTTTTGG
93675092 TTGGATATTA
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
27 12 0.20
28 22 0.37
29 8 0.13
30 4 0.07
31 14 0.23
ACGTcount: A:0.20, C:0.06, G:0.30, T:0.44
Consensus pattern (28 bp):
ATACTGGTGTGTTTTGGAGGATTATATA
Found at i:93675105 original size:24 final size:23
Alignment explanation
Indices: 93675074--93675120 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
93675064 ATTACATGAT
*
93675074 TATTCTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTGGGTTGGA
93675097 TATTACTGGTGTGTTTGGGTTGGA
1 TATT-CTGGTGTGTTTGGGTTGGA
93675121 ATCCATGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (23 bp):
TATTCTGGTGTGTTTGGGTTGGA
Found at i:93687600 original size:8 final size:8
Alignment explanation
Indices: 93687589--93687613 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93687579 TTTAATAAGA
93687589 TATTTTAT
1 TATTTTAT
93687597 TATTTTAT
1 TATTTTAT
93687605 TATTTTAT
1 TATTTTAT
93687613 T
1 T
93687614 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:93689541 original size:22 final size:22
Alignment explanation
Indices: 93689516--93689564 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
93689506 AATAAGTACG
93689516 TTTAAGGGACAATATGTTTGAT
1 TTTAAGGGACAATATGTTTGAT
93689538 TTTAAGGGACAATATGTTTGAT
1 TTTAAGGGACAATATGTTTGAT
93689560 TTTAA
1 TTTAA
93689565 TTGGTTCCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (22 bp):
TTTAAGGGACAATATGTTTGAT
Found at i:93690204 original size:22 final size:23
Alignment explanation
Indices: 93690179--93690221 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93690169 TAACATGTTG
93690179 AATTTCAATTAATTTT-ATAACA
1 AATTTCAATTAATTTTGATAACA
**
93690201 AATTTTTATTAATTTTGATAA
1 AATTTCAATTAATTTTGATAA
93690222 TTTTTGACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (23 bp):
AATTTCAATTAATTTTGATAACA
Found at i:93692942 original size:23 final size:23
Alignment explanation
Indices: 93692875--93692942 Score: 111
Period size: 23 Copynumber: 3.0 Consensus size: 23
93692865 TTAAATTTTG
*
93692875 AATTATTTAATGATAATATTTAT
1 AATTATTTAGTGATAATATTTAT
93692898 AATTATTTAGTGATAATATTTA-
1 AATTATTTAGTGATAATATTTAT
93692920 AGATTATTTAGTGATAATATTTA
1 A-ATTATTTAGTGATAATATTTA
93692943 GAAAAAAATC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
22 1 0.02
23 42 0.98
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (23 bp):
AATTATTTAGTGATAATATTTAT
Found at i:93692943 original size:13 final size:13
Alignment explanation
Indices: 93692878--93692943 Score: 63
Period size: 13 Copynumber: 5.5 Consensus size: 13
93692868 AATTTTGAAT
*
93692878 TATTTAATGATAA
1 TATTTAGTGATAA
*
93692891 TATTTA-T-A-AT
1 TATTTAGTGATAA
93692901 TATTTAGTGATAA
1 TATTTAGTGATAA
*
93692914 TATTTA-AGAT--
1 TATTTAGTGATAA
93692924 TATTTAGTGATAA
1 TATTTAGTGATAA
93692937 TATTTAG
1 TATTTAG
93692944 AAAAAAATCT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
10 13 0.30
11 5 0.12
12 5 0.12
13 20 0.47
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:93693723 original size:20 final size:20
Alignment explanation
Indices: 93693698--93693791 Score: 72
Period size: 20 Copynumber: 4.8 Consensus size: 20
93693688 ATTTGAAAAT
93693698 TATAAAAATTA-TAGAATATC
1 TATAAAAATTATTA-AATATC
93693718 TATAAAAATTATTAAATATC
1 TATAAAAATTATTAAATATC
** * *
93693738 -AT-AATTTTTTTAAAAAAAT-
1 TATAAAAATTATT--AAATATC
*
93693757 TATAAAAATTATTTAATAT-
1 TATAAAAATTATTAAATATC
93693776 TATAAAATATTATTAA
1 TATAAAA-ATTATTAA
93693792 TATGTCATGA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
18 6 0.10
19 13 0.22
20 31 0.53
21 8 0.14
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (20 bp):
TATAAAAATTATTAAATATC
Found at i:93694902 original size:27 final size:27
Alignment explanation
Indices: 93694861--93694950 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
93694851 ATACATACAT
*
93694861 GTTGTGCCTACCTGACAAGCTCAACTA
1 GTTGTGCCTACCTGACAAGCACAACTA
* * * *
93694888 GTTGAGCCTATCTGACAGGCACGACTA
1 GTTGTGCCTACCTGACAAGCACAACTA
* * ** * *
93694915 GTTGTGCCTTCTTGGTAGGCACGACTA
1 GTTGTGCCTACCTGACAAGCACAACTA
93694942 GTTGTGCCT
1 GTTGTGCCT
93694951 TCTTGGTAGG
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.29
Consensus pattern (27 bp):
GTTGTGCCTACCTGACAAGCACAACTA
Found at i:93694951 original size:27 final size:27
Alignment explanation
Indices: 93694904--93694962 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
93694894 CCTATCTGAC
93694904 AGGCACGACTAGTTGTGCCTTCTTGGT
1 AGGCACGACTAGTTGTGCCTTCTTGGT
93694931 AGGCACGACTAGTTGTGCCTTCTTGGT
1 AGGCACGACTAGTTGTGCCTTCTTGGT
93694958 AGGCA
1 AGGCA
93694963 AAACTGGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.17, C:0.22, G:0.31, T:0.31
Consensus pattern (27 bp):
AGGCACGACTAGTTGTGCCTTCTTGGT
Found at i:93698625 original size:33 final size:33
Alignment explanation
Indices: 93698556--93698634 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
93698546 CTTGAGCCGA
* * *
93698556 GAGGAGTAGAATATGGAGGTGGATATGGGCTGG
1 GAGGAGTAGAGTACGGAGGTGGATATGCGCTGG
* *
93698589 GAGGAGTAGAGTACGGCGGTGGATACTGCTCT-G
1 GAGGAGTAGAGTACGGAGGTGGATA-TGCGCTGG
*
93698622 GAGGAGTTGAGTA
1 GAGGAGTAGAGTA
93698635 TATGGGTGGA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 35 0.90
34 4 0.10
ACGTcount: A:0.25, C:0.08, G:0.46, T:0.22
Consensus pattern (33 bp):
GAGGAGTAGAGTACGGAGGTGGATATGCGCTGG
Found at i:93700720 original size:22 final size:22
Alignment explanation
Indices: 93700686--93700749 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
93700676 TCAACATTTT
*
93700686 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
93700708 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
93700729 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
93700750 CATTAAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:93700743 original size:15 final size:16
Alignment explanation
Indices: 93700723--93700754 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
93700713 ATATATAATA
93700723 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
93700738 ATATAAAAATTACATT
1 ATATAAAAATTACATT
93700754 A
1 A
93700755 AAAATCACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:93700976 original size:102 final size:101
Alignment explanation
Indices: 93700835--93701318 Score: 421
Period size: 114 Copynumber: 4.5 Consensus size: 101
93700825 ATTATTTTTT
* *
93700835 AAAATACATTACTAAAAAAAAATCACAAATACACTAATACACACTAAATCACTAAACACTAACAA
1 AAAATATATTACT-AAAAAAAATCAC-AATACACTAAT--ACACTAAACCACTAAACACTAACAA
93700900 -TATATAACCTAATCTTAAATTACTAATAAAATAGCTATA
62 TTATATAACCTAATCTTAAATTACTAATAAAATAGCTATA
*
93700939 AAAATATATTACTAAAAAAAATCACAATACACTAATACACTAAACCACTAAACAGTAACAATTTA
1 AAAATATATTACTAAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAA-TTA
*
93701004 TATAACCTAATCTCAAATTACTAATAAAATAGCTATA
65 TATAACCTAATCTTAAATTACTAATAAAATAGCTATA
* * * *
93701041 AAAATATTTTTTTAAAATATATTACTAAAAAAATTACAATACGCTAATATACTAAACCACTAAAC
1 AAAATA------T---AT-TACTA--AAAAAAATCACAATACACTAATACACTAAACCACTAAAC
93701106 ACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTTTA
54 ACTAACAA-TTATATAACCTAATCTTAAATTACTAATAAAATAGC--------TA------TA
*
93701169 AAAATATATTACT-AAAAAAATCACAATACACTAATACACTAAACTACTAAACACTAACAATT-T
1 AAAATATATTACTAAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTAT
* ** *
93701232 AT-A--TAATC--AAATCAACT-ATAAAATTATTTTTTTTA
66 ATAACCTAATCTTAAAT-TACTAATAAAA-TA---GCTATA
*
93701267 AAAATATATTATTACTAAAAAAATCACAATACACTAATACACTAAA-CACTAA
1 AAAATATATTACTA--AAAAAAATCACAATACACTAATACACTAAACCACTAA
93701319 CAATTTGTAA
Statistics
Matches: 323, Mismatches: 21, Indels: 76
0.77 0.05 0.18
Matches are distributed among these distances:
98 14 0.04
100 28 0.09
101 30 0.09
102 55 0.17
103 12 0.04
104 13 0.04
108 11 0.03
109 5 0.02
110 5 0.02
111 2 0.01
112 5 0.02
113 3 0.01
114 81 0.25
115 43 0.13
118 3 0.01
119 2 0.01
122 3 0.01
128 8 0.02
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.30
Consensus pattern (101 bp):
AAAATATATTACTAAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTAT
ATAACCTAATCTTAAATTACTAATAAAATAGCTATA
Found at i:93701081 original size:114 final size:115
Alignment explanation
Indices: 93700937--93701237 Score: 523
Period size: 114 Copynumber: 2.6 Consensus size: 115
93700927 AAAATAGCTA
*
93700937 TAAAAATATATTACTAAAAAAAATCACAATACACTAATACACTAAACCACTAAACAGTAACAATT
1 TAAAAATATATTACT-AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATT
93701002 TATATAACCTAATCTCAAATTACTAATAAAATAGCTATAAAAATATTTTTT
65 TATATAACCTAATCTCAAATTACTAATAAAATAGCTATAAAAATATTTTTT
* * *
93701053 T-AAAATATATTACTAAAAAAATTACAATACGCTAATATACTAAACCACTAAACACTAACAATTT
1 TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTT
* *
93701117 ATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTT
66 ATATAACCTAATCTCAAATTACTAATAAAATAGCTATAAAAATATTTTTT
*
93701167 TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACTACTAAACACTAACAATTT
1 TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTT
93701232 ATATAA
66 ATATAA
93701238 TCAAATCAAC
Statistics
Matches: 174, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
114 95 0.55
115 78 0.45
116 1 0.01
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.31
Consensus pattern (115 bp):
TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTT
ATATAACCTAATCTCAAATTACTAATAAAATAGCTATAAAAATATTTTTT
Found at i:93701286 original size:115 final size:113
Alignment explanation
Indices: 93700937--93701318 Score: 472
Period size: 115 Copynumber: 3.5 Consensus size: 113
93700927 AAAATAGCTA
*
93700937 TAAAAATATATTACTAAAAAAAATCACAATACACTAATACACTAAACCACTAAACAGTAACAATT
1 TAAAAATATATTACT-AAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATT
*
93701002 TATATAACCTAATCTCAAATTACTAATAAAATAGCTATAAAAATAT-TTTT
65 TATATAACC-AA-ATCAAATTACTAATAAAATAGCTATAAAAATATATTTT
* * * *
93701052 TTAAAATATATTACTAAAAAAATTACAATACGCTAATATACTAAACCACTAAACACTAACAATTT
1 TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTT
* * *
93701117 ATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAATTATTTTTT
66 ATATAACCAAATC--AAATTACTAATAAAATAGCTATAAAAATATATTTT
*
93701167 TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACTACTAAACACTAACAATTT
1 TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTT
* *
93701232 ATATAATCAAATC--A--ACT-ATAAAAT---TAT-----T-TTTTTT
66 ATATAACCAAATCAAATTACTAATAAAATAGCTATAAAAATATATTTT
*
93701266 AAAAATATATTATTACTAAAAAAATCACAATACACTAATACACTAAA-CACTAA
1 TAAAA-ATA-TATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAA
93701319 CAATTTGTAA
Statistics
Matches: 245, Mismatches: 17, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
99 10 0.04
100 9 0.04
101 37 0.15
105 3 0.01
108 7 0.03
109 3 0.01
111 1 0.00
112 2 0.01
113 1 0.00
114 83 0.34
115 89 0.36
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.31
Consensus pattern (113 bp):
TAAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTT
ATATAACCAAATCAAATTACTAATAAAATAGCTATAAAAATATATTTT
Found at i:93707609 original size:3 final size:3
Alignment explanation
Indices: 93707603--93707638 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
93707593 TTCTTCTTCA
* *
93707603 GCT GCT GCT GCT GCT GCT GCT GCT TCT GCT TCT GCT
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT
93707639 ACTCAGCACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.33, G:0.28, T:0.39
Consensus pattern (3 bp):
GCT
Found at i:93719889 original size:23 final size:23
Alignment explanation
Indices: 93719871--93719936 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 23
93719861 AATAAAGTTC
93719871 AAAATAGAAA-AAAAATAAACATA
1 AAAATA-AAATAAAAATAAACATA
*
93719894 AAAATAAAATAAAAATAAAAATA
1 AAAATAAAATAAAAATAAACATA
*
93719917 AAAATAAAAATAAAGATAAA
1 AAAAT-AAAATAAAAATAAA
93719937 TGGACTCAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
22 3 0.08
23 23 0.59
24 13 0.33
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (23 bp):
AAAATAAAATAAAAATAAACATA
Found at i:93719900 original size:6 final size:6
Alignment explanation
Indices: 93719871--93719936 Score: 91
Period size: 6 Copynumber: 11.3 Consensus size: 6
93719861 AATAAAGTTC
* *
93719871 AAAATA GAAA-A AAAATA AACATA AAAAT- AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
93719917 AAAATA AAAATA AAGATA AA
1 AAAATA AAAATA AAAATA AA
93719937 TGGACTCAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
5 9 0.17
6 44 0.83
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:93719904 original size:17 final size:17
Alignment explanation
Indices: 93719871--93719936 Score: 89
Period size: 17 Copynumber: 3.8 Consensus size: 17
93719861 AATAAAGTTC
93719871 AAAATAGAAAA-AAAATA
1 AAAATA-AAAATAAAATA
*
93719888 AACATAAAAATAAAATA
1 AAAATAAAAATAAAATA
93719905 AAAATAAAAATAAAAATA
1 AAAATAAAAAT-AAAATA
*
93719923 AAAATAAAGATAAA
1 AAAATAAAAATAAA
93719937 TGGACTCAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
16 4 0.09
17 24 0.55
18 16 0.36
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:93721483 original size:21 final size:21
Alignment explanation
Indices: 93721459--93721503 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
93721449 GTCTAGCATG
93721459 TCAAGAATGAATAAAAAAAAT
1 TCAAGAATGAATAAAAAAAAT
* * *
93721480 TCAATAGTGAATAAACAAAAT
1 TCAAGAATGAATAAAAAAAAT
93721501 TCA
1 TCA
93721504 TGCTGCATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.22
Consensus pattern (21 bp):
TCAAGAATGAATAAAAAAAAT
Found at i:93721554 original size:16 final size:16
Alignment explanation
Indices: 93721528--93721571 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
93721518 AAAGCAGTCA
*
93721528 AACTAATTAAAGAAAT
1 AACTAAATAAAGAAAT
* *
93721544 TACTAAATAAATAAAT
1 AACTAAATAAAGAAAT
*
93721560 AAGTAAATAAAG
1 AACTAAATAAAG
93721572 GGAAATAATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.25
Consensus pattern (16 bp):
AACTAAATAAAGAAAT
Found at i:93721604 original size:24 final size:24
Alignment explanation
Indices: 93721577--93721623 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
93721567 TAAAGGGAAA
*
93721577 TAATAATAATAACAATAATACTAC
1 TAATAATAAAAACAATAATACTAC
* *
93721601 TAATAATAAAAAGATTAATACTA
1 TAATAATAAAAACAATAATACTA
93721624 ATAAAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (24 bp):
TAATAATAAAAACAATAATACTAC
Found at i:93721606 original size:21 final size:21
Alignment explanation
Indices: 93721580--93721627 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
93721570 AGGGAAATAA
* * *
93721580 TAATAATAACAATAATACTAC
1 TAATAATAAAAAGAATAATAC
*
93721601 TAATAATAAAAAGATTAATAC
1 TAATAATAAAAAGAATAATAC
93721622 TAATAA
1 TAATAA
93721628 AAATTAAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.29
Consensus pattern (21 bp):
TAATAATAAAAAGAATAATAC
Found at i:93721643 original size:24 final size:22
Alignment explanation
Indices: 93721575--93721644 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 22
93721565 AATAAAGGGA
*
93721575 AATAATAATAATAACAATAATACT
1 AATAAAAATAA-AA-AATAATACT
* *
93721599 ACTAATAATAAAAAGATTAATACT
1 AATAAAAATAAAAA-A-TAATACT
93721623 AATAAAAATTAAGAAAATAATA
1 AATAAAAA-TAA-AAAATAATA
93721645 AAGATATTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 1 0.03
23 3 0.08
24 28 0.72
25 4 0.10
26 3 0.08
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (22 bp):
AATAAAAATAAAAAATAATACT
Found at i:93725436 original size:21 final size:21
Alignment explanation
Indices: 93725412--93725454 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
93725402 AGTTAGTAAT
93725412 TAAAA-AAAACTAAAATAAAAA
1 TAAAATAAAA-TAAAATAAAAA
*
93725433 TAAAATACAATAAAATAAAAA
1 TAAAATAAAATAAAATAAAAA
93725454 T
1 T
93725455 GGCTCAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAAATAAAATAAAATAAAAA
Found at i:93725453 original size:16 final size:15
Alignment explanation
Indices: 93725412--93725454 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
93725402 AGTTAGTAAT
*
93725412 TAAAAAAAACTAAAA
1 TAAAAAAAAATAAAA
*
93725427 TAAAAATAAAATACAA
1 TAAAAA-AAAATAAAA
93725443 TAAAATAAAAAT
1 TAAAA-AAAAAT
93725455 GGCTCAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.25
16 17 0.71
17 1 0.04
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAAAAAAATAAAA
Found at i:93726583 original size:29 final size:30
Alignment explanation
Indices: 93726541--93726597 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
93726531 CATGGGCTTC
*
93726541 CACATGGGCGTGTGC-TAGCCTGTGTGGGT
1 CACATGGGCATGTGCTTAGCCTGTGTGGGT
*
93726570 CACATGGGTATGTGCTTAGCCTGTGTGG
1 CACATGGGCATGTGCTTAGCCTGTGTGG
93726598 AATTCGTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.12, C:0.19, G:0.39, T:0.30
Consensus pattern (30 bp):
CACATGGGCATGTGCTTAGCCTGTGTGGGT
Found at i:93730319 original size:16 final size:16
Alignment explanation
Indices: 93730300--93730333 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
93730290 AACGACAAAG
93730300 GCTGAAAA-GTCGAAAA
1 GCTGAAAAGGT-GAAAA
93730316 GCTGAAAAGGTGAAAA
1 GCTGAAAAGGTGAAAA
93730332 GC
1 GC
93730334 CAAAATGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.47, C:0.12, G:0.29, T:0.12
Consensus pattern (16 bp):
GCTGAAAAGGTGAAAA
Found at i:93736466 original size:43 final size:43
Alignment explanation
Indices: 93736417--93736569 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 43
93736407 CCATATATGT
* * * *
93736417 TCTTACATGTTATCACATATCGATGCCATTGTCCTAGACATGG
1 TCTTACACGTAATCACATATCGATGCCAATGTCCCAGACATGG
* * *
93736460 TCTTACACGAAAT-AGATTAACGATGCCAATGTCCCAGACATGG
1 TCTTACACGTAATCACA-TATCGATGCCAATGTCCCAGACATGG
* *
93736503 TCTTACACATAATCACA-ATACAATGCCAATGTCCCAGACATGG
1 TCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGACATGG
* *
93736546 TCTTACATGTAATCACATCTCGAT
1 TCTTACACGTAATCACATATCGAT
93736570 AACCTAATGT
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 3 0.03
43 84 0.93
44 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (43 bp):
TCTTACACGTAATCACATATCGATGCCAATGTCCCAGACATGG
Found at i:93736660 original size:22 final size:22
Alignment explanation
Indices: 93736632--93736681 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
93736622 ACTTTCGGAT
*
93736632 GTCGTAACTTTGTTGATTCTTA
1 GTCGTAACTTTGTCGATTCTTA
93736654 GTCGTAACTTTGTCGATTCTTA
1 GTCGTAACTTTGTCGATTCTTA
*
93736676 CTCGTA
1 GTCGTA
93736682 TATGCTCGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.46
Consensus pattern (22 bp):
GTCGTAACTTTGTCGATTCTTA
Found at i:93738452 original size:26 final size:26
Alignment explanation
Indices: 93738423--93738530 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
93738413 TGGTACAAAT
93738423 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
93738449 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93738475 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93738501 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93738527 TGAT
1 TGAT
93738531 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93743580 original size:26 final size:26
Alignment explanation
Indices: 93743551--93743658 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
93743541 TGGTACAAAT
93743551 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
93743577 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93743603 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93743629 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93743655 TGAT
1 TGAT
93743659 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93745294 original size:27 final size:27
Alignment explanation
Indices: 93745254--93745412 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
93745244 AGGAAGCGTC
*
93745254 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
93745281 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
93745307 CCTGGTGGGTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
93745335 CTGGTGGCTCTGCCAC-ATATATTTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
93745362 CTGGTGGATCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
93745389 CTGGTGACTCCGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
93745413 GCAGCCTCGC
Statistics
Matches: 111, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:93745333 original size:54 final size:54
Alignment explanation
Indices: 93745251--93745412 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
93745241 TGGAGGAAGC
*
93745251 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGATATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
93745305 GTCCTGGTGGGTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGATATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * *
93745359 GTTCTGGTGGATCTGCCACAA-TATCTGTATCTGGTGACTCCGTCACA-ATATCT
1 GTCCTGGTGGATATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
93745412 G
1 G
93745413 GCAGCCTCGC
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 12 0.12
54 86 0.88
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGATATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:93745406 original size:81 final size:80
Alignment explanation
Indices: 93745254--93745412 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 80
93745244 AGGAAGCGTC
* ** *
93745254 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGGTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGATCTGCCACATATATCTGTCCTGGTGACTAC
93745319 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
93745335 CTGGTGGCTCTGCCAC-ATATATTTGTTCTGGTGGATCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGATCTGCCACATATATCTGT-CCTGGTGACT
* *
93745398 CCGTCACAATATCTG
64 ACGCCACAATATCTG
93745413 GCAGCCTCGC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
80 16 0.24
81 50 0.76
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGATCTGCCACATATATCTGTCCTGGTGACTAC
GCCACAATATCTGAT
Found at i:93749414 original size:19 final size:19
Alignment explanation
Indices: 93749390--93749431 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
93749380 TTATGTTTAA
*
93749390 TTTATTATTAGTTTACCTT
1 TTTATTATTAATTTACCTT
93749409 TTTATTATTAATTTACCTT
1 TTTATTATTAATTTACCTT
93749428 TTTA
1 TTTA
93749432 CCCTTTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTATTATTAATTTACCTT
Found at i:93754372 original size:37 final size:37
Alignment explanation
Indices: 93754313--93754384 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
93754303 TTTAGCTTGA
* *
93754313 ATAATCCCCACACGTAGTCATCGGGTCTTACCCGGGC
1 ATAATCCCCACACATAGCCATCGGGTCTTACCCGGGC
*
93754350 ATAATCTCCACACATAGCCATCGGGTCTTACCCGG
1 ATAATCCCCACACATAGCCATCGGGTCTTACCCGG
93754385 AATATATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.22
Consensus pattern (37 bp):
ATAATCCCCACACATAGCCATCGGGTCTTACCCGGGC
Found at i:93754556 original size:46 final size:47
Alignment explanation
Indices: 93754491--93754606 Score: 144
Period size: 48 Copynumber: 2.4 Consensus size: 47
93754481 TATACACACC
* *
93754491 TTTCACATTTGGTCATTCGGC-CACAATATATACACATCTCATACATA
1 TTTCACA-TTAGTCATTCGGCTCACAACATATACACATCTCATACATA
* * *
93754538 TTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCATACATA
1 TTTCACATTAGTCATTCGGC-TCACAACATATACACATCTCATACATA
* *
93754586 TTTCACACTAGCCATTCGGCT
1 TTTCACATTAGTCATTCGGCT
93754607 TTACCACACA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
46 12 0.20
47 8 0.13
48 40 0.67
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (47 bp):
TTTCACATTAGTCATTCGGCTCACAACATATACACATCTCATACATA
Found at i:93754578 original size:48 final size:48
Alignment explanation
Indices: 93754518--93754623 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
93754508 CGGCCACAAT
* * *
93754518 ATATACACATCTCATACATATTTCACATTAGTCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
93754566 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
93754614 ACATATATAT
1 ATATACATAT
93754624 ATTTATCTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:93764374 original size:121 final size:124
Alignment explanation
Indices: 93764137--93764470 Score: 441
Period size: 133 Copynumber: 2.7 Consensus size: 124
93764127 AGACTTCGAT
93764137 GTTAGAATTTACTTTTAGTATTTTTTATTTTTGTATAATGTTATTATCC-AA-AAAAAGCTAATG
1 GTTAGAATTTACTTTTAGTATTTTTTATTTTTGTATAATGTTATTATCCAAAGAAAAAGCTAATG
* *
93764200 TTTGCTACAGCTCTAACCAATTGTATATTTAGTTGCTTCCAAGCGAGACTCC-A-A-C-
66 TTTGCTACGGCTCTAACCAATTGTATATTTAGTTGCTTCAAAGCGAGACTCCGAGACCA
93764255 GTTAGAATTTACTTTTAGTATTTTTTATTTCTTGTATAATGTTATTATCCAAAGAAAAAGCTAAT
1 GTTAGAATTTACTTTTAGTATTTTTTATTT-TTGTATAATGTTATTATCCAAAGAAAAAGCTAAT
* **
93764320 GTTTGCTACGGCTCTAACCAATTGTATATTTAGTTGCTTATAAAG-TTG-CTTCCAAGGGAGACT
65 GTTTGCTACGGCTCTAACCAATTGTATATTTAGTTGCTT-CAAAGCGAGAC-TCC----GAGA--
93764383 CCGA
122 CC-A
* *
93764387 TGTTAGAATTTACTTTTAGTATTTTTTTTTTTTTGTATAATGTTATTATCCAAAGAAAAAGTTAA
1 -GTTAGAATTTACTTTTAGTA-TTTTTTATTTTTGTATAATGTTATTATCCAAAGAAAAAGCTAA
93764452 TGTTTGCTACGGCTCTAAC
64 TGTTTGCTACGGCTCTAAC
93764471 AAACGGCAAC
Statistics
Matches: 191, Mismatches: 7, Indels: 21
0.87 0.03 0.10
Matches are distributed among these distances:
118 30 0.16
119 19 0.10
120 3 0.02
121 53 0.28
122 3 0.02
126 1 0.01
127 1 0.01
130 1 0.01
133 71 0.37
134 9 0.05
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (124 bp):
GTTAGAATTTACTTTTAGTATTTTTTATTTTTGTATAATGTTATTATCCAAAGAAAAAGCTAATG
TTTGCTACGGCTCTAACCAATTGTATATTTAGTTGCTTCAAAGCGAGACTCCGAGACCA
Found at i:93777425 original size:26 final size:26
Alignment explanation
Indices: 93777375--93777426 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
93777365 AGTGATTTGG
* **
93777375 TTTATATTCTAATGTTAATTTCTTAT
1 TTTATATTCCAATGTTAATCCCTTAT
93777401 TTTATATTCCAATGTTAATCCCTTAT
1 TTTATATTCCAATGTTAATCCCTTAT
93777427 GTCCCATGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (26 bp):
TTTATATTCCAATGTTAATCCCTTAT
Found at i:93782368 original size:39 final size:39
Alignment explanation
Indices: 93782322--93782445 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
93782312 GCTCTGATGA
*
93782322 GCTTCAGTTATCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
*
93782361 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
* *
93782400 GCTTCAGTTAGCCTTCGGGCTGCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
93782439 GCTTCAG
1 GCTTCAG
93782446 CTAGATTTCG
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.12, C:0.27, G:0.23, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
Found at i:93782456 original size:39 final size:39
Alignment explanation
Indices: 93782322--93782461 Score: 208
Period size: 39 Copynumber: 3.6 Consensus size: 39
93782312 GCTCTGATGA
* *
93782322 GCTTCAGTTATCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* *
93782361 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
93782400 GCTTCAGTTAGCCTTCGGGCTGCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
* **
93782439 GCTTCAGCTAGATTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
93782462 AGATCACGAT
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:93797312 original size:52 final size:52
Alignment explanation
Indices: 93797250--93797355 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
93797240 AGAGTGAAGT
*
93797250 TAACATTATATACATATTTAAATAAATTGTTTTTTATACACTTGCATCAAAC
1 TAACATTATATACATATTTAAATAAATTATTTTTTATACACTTGCATCAAAC
* *
93797302 TAACATTATATACATATTTAAATCAATTATTTTTTATATACTTGCATCAAAC
1 TAACATTATATACATATTTAAATAAATTATTTTTTATACACTTGCATCAAAC
93797354 TA
1 TA
93797356 CACCTGAGTC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.43
Consensus pattern (52 bp):
TAACATTATATACATATTTAAATAAATTATTTTTTATACACTTGCATCAAAC
Found at i:93798962 original size:29 final size:29
Alignment explanation
Indices: 93798924--93799003 Score: 160
Period size: 29 Copynumber: 2.8 Consensus size: 29
93798914 ACAAAATAAT
93798924 AACATAAGTGACTAAAACGTAATATTTTA
1 AACATAAGTGACTAAAACGTAATATTTTA
93798953 AACATAAGTGACTAAAACGTAATATTTTA
1 AACATAAGTGACTAAAACGTAATATTTTA
93798982 AACATAAGTGACTAAAACGTAA
1 AACATAAGTGACTAAAACGTAA
93799004 CATGAGGTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAATATTTTA
Found at i:93798970 original size:15 final size:15
Alignment explanation
Indices: 93798924--93798999 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
93798914 ACAAAATAAT
93798924 AACATAAGTGACTAA
1 AACATAAGTGACTAA
* * *
93798939 AACGTAA-T-ATTTTA
1 AACATAAGTGA-CTAA
93798953 AACATAAGTGACTAA
1 AACATAAGTGACTAA
* * *
93798968 AACGTAA-T-ATTTTA
1 AACATAAGTGA-CTAA
93798982 AACATAAGTGACTAA
1 AACATAAGTGACTAA
93798997 AAC
1 AAC
93799000 GTAACATGAG
Statistics
Matches: 43, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
13 2 0.05
14 18 0.42
15 21 0.49
16 2 0.05
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.28
Consensus pattern (15 bp):
AACATAAGTGACTAA
Found at i:93800029 original size:19 final size:19
Alignment explanation
Indices: 93799983--93800030 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
93799973 GTATATATTT
93799983 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
93800001 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
93800020 TAAGTTTTATT
1 TAAATTTTATT
93800031 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:93800092 original size:43 final size:43
Alignment explanation
Indices: 93800044--93800136 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
93800034 ATTCTAGAAA
* * *
93800044 TATTTT-TATTTTATTTTTTAGTAGTTTACTAGAATAAGGGAAT
1 TATTTTCT-TTTTATGTTTTAGTAGTTTACTAGAATAAAGGAAC
*
93800087 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAAGGAAC
1 TATTTTCTTTTTATGTTTTAGTAGTTTACTAGAATAAAGGAAC
93800130 TATTTTC
1 TATTTTC
93800137 CCAATTAGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 44 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.04, G:0.13, T:0.54
Consensus pattern (43 bp):
TATTTTCTTTTTATGTTTTAGTAGTTTACTAGAATAAAGGAAC
Found at i:93804772 original size:19 final size:19
Alignment explanation
Indices: 93804726--93804773 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
93804716 GTATATATTT
93804726 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
93804744 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
93804763 TAAATTTTATT
1 TAAATTTTATT
93804774 CATATTCTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:93804835 original size:43 final size:42
Alignment explanation
Indices: 93804787--93804878 Score: 132
Period size: 43 Copynumber: 2.2 Consensus size: 42
93804777 ATTCTAGAAA
*
93804787 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAAGGAAT
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAAT-AAGGAAC
* *
93804830 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGAAC
93804872 TATTTTC
1 TATTTTC
93804879 CCAATTAGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
42 13 0.29
43 31 0.69
44 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.12, T:0.53
Consensus pattern (42 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGAAC
Found at i:93811073 original size:17 final size:16
Alignment explanation
Indices: 93811038--93811101 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
93811028 AGGGCTTGCA
*
93811038 GGTGAGCTCTCAAGTTT
1 GGTGAGCTCGC-AGTTT
93811055 GGTGAGCTCGCAGTCTT
1 GGTGAGCTCGCAGT-TT
* * *
93811072 GGTAAGCTCACATTTTTT
1 GGTGAGCTCGCA--GTTT
93811090 GGTGAGCTCGCA
1 GGTGAGCTCGCA
93811102 ATCCGCAGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
16 3 0.08
17 22 0.58
18 12 0.32
19 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.30, T:0.33
Consensus pattern (16 bp):
GGTGAGCTCGCAGTTT
Found at i:93818465 original size:19 final size:18
Alignment explanation
Indices: 93818441--93818484 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
93818431 AATATTAATA
93818441 AAATTTATCTAAC-TAAAT
1 AAATTTATCT-ACTTAAAT
*
93818459 AAGATTTGTCTACTTAAAT
1 AA-ATTTATCTACTTAAAT
93818478 AAATTTA
1 AAATTTA
93818485 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (18 bp):
AAATTTATCTACTTAAAT
Found at i:93818492 original size:2 final size:2
Alignment explanation
Indices: 93818485--93818510 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
93818475 AATAAATTTA
93818485 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
93818511 TTAAACAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93848023 original size:31 final size:31
Alignment explanation
Indices: 93847988--93848136 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
93847978 CTTGTCACTT
*
93847988 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
93848019 GTAGCTGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** * *
93848050 GTAGCTGAAGCTATTAATTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
93848081 GTAGCCGAAGCTACCACTTTTCAGTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
93848112 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
93848137 TGTCATTTGC
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 104 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:93848223 original size:50 final size:50
Alignment explanation
Indices: 93848112--93848287 Score: 262
Period size: 50 Copynumber: 3.5 Consensus size: 50
93848102 CAGTAATCAG
* * * *
93848112 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGCCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
93848163 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* * *
93848213 GTAGCTGAAGCTATTACTTATCACTTTCACTTATCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
93848263 GCAGCCAAAGCTATCACTTATCACT
1 GTAGCCGAAGCTATCACTTATCACT
93848288 GGTTGCCATG
Statistics
Matches: 114, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 90 0.79
51 24 0.21
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:93854196 original size:16 final size:16
Alignment explanation
Indices: 93854175--93854229 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
93854165 GTTTGGTTCA
*
93854175 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
**
93854191 CTGTAATTAAATAGAG
1 CTGTAATGGAATAGAG
93854207 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
93854223 TTGTAAT
1 CTGTAAT
93854230 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:93854302 original size:44 final size:46
Alignment explanation
Indices: 93854211--93854304 Score: 131
Period size: 44 Copynumber: 2.1 Consensus size: 46
93854201 ATAGAGCTGT
**
93854211 AATGGAATAGAGTTGTAATCAGTAATTCAGCTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATCAGTAATTCAGCTGTTTGGTTGAATGG
*
93854257 AATGGAATAGAACTGTAAT-AGT-ATTCTTG-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATCAGTAATTC-AGCTGTTTGGTTGAATGG
93854301 AATG
1 AATG
93854305 ATATTGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 23 0.52
45 4 0.09
46 17 0.39
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATCAGTAATTCAGCTGTTTGGTTGAATGG
Found at i:93854471 original size:59 final size:61
Alignment explanation
Indices: 93854407--93854575 Score: 202
Period size: 63 Copynumber: 2.8 Consensus size: 61
93854397 TTATAATAGG
*
93854407 ATTATTATTAAATATAATTTAAT-AATA-AATAATAAATAATTTAAT-CATACTTTAATATA
1 ATTATTATTAAATATAATTTAATAAAGATAATAATAAATAATTTAATACATAC-TTAATATA
* *
93854466 ATTATTATTAAATATAATTTAATAAAGATAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAGATAATAATAAATAATTTAAT-ACATACTTAATATA
* * * *
93854528 ATTATTATTAAAATATGAA-TGAATAAAAATCATAATATATAATATTAA
1 ATTATTATT-AAATAT-AATTTAATAAAGATAATAATAAATAAT-TTAA
93854576 AAAATAGTAT
Statistics
Matches: 97, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
59 23 0.24
60 3 0.03
61 17 0.18
62 17 0.18
63 31 0.32
64 6 0.06
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (61 bp):
ATTATTATTAAATATAATTTAATAAAGATAATAATAAATAATTTAATACATACTTAATATA
Found at i:93858890 original size:17 final size:17
Alignment explanation
Indices: 93858877--93858910 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93858867 TCTAAATCGA
*
93858877 GGAAAGGCGAAAATCAC
1 GGAAAGGCAAAAATCAC
93858894 GGAAAGGCAAAAATCAC
1 GGAAAGGCAAAAATCAC
93858911 AAATTAGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.18, G:0.26, T:0.06
Consensus pattern (17 bp):
GGAAAGGCAAAAATCAC
Found at i:93860900 original size:30 final size:30
Alignment explanation
Indices: 93860860--93860945 Score: 118
Period size: 30 Copynumber: 2.9 Consensus size: 30
93860850 TAGGCACTTC
93860860 CACACGGGTAATCCACATGCCCGTGTTAGA
1 CACACGGGTAATCCACATGCCCGTGTTAGA
* * *
93860890 CACATGGGTAATCTACACGCCCGTGTTAGA
1 CACACGGGTAATCCACATGCCCGTGTTAGA
* **
93860920 CATACGGGTAGGCCACATGCCCGTGT
1 CACACGGGTAATCCACATGCCCGTGT
93860946 GTCATGGCCG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (30 bp):
CACACGGGTAATCCACATGCCCGTGTTAGA
Found at i:93864954 original size:30 final size:30
Alignment explanation
Indices: 93864920--93864980 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
93864910 TCCTTAATTC
93864920 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
93864950 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
93864980 A
1 A
93864981 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:93871780 original size:36 final size:36
Alignment explanation
Indices: 93871740--93871810 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
93871730 GTACTGCTAT
*
93871740 GGTTGCACGAGTCACACAATACGACTGTGGACCTAA
1 GGTTGCACGAGTCACACAAGACGACTGTGGACCTAA
* * *
93871776 GGTTGCACGGGTCGCACAAGATGACTGTGGACCTA
1 GGTTGCACGAGTCACACAAGACGACTGTGGACCTA
93871811 CTGATGGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.20
Consensus pattern (36 bp):
GGTTGCACGAGTCACACAAGACGACTGTGGACCTAA
Found at i:93871965 original size:40 final size:40
Alignment explanation
Indices: 93871881--93871994 Score: 131
Period size: 40 Copynumber: 2.9 Consensus size: 40
93871871 TACGATATTT
*
93871881 ATGGCTTTGTGCCACTATTCATGGCTTTGTGCCACTATTC
1 ATGGCTTTGTGCCACTATTCATGGCTTTGTGCCACTACTC
* * * *
93871921 ATGGCTTTGTGCCACTATTGATGGCTTTGTGTCGCTACTG
1 ATGGCTTTGTGCCACTATTCATGGCTTTGTGCCACTACTC
* * **
93871961 ATGGCTTCGAGCTGCTAGTT-ATGGCTTTGTGCCA
1 ATGGCTTTGTGCCACTA-TTCATGGCTTTGTGCCA
93871995 TATACTGATA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
40 60 0.97
41 2 0.03
ACGTcount: A:0.14, C:0.22, G:0.25, T:0.39
Consensus pattern (40 bp):
ATGGCTTTGTGCCACTATTCATGGCTTTGTGCCACTACTC
Found at i:93871967 original size:20 final size:20
Alignment explanation
Indices: 93871876--93871951 Score: 134
Period size: 20 Copynumber: 3.8 Consensus size: 20
93871866 ATTGCTACGA
*
93871876 TATTTATGGCTTTGTGCCAC
1 TATTCATGGCTTTGTGCCAC
93871896 TATTCATGGCTTTGTGCCAC
1 TATTCATGGCTTTGTGCCAC
93871916 TATTCATGGCTTTGTGCCAC
1 TATTCATGGCTTTGTGCCAC
*
93871936 TATTGATGGCTTTGTG
1 TATTCATGGCTTTGTG
93871952 TCGCTACTGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.14, C:0.20, G:0.22, T:0.43
Consensus pattern (20 bp):
TATTCATGGCTTTGTGCCAC
Found at i:93872025 original size:25 final size:26
Alignment explanation
Indices: 93871997--93872046 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
93871987 TTGTGCCATA
93871997 TACTGATACTGGCAGC-TTGCTGTGT
1 TACTGATACTGGCAGCTTTGCTGTGT
*
93872022 TACTGTTACTGGCAGCTTTGCTGTG
1 TACTGATACTGGCAGCTTTGCTGTG
93872047 ATATTAGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.14, C:0.20, G:0.28, T:0.38
Consensus pattern (26 bp):
TACTGATACTGGCAGCTTTGCTGTGT
Found at i:93875410 original size:36 final size:36
Alignment explanation
Indices: 93875370--93875440 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
93875360 GTACTGCTAT
*
93875370 GGTTGCACGAGTCACACAATACGACTGTGGACCTAA
1 GGTTGCACGAGTCACACAAGACGACTGTGGACCTAA
* *
93875406 GGTTGCACGGGTCGCACAAGACGACTGTGGACCTA
1 GGTTGCACGAGTCACACAAGACGACTGTGGACCTA
93875441 CTGATGGCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (36 bp):
GGTTGCACGAGTCACACAAGACGACTGTGGACCTAA
Found at i:93875534 original size:20 final size:20
Alignment explanation
Indices: 93875506--93875584 Score: 77
Period size: 20 Copynumber: 4.0 Consensus size: 20
93875496 ATTGCTACGA
*
93875506 TATTTATGGCTTTGTGCCAC
1 TATTCATGGCTTTGTGCCAC
**
93875526 TATTCATGGCTTTGTGCCGG
1 TATTCATGGCTTTGTGCCAC
* * * * *
93875546 TATTGATGGCTTCGAGTCGC
1 TATTCATGGCTTTGTGCCAC
*
93875566 TACTCATGGCTTTGTGCCA
1 TATTCATGGCTTTGTGCCA
93875585 TATACTAATA
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.14, C:0.22, G:0.25, T:0.39
Consensus pattern (20 bp):
TATTCATGGCTTTGTGCCAC
Found at i:93878880 original size:23 final size:23
Alignment explanation
Indices: 93878808--93878902 Score: 122
Period size: 23 Copynumber: 4.1 Consensus size: 23
93878798 AAATAGTAAA
* *
93878808 CTCTATTGAGCTGAAAACGATAAG
1 CTCTATCGAGCTG-AATCGATAAG
*
93878832 CTCTATTGAGCTGAA-C-AGTAAG
1 CTCTATCGAGCTGAATCGA-TAAG
93878854 CTCTATCGAGCTGAATCGATAAG
1 CTCTATCGAGCTGAATCGATAAG
*
93878877 CTCTAACGAGCTGAATCGATAAG
1 CTCTATCGAGCTGAATCGATAAG
93878900 CTC
1 CTC
93878903 CAATGAGTTG
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
21 1 0.02
22 19 0.29
23 32 0.48
24 14 0.21
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (23 bp):
CTCTATCGAGCTGAATCGATAAG
Found at i:93878889 original size:69 final size:69
Alignment explanation
Indices: 93878815--93878958 Score: 179
Period size: 69 Copynumber: 2.1 Consensus size: 69
93878805 AAACTCTATT
* *
93878815 GAGCTGAAAACGATAAGCTCTATTGAGCTG-AACAGTAAGCTC-TATCGAGCTGAATC-GATAAG
1 GAGCTG-AAACGATAAGCTCCAATGAGCTGAAACAGTAAGCTCTTA-CGAGCTGAATCAG-TAAG
93878877 CTC-TAAC
63 CTCAT-AC
* * *
93878884 GAGCTGAATCGATAAGCTCCAATGAGTTGAAACAGTAAGCTCTTACGAGCTTAATCAGTAAGCTC
1 GAGCTGAAACGATAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAGCTGAATCAGTAAGCTC
93878949 ATAC
66 ATAC
93878953 GAGCTG
1 GAGCTG
93878959 TGGTGAGTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
68 19 0.29
69 43 0.65
70 4 0.06
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (69 bp):
GAGCTGAAACGATAAGCTCCAATGAGCTGAAACAGTAAGCTCTTACGAGCTGAATCAGTAAGCTC
ATAC
Found at i:93878900 original size:46 final size:46
Alignment explanation
Indices: 93878802--93878958 Score: 153
Period size: 46 Copynumber: 3.4 Consensus size: 46
93878792 GATGATAAAT
* * **
93878802 AGTAAACTCTATTGAGCTGAAAACGATAAGCTCTATTGAGCTGAA-C
1 AGTAAGCTCTATCGAGCTG-AAACGATAAGCTCTAACGAGCTGAATC
*
93878848 AGTAAGCTCTATCGAGCTGAATCGATAAGCTCTAACGAGCTGAATC
1 AGTAAGCTCTATCGAGCTGAAACGATAAGCTCTAACGAGCTGAATC
* * * *
93878894 -GATAAGCTCCAAT-GAGTTGAAAC-AGTAAGCTCTTACGAGCTTAATC
1 AG-TAAGCT-CTATCGAGCTGAAACGA-TAAGCTCTAACGAGCTGAATC
93878940 AGTAAGCTC-ATACGAGCTG
1 AGTAAGCTCTAT-CGAGCTG
93878959 TGGTGAGTCC
Statistics
Matches: 93, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
44 2 0.02
45 25 0.27
46 62 0.67
47 4 0.04
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (46 bp):
AGTAAGCTCTATCGAGCTGAAACGATAAGCTCTAACGAGCTGAATC
Found at i:93878914 original size:23 final size:23
Alignment explanation
Indices: 93878815--93878958 Score: 91
Period size: 23 Copynumber: 6.3 Consensus size: 23
93878805 AAACTCTATT
* * **
93878815 GAGCTGAAAACGATAAGCTCTATT
1 GAGCTG-AATCGATAAGCTCCAAC
* *
93878839 GAGCTGAA-C-AGTAAGCTCTATC
1 GAGCTGAATCGA-TAAGCTCCAAC
*
93878861 GAGCTGAATCGATAAGCTCTAAC
1 GAGCTGAATCGATAAGCTCCAAC
*
93878884 GAGCTGAATCGATAAGCTCCAAT
1 GAGCTGAATCGATAAGCTCCAAC
* * **
93878907 GAGTTGAAAC-AGTAAGCTCTTAC
1 GAGCTGAATCGA-TAAGCTCCAAC
*
93878930 GAGCTTAATC-AGTAAGCT-CATAC
1 GAGCTGAATCGA-TAAGCTCCA-AC
93878953 GAGCTG
1 GAGCTG
93878959 TGGTGAGTCC
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
21 1 0.01
22 20 0.20
23 72 0.72
24 7 0.07
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (23 bp):
GAGCTGAATCGATAAGCTCCAAC
Found at i:93880126 original size:29 final size:26
Alignment explanation
Indices: 93880064--93880121 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
93880054 ACAGTAAAAT
*
93880064 TTCTTTACGAAAATTTCACATAATAA
1 TTCTATACGAAAATTTCACATAATAA
*
93880090 TTCTATACGAAACTTTCACATAATAA
1 TTCTATACGAAAATTTCACATAATAA
93880116 TTCTAT
1 TTCTAT
93880122 CATACTGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (26 bp):
TTCTATACGAAAATTTCACATAATAA
Found at i:93881998 original size:14 final size:16
Alignment explanation
Indices: 93881964--93882000 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93881954 TTTCATCATA
*
93881964 ACATTGATCCAATTAT
1 ACATTAATCCAATTAT
93881980 ACATTAATCC-ATT-T
1 ACATTAATCCAATTAT
93881994 ACATTAA
1 ACATTAA
93882001 AAATAACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 8 0.40
15 3 0.15
16 9 0.45
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.38
Consensus pattern (16 bp):
ACATTAATCCAATTAT
Found at i:93883775 original size:22 final size:21
Alignment explanation
Indices: 93883732--93883775 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
93883722 CATTCCAAGC
* *
93883732 AATAAGGAAAATAACCCTTGA
1 AATAAGGAAAATAACACGTGA
*
93883753 AATAAGGGAAATGAACACGTGA
1 AATAAGGAAAAT-AACACGTGA
93883775 A
1 A
93883776 TGCCATTGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.52, C:0.11, G:0.20, T:0.16
Consensus pattern (21 bp):
AATAAGGAAAATAACACGTGA
Found at i:93889078 original size:15 final size:15
Alignment explanation
Indices: 93889058--93889088 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93889048 CCAACCTTCA
93889058 AATTTTACCTCAATT
1 AATTTTACCTCAATT
93889073 AATTTTACCTCAATT
1 AATTTTACCTCAATT
93889088 A
1 A
93889089 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:93891347 original size:11 final size:11
Alignment explanation
Indices: 93891331--93891357 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
93891321 TAGAAATTAG
93891331 TTTGTGAAACT
1 TTTGTGAAACT
93891342 TTTGTGAAACT
1 TTTGTGAAACT
93891353 TTTGT
1 TTTGT
93891358 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:93892889 original size:93 final size:92
Alignment explanation
Indices: 93892757--93892951 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
93892747 TTGATTTTAG
* *
93892757 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
93892821 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
93892849 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
93892914 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
93892942 CAAATTCATA
1 TAAATTCATA
93892952 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:93893009 original size:17 final size:17
Alignment explanation
Indices: 93892984--93893017 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93892974 ATAATTTTAA
*
93892984 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
93893001 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
93893018 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:93893019 original size:15 final size:16
Alignment explanation
Indices: 93892984--93893022 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
93892974 ATAATTTTAA
*
93892984 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
93893001 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
93893016 ATTTAAT
1 ATTTAAT
93893023 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:93893026 original size:17 final size:18
Alignment explanation
Indices: 93892988--93893027 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
93892978 TTTTAAATTT
*
93892988 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
93893006 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
93893022 TATTAA
1 TATTAA
93893028 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:93893142 original size:15 final size:15
Alignment explanation
Indices: 93893107--93893158 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
93893097 TTAAGAATTT
*
93893107 TATTAAATTAT-ATA
1 TATTTAATTATAATA
93893121 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
93893135 TATTTAATAATAAT-
1 TATTTAATTATAATA
93893149 TATGTTAATT
1 TAT-TTAATT
93893159 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:93893149 original size:120 final size:119
Alignment explanation
Indices: 93892975--93893273 Score: 457
Period size: 119 Copynumber: 2.5 Consensus size: 119
93892965 TTAGTTATAA
* *
93892975 TAATTTT-A-AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATATTAATTAT-TTG
1 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTT-
* * *
93893035 AAATTT-TCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTT
64 -AATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATAT
*
93893091 TATTTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTA
1 TAATT-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTA
*
93893156 ATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
65 ATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATAT
93893211 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
93893274 TAAATATGAT
Statistics
Matches: 168, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
116 4 0.02
117 2 0.01
118 1 0.01
119 81 0.48
120 75 0.45
121 5 0.03
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (119 bp):
TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAA
TTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATAT
Found at i:93893256 original size:16 final size:16
Alignment explanation
Indices: 93893235--93893276 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
93893225 TTATTAAATT
*
93893235 ATATATTTTAATTATA
1 ATATATTTTAATAATA
93893251 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
93893266 AT-TATGTTTAA
1 ATATAT-TTTAA
93893277 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:93893261 original size:15 final size:15
Alignment explanation
Indices: 93893226--93893267 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
93893216 TTAAGAATTT
*
93893226 TATTAAATTAT-ATA
1 TATTTAATTATAATA
93893240 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
93893254 TATTTAATAATAAT
1 TATTTAATTATAAT
93893268 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:93893387 original size:154 final size:155
Alignment explanation
Indices: 93893211--93893523 Score: 567
Period size: 154 Copynumber: 2.0 Consensus size: 155
93893201 ATAAGAATAT
*
93893211 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 TAATTTTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
93893276 AATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATA
66 AATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATA
93893339 ATAATTTACCAAAACAAATTTATGC
131 ATAATTTACCAAAACAAATTTATGC
93893364 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATT-TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
93893429 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAATTATTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAA
* *
93893494 TAATCATTTACCAAAACAAATTTCTGC
129 TAATAATTTACCAAAACAAATTTATGC
93893521 TAA
1 TAA
93893524 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 3, Indels: 4
0.96 0.02 0.03
Matches are distributed among these distances:
153 5 0.03
154 86 0.56
155 2 0.01
157 60 0.39
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (155 bp):
TAATTTTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATA
ATAATTTACCAAAACAAATTTATGC
Found at i:93893404 original size:18 final size:17
Alignment explanation
Indices: 93893376--93893410 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93893366 ATTATTAAGA
*
93893376 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
93893393 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
93893411 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:93893664 original size:16 final size:16
Alignment explanation
Indices: 93893643--93893681 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93893633 TTGATTTGCT
*
93893643 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
93893659 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
93893675 ATTACAC
1 ATTACAC
93893682 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:93893682 original size:16 final size:16
Alignment explanation
Indices: 93893656--93893712 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
93893646 ACACAGCTTT
* *
93893656 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
93893672 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
93893688 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
93893704 TCCAATACA
1 TCCAATACA
93893713 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:93896309 original size:18 final size:18
Alignment explanation
Indices: 93896269--93896331 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 18
93896259 TTCCTGAAAC
*
93896269 TTTTATAATTTTTTAAAA
1 TTTTATAAATTTTTAAAA
* * *
93896287 --CTATAAATTTTTGAAT
1 TTTTATAAATTTTTAAAA
93896303 TTTTATAAATATTTTAAAA
1 TTTTATAAAT-TTTTAAAA
93896322 TTTTA-AAATT
1 TTTTATAAATT
93896332 ATTTTGTATT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
16 12 0.34
17 1 0.03
18 11 0.31
19 11 0.31
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (18 bp):
TTTTATAAATTTTTAAAA
Found at i:93896323 original size:20 final size:18
Alignment explanation
Indices: 93896288--93896331 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
93896278 TTTTTAAAAC
*
93896288 TATAAATTTTTGAATTTT
1 TATAAATTTTTAAATTTT
*
93896306 TATAAATATTTTAAAATTT
1 TATAAAT-TTTTAAATTTT
93896325 TA-AAATT
1 TATAAATT
93896332 ATTTTGTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 11 0.48
19 11 0.48
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
TATAAATTTTTAAATTTT
Found at i:93896344 original size:19 final size:19
Alignment explanation
Indices: 93896288--93896344 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
93896278 TTTTTAAAAC
93896288 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAATTTT
* *
93896306 TATAAATATTTTAAAATTT
1 TATAAATATTTTGAATTTT
*
93896325 TA-AAATTATTTTGTATTTT
1 TATAAA-TATTTTGAATTTT
93896344 T
1 T
93896345 TTTGTTGAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 10 0.31
19 22 0.69
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:93897519 original size:25 final size:25
Alignment explanation
Indices: 93897462--93897510 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
93897452 TTTTTATTAT
93897462 ATTACTAA-ATTTATATTTAAAAATA
1 ATTA-TAATATTTATATTTAAAAATA
93897487 ATTATAATATTTA-ATTTAAAAATA
1 ATTATAATATTTATATTTAAAAATA
93897511 TTAATTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTATAATATTTATATTTAAAAATA
Found at i:93906159 original size:29 final size:29
Alignment explanation
Indices: 93906127--93906183 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
93906117 TTTTAATCCT
* *
93906127 TTTTAAATTTTTTATATATAATTTATTTA
1 TTTTAAATATTTTAAATATAATTTATTTA
*
93906156 TTTTAAATATTTTAAATATTATTTATTT
1 TTTTAAATATTTTAAATATAATTTATTT
93906184 TTACTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (29 bp):
TTTTAAATATTTTAAATATAATTTATTTA
Found at i:93906232 original size:3 final size:3
Alignment explanation
Indices: 93906215--93906307 Score: 79
Period size: 3 Copynumber: 30.7 Consensus size: 3
93906205 TATGTAAAAA
*
93906215 ATT ATT A-T ATAT ATT ATT TTT ATT A-T ATAT ATT ATT CATT A-T ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT AT-T ATT ATT -ATT ATT ATT
*
93906260 ATT TTT ATT -TT ATT ATAT ATT ATT -TT ATT ATTT ATT ATTT ATT ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT A-TT ATT A-TT ATT ATT
93906306 AT
1 AT
93906308 GTATAATTTT
Statistics
Matches: 75, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
2 10 0.13
3 47 0.63
4 18 0.24
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:93906239 original size:18 final size:18
Alignment explanation
Indices: 93906216--93906312 Score: 93
Period size: 18 Copynumber: 5.7 Consensus size: 18
93906206 ATGTAAAAAA
93906216 TTATTATATATATTATTT
1 TTATTATATATATTATTT
93906234 TTATTATATATATTA--T
1 TTATTATATATATTATTT
*
93906250 TCATTATAT-TATT-TTT
1 TTATTATATATATTATTT
93906266 ATT-TTATTATATATTA-TT
1 -TTATTA-TATATATTATTT
93906284 TTATTAT-T-TATTATTT
1 TTATTATATATATTATTT
*
93906300 ATTATTATGTATA
1 -TTATTATATATA
93906313 ATTTTAAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 21
0.74 0.02 0.24
Matches are distributed among these distances:
15 9 0.14
16 16 0.24
17 14 0.21
18 25 0.38
19 2 0.03
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (18 bp):
TTATTATATATATTATTT
Found at i:93906258 original size:30 final size:27
Alignment explanation
Indices: 93906215--93906307 Score: 114
Period size: 30 Copynumber: 3.2 Consensus size: 27
93906205 TATGTAAAAA
93906215 ATTATTATATATATTATTTTTATTATATAT
1 ATTATTAT-TATATTATTTTTATT-TAT-T
93906245 ATTATTCATTATATTATTTTTATTTTATT
1 ATTATT-ATTATATTATTTTTA-TTTATT
*
93906274 ATATATTATTTTATTATTTATTATTTATT
1 AT-TATTATTATATTATTT-TTATTTATT
93906303 ATTAT
1 ATTAT
93906308 GTATAATTTT
Statistics
Matches: 58, Mismatches: 1, Indels: 10
0.84 0.01 0.14
Matches are distributed among these distances:
28 3 0.05
29 22 0.38
30 29 0.50
31 4 0.07
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (27 bp):
ATTATTATTATATTATTTTTATTTATT
Found at i:93906658 original size:20 final size:22
Alignment explanation
Indices: 93906625--93906664 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
93906615 TAATTTGTTG
*
93906625 ATTTATTTTCGTATT-TTTTTT
1 ATTTATTTTAGTATTGTTTTTT
93906646 ATTTA-TTTAGTATTGTTTT
1 ATTTATTTTAGTATTGTTTT
93906665 AGTATGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.72
Consensus pattern (22 bp):
ATTTATTTTAGTATTGTTTTTT
Found at i:93906664 original size:21 final size:21
Alignment explanation
Indices: 93906625--93906664 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
93906615 TAATTTGTTG
*
93906625 ATTTATTTTCGTATTTTTTTT
1 ATTTATTTTAGTATTTTTTTT
*
93906646 ATTTA-TTTAGTATTGTTTT
1 ATTTATTTTAGTATTTTTTT
93906665 AGTATGTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.72
Consensus pattern (21 bp):
ATTTATTTTAGTATTTTTTTT
Found at i:93911060 original size:16 final size:16
Alignment explanation
Indices: 93911039--93911069 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
93911029 TGGTAGAGGA
93911039 AATGATTGAGAACGCC
1 AATGATTGAGAACGCC
93911055 AATGATTGAGAACGC
1 AATGATTGAGAACGC
93911070 TAGAAGGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.19
Consensus pattern (16 bp):
AATGATTGAGAACGCC
Found at i:93918148 original size:90 final size:89
Alignment explanation
Indices: 93918003--93918395 Score: 560
Period size: 90 Copynumber: 4.4 Consensus size: 89
93917993 TCACTGTTAG
**
93918003 TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTTGTGTGT
1 TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTG-
*
93918068 TTACATCGAAGCAGATCAAAGATGA
65 TTACATCGAAGCAGATCGAAGATGA
* * *
93918093 TAGATTTGGTGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAGCAGATTTGACATTC--GTG-
1 TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGT
*
93918155 TATATCGAAGCAGATCGAAGATGA
66 TACATCGAAGCAGATCGAAGATGA
* * *
93918179 CAGATTTGGCGTCTCTGTATTAGACGGGGAGGAGATCGAAGATAGCAGATTTGACATTCATGTAG
1 TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGT-G
93918244 TTACATCGAAGCAGATCGAAGATGA
65 TTACATCGAAGCAGATCGAAGATGA
* * * *
93918269 CAGATTTGGCGTCTCTGTGTTAGACCGAGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGT
1 TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTG-
* *
93918334 TTACATTGAAGAAGATCGAAGAT-A
65 TTACATCGAAGCAGATCGAAGATGA
* *
93918358 GTAGATTTGGCGTCTCTATATTTGACGGGGAGCAGATC
1 -TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC
93918396 AAGGATATTA
Statistics
Matches: 273, Mismatches: 24, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
86 77 0.28
88 5 0.02
89 3 0.01
90 188 0.69
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (89 bp):
TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGT
TACATCGAAGCAGATCGAAGATGA
Found at i:93918303 original size:176 final size:178
Alignment explanation
Indices: 93918004--93918395 Score: 558
Period size: 176 Copynumber: 2.2 Consensus size: 178
93917994 CACTGTTAGT
**
93918004 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTTGTGTGTT
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGTT
* * ** *
93918069 TACATCGAAGCAGATCAAAGATGATAGATTTGGTGTCTCTGTATTAGATGGGGAGCAGATCGAAG
66 TACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACCGAGAGCAGATCGAAG
* * *
93918134 ATAGCAGATTTGACATTC-GTG-TATATCGAAGCAGATCGAAGAT-GAC
131 ATAGCAGATCTGACATTCAGTGTTACATCGAAGAAGATCGAAGATAG-C
* *
93918180 AGATTTGGCGTCTCTGTATTAGACGGGGAGGAGATCGAAGATAGCAGATTTGACATTCATGTAG-
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGT-GT
* *
93918244 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTGTTAGACCGAGAGCAGATCGAA
65 TTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACCGAGAGCAGATCGAA
* *
93918309 GATAGCAGATCTGACATTCATGTGTTTACATTGAAGAAGATCGAAGATAGT
130 GATAGCAGATCTGACATTCA-GTG-TTACATCGAAGAAGATCGAAGATAGC
* *
93918360 AGATTTGGCGTCTCTATATTTGACGGGGAGCAGATC
1 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC
93918396 AAGGATATTA
Statistics
Matches: 191, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
176 134 0.70
177 1 0.01
178 3 0.02
180 52 0.27
181 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (178 bp):
AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGTT
TACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACCGAGAGCAGATCGAAG
ATAGCAGATCTGACATTCAGTGTTACATCGAAGAAGATCGAAGATAGC
Found at i:93918395 original size:45 final size:45
Alignment explanation
Indices: 93918004--93918395 Score: 243
Period size: 45 Copynumber: 8.8 Consensus size: 45
93917994 CACTGTTAGT
*
93918004 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATCGAAGATAGC
* * * * * * ** * * *
93918049 AGATCTGACATTTGTGTGTTT-ACATCGAAGCAGATCAAAGAT-GAT
1 AGATTTGGCGTCTCTGTATTTGAC-GGGGAGCAGATCGAAGATAG-C
* * *
93918094 AGATTTGGTGTCTCTGTATTAGATGGGGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATCGAAGATAGC
* * * *
93918139 AGATTTGACAT-TCGTGTATAT--C--GAAGCAGATCGAAGAT-GAC
1 AGATTTGGCGTCTC-TGTATTTGACGGGGAGCAGATCGAAGATAG-C
* *
93918180 AGATTTGGCGTCTCTGTATTAGACGGGGAGGAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATCGAAGATAGC
* * * ** *
93918225 AGATTTGACAT-TCATGTAGTT-ACATCGAAGCAGATCGAAGAT-GAC
1 AGATTTGGCGTCTC-TGTATTTGAC-GGGGAGCAGATCGAAGATAG-C
* * * *
93918270 AGATTTGGCGTCTCTGTGTTAGACCGAGAGCAGATCGAAGATAGC
1 AGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATCGAAGATAGC
* * * * ** * * *
93918315 AGATCTGACAT-TCATGTGTTT-ACATTGAAGAAGATCGAAGATAGT
1 AGATTTGGCGTCTC-TGTATTTGAC-GGGGAGCAGATCGAAGATAGC
*
93918360 AGATTTGGCGTCTCTATATTTGACGGGGAGCAGATC
1 AGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATC
93918396 AAGGATATTA
Statistics
Matches: 250, Mismatches: 75, Indels: 44
0.68 0.20 0.12
Matches are distributed among these distances:
40 1 0.00
41 30 0.12
42 2 0.01
43 1 0.00
44 14 0.06
45 190 0.76
46 12 0.05
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (45 bp):
AGATTTGGCGTCTCTGTATTTGACGGGGAGCAGATCGAAGATAGC
Done.