Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 288 of 332
Found at i:96069842 original size:42 final size:43
Alignment explanation
Indices: 96069796--96069904 Score: 113
Period size: 42 Copynumber: 2.6 Consensus size: 43
96069786 GTTTCTGTTC
*
96069796 AGCTCTATTGAGCTTCTGGTT-AACCCTTATGGGATT-CCATTT
1 AGCTCTATTGAGCTTCTGATTCAACCCTTATGGG-TTACCATTT
* **
96069838 AGCTCT-TACGAGCTTCT-ATTCAACCCTTATGGGTTACTGTTT
1 AGCTCTAT-TGAGCTTCTGATTCAACCCTTATGGGTTACCATTT
96069880 AGCTCTCA-TGAGCTTCTG-TTCAACC
1 AGCTCT-ATTGAGCTTCTGATTCAACC
96069905 TTCGGGCTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
41 5 0.09
42 51 0.91
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (43 bp):
AGCTCTATTGAGCTTCTGATTCAACCCTTATGGGTTACCATTT
Found at i:96071836 original size:21 final size:23
Alignment explanation
Indices: 96071811--96071856 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
96071801 TAAACAATTC
96071811 AAATT-ATAA-TCAAACATATAT
1 AAATTCATAATTCAAACATATAT
**
96071832 AAATTCATAATTCAATTATATAT
1 AAATTCATAATTCAAACATATAT
96071855 AA
1 AA
96071857 TAATTCAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 4 0.19
23 12 0.57
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATTCATAATTCAAACATATAT
Found at i:96074999 original size:24 final size:25
Alignment explanation
Indices: 96074944--96075000 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 25
96074934 ACCCTAATAT
* *
96074944 TAATTGTAGAAAAATACAAATAGAC
1 TAATTGTAAAAAAATACAAACAGAC
* *
96074969 AATATTGTAAAAAAATACTAACAGA-
1 TA-ATTGTAAAAAAATACAAACAGAC
96074994 TAATTGT
1 TAATTGT
96075001 TAAATATGAC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
24 5 0.19
25 2 0.08
26 19 0.73
ACGTcount: A:0.54, C:0.07, G:0.11, T:0.28
Consensus pattern (25 bp):
TAATTGTAAAAAAATACAAACAGAC
Found at i:96079149 original size:20 final size:18
Alignment explanation
Indices: 96079102--96079150 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
96079092 ACAAGATAAA
96079102 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
96079119 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
96079139 ATTAAATTAATA
1 ATTAAATTAATA
96079151 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:96090147 original size:96 final size:96
Alignment explanation
Indices: 96089957--96090159 Score: 343
Period size: 96 Copynumber: 2.1 Consensus size: 96
96089947 TTGGGGTGGG
* *
96089957 AACCCACCTATCACTCCTTACATTCTCCACGTGGCATTCATCTAACACATTCTCACCTATGCTAG
1 AACCCACCTATCACTCCTTACATTCTCCACGTGGCATTCATCTAACACACTCCCACCTATGCTAG
96090022 CCTCCAACTACTCACACACACAATAAAAAAC
66 CCTCCAACTACTCACACACACAATAAAAAAC
* * *
96090053 AACCCACCTATCATTCCTTACATTGTCCACGTGGCATTCATCTAAGACACTCCCACCTATGCTAG
1 AACCCACCTATCACTCCTTACATTCTCCACGTGGCATTCATCTAACACACTCCCACCTATGCTAG
*
96090118 CCCTCCAACTACTCAGACACACAATAAAAAAC
66 -CCTCCAACTACTCACACACACAATAAAAAAC
96090150 AACCCACCTA
1 AACCCACCTA
96090160 CTTCATATCC
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
96 60 0.60
97 40 0.40
ACGTcount: A:0.33, C:0.37, G:0.06, T:0.23
Consensus pattern (96 bp):
AACCCACCTATCACTCCTTACATTCTCCACGTGGCATTCATCTAACACACTCCCACCTATGCTAG
CCTCCAACTACTCACACACACAATAAAAAAC
Found at i:96097809 original size:21 final size:21
Alignment explanation
Indices: 96097770--96097811 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
96097760 CAACAAGGGG
**
96097770 AATCCATCTGCAATTATAATT
1 AATCCATCTGCAAACATAATT
*
96097791 AATCCTTCTGCAAACATAATT
1 AATCCATCTGCAAACATAATT
96097812 TCTGGTAGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (21 bp):
AATCCATCTGCAAACATAATT
Found at i:96099156 original size:11 final size:11
Alignment explanation
Indices: 96099140--96099164 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96099130 TTTGTGTGTT
96099140 AAGAGTGGATA
1 AAGAGTGGATA
96099151 AAGAGTGGATA
1 AAGAGTGGATA
96099162 AAG
1 AAG
96099165 GCATCGGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (11 bp):
AAGAGTGGATA
Found at i:96100237 original size:19 final size:19
Alignment explanation
Indices: 96100213--96100254 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
96100203 TACTAATCCC
96100213 ATTGCGTACATTATGTTTG
1 ATTGCGTACATTATGTTTG
96100232 ATTGCGTACATTATGTTTG
1 ATTGCGTACATTATGTTTG
96100251 ATTG
1 ATTG
96100255 TGTGACAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.48
Consensus pattern (19 bp):
ATTGCGTACATTATGTTTG
Found at i:96104668 original size:16 final size:16
Alignment explanation
Indices: 96104647--96104677 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96104637 TTTATTATTT
96104647 TATTAACATAATATAA
1 TATTAACATAATATAA
*
96104663 TATTAATATAATATA
1 TATTAACATAATATA
96104678 TAAAATATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:96111771 original size:28 final size:28
Alignment explanation
Indices: 96111719--96111807 Score: 78
Period size: 28 Copynumber: 3.2 Consensus size: 28
96111709 TATTCATTTA
* * *
96111719 TTTA-TTATTCCTTCATTTTTCTTAACTT
1 TTTATTTATACCTTCATTATTATTAAC-T
*
96111747 TTTATTT-T-CTTTCATTGATTATTAA-T
1 TTTATTTATACCTTCATT-ATTATTAACT
*
96111773 TTTATTTATACCTTCATTATTATTACCAT
1 TTTATTTATACCTTCATTATTATTAAC-T
96111802 TTTATT
1 TTTATT
96111808 ATCTATTATT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
26 8 0.16
27 15 0.30
28 18 0.36
29 9 0.18
ACGTcount: A:0.22, C:0.13, G:0.01, T:0.63
Consensus pattern (28 bp):
TTTATTTATACCTTCATTATTATTAACT
Found at i:96111837 original size:16 final size:17
Alignment explanation
Indices: 96111802--96111841 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
96111792 TTATTACCAT
96111802 TTTATTATCTATTATTA
1 TTTATTATCTATTATTA
96111819 TTTATTCATCTA-T-TTA
1 TTTATT-ATCTATTATTA
96111835 TTTATTA
1 TTTATTA
96111842 CCCCTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.05
16 9 0.41
17 7 0.32
18 5 0.23
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTATTATCTATTATTA
Found at i:96115478 original size:15 final size:15
Alignment explanation
Indices: 96115458--96115486 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
96115448 TATATAATAA
96115458 ATTATTTTAATAATT
1 ATTATTTTAATAATT
96115473 ATTATTTTAATAAT
1 ATTATTTTAATAAT
96115487 AAATTTTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTATTTTAATAATT
Found at i:96116383 original size:23 final size:23
Alignment explanation
Indices: 96116353--96116397 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
96116343 TCATTGAAAA
*
96116353 CAACTTTTATTAAATATTTTCAC
1 CAACTTTTATCAAATATTTTCAC
96116376 CAACTTTTATCAAATATTTTCA
1 CAACTTTTATCAAATATTTTCA
96116398 AGAAATCTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.47
Consensus pattern (23 bp):
CAACTTTTATCAAATATTTTCAC
Found at i:96119197 original size:21 final size:21
Alignment explanation
Indices: 96119158--96119198 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
96119148 TATATACAAT
96119158 GAGAAAATAAAAATAAAAATA
1 GAGAAAATAAAAATAAAAATA
*
96119179 GAGAATAATAAACATAAAAA
1 GAGAA-AATAAAAATAAAAA
96119199 GTTACATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.15
Consensus pattern (21 bp):
GAGAAAATAAAAATAAAAATA
Found at i:96121457 original size:16 final size:17
Alignment explanation
Indices: 96121423--96121467 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
96121413 AGGTACACTC
96121423 ATATTATTTTTAATTTTTA
1 ATATTA-TTTTAA-TTTTA
96121442 ATATTATTTTAA-TTTA
1 ATATTATTTTAATTTTA
96121458 ATATT-TTTTA
1 ATATTATTTTA
96121468 TATATTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 5 0.19
16 9 0.35
18 6 0.23
19 6 0.23
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATTATTTTAATTTTA
Found at i:96123530 original size:27 final size:25
Alignment explanation
Indices: 96123456--96123515 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
96123446 ATTTATTTTA
96123456 ATATTTTTAATACATTTGATATATT
1 ATATTTTTAATACATTTGATATATT
96123481 ATATTTTTAATACATTTGATATATT
1 ATATTTTTAATACATTTGATATATT
96123506 ATATTTTTAA
1 ATATTTTTAA
96123516 ATTTATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (25 bp):
ATATTTTTAATACATTTGATATATT
Found at i:96128464 original size:27 final size:28
Alignment explanation
Indices: 96128410--96128464 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
96128400 ATGTCTTGTT
* *
96128410 GAGCTAGGGGTTCGCCAGTCTATTTGGC
1 GAGCTAGGGGTTCACCAGTCTATGTGGC
*
96128438 GAGCTA-GGGTTCACCAGTCTGTGTGGC
1 GAGCTAGGGGTTCACCAGTCTATGTGGC
96128465 AAACAGGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.15, C:0.22, G:0.36, T:0.27
Consensus pattern (28 bp):
GAGCTAGGGGTTCACCAGTCTATGTGGC
Found at i:96134177 original size:12 final size:13
Alignment explanation
Indices: 96134160--96134196 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
96134150 GAACCGGACA
96134160 CGAACCGAA-CTC
1 CGAACCGAAGCTC
96134172 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
96134184 CGAACCGTAGCTC
1 CGAACCGAAGCTC
96134197 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:96139377 original size:17 final size:18
Alignment explanation
Indices: 96139346--96139380 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
96139336 TAAATTCATG
96139346 CTTTTTGTCCCTAAATTT
1 CTTTTTGTCCCTAAATTT
*
96139364 CTTTTTG-CCTTAAATTT
1 CTTTTTGTCCCTAAATTT
96139381 AGTCCCTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (18 bp):
CTTTTTGTCCCTAAATTT
Found at i:96139793 original size:2 final size:2
Alignment explanation
Indices: 96139786--96139812 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
96139776 ATACATCATT
96139786 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
96139813 TGTTTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:96140003 original size:108 final size:108
Alignment explanation
Indices: 96139814--96140013 Score: 319
Period size: 108 Copynumber: 1.9 Consensus size: 108
96139804 TCTCTCTCTT
*
96139814 GTTTTTGCTTAAAAATATATTGAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCACCCCACCC
1 GTTTTTGCTTAAAAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCC
** * *
96139879 TTGTTACTCAGCCCAACATACTCCTAATTTATTATATATATAC
66 CGGTTACTCAACCCAACACACTCCTAATTTATTATATATATAC
* * *
96139922 GTTTTTTCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCTAAGCACCCCACCC
1 GTTTTTGCTTAAAAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCC
*
96139987 CGGTTACTCAACCCAACACATTCCTAA
66 CGGTTACTCAACCCAACACACTCCTAA
96140014 AAAAAATTAT
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 83 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (108 bp):
GTTTTTGCTTAAAAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCC
CGGTTACTCAACCCAACACACTCCTAATTTATTATATATATAC
Found at i:96149945 original size:14 final size:14
Alignment explanation
Indices: 96149926--96149955 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
96149916 TATCCATAGA
96149926 GACACACTAGGACG
1 GACACACTAGGACG
96149940 GACACACTAGGACG
1 GACACACTAGGACG
96149954 GA
1 GA
96149956 TGTAACCACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.30, T:0.07
Consensus pattern (14 bp):
GACACACTAGGACG
Found at i:96151560 original size:22 final size:22
Alignment explanation
Indices: 96151535--96151602 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
96151525 ACAAAGGGCG
96151535 ACTCTAGTGACACCTCTAAATA
1 ACTCTAGTGACACCTCTAAATA
* *
96151557 ACTC-A--G-CACC-ATAAAGGGTG
1 ACTCTAGTGACACCTCTAAA---TA
96151577 ACTCTAGTGACACCTCTAAATA
1 ACTCTAGTGACACCTCTAAATA
96151599 ACTC
1 ACTC
96151603 AGCACCATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 16
0.63 0.07 0.30
Matches are distributed among these distances:
17 4 0.12
18 4 0.12
19 1 0.03
20 5 0.15
21 2 0.06
22 9 0.26
23 1 0.03
24 4 0.12
25 4 0.12
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (22 bp):
ACTCTAGTGACACCTCTAAATA
Found at i:96151586 original size:42 final size:42
Alignment explanation
Indices: 96151527--96151610 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
96151517 TCGGCCACAC
96151527 AAAGGGCGACTCTAGTGACACCTCTAAATAACTCAGCACCAT
1 AAAGGGCGACTCTAGTGACACCTCTAAATAACTCAGCACCAT
*
96151569 AAAGGGTGACTCTAGTGACACCTCTAAATAACTCAGCACCAT
1 AAAGGGCGACTCTAGTGACACCTCTAAATAACTCAGCACCAT
96151611 TGGACCGGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (42 bp):
AAAGGGCGACTCTAGTGACACCTCTAAATAACTCAGCACCAT
Found at i:96154568 original size:4 final size:4
Alignment explanation
Indices: 96154548--96154589 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
96154538 ATAAAGTGAT
* *
96154548 AATA AAT- AATA ATTA AATAA AATA AATA AATA AATG AATA AA
1 AATA AATA AATA AATA AAT-A AATA AATA AATA AATA AATA AA
96154590 AATAAACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 3 0.09
4 25 0.78
5 4 0.12
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:96159831 original size:16 final size:16
Alignment explanation
Indices: 96159806--96159845 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
96159796 CTAAAATAAA
96159806 ATAATA-ATAA-AAAT
1 ATAATAGATAAGAAAT
96159820 ATAAATAGATAAGAAAT
1 AT-AATAGATAAGAAAT
96159837 ATAATAGAT
1 ATAATAGAT
96159846 GAGCGATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 4 0.17
16 11 0.48
17 6 0.26
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (16 bp):
ATAATAGATAAGAAAT
Found at i:96160078 original size:45 final size:44
Alignment explanation
Indices: 96159998--96160221 Score: 157
Period size: 41 Copynumber: 5.1 Consensus size: 44
96159988 CAAAAAGCAA
* * *
96159998 ATATAATAATAATAT-TAAAATAAAATA-AATAAAAATA-ATACT
1 ATAT-ATAAAAATATATAATATACAATACAATAAAAATATATACT
* *
96160040 ATATATAAAAATATGTACATATACATATACAATAAAAATATACACT
1 ATATATAAAAATATATA-ATATACA-ATACAATAAAAATATATACT
* * * *
96160086 AATATATAATAATA-ATAATA-ATAATACAA-AAAGCATATATAAT
1 -ATATATAAAAATATATAATATACAATACAATAAA-AATATATACT
* *
96160129 ATA-ATAAAAGTAT-TAAAATA-AAGT--AATAAAAA-ATAATACT
1 ATATATAAAAATATATAATATACAA-TACAATAAAAATAT-ATACT
* *
96160169 ATATATAAATATATATACATATACATATACAATAAAAATATACACT
1 ATATATAAAAATATATA-ATATACA-ATACAATAAAAATATATACT
96160215 AATATAT
1 -ATATAT
96160222 GATGATAATA
Statistics
Matches: 142, Mismatches: 19, Indels: 37
0.72 0.10 0.19
Matches are distributed among these distances:
39 2 0.01
40 10 0.07
41 33 0.23
42 16 0.11
43 22 0.15
44 7 0.05
45 14 0.10
46 18 0.13
47 20 0.14
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (44 bp):
ATATATAAAAATATATAATATACAATACAATAAAAATATATACT
Found at i:96160472 original size:138 final size:138
Alignment explanation
Indices: 96160126--96160526 Score: 671
Period size: 142 Copynumber: 2.9 Consensus size: 138
96160116 AAGCATATAT
* *
96160126 AATATAATAAAAGTATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATATACATAT
1 AATATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATCTATACATAT
*
96160191 ACATATACAATAAAAATATACACTAATATATGATGATAATAATAATAATAGTAATAATATTGAAA
66 ACATATATAATAAAAATATACACTAATATA--ATGATAATAATAAT-A-A-TAATAATATTGAAA
*
96160256 TATCAAAAAAGCA
126 TACCAAAAAAGCA
96160269 AATATAATAAAAAT-TTAAAATAAAGTAATAAAAAATAATACTATATATAAATATCTATACATAT
1 AATATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATCTATACATAT
96160333 ACATATATAATAAAAATATACACTAATAT-ATGATAATAATAATAATAATAATATTGAAATACCA
66 ACATATATAATAAAAATATACACTAATATAATGATAATAATAATAATAATAATATTGAAATACC-
96160397 AAAAAAGCA
130 AAAAAAGCA
96160406 AATATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATCTATACATAT
1 AATATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATCTATACATAT
*
96160471 ACATATATAATAAAAAAATATACACTAATATAATAATAATAATAATAATAATAATA
66 ACATATATAAT--AAAAATATACACTAATATAATGATAATAATAATAATAATAATA
96160527 ATAATAATAA
Statistics
Matches: 248, Mismatches: 5, Indels: 12
0.94 0.02 0.05
Matches are distributed among these distances:
136 17 0.07
137 24 0.10
138 62 0.25
139 14 0.06
140 18 0.07
141 23 0.09
142 77 0.31
143 13 0.05
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (138 bp):
AATATAATAAAAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATCTATACATAT
ACATATATAATAAAAATATACACTAATATAATGATAATAATAATAATAATAATATTGAAATACCA
AAAAAGCA
Found at i:96160506 original size:3 final size:3
Alignment explanation
Indices: 96160496--96160577 Score: 105
Period size: 3 Copynumber: 27.7 Consensus size: 3
96160486 AAATATACAC
* *
96160496 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
96160543 TAA TAT TAA TAA TAT TAGA -AA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TA
96160578 TTTAATAAAG
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
2 3 0.04
3 65 0.96
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:96160548 original size:138 final size:135
Alignment explanation
Indices: 96159959--96160575 Score: 679
Period size: 138 Copynumber: 4.5 Consensus size: 135
96159949 AATGATAATG
* * * * ** * *
96159959 ATAACAATACTAACAATAATAATGAAATACAAAAAGCAAATATAATAATAATATTAAAATAAAAT
1 ATAATAATAATAATAATAATAATAAAATA-AAAGTG-AAATATAATAAAAATATTAAAATAAAGT
* *
96160024 AA-ATAAAAATAATACTATATATAAAAATATGTACATATACATATACAATAAAAATATACACTAA
64 AATA-AAAAATAATACTATATATAAATATATATACATATACATATACAATAAAAATATACACTAA
96160088 TAT--ATA
128 TATAGATA
* * *
96160094 ATAATAATAATAATAATACA-AA-AAGCAT-ATA-T--AATATAATAAAAGTATTAAAATAAAGT
1 ATAATAATAATAATAATA-ATAATAA-AATAAAAGTGAAATATAATAAAAATATTAAAATAAAGT
96160153 AATAAAAAATAATACTATATATAAATATATATACATATACATATACAATAAAAATATACACTAAT
64 AATAAAAAATAATACTATATATAAATATATATACATATACATATACAATAAAAATATACACT-A-
96160218 ATATGATGATA
127 ATAT-A-GATA
* * **
96160229 ATAATAATAATAGTAATAATATTGAAATATCAAAAAAGCAAATATAATAAAAAT-TTAAAATAAA
1 ATAATAATAATAATAATAATAAT-AAA-AT-AAAAGTG-AAATATAATAAAAATATTAAAATAAA
* *
96160293 GTAATAAAAAATAATACTATATATAAATATCTATACATATACATATATAATAAAAATATACACTA
62 GTAATAAAAAATAATACTATATATAAATATATATACATATACATATACAATAAAAATATACACTA
96160358 ATATATGATA
127 ATATA-GATA
* *
96160368 ATAATAATAATAATAATATTGAAATACCAAA-AAAAG-CAAATATAATAAAAATATTAAAATAAA
1 ATAATAATAATAATAATAAT--AATA--AAATAAAAGTGAAATATAATAAAAATATTAAAATAAA
* *
96160431 GTAATAAAAAATAATACTATATATAAATATCTATACATATACATATATAATAAAAAAATATACAC
62 GTAATAAAAAATAATACTATATATAAATATATATACATATACATATACAAT--AAAAATATACAC
96160496 TAATATA-ATA
125 TAATATAGATA
* *
96160506 ATAATAATAATAATAATAATAATAATAATAATAGTGATAATAT--TAATAATATTAGAAATAATA
1 ATAATAATAATAATAATAATAATAA-AATAAAAGTGA-AATATAATAAAAATATTA-AAATAA-A
*
96160569 ATAATAA
62 GTAATAA
96160576 TATTTAATAA
Statistics
Matches: 420, Mismatches: 30, Indels: 61
0.82 0.06 0.12
Matches are distributed among these distances:
129 82 0.20
130 2 0.00
131 4 0.01
133 2 0.00
134 3 0.01
135 42 0.10
136 19 0.05
137 26 0.06
138 95 0.23
139 30 0.07
140 24 0.06
141 4 0.01
142 74 0.18
143 13 0.03
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (135 bp):
ATAATAATAATAATAATAATAATAAAATAAAAGTGAAATATAATAAAAATATTAAAATAAAGTAA
TAAAAAATAATACTATATATAAATATATATACATATACATATACAATAAAAATATACACTAATAT
AGATA
Found at i:96162326 original size:76 final size:76
Alignment explanation
Indices: 96162208--96163132 Score: 943
Period size: 76 Copynumber: 12.1 Consensus size: 76
96162198 GAAAAAAGTA
* * * *
96162208 AAAATTGAAAATACCACAGTGTGTGACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TT
1 AAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
96162272 TTTTGAAAAAT
66 TTTTGAAAAAT
* * * *
96162283 AGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATT
1 A-AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
**
96162348 TTTTTTGAAACGT
64 TTTTTTGAAAAAT
** * **
96162361 -AAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
**
96162425 TCTTTGAAACGT
66 T-TTTGAAAAAT
* ** * ** * *
96162437 -AAATTGAAAACACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATAAGTTGATTT
1 AAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
96162501 TTTATTGAAAAAT
65 TTT-TTGAAAAAT
***
96162514 AGAAACAAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 A-AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
96162579 TTTTTTGAAACAT
64 TTTTTTGAAAAAT
** * ** * * *
96162592 -AAATTGAAAATACCTCAATGGGTGATTTGAAGCTCAACTCACCTTTCGTAATATGAGTTGATTT
1 AAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
96162656 TTTTTTGAAAAAT
64 TTTTTTGAAAAAT
*** * *
96162669 AGAAACAAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCCCAATATGAGTTGATT
1 A-AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
96162734 TTTTTTGAAACAT
64 TTTTTTGAAAAAT
* ** ** * * *
96162747 -AAATTGAAAATACTTCAATAG-GTGATTTGAAGCTCAACTCACCTTTCGTAATATGAGTTGATT
1 AAAATTGAAAATACCTC-AGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
96162810 TTTTTTTTGAAAAAT
63 -TTTTTTTGAAAAAT
* * * *
96162825 AGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATT
1 A-AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
96162890 TTGTTGAAACAT
65 TTTTTGAAAAAT
* * * ** * *
96162902 -AAATTGAAAATACCTTAGTGCG-GATTTGAGGCTGAACTCACCTTTCGCAATATGAGTTGATTT
1 AAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
96162965 TTTTGAAAAAAC
66 TTTTG-AAAAAT
* * **
96162977 ATAAATTGAAAATACCTCAGCATGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
1 A-AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
96163040 TTTTTGAAAAAC
65 TTTTTGAAAAAT
* * **
96163052 AGAAATTGAAAATACCTCGGAGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 A-AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
96163117 TTTTTGAAAAAT
65 TTTTTGAAAAAT
96163129 AAAA
1 AAAA
96163133 ATATCAGGAT
Statistics
Matches: 712, Mismatches: 115, Indels: 45
0.82 0.13 0.05
Matches are distributed among these distances:
74 41 0.06
75 90 0.13
76 280 0.39
77 69 0.10
78 78 0.11
79 106 0.15
80 48 0.07
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (76 bp):
AAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGAAAAAT
Found at i:96162577 original size:155 final size:153
Alignment explanation
Indices: 96162215--96163129 Score: 1108
Period size: 155 Copynumber: 6.0 Consensus size: 153
96162205 GTAAAAATTG
* * ** *
96162215 AAAATACCACAGTGTGTGACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTTGAA
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * ** * ***
96162279 AAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTT
66 ACAT--AAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTT
** * *
96162344 GATTTTTTTTGAAACGT--AAATTG
129 GATTTTTTTTGAAAAATAGAAACTA
** * ***
96162367 AAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTTGA
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTTGA
* * *
96162432 AACGTAAATTGAAAACACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATAAGTTG
65 AACATAAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
*
96162497 ATTTTTTATTGAAAAATAGAAACAA
130 ATTTTTT-TTGAAAAATAGAAACTA
*
96162522 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA
* * *
96162587 AACATAAATTGAAAATACCTCAATGGGTGATTTGAAGCTCAACTCACCTTTCGTAATATGAGTTG
65 AACATAAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
*
96162652 ATTTTTTTTTGAAAAATAGAAACAA
130 A-TTTTTTTTGAAAAATAGAAACTA
*
96162677 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCCCAATATGAGTTGATTTTTTTTGA
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA
* * *
96162742 AACATAAATTGAAAATACTTCAATAG-GTGATTTGAAGCTCAACTCACCTTTCGTAATATGAGTT
65 AACATAAATTGAAAATACCTCAAT-GCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTT
96162806 GATTTTTTTTTTGAAAAATAGAAACTA
129 GA--TTTTTTTTGAAAAATAGAAACTA
* *
96162833 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTGTTGAA
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * * *
96162898 ACATAAATTGAAAATACCTTAGTGCG-GATTTGAGGCTGAACTCACCTTTCGCAATATGAGTTGA
66 ACATAAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA
* * * *
96162962 -TTTTTTTGAAAAAACATAAATTG
131 TTTTTTTTG-AAAAATAGAAACTA
* * * ***
96162985 AAAATACCTCAGCATGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * **** *
96163050 ACAGAAATTGAAAATACCTCGGA-GTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
66 ACATAAATTGAAAATACCTC-AATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
96163114 A-TTTTTTTGAAAAATA
130 ATTTTTTTTGAAAAATA
96163130 AAAATATCAG
Statistics
Matches: 680, Mismatches: 70, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
151 8 0.01
152 200 0.29
153 50 0.07
154 44 0.06
155 291 0.43
156 87 0.13
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (153 bp):
AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
ACATAAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA
TTTTTTTTGAAAAATAGAAACTA
Found at i:96162609 original size:231 final size:228
Alignment explanation
Indices: 96162209--96163131 Score: 1032
Period size: 231 Copynumber: 4.0 Consensus size: 228
96162199 AAAAAAGTAA
* * *
96162209 AAATTGAAAATACCACAGTGTGTGACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTT
1 AAATTGAAAATACCTCAGTGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
96162273 TTTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATA
66 TTTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATA
* * ***
96162338 TGAGTTGATTTTTTTTGAAACGTAAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCAC
131 TGAGTTGATTTTTTTTGAAACATAAATTGAAAATACCTCAATGTGTGACCCGAGGCTCAACTCAC
*
96162403 CTCTCGCAATATGAGTTGATTTTCTTTGAAACGT
196 CTCTCGCAATATGAGTTGATTTT-TTTGAAACAT
* * * * *
96162437 AAATTGAAAACACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATAAGTTGATTTT
1 AAATTGAAAATACCTCAGTGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* *
96162502 TTATTGAAAAATAGAAACAAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAA
65 TT-TTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAA
* *** *
96162567 TATGAGTTGATTTTTTTTGAAACATAAATTGAAAATACCTCAATGGGTGATTTGAAGCTCAACTC
129 TATGAGTTGATTTTTTTTGAAACATAAATTGAAAATACCTCAATGTGTGACCCGAGGCTCAACTC
* * *
96162632 ACCTTTCGTAATATGAGTTGATTTTTTTTTGAAAAAT
194 ACCTCTCGCAATATGAGTTGA--TTTTTTTGAAACAT
*** * * ** *
96162669 AGAAACAAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCCCAATATGAGTTGATT
1 --AAATTGAAAATACCTCAGTGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
* * * * ** *** * * *
96162734 TTTTTTGAAACAT--AAATTGAAAATACTTCAATAG-GTGATTTGAAGCTCAACTCACCTTTCGT
63 TTTTTTGAAAAATAGAAACTAAAAATACCTC-AGCGTGTGACCCGAGGCTCAACTCACCTCTCGC
* * * **
96162796 AATATGAGTTGATTTTTTTTTTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCT
127 AATATGAGTTGA--TTTTTTTTGAAACAT--AAATTGAAAATACCTCAATGTGTGACCCGAGGCT
* *
96162861 CAACTCACCTTTCGCAATATGAGTTGATTTTGTTGAAACAT
188 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACAT
* * * *
96162902 AAATTGAAAATACCTTAGTGCG-GATTTGAGGCTGAACTCACCTTTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGTGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * * * *
96162966 TTTGAAAAAACATAAATTGAAAATACCTCAGCATGTGTCCCAAGGCTCAACTCACCTCTCGCAAT
66 TTTG-AAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAAT
*** * * *
96163031 ATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCGGA-GTGTGACCCAAGGCTCAACTC
130 ATGAGTTGATTTTTTTTGAAACATAAATTGAAAATACCTC-AATGTGTGACCCGAGGCTCAACTC
*
96163094 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAT
194 ACCTCTCGCAATATGAGTTGATTTTTTTGAAACAT
96163129 AAA
1 AAA
96163132 AATATCAGGA
Statistics
Matches: 585, Mismatches: 93, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
227 69 0.12
228 55 0.09
229 17 0.03
230 40 0.07
231 204 0.35
232 57 0.10
233 38 0.06
234 54 0.09
235 51 0.09
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (228 bp):
AAATTGAAAATACCTCAGTGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGAAAAATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTGAAACATAAATTGAAAATACCTCAATGTGTGACCCGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTTTGAAACAT
Found at i:96175185 original size:16 final size:16
Alignment explanation
Indices: 96175160--96175199 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
96175150 CTAAAATAAA
96175160 ATAATA-ATAA-AAAT
1 ATAATAGATAAGAAAT
96175174 ATAAATAGATAAGAAAT
1 AT-AATAGATAAGAAAT
96175191 ATAATAGAT
1 ATAATAGAT
96175200 GAGCGATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 4 0.17
16 11 0.48
17 6 0.26
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (16 bp):
ATAATAGATAAGAAAT
Found at i:96175451 original size:3 final size:3
Alignment explanation
Indices: 96175437--96175614 Score: 65
Period size: 3 Copynumber: 58.7 Consensus size: 3
96175427 AAATATACAC
**
96175437 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TACA -AA -AA GCA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
* * *
96175482 TATA TAA T-A TATA TAA -AA GTAT TAA -AA TAA -AG TAA TAA AAA TAA
1 TA-A TAA TAA TA-A TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
96175526 TAC T-A TATA TAA -ATA TCTA TACA T-A TACA TATA TAA TAA -AA -AA
1 TAA TAA TA-A TAA TA-A T-AA TA-A TAA TA-A TA-A TAA TAA TAA TAA
* *
96175569 T-A TACA CTAA TATA TGA TAA TAA TAA TAA TAA TAA TAG TAA TAA TA
1 TAA TA-A -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
96175615 TTGAAATACC
Statistics
Matches: 134, Mismatches: 18, Indels: 46
0.68 0.09 0.23
Matches are distributed among these distances:
2 20 0.15
3 84 0.63
4 28 0.21
5 2 0.01
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:96175740 original size:3 final size:3
Alignment explanation
Indices: 96175732--96175761 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
96175722 CTAATATATG
*
96175732 ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
96175762 TTGAAATACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:96175916 original size:147 final size:147
Alignment explanation
Indices: 96175437--96175898 Score: 754
Period size: 147 Copynumber: 3.1 Consensus size: 147
96175427 AAATATACAC
* *
96175437 TAATATATAATAATAATAATAATAATAATAAT--AATA-C--AAAAAGCATATATAATATATATA
1 TAATA-ATAATAATAATAATAGTAATAATATTGAAATACCAAAAAAAGCA-A-AT-ATA-ATA-A
96175497 AAAGTATTAAAATAAAGTAATAAAAATAATACTATATATAAATATCTATACATATACATATATAA
60 AAA-TATTAAAATAAAGTAATAAAAATAATACTATATATAAATATCTATACATATACATATATAA
96175562 TAAAAAATATACACTAATATATGA
124 TAAAAAATATACACTAATATATGA
96175586 TAATAATAATAATAATAATAGTAATAATATTGAAATACCAAAAAAAGCAAATATAATAAAAATAT
1 TAATAATAATAATAATAATAGTAATAATATTGAAATACCAAAAAAAGCAAATATAATAAAAATAT
96175651 TAAAATAAAGTAATAAAAATAATACTATATATAAATATCTATACATATACATATATAATAAAAAA
66 TAAAATAAAGTAATAAAAATAATACTATATATAAATATCTATACATATACATATATAATAAAAAA
96175716 TATACACTAATATATGA
131 TATACACTAATATATGA
96175733 TAATAATAATAATAATAATAGTAATAATATTGAAATACCAAAAAAAGCAAATATAATAAAAATAT
1 TAATAATAATAATAATAATAGTAATAATATTGAAATACCAAAAAAAGCAAATATAATAAAAATAT
*
96175798 TAAAATAAAGTAATAAAAAATAATACTATATATAAATATCTATACATATACATATACAATAAAAA
66 TAAAATAAAGTAAT-AAAAATAATACTATATATAAATATCTATACATATACATATATAAT-AAAA
*
96175863 AATATACACTAATATATAA
129 AATATACACTAATATATGA
* *
96175882 TAATAATAGTGATAATA
1 TAATAATAATAATAATA
96175899 TTAATAACAT
Statistics
Matches: 300, Mismatches: 6, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
147 164 0.55
148 72 0.24
149 45 0.15
150 7 0.02
151 3 0.01
152 1 0.00
153 8 0.03
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.31
Consensus pattern (147 bp):
TAATAATAATAATAATAATAGTAATAATATTGAAATACCAAAAAAAGCAAATATAATAAAAATAT
TAAAATAAAGTAATAAAAATAATACTATATATAAATATCTATACATATACATATATAATAAAAAA
TATACACTAATATATGA
Found at i:96176534 original size:5 final size:5
Alignment explanation
Indices: 96176524--96176550 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
96176514 GTTCAAAAAG
96176524 AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AA
96176551 TAGATAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:96178886 original size:93 final size:93
Alignment explanation
Indices: 96178774--96178944 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
96178764 GCCCATAAGT
* *
96178774 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
96178839 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
96178867 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
96178932 CGAGCTCGGATGC
66 CGAGCTCGGATGC
96178945 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:96178941 original size:46 final size:46
Alignment explanation
Indices: 96178766--96178941 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
96178756 TGTAACCCGC
* *
96178766 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
96178812 CCATAAGTGAACTCGGAATCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
96178858 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
96178905 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
96178942 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:96181509 original size:10 final size:10
Alignment explanation
Indices: 96181494--96181542 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
96181484 TTAAATTCTA
96181494 AAAGATAAAT
1 AAAGATAAAT
96181504 AAAGATAAAT
1 AAAGATAAAT
96181514 AAAGA-AAAGT
1 AAAGATAAA-T
*
96181524 AGAGATAAAT
1 AAAGATAAAT
*
96181534 AGAGATAAA
1 AAAGATAAA
96181543 AGCTAAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
9 3 0.08
10 30 0.83
11 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:96186299 original size:36 final size:36
Alignment explanation
Indices: 96186259--96186331 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
96186249 TGCCATTTTT
* *
96186259 AACAGCAACTCGAGGAGGTCTTTTGTTCGAATCTTG
1 AACAGCAACTCGAGCAGGTCTTTTCTTCGAATCTTG
* * *
96186295 AACAGCAACTGGAGCAGGTTTTTTCTTTGAATCTTG
1 AACAGCAACTCGAGCAGGTCTTTTCTTCGAATCTTG
96186331 A
1 A
96186332 GCAATAATAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (36 bp):
AACAGCAACTCGAGCAGGTCTTTTCTTCGAATCTTG
Found at i:96189225 original size:25 final size:25
Alignment explanation
Indices: 96189195--96189245 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
96189185 GAATGAGCCT
*
96189195 TTAAATCAATTTGAATAAAATCAAA
1 TTAAATCAATTGGAATAAAATCAAA
**
96189220 TTAAATTGATTGGAATAAAATCAAA
1 TTAAATCAATTGGAATAAAATCAAA
96189245 T
1 T
96189246 CAAGATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (25 bp):
TTAAATCAATTGGAATAAAATCAAA
Found at i:96191352 original size:30 final size:28
Alignment explanation
Indices: 96191288--96191352 Score: 67
Period size: 30 Copynumber: 2.2 Consensus size: 28
96191278 TTTATATATA
* *
96191288 TTATATAATTTATTTATTTTAAATATTT
1 TTATATAATTTATTTACTTTAAACATTT
* *
96191316 TGTATATTATTTATTTTACTTTAAACCTTAT
1 T-TATATAATTTA-TTTACTTTAAACATT-T
96191347 TTATAT
1 TTATAT
96191353 GTAAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 1 0.03
29 10 0.33
30 17 0.57
31 2 0.07
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (28 bp):
TTATATAATTTATTTACTTTAAACATTT
Found at i:96191395 original size:12 final size:12
Alignment explanation
Indices: 96191378--96191407 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
96191368 ATTTTATTTG
96191378 TATTATTTATTA
1 TATTATTTATTA
96191390 TATTATTTATTA
1 TATTATTTATTA
96191402 TATTAT
1 TATTAT
96191408 GTATAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:96191945 original size:29 final size:30
Alignment explanation
Indices: 96191913--96191972 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
96191903 AATCCTTTTT
96191913 ATATATAT-TATATAATTTA-TTTAATTTAA
1 ATAT-TATGTATATAATTTATTTTAATTTAA
* * *
96191942 ATATTTTGTATATTATTTATTTTACTTTAA
1 ATATTATGTATATAATTTATTTTAATTTAA
96191972 A
1 A
96191973 CCTTATTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 2 0.08
29 14 0.54
30 10 0.38
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (30 bp):
ATATTATGTATATAATTTATTTTAATTTAA
Found at i:96191982 original size:29 final size:28
Alignment explanation
Indices: 96191918--96191983 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
96191908 TTTTTATATA
*
96191918 TATTATATAATTTATTTAATTTAAATAT
1 TATTATATAATTTATTTAATTTAAACAT
* * * *
96191946 TTTGTATATTATTTATTTTACTTTAAACCT
1 TAT-TATATAATTTA-TTTAATTTAAACAT
96191976 TATTATAT
1 TATTATAT
96191984 GTAAAAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 2 0.07
29 15 0.50
30 13 0.43
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (28 bp):
TATTATATAATTTATTTAATTTAAACAT
Found at i:96192026 original size:12 final size:12
Alignment explanation
Indices: 96192009--96192059 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
96191999 ATTTTATTTG
96192009 TATTATTTATTA
1 TATTATTTATTA
96192021 TATTATTTA-TA
1 TATTATTTATTA
* *
96192032 TTTTA-TT-GTA
1 TATTATTTATTA
96192042 TATTATTTATTA
1 TATTATTTATTA
96192054 TATTAT
1 TATTAT
96192060 GTATAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 8 0.24
11 8 0.24
12 17 0.52
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:96192026 original size:21 final size:20
Alignment explanation
Indices: 96191994--96192051 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
96191984 GTAAAAAAAA
* *
96191994 TATTTATTTTATTTGTATTAT
1 TATTTATATTATTTATATT-T
96192015 T-TATTATATTATTTATATTT
1 TAT-TTATATTATTTATATTT
96192035 TATTGTATATTATTTAT
1 TATT-TATATTATTTAT
96192052 TATATTATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 4 0.12
21 28 0.88
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (20 bp):
TATTTATATTATTTATATTT
Found at i:96192046 original size:33 final size:32
Alignment explanation
Indices: 96191998--96192070 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 32
96191988 AAAAAATATT
* *
96191998 TATTTTATTTGTATTATTTATTATATTATTTA
1 TATTTTATTTATATTATTTATTATATTATGTA
96192030 TATTTTATTGTATATTATTTATTATATTATGTA
1 TATTTTATT-TATATTATTTATTATATTATGTA
96192063 TAATTTTA
1 T-ATTTTA
96192071 AAATTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 9 0.24
33 22 0.59
34 6 0.16
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (32 bp):
TATTTTATTTATATTATTTATTATATTATGTA
Found at i:96192050 original size:14 final size:13
Alignment explanation
Indices: 96191994--96192059 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 13
96191984 GTAAAAAAAA
96191994 TATTTATTT-TAT
1 TATTTATTTATAT
* *
96192006 T-TGTATTATTTAT
1 TATTTATT-TATAT
96192019 TATATTATTTATA-
1 TAT-TTATTTATAT
96192032 T-TTTATTGTATAT
1 TATTTATT-TATAT
96192045 TATTTA-TTATAT
1 TATTTATTTATAT
96192057 TAT
1 TAT
96192060 GTATAATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
11 10 0.23
12 15 0.34
13 7 0.16
14 8 0.18
15 4 0.09
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (13 bp):
TATTTATTTATAT
Found at i:96192123 original size:15 final size:15
Alignment explanation
Indices: 96192084--96192124 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
96192074 TTTTAAAATT
96192084 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
96192099 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
96192112 ATTATTAAATATT
1 ATTATTAAATATT
96192125 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:96192463 original size:18 final size:18
Alignment explanation
Indices: 96192440--96192474 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
96192430 ATCTCATAAA
96192440 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
96192458 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
96192475 ATATTTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:96193562 original size:15 final size:15
Alignment explanation
Indices: 96193542--96193572 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
96193532 AACAATTGGT
96193542 ACTTAAATATTGAAA
1 ACTTAAATATTGAAA
96193557 ACTTAAATATTGAAA
1 ACTTAAATATTGAAA
96193572 A
1 A
96193573 TGACATATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (15 bp):
ACTTAAATATTGAAA
Found at i:96193907 original size:25 final size:25
Alignment explanation
Indices: 96193850--96193899 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
96193840 TTCCAGGAGA
96193850 AAAATTTTGATTTGTAACGGTTATT
1 AAAATTTTGATTTGTAACGGTTATT
96193875 AAAATTTTGATTTGTAACGGTTATT
1 AAAATTTTGATTTGTAACGGTTATT
96193900 CTCGTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (25 bp):
AAAATTTTGATTTGTAACGGTTATT
Found at i:96196076 original size:35 final size:36
Alignment explanation
Indices: 96195999--96196077 Score: 106
Period size: 35 Copynumber: 2.2 Consensus size: 36
96195989 CGCCAGTTTT
* *
96195999 AACAGCAACTCGAGCAGGTCTTTTGTTCGAATCTTG
1 AACAACAACTCGAGCAGGTCTTTTATTCGAATCTTG
* *
96196035 AACAACAACTGGAGCAGGT-TTTTATTTGAATCTTG
1 AACAACAACTCGAGCAGGTCTTTTATTCGAATCTTG
*
96196070 AGCAACAA
1 AACAACAA
96196078 TACAAACCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
35 21 0.55
36 17 0.45
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (36 bp):
AACAACAACTCGAGCAGGTCTTTTATTCGAATCTTG
Found at i:96200270 original size:10 final size:10
Alignment explanation
Indices: 96200255--96200286 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
96200245 TAATTTATGG
96200255 TACAAATTGA
1 TACAAATTGA
96200265 TACAAATTGA
1 TACAAATTGA
96200275 TACAAATTGA
1 TACAAATTGA
96200285 TA
1 TA
96200287 ATGGGTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.31
Consensus pattern (10 bp):
TACAAATTGA
Found at i:96201825 original size:26 final size:25
Alignment explanation
Indices: 96201800--96201848 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
96201790 ACTGTTATAC
96201800 CCCTAGGTGCAAAATT-ACCTAAATA
1 CCCTAGG-GCAAAATTGACCTAAATA
**
96201825 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGCAAAATTGACCTAAAT
96201849 GCATGACGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
CCCTAGGGCAAAATTGACCTAAATA
Found at i:96205625 original size:19 final size:20
Alignment explanation
Indices: 96205601--96205660 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 20
96205591 TACTACATTA
* *
96205601 TATATATATTT-TTATGTTG
1 TATATATATTTCTAATATTG
96205620 TATATATATTTCTAATATTG
1 TATATATATTTCTAATATTG
96205640 TATATTAAATATTTCTAATAT
1 TATA-T--ATATTTCTAATAT
96205661 CCTTATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.31
20 10 0.29
21 1 0.03
23 13 0.37
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (20 bp):
TATATATATTTCTAATATTG
Found at i:96206009 original size:18 final size:18
Alignment explanation
Indices: 96205970--96206102 Score: 193
Period size: 18 Copynumber: 7.5 Consensus size: 18
96205960 AATGATATGT
96205970 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
96205987 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
96206005 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
96206022 AATCTTAGATATGATTGA-
1 AATCTTAGATATGATT-AC
96206040 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
96206057 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
96206075 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
96206094 AATCTTAGA
1 AATCTTAGA
96206103 AGATATGATT
Statistics
Matches: 104, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
16 1 0.01
17 44 0.42
18 47 0.45
19 12 0.12
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:96206010 original size:35 final size:35
Alignment explanation
Indices: 96205961--96206102 Score: 230
Period size: 35 Copynumber: 4.0 Consensus size: 35
96205951 ATAATCTTCA
* *
96205961 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
96205997 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
96206032 ATGATTGAAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
96206067 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
96206103 AGATATGATT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 82 0.82
36 5 0.05
37 13 0.13
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:96206384 original size:16 final size:16
Alignment explanation
Indices: 96206363--96206394 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
96206353 CAACCCTTTT
96206363 TTATTTTAATTTCTTC
1 TTATTTTAATTTCTTC
96206379 TTATTTTAATTTCTTC
1 TTATTTTAATTTCTTC
96206395 ATTTTTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATTTTAATTTCTTC
Found at i:96206637 original size:15 final size:14
Alignment explanation
Indices: 96206594--96206645 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
96206584 TTTCTAAACC
*
96206594 AATATATTTTATAT
1 AATATATTTTTTAT
96206608 AAT-TATTATTCTTAT
1 AATATATT-TT-TTAT
96206623 AAATATATTTTTTAT
1 -AATATATTTTTTAT
*
96206638 TATATATT
1 AATATATT
96206646 ATATTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 4 0.12
14 12 0.38
15 7 0.22
16 5 0.16
17 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
AATATATTTTTTAT
Found at i:96206677 original size:26 final size:26
Alignment explanation
Indices: 96206629--96206678 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
96206619 TTATAAATAT
* * * *
96206629 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
96206655 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
96206679 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:96213600 original size:119 final size:119
Alignment explanation
Indices: 96213441--96214141 Score: 1184
Period size: 119 Copynumber: 6.0 Consensus size: 119
96213431 AGATATAGAT
*
96213441 CAGATCTAACCTTCATATG-TTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
*
96213505 AAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAATATAG
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
*
96213559 CAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
96213624 AAGGAACAAATCGAGGACATAG-AGATTTGACTCTCAGACGTTCTCAAA-ATAG
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
96213676 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
*
96213741 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTTTCAAATATAG
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
* *
96213795 CAGATCTAACCTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
* * *
96213860 AAGGAACAAATCAAGGACATGGCAGATTTGACTCTCAGACGTTCTCAAATATAA
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
* *
96213914 CAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
96213979 AA-GAACAAATCGAGGACATA-CAGATTTGACTCTCAGACGTTCT-AAATATAG
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
* * *
96214030 CAGATCTAA-CTTCAGATG-TTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
* * * *
96214093 AAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
96214142 CAGACTCAAG
Statistics
Matches: 553, Mismatches: 24, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
114 42 0.08
115 26 0.05
116 36 0.07
117 116 0.21
118 85 0.15
119 248 0.45
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
Found at i:96213879 original size:236 final size:238
Alignment explanation
Indices: 96213441--96214141 Score: 1184
Period size: 236 Copynumber: 3.0 Consensus size: 238
96213431 AGATATAGAT
*
96213441 CAGATCTAACCTTCATATG-TTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
*
96213505 AAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACC
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACC
*
96213570 TTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
131 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
*
96213635 CGAGGACATAG-AGATTTGACTCTCAGACGTTCTCAAA-ATAG
196 CGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
96213676 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
*
96213741 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTTTCAAATATAGCAGATCTAACC
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACC
* *
96213806 TTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAAT
131 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
* *
96213871 CAAGGACATGGCAGATTTGACTCTCAGACGTTCTCAAATATAA
196 CGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
* *
96213914 CAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
96213979 AA-GAACAAATCGAGGACATA-CAGATTTGACTCTCAGACGTTCT-AAATATAGCAGATCTAA-C
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACC
* * *
96214040 TTCAGATG-TTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAT
131 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
* * * *
96214104 CGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
196 CGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
96214142 CAGACTCAAG
Statistics
Matches: 441, Mismatches: 22, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
233 85 0.19
234 8 0.02
235 35 0.08
236 201 0.46
237 44 0.10
238 68 0.15
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (238 bp):
CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACC
TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
CGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
Found at i:96214204 original size:83 final size:83
Alignment explanation
Indices: 96214065--96214417 Score: 607
Period size: 83 Copynumber: 4.2 Consensus size: 83
96214055 GAAGCAGATC
96214065 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
96214130 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
96214148 CAAGATGGTTTGGCATCCTTGTGCTTACAAGTAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
96214213 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
** * *
96214231 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCCTGTAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
96214296 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
96214314 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
96214379 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
96214398 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
96214418 ACAAATCGAA
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 179 0.70
84 77 0.30
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:96214828 original size:18 final size:17
Alignment explanation
Indices: 96214805--96214938 Score: 178
Period size: 18 Copynumber: 7.5 Consensus size: 17
96214795 AATGATATGT
96214805 AATCTTTAGATATGATAC
1 AATC-TTAGATATGATAC
* *
96214823 AATCTTAAATATGATTGC
1 AATCTTAGATATGA-TAC
96214841 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
96214858 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
96214876 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
96214893 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
96214911 AATCTTAGATATGATATAC
1 AATCTTAGATATG--ATAC
96214930 AATCTTAGA
1 AATCTTAGA
96214939 AGATATGATT
Statistics
Matches: 103, Mismatches: 8, Indels: 9
0.86 0.07 0.08
Matches are distributed among these distances:
17 41 0.40
18 50 0.49
19 11 0.11
20 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:96214850 original size:35 final size:35
Alignment explanation
Indices: 96214796--96214938 Score: 232
Period size: 35 Copynumber: 4.0 Consensus size: 35
96214786 ATAATATTCA
* *
96214796 ATGATATGTAATCTTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATC-TTAGATATGATACAATCTTAGAT
96214833 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
96214868 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
96214903 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
96214939 AGATATGATT
Statistics
Matches: 102, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
35 78 0.76
36 6 0.06
37 18 0.18
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:96215218 original size:15 final size:15
Alignment explanation
Indices: 96215198--96215227 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
96215188 TCAACCTTTT
96215198 TTATTTAATTTCTTC
1 TTATTTAATTTCTTC
96215213 TTATTTAATTTCTTC
1 TTATTTAATTTCTTC
96215228 ATTTTTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATTTAATTTCTTC
Found at i:96215483 original size:27 final size:29
Alignment explanation
Indices: 96215398--96215477 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
96215388 TACATATTTG
* * *
96215398 ATATTTTATACATTATTTTTC-TAAACCAAT
1 ATATTTTATATATTATTATTCTTATA--AAT
96215428 ATATTTTATATATTATTATTCTTATAAAT
1 ATATTTTATATATTATTATTCTTATAAAT
*
96215457 ATATTTTTTATATATATTATT
1 ATATTTTATATAT-TATTATT
96215478 TTAAATTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
29 15 0.34
30 26 0.59
31 3 0.07
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (29 bp):
ATATTTTATATATTATTATTCTTATAAAT
Found at i:96215489 original size:14 final size:14
Alignment explanation
Indices: 96215429--96215491 Score: 56
Period size: 14 Copynumber: 4.3 Consensus size: 14
96215419 TAAACCAATA
*
96215429 TATTTTATATATTAT
1 TATTTTAAATA-TAT
96215444 TATTCTTATAAATATAT
1 TA-T-TT-TAAATATAT
*
96215461 T-TTTTATATATAT
1 TATTTTAAATATAT
*
96215474 TATTTTAAATTTAT
1 TATTTTAAATATAT
96215488 TATT
1 TATT
96215492 AAATATCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
13 9 0.22
14 16 0.40
15 3 0.08
16 1 0.03
17 6 0.15
18 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTTTAAATATAT
Found at i:96216868 original size:16 final size:18
Alignment explanation
Indices: 96216836--96216868 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
96216826 TTATTCCTAC
96216836 TATATTTATTATTATTAG
1 TATATTTATTATTATTAG
96216854 TATA-TTATT-TTATTA
1 TATATTTATTATTATTA
96216869 TTCTTGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 5 0.33
18 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TATATTTATTATTATTAG
Found at i:96216868 original size:22 final size:22
Alignment explanation
Indices: 96216840--96216888 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
96216830 TCCTACTATA
*
96216840 TTTATTATTATTAGTATA-TTAT
1 TTTATTATTATT-GTATACATAT
*
96216862 TTTATTATTCTTGTATACATAT
1 TTTATTATTATTGTATACATAT
96216884 TTTAT
1 TTTAT
96216889 ATATAGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (22 bp):
TTTATTATTATTGTATACATAT
Found at i:96229525 original size:73 final size:73
Alignment explanation
Indices: 96229405--96229960 Score: 446
Period size: 76 Copynumber: 7.2 Consensus size: 73
96229395 CTGATGTTTG
96229405 AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
96229470 GGTATTTTC
65 GGTATTTTC
*
96229479 AATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
96229544 GTATTTTC
66 GTATTTTC
** * * * * * * *
96229552 AATTTCTGTTTTTCAATTTATGTTTTTCAAAAATCA-ATT-C-ATA-TTG-CTAGAG-GTAAGTT
1 AATTTCTGTTTTTCAA---A----AATC--AACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--
* * **
96229611 GA-ACGTTG-GGTCACATGCC
55 GACACGCTGAGGT-A-TTTTC
96229630 GAGGTATTTTCAAT-TAATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 -A---A-TTTC--TGT--T-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
96229694 ACACACGCTGAGGTATTTTC
56 --ACACGCTGAGGTATTTTC
* * * * *
96229714 AATTCCTGTTTTCTAAAAAAAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGGCA
1 AATTTCTGTTTT-T-----CAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
96229779 CGCCGAGGTATTTTC
59 CGCTGAGGTATTTTC
* * * * *
96229794 AATTTTTGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCCG
1 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
96229859 AGGTATTTTC
64 AGGTATTTTC
* * *
96229869 AATTTCTGCTTTTCAAAAAAAATCAACTCATATTGCGGGAGGTGAGTTCAGCCTCAGGACACGCT
1 AATTTCTGTTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
96229934 GAGGTATTTTC
63 GAGGTATTTTC
*
96229945 AATTTCTATTTTTCAA
1 AATTTCTGTTTTTCAA
96229961 TTTATATTTT
Statistics
Matches: 387, Mismatches: 51, Indels: 89
0.73 0.10 0.17
Matches are distributed among these distances:
73 76 0.20
74 13 0.03
75 64 0.17
76 82 0.21
77 11 0.03
78 12 0.03
79 10 0.03
80 32 0.08
81 10 0.03
82 43 0.11
83 9 0.02
84 8 0.02
85 7 0.02
86 4 0.01
87 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (73 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTATTTTC
Found at i:96229566 original size:14 final size:14
Alignment explanation
Indices: 96229547--96229581 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
96229537 CGCTGAGGTA
*
96229547 TTTTCAATTTCTGT
1 TTTTCAATTTATGT
96229561 TTTTCAATTTATGT
1 TTTTCAATTTATGT
96229575 TTTTCAA
1 TTTTCAA
96229582 AAATCAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.20, C:0.11, G:0.06, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:96229654 original size:87 final size:86
Alignment explanation
Indices: 96229474--96229651 Score: 212
Period size: 87 Copynumber: 2.0 Consensus size: 86
96229464 CGCTGAGGTA
* * *
96229474 TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTCAGGACACG
* **
96229539 CTGAGGTATTTTCAATTTCTG
66 CCGAGGTATTTTCAATTAATG
* * * * **
96229560 TTTTTCAATTTATGTTTTTCAAAAATCAATTCATATTGCTAGAGGTAAGTTGAACGTTGGGTCAC
1 -TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTCAGG--AC
*
96229625 ATGCCGAGGTATTTTCAATTAATG
63 ACGCCGAGGTATTTTCAATTAATG
96229649 TTT
1 TTT
96229652 CAAAAATCAA
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 51 0.67
88 3 0.04
89 22 0.29
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.40
Consensus pattern (86 bp):
TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTCAGGACACG
CCGAGGTATTTTCAATTAATG
Found at i:96229684 original size:160 final size:157
Alignment explanation
Indices: 96229405--96229949 Score: 549
Period size: 160 Copynumber: 3.5 Consensus size: 157
96229395 CTGATGTTTG
* * *
96229405 AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-GCTG
1 AATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGGCACAGCCG
*
96229469 AGGTATTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
64 AGGTATTTTCAA-TT-TATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
96229534 ACACGCTGAGGTATTTTCAATTTCTGTTTTTC
127 ACACGCTGAGGTATTTTCAATTTCTG-TTTTC
* * * * * *
96229566 AATTTATGTTTTTCAAAAATCAATTCATATTGCTAGAGGTAAGTTGAACGTTGGGTCACATGCCG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGG-CACA-GCCG
*
96229631 AGGTATTTTCAATTAATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
64 AGGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
*
96229696 ACACGCTGAGGTATTTTCAATTCCTGTTTTC
127 ACACGCTGAGGTATTTTCAATTTCTGTTTTC
*** * *
96229727 TAA---A-----AAAAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGGCAC-GCC
1 -AATTTATGTTTTTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGGCACAGCC
* * *
96229783 GAGGTATTTTCAATTTTTGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTT
63 GAGGTATTTTCAATTTATG--TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
96229848 AGGACACGCCGAGGTATTTTCAATTTCTGCTTTTC
124 AGGACACGCTGAGGTATTTTCAATTTCTG-TTTTC
* * * *
96229883 AA---A--------AAAAATCAACTCATATTGCGGGAGGTGAGTTCAGCCTCAGGACAC-GCTGA
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGGCACAGCCGA
96229936 GGTATTTTCAATTT
65 GGTATTTTCAATTT
96229950 CTATTTTTCA
Statistics
Matches: 336, Mismatches: 35, Indels: 36
0.83 0.09 0.09
Matches are distributed among these distances:
151 53 0.16
152 5 0.01
153 20 0.06
154 5 0.01
155 59 0.18
156 8 0.02
157 39 0.12
159 3 0.01
160 82 0.24
161 20 0.06
162 42 0.12
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (157 bp):
AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGCACAGCCGAG
GTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTTCAATTTCTGTTTTC
Found at i:96229844 original size:75 final size:74
Alignment explanation
Indices: 96229561--96229949 Score: 419
Period size: 75 Copynumber: 5.1 Consensus size: 74
96229551 CAATTTCTGT
* * * * * **
96229561 TTTTCAATTTATGTTTTTC--AAAAATCAATTCATATTGCTAGAGGTAAGTTGAACGTTGGGTCA
1 TTTTCAATTTATG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
*
96229624 CATGCCGAGGTA
63 CACGCCGAGGTA
*
96229636 TTTTCAATTAATG-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
*
96229698 ACGCTGAGGTA
64 ACGCCGAGGTA
** * *
96229709 TTTTCAATTCCTGTTTTCTAAAAAAAAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCA
1 TTTTCAATTTATGTTTTC-----AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
96229774 GGGCACGCCGAGGTA
60 GGACACGCCGAGGTA
* * *
96229789 TTTTCAATTTTTGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACA
1 TTTTCAATTTATG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
96229854 CGCCGAGGTA
65 CGCCGAGGTA
* * *
96229864 TTTTCAATTTCTGCTTTTCAAAAAAAATCAACTCATATTGCGGGAGGTGAGTTCAGCCTCAGGAC
1 TTTTCAATTTATG-TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
96229929 ACGCTGAGGTA
64 ACGCCGAGGTA
96229940 TTTTCAATTT
1 TTTTCAATTT
96229950 CTATTTTTCA
Statistics
Matches: 273, Mismatches: 30, Indels: 21
0.84 0.09 0.06
Matches are distributed among these distances:
73 61 0.22
74 4 0.01
75 74 0.27
76 68 0.25
80 22 0.08
81 10 0.04
82 34 0.12
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (74 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCCGAGGTA
Found at i:96229928 original size:76 final size:76
Alignment explanation
Indices: 96229580--96230050 Score: 434
Period size: 76 Copynumber: 6.0 Consensus size: 76
96229570 TATGTTTTTC
* * * * * ** *
96229580 AAAAATCAATTCATATTGCTAGAGGTAAGTTGAACGTTGGGTCACATGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCCGAGGTATTTTCAATT
**
96229645 AATG--TTTC---
64 TCTGCTTTTCAAA
*
96229653 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCCGAGGTATTTTCAATT
*
96229718 CCTG-TTTTCTAAAAAA
64 TCTGCTTTTC----AAA
* * *
96229734 AAAAAGTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGGCACGCCGAGGTATTTTCAATTT
1 AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTT
*
96229799 TTGCTTTTC-AA
65 CTGCTTTTCAAA
* *
96229810 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCCGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTC
96229875 TGCTTTTCAAA
66 TGCTTTTCAAA
* * *
96229886 AAAAATCAACTCATATTGCGGGAGGTGAGTTCAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTC
**
96229951 TATTTTTCAATTTATA
66 TGCTTTTC-A---A-A
* * * *
96229967 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTGTTT
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCCGAGGTATTT
**
96230032 TCAAAATCTGCTTTTCAAA
58 TCAATTTCTGCTTTTCAAA
96230051 TTAAGTTTAA
Statistics
Matches: 332, Mismatches: 42, Indels: 37
0.81 0.10 0.09
Matches are distributed among these distances:
73 57 0.17
74 4 0.01
75 62 0.19
76 75 0.23
77 1 0.00
80 23 0.07
81 11 0.03
82 34 0.10
84 1 0.00
85 1 0.00
87 38 0.11
88 1 0.00
89 24 0.07
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (76 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTC
TGCTTTTCAAA
Found at i:96229958 original size:151 final size:152
Alignment explanation
Indices: 96229627--96229960 Score: 439
Period size: 151 Copynumber: 2.2 Consensus size: 152
96229617 TGGGTCACAT
* *
96229627 GCCGAGGTATTTTCAA-TTAATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 GCCGAGGTATTTTCAATTTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
96229689 TCAGGACACACGCTGAGGTATTTTCAATTCCTGTTTTCTAAAAAAAAAAAGTCAACTCGTATTGC
66 TCAGGA-ACACGCCGAGGTATTTTCAATTCCTGTTTTC---AAAAAAAAAGTCAACTCATATTGC
* *
96229754 GAGAGGCGAGTTGAGCCTCAGGGCAC
127 GAGAGGCGAGTTCAGCCTCAGGACAC
*
96229780 GCCGAGGTATTTTCAATTTT-TGCTTTTCAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAG
1 GCCGAGGTATTTTCAATTTTAT--TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
96229844 CCTTAGG-ACACGCCGAGGTATTTTCAATTTCTGCTTTTC-AAAAAAAA-TCAACTCATATTGCG
64 CCTCAGGAACACGCCGAGGTATTTTCAATTCCTG-TTTTCAAAAAAAAAGTCAACTCATATTGCG
* *
96229906 GGAGGTGAGTTCAGCCTCAGGACAC
128 AGAGGCGAGTTCAGCCTCAGGACAC
*
96229931 GCTGAGGTATTTTCAATTTCTATTTTTCAA
1 GCCGAGGTATTTTCAATTT-TATTTTTCAA
96229961 TTTATATTTT
Statistics
Matches: 161, Mismatches: 12, Indels: 18
0.84 0.06 0.09
Matches are distributed among these distances:
151 60 0.37
152 9 0.06
153 18 0.11
154 2 0.01
155 28 0.17
156 5 0.03
157 39 0.24
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (152 bp):
GCCGAGGTATTTTCAATTTTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAGGAACACGCCGAGGTATTTTCAATTCCTGTTTTCAAAAAAAAAGTCAACTCATATTGCGAGA
GGCGAGTTCAGCCTCAGGACAC
Found at i:96229959 original size:14 final size:14
Alignment explanation
Indices: 96229940--96229974 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
96229930 CGCTGAGGTA
*
96229940 TTTTCAATTTCTAT
1 TTTTCAATTTATAT
96229954 TTTTCAATTTATAT
1 TTTTCAATTTATAT
96229968 TTTTCAA
1 TTTTCAA
96229975 AAATCAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:96230064 original size:87 final size:88
Alignment explanation
Indices: 96229884--96230098 Score: 222
Period size: 87 Copynumber: 2.4 Consensus size: 88
96229874 CTGCTTTTCA
* * **
96229884 AAAAAAATCAACTCATATTGCGGGAGGTGAGTTCAGCCTCAGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAA
* *
96229949 TCTATTTTTCAATTTATAT-TTT
66 TCTACTTTTCAAATTATATGTTT
** * * *
96229971 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTGTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCA
*
96230035 AAATCTGCTTTTCAAATTA-A-GTTT
63 AAATCTACTTTTCAAATTATATGTTT
* *
96230059 AAAAAAAAAAACAACTCATATTGTGAGAGGTGAGTTGAGC
1 ---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
96230099 ATTGGCTCAC
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
87 38 0.36
88 5 0.05
89 29 0.28
91 33 0.31
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (88 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAA
TCTACTTTTCAAATTATATGTTT
Found at i:96231275 original size:23 final size:22
Alignment explanation
Indices: 96231228--96231275 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
96231218 TGTATAGATG
* *
96231228 AATAAAAGGAAAATAAAAAATA
1 AATAAAAGCAAAATAAAAAAGA
96231250 AATAAATAGCAAAA-AAAAGAAGA
1 AATAAA-AGCAAAATAAAA-AAGA
96231273 AAT
1 AAT
96231276 TACCTTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.12
Consensus pattern (22 bp):
AATAAAAGCAAAATAAAAAAGA
Found at i:96232187 original size:16 final size:16
Alignment explanation
Indices: 96232166--96232196 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
96232156 TTAAATGATA
96232166 TTAGTACATATATATT
1 TTAGTACATATATATT
96232182 TTAGTACATATATAT
1 TTAGTACATATATAT
96232197 GTATACTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
TTAGTACATATATATT
Found at i:96232528 original size:19 final size:20
Alignment explanation
Indices: 96232504--96232563 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 20
96232494 AATACTACAT
* *
96232504 TATATATATTT-TTATGTTG
1 TATATATATTTCTAATATTG
96232523 TATATATATTTCTAATATTG
1 TATATATATTTCTAATATTG
96232543 TATATTAAGTATTTCTAATAT
1 TATA-T-A-TATTTCTAATAT
96232564 CCTTATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.31
20 10 0.29
21 1 0.03
22 1 0.03
23 12 0.34
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (20 bp):
TATATATATTTCTAATATTG
Found at i:96232906 original size:20 final size:19
Alignment explanation
Indices: 96232855--96232906 Score: 50
Period size: 22 Copynumber: 2.5 Consensus size: 19
96232845 TTTATTATTA
*
96232855 ATATTAGTATATATATTTT
1 ATATTAGTATACATATTTT
*
96232874 ATTATTCTTGTATACATATTTT
1 A-TA-T-TAGTATACATATTTT
96232896 ATATATAGTAT
1 ATAT-TAGTAT
96232907 TATTTTCGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 1 0.04
20 8 0.31
21 3 0.12
22 14 0.54
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
ATATTAGTATACATATTTT
Found at i:96233098 original size:21 final size:22
Alignment explanation
Indices: 96233074--96233149 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 22
96233064 ATTCTTATTA
96233074 TTATTAATATTA-GTATATGTT
1 TTATTAATATTAGGTATATGTT
* *
96233095 TTATT-AT-TTATGTATATATCT
1 TTATTAATATTAGGTATATGT-T
*
96233116 TTAATACATA-TAGGTATATG-T
1 TTATTA-ATATTAGGTATATGTT
96233137 TTATGTAATATTA
1 TTAT-TAATATTA
96233150 TTAATAAGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
19 3 0.07
20 9 0.21
21 17 0.40
22 4 0.09
23 10 0.23
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.54
Consensus pattern (22 bp):
TTATTAATATTAGGTATATGTT
Found at i:96233192 original size:40 final size:41
Alignment explanation
Indices: 96233139--96233217 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
96233129 GTATATGTTT
*
96233139 ATGTAATATTATTA-ATAAGTGTTTTCAACATTATTATTATGC
1 ATGTAATATTATTATATAAATGTTTT-AACATTA-TATTATGC
*
96233181 ATGT-ATA-TATTATGTAAATGTTTTAACATTATATTAT
1 ATGTAATATTATTATATAAATGTTTTAACATTATATTAT
96233218 ATATGTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
39 6 0.18
40 12 0.35
41 12 0.35
42 4 0.12
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (41 bp):
ATGTAATATTATTATATAAATGTTTTAACATTATATTATGC
Found at i:96234264 original size:15 final size:15
Alignment explanation
Indices: 96234244--96234274 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
96234234 GACAGTTGCT
96234244 ACTTAAATATCGAAA
1 ACTTAAATATCGAAA
*
96234259 ACTTAAATATTGAAA
1 ACTTAAATATCGAAA
96234274 A
1 A
96234275 TGACATATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (15 bp):
ACTTAAATATCGAAA
Found at i:96247361 original size:36 final size:33
Alignment explanation
Indices: 96247287--96247363 Score: 84
Period size: 36 Copynumber: 2.2 Consensus size: 33
96247277 TTAGTGAAAC
96247287 TTTTAAAAATTTGTTAAGAATATTTTAATAAAT
1 TTTTAAAAATTTGTTAAGAATATTTTAATAAAT
* **
96247320 ATTTAAAACGATTTGGTTAA-AATATGTTTAATTTAT
1 TTTTAAAA--ATTT-GTTAAGAATAT-TTTAATAAAT
96247356 TTTTAAAA
1 TTTTAAAA
96247364 TAGTATTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
33 7 0.19
35 9 0.25
36 20 0.56
ACGTcount: A:0.43, C:0.01, G:0.08, T:0.48
Consensus pattern (33 bp):
TTTTAAAAATTTGTTAAGAATATTTTAATAAAT
Found at i:96264684 original size:36 final size:36
Alignment explanation
Indices: 96264637--96264711 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
96264627 ATGGCTTACT
*
96264637 TTACATTCATTACACCTTAACTTTTACTTTATTAAC
1 TTACATTCATTACACCTTAACTTATACTTTATTAAC
*
96264673 TTACATTCATTACACCTTAGCTTATACTTTATTAAC
1 TTACATTCATTACACCTTAACTTATACTTTATTAAC
96264709 TTA
1 TTA
96264712 TACATGCCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.21, G:0.01, T:0.47
Consensus pattern (36 bp):
TTACATTCATTACACCTTAACTTATACTTTATTAAC
Found at i:96273432 original size:29 final size:28
Alignment explanation
Indices: 96273400--96273468 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
96273390 TTTTCCTAGA
96273400 TTATATATATTTTCAAAATTTTTATATAT
1 TTATATATATTTTCAAAATTTTTA-ATAT
* * * *
96273429 TTAT-TTTATTTTTTATAATTTTTAATGT
1 TTATATATA-TTTTCAAAATTTTTAATAT
*
96273457 TTATATACATTT
1 TTATATATATTT
96273469 GGTAAAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
28 13 0.41
29 19 0.59
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (28 bp):
TTATATATATTTTCAAAATTTTTAATAT
Found at i:96274491 original size:86 final size:84
Alignment explanation
Indices: 96274330--96274495 Score: 215
Period size: 84 Copynumber: 2.0 Consensus size: 84
96274320 GATGCTCTGG
* * * ** * *
96274330 TTCTTGTTATGGTTGATTAACTACCATCGATCACAACTTGGTTGTAATTCTTTCAAACCCTTTTA
1 TTCTTGTTAAGGTTCATTAACTACCATCGACCACAAAGTGGTTATAACTCTTTCAAACCCTTTTA
96274395 AAAAGGTAAGTAGCATCTA
66 AAAAGGTAAGTAGCATCTA
* * *
96274414 TTCTTGTTAAGGTTCATTAGCTACCATTGACCACAAAGTGGTTATATAACTCTTTCAATCCCTTT
1 TTCTTGTTAAGGTTCATTAACTACCATCGACCACAAAGTGG-T-TATAACTCTTTCAAACCCTTT
*
96274479 TAAAAAGTTAAGTAGCA
64 TAAAAAGGTAAGTAGCA
96274496 CCGATCTTCC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
84 34 0.49
85 1 0.01
86 34 0.49
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (84 bp):
TTCTTGTTAAGGTTCATTAACTACCATCGACCACAAAGTGGTTATAACTCTTTCAAACCCTTTTA
AAAAGGTAAGTAGCATCTA
Found at i:96274951 original size:22 final size:22
Alignment explanation
Indices: 96274921--96274969 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
96274911 TTGGAAGAGG
*
96274921 TGCATGAGACACATGCACACTC
1 TGCACGAGACACATGCACACTC
*
96274943 TGCACGAGACACATGCACACTG
1 TGCACGAGACACATGCACACTC
96274965 TGCAC
1 TGCAC
96274970 AAAATTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.31, C:0.33, G:0.20, T:0.16
Consensus pattern (22 bp):
TGCACGAGACACATGCACACTC
Found at i:96277970 original size:43 final size:43
Alignment explanation
Indices: 96277901--96278048 Score: 138
Period size: 43 Copynumber: 3.4 Consensus size: 43
96277891 TCTCATATAT
* * * * * *
96277901 GGTCTTACATGATATCACATATCGATGTCACTGTTCTAGACAG
1 GGTCTTACACGAAATCACATAACGATGCCAATGTCCTAGACAG
*
96277944 GGTCTTACACGAAATCA-ATTAACGATGCCAATGTCCTAGACAT
1 GGTCTTACACGAAATCACA-TAACGATGCCAATGTCCTAGACAG
* * * * *
96277987 GGTCTTACACGTAATCTCA-ATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCACATA-ACGATGCCAATGTCCTAGACAG
* *
96278030 GGTCTTACATGTAATCACA
1 GGTCTTACACGAAATCACA
96278049 ATTCGATAAC
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
42 2 0.02
43 86 0.97
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGAAATCACATAACGATGCCAATGTCCTAGACAG
Found at i:96283382 original size:24 final size:23
Alignment explanation
Indices: 96283355--96283401 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
96283345 TCATTCGGCC
*
96283355 ATGTTTC-AATTCCAGAAACTCTTT
1 ATGTTTCTAA-TCAAGAAA-TCTTT
96283379 ATGTTTCTAATCAAGAAATCTTT
1 ATGTTTCTAATCAAGAAATCTTT
96283402 GACTTATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 14 0.67
25 2 0.10
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.43
Consensus pattern (23 bp):
ATGTTTCTAATCAAGAAATCTTT
Found at i:96285652 original size:43 final size:42
Alignment explanation
Indices: 96285603--96285748 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 42
96285593 CTCATATATA
*
96285603 GTCTTACATGTTATCACATATCGATGCCATTGTCCCAGACAAG
1 GTCTTACATGTAATCACATATCGATGCCA-TGTCCCAGACAAG
* * **
96285646 GTCTTACATGAAATCAAATAAT-GATGCCAAATCCCAGACATA-
1 GTCTTACATGTAATCACAT-ATCGATGCCATGTCCCAGACA-AG
* * * * *
96285688 GTCTTACACGTAATCTCA-ATACAATACCAATGTCCCAGACATG
1 GTCTTACATGTAATCACATAT-CGATGCC-ATGTCCCAGACAAG
96285731 GTCTTACATGTAATCACA
1 GTCTTACATGTAATCACA
96285749 ATTCAATAAC
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
40 2 0.02
42 27 0.33
43 50 0.62
44 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (42 bp):
GTCTTACATGTAATCACATATCGATGCCATGTCCCAGACAAG
Found at i:96286752 original size:24 final size:24
Alignment explanation
Indices: 96286725--96286772 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
96286715 AAATAGACAC
96286725 CTTTATCATATAGAATGCAACTTT
1 CTTTATCATATAGAATGCAACTTT
96286749 CTTTATCATATAGAATGCAACTTT
1 CTTTATCATATAGAATGCAACTTT
96286773 TGCATCTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (24 bp):
CTTTATCATATAGAATGCAACTTT
Found at i:96287182 original size:40 final size:38
Alignment explanation
Indices: 96287133--96287214 Score: 110
Period size: 40 Copynumber: 2.1 Consensus size: 38
96287123 ACAAATACCG
* *
96287133 CAAATGTTATACATTGGTGGCGTTTTTACTAGAAACGCCA
1 CAAAGGTTATACATTAGTGGCGTTTTT-C-AGAAACGCCA
* *
96287173 CAAAGGTTATGCATTAGTGGCGTTTTTCATAAACGCCA
1 CAAAGGTTATACATTAGTGGCGTTTTTCAGAAACGCCA
96287211 CAAA
1 CAAA
96287215 ATTGCAATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 13 0.34
39 1 0.03
40 24 0.63
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (38 bp):
CAAAGGTTATACATTAGTGGCGTTTTTCAGAAACGCCA
Found at i:96287510 original size:21 final size:21
Alignment explanation
Indices: 96287467--96287513 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
96287457 ATGTTATTGA
* **
96287467 GTTTATGGTATATGGTTTTGG
1 GTTTATGGCATATGGTTAAGG
*
96287488 GTTTATGGCCTATGGTTAAGG
1 GTTTATGGCATATGGTTAAGG
96287509 GTTTA
1 GTTTA
96287514 AGGTTTAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.04, G:0.32, T:0.47
Consensus pattern (21 bp):
GTTTATGGCATATGGTTAAGG
Found at i:96287542 original size:23 final size:22
Alignment explanation
Indices: 96287506--96287579 Score: 78
Period size: 23 Copynumber: 3.2 Consensus size: 22
96287496 CCTATGGTTA
96287506 AGGG-TTTAAGGTTTAAAGTTTT
1 AGGGTTTTAAGGTTTAAAG-TTT
* *
96287528 GGGGTTTTAAAGTTTTAAAGTTT
1 AGGGTTTT-AAGGTTTAAAGTTT
*
96287551 AGGGTTTTAAGGTTTTAAGGTTT
1 AGGGTTTTAAGG-TTTAAAGTTT
96287574 ATGGGT
1 A-GGGT
96287580 GTTACTAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
22 6 0.14
23 23 0.53
24 14 0.33
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (22 bp):
AGGGTTTTAAGGTTTAAAGTTT
Found at i:96287550 original size:16 final size:16
Alignment explanation
Indices: 96287510--96287573 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 16
96287500 TGGTTAAGGG
96287510 TTTAAGG-TTTAAAGT
1 TTTAAGGTTTTAAAGT
**
96287525 TTTGGGGTTTTAAAGT
1 TTTAAGGTTTTAAAGT
* **
96287541 TTTAAAG-TTTAGGGT
1 TTTAAGGTTTTAAAGT
*
96287556 TTTAAGGTTTTAAGGT
1 TTTAAGGTTTTAAAGT
96287572 TT
1 TT
96287574 ATGGGTGTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
15 17 0.45
16 21 0.55
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (16 bp):
TTTAAGGTTTTAAAGT
Found at i:96287551 original size:15 final size:15
Alignment explanation
Indices: 96287510--96287565 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
96287500 TGGTTAAGGG
96287510 TTTAAGGTTTAAAGT
1 TTTAAGGTTTAAAGT
**
96287525 TTTGGGGTTTTAAAGT
1 TTTAAGG-TTTAAAGT
* **
96287541 TTTAAAGTTTAGGGT
1 TTTAAGGTTTAAAGT
96287556 TTTAAGGTTT
1 TTTAAGGTTT
96287566 TAAGGTTTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (15 bp):
TTTAAGGTTTAAAGT
Found at i:96288196 original size:23 final size:23
Alignment explanation
Indices: 96288170--96288213 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
96288160 TAGCGGTGTT
96288170 TATGATACAAATGCCGCAAAAGG
1 TATGATACAAATGCCGCAAAAGG
*
96288193 TATGATACAAATGCCGTAAAA
1 TATGATACAAATGCCGCAAAA
96288214 TATCATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.20
Consensus pattern (23 bp):
TATGATACAAATGCCGCAAAAGG
Found at i:96289543 original size:24 final size:24
Alignment explanation
Indices: 96289516--96289573 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
96289506 AATACTATGT
*
96289516 ATATAATATTTGTAACTAAAATTA
1 ATATTATATTTGTAACTAAAATTA
*
96289540 ATATTATATTTGTATCTAAAATTA
1 ATATTATATTTGTAACTAAAATTA
96289564 ATATTATATT
1 ATATTATATT
96289574 ATAAAATACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (24 bp):
ATATTATATTTGTAACTAAAATTA
Found at i:96291584 original size:13 final size:14
Alignment explanation
Indices: 96291568--96291596 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96291558 TTTTAAACAT
96291568 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
96291581 TTATAATGGTTTAA
1 TTATAATGGTTTAA
96291595 TT
1 TT
96291597 CATCGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:96292281 original size:25 final size:25
Alignment explanation
Indices: 96292253--96292320 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
96292243 TATCATTTAG
96292253 ATTTGCTGTTTTTGGTTGGATTTGT
1 ATTTGCTGTTTTTGGTTGGATTTGT
** *
96292278 ATTTTTTGTTTTTTGTTGGATTTGT
1 ATTTGCTGTTTTTGGTTGGATTTGT
96292303 ATTTGCTGTTTTTGGTTG
1 ATTTGCTGTTTTTGGTTG
96292321 TTACAGGAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.07, C:0.03, G:0.25, T:0.65
Consensus pattern (25 bp):
ATTTGCTGTTTTTGGTTGGATTTGT
Found at i:96292592 original size:43 final size:43
Alignment explanation
Indices: 96292540--96292771 Score: 232
Period size: 43 Copynumber: 5.4 Consensus size: 43
96292530 CCGCTGGAGG
* * * * * *
96292540 TCACGTTCTATAGCGCCATTTGTGGGGAAAGTGCCACAAAAGA
1 TCACATTCTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGA
*
96292583 TCACATTCTATAGCGGCATTTATGGGAAAAGCGCCGCTAAAGA
1 TCACATTCTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGA
* * * *
96292626 TTACATTCTATAGTGGCGTTTGTGGGAAAAGCGTCGCTAAAGA
1 TCACATTCTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGA
* * * * * * * *
96292669 TCGCGTTCTATAGCGGCATTTGCGGCAAAATCACCTCTAAAGG
1 TCACATTCTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGA
* * *
96292712 TCACGTTCTATAGTGGCATTTTTGGGAAAAGCGCCGCTAAATG-
1 TCACATTCTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAA-GA
**
96292755 TCATGTTCTATAGCGGC
1 TCACATTCTATAGCGGC
96292772 GTTTATTTGA
Statistics
Matches: 154, Mismatches: 34, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
43 153 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
TCACATTCTATAGCGGCATTTGTGGGAAAAGCGCCGCTAAAGA
Found at i:96296440 original size:27 final size:27
Alignment explanation
Indices: 96296408--96296492 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
96296398 GGTAAGTGGC
*
96296408 GCCTATTTGACAGGCGCGAGTGGTTGCT
1 GCCTATTTGACAGGCGCGACTGGTTG-T
96296436 -CCTATTTGACAGGCGCGACTGGTTGT
1 GCCTATTTGACAGGCGCGACTGGTTGT
* * * * *
96296462 GCCTGTCTGACAGGTGCGATTGGTTGA
1 GCCTATTTGACAGGCGCGACTGGTTGT
96296489 GCCT
1 GCCT
96296493 GTCAAATAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.02
27 49 0.98
ACGTcount: A:0.14, C:0.22, G:0.34, T:0.29
Consensus pattern (27 bp):
GCCTATTTGACAGGCGCGACTGGTTGT
Found at i:96296507 original size:27 final size:27
Alignment explanation
Indices: 96296444--96296508 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
96296434 CTCCTATTTG
* * **
96296444 ACAGGCGCGACTGGTTGTGCCTGTCTG
1 ACAGGCGCGATTGGTTGAGCCTGTCAA
*
96296471 ACAGGTGCGATTGGTTGAGCCTGTCAA
1 ACAGGCGCGATTGGTTGAGCCTGTCAA
*
96296498 ATAGGCGCGAT
1 ACAGGCGCGAT
96296509 CAGTGGGGCC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.18, C:0.22, G:0.35, T:0.25
Consensus pattern (27 bp):
ACAGGCGCGATTGGTTGAGCCTGTCAA
Found at i:96299003 original size:11 final size:11
Alignment explanation
Indices: 96298987--96299011 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96298977 CCAAATGGCA
96298987 TCTTTCCCATT
1 TCTTTCCCATT
96298998 TCTTTCCCATT
1 TCTTTCCCATT
96299009 TCT
1 TCT
96299012 ATTCTGGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.36, G:0.00, T:0.56
Consensus pattern (11 bp):
TCTTTCCCATT
Found at i:96301147 original size:33 final size:33
Alignment explanation
Indices: 96301105--96301186 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
96301095 TACCTAAAAG
96301105 GTACTACTGGAAAAGGAAACGTACACCTCGAGT
1 GTACTACTGGAAAAGGAAACGTACACCTCGAGT
* *
96301138 GTACTACTGGAAAAGGAAATGTACACCTTGAGT
1 GTACTACTGGAAAAGGAAACGTACACCTCGAGT
*
96301171 GTACCACTGGAAAAGG
1 GTACTACTGGAAAAGG
96301187 GAATATGCAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.20
Consensus pattern (33 bp):
GTACTACTGGAAAAGGAAACGTACACCTCGAGT
Found at i:96302317 original size:18 final size:20
Alignment explanation
Indices: 96302240--96302305 Score: 132
Period size: 20 Copynumber: 3.3 Consensus size: 20
96302230 GAGAACACTA
96302240 GCGTGTTCCAAGCCACACGG
1 GCGTGTTCCAAGCCACACGG
96302260 GCGTGTTCCAAGCCACACGG
1 GCGTGTTCCAAGCCACACGG
96302280 GCGTGTTCCAAGCCACACGG
1 GCGTGTTCCAAGCCACACGG
96302300 GCGTGT
1 GCGTGT
96302306 ACAACTACAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (20 bp):
GCGTGTTCCAAGCCACACGG
Found at i:96305421 original size:46 final size:46
Alignment explanation
Indices: 96305288--96305424 Score: 247
Period size: 46 Copynumber: 3.0 Consensus size: 46
96305278 TTTTTGTCAT
** *
96305288 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
96305334 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
96305380 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
96305425 GAGAGCACAC
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAC
Found at i:96307523 original size:16 final size:16
Alignment explanation
Indices: 96307504--96307542 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
96307494 AATTTTTCCC
*
96307504 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
96307520 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
96307536 TCTTTCC
1 TTTTTCC
96307543 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:96310688 original size:42 final size:42
Alignment explanation
Indices: 96310628--96310710 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
96310618 ATTATAATAG
* *
96310628 GATTACTCATCCGAGCTAAATCCTGTT-TCCAACATATGCTAA
1 GATTACCCATCCGAGCTAAATCCT-TTATACAACATATGCTAA
* * *
96310670 GATTACCCGTCCGGGCTAAATCCTTTATACAGCATATGCTA
1 GATTACCCATCCGAGCTAAATCCTTTATACAACATATGCTA
96310711 GAGAAAGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 2 0.06
42 33 0.94
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
GATTACCCATCCGAGCTAAATCCTTTATACAACATATGCTAA
Found at i:96310765 original size:57 final size:58
Alignment explanation
Indices: 96310671--96310823 Score: 182
Period size: 57 Copynumber: 2.7 Consensus size: 58
96310661 ATATGCTAAG
* * *
96310671 ATTACCCGTCCGGGCTAAATCCTTTATACAGCATATGCTAGAGAAAGATTA-ATCAGA
1 ATTACCCGTCCGGGCTAAATCCTTTATGCAACATATGCTAGAGAAAGATCATATCAGA
* * * ** * *
96310728 ATTACCCGTTCGGGCTAAATCCTTTATGCAACGTATGCTCGAGAGGGCTCATATCAGG
1 ATTACCCGTCCGGGCTAAATCCTTTATGCAACATATGCTAGAGAAAGATCATATCAGA
* * *
96310786 ATTACCCGTCCGGGCTATATCCTATCTGCAACATATGC
1 ATTACCCGTCCGGGCTAAATCCTTTATGCAACATATGC
96310824 AGAATCATAT
Statistics
Matches: 80, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
57 42 0.52
58 38 0.47
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (58 bp):
ATTACCCGTCCGGGCTAAATCCTTTATGCAACATATGCTAGAGAAAGATCATATCAGA
Found at i:96315858 original size:33 final size:33
Alignment explanation
Indices: 96315820--96315935 Score: 133
Period size: 33 Copynumber: 3.5 Consensus size: 33
96315810 AGAAGAGTGG
* * *
96315820 GTATGGCGGTGGATACAGGCCAGGAGGAGTGGA
1 GTATGGCGGTGGATACAGGCCGGGAGAAATGGA
* * *
96315853 GTATGGCAGTGGATACTGGCCGGGAAAAATGGA
1 GTATGGCGGTGGATACAGGCCGGGAGAAATGGA
** * *
96315886 GTACAGCGGTAGATACAGGCCGGGAGAAATTGA
1 GTATGGCGGTGGATACAGGCCGGGAGAAATGGA
*
96315919 GTATGGTGGTGGATACA
1 GTATGGCGGTGGATACA
96315936 AGCTGGAAGG
Statistics
Matches: 66, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.28, C:0.12, G:0.41, T:0.18
Consensus pattern (33 bp):
GTATGGCGGTGGATACAGGCCGGGAGAAATGGA
Found at i:96316134 original size:12 final size:12
Alignment explanation
Indices: 96316102--96316136 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
96316092 AGAGTGTAGT
96316102 TCCGGCTTTGGC
1 TCCGGCTTTGGC
**
96316114 TCCAACTTTGGC
1 TCCGGCTTTGGC
96316126 TCCGGCTTTGG
1 TCCGGCTTTGG
96316137 TGCATGATGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.31, G:0.29, T:0.34
Consensus pattern (12 bp):
TCCGGCTTTGGC
Done.