Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 29 of 332
Found at i:8578841 original size:43 final size:43
Alignment explanation
Indices: 8578787--8578868 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
8578777 CATGTATCGC
* * *
8578787 ATCCATTATGAACTCGGACCA-CTCAATGAGCTCGGATGCTCGT
1 ATCCATAATGAACTCAGACCACCT-AACGAGCTCGGATGCTCGT
8578830 ATCCATAATGAACTCAGACCACCTAACGAGCTCGGATGC
1 ATCCATAATGAACTCAGACCACCTAACGAGCTCGGATGC
8578869 CACATTTATC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 33 0.94
44 2 0.06
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
ATCCATAATGAACTCAGACCACCTAACGAGCTCGGATGCTCGT
Found at i:8585102 original size:30 final size:29
Alignment explanation
Indices: 8585068--8585181 Score: 108
Period size: 30 Copynumber: 3.9 Consensus size: 29
8585058 TTTTACGTGT
8585068 GAGCCTTTGTGGCTGATTCTGATGTAAGAA
1 GAGCCTTTGTGGCTGATTCTGAT-TAAGAA
*
8585098 GAGCCTTTTTGGCTGATTCTGATATGAA-AA
1 GAGCCTTTGTGGCTGATTCTGAT-T-AAGAA
** * * *
8585128 GAGAGTTTTTGGCTAATTCTTTATT-AGAA
1 GAGCCTTTGTGGCTGATTC-TGATTAAGAA
*
8585157 GAGCCTTTGTGGTTGATTCT-ATTAA
1 GAGCCTTTGTGGCTGATTCTGATTAA
8585182 AGGCGCCTTC
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 3 0.04
28 3 0.04
29 16 0.23
30 42 0.61
31 5 0.07
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (29 bp):
GAGCCTTTGTGGCTGATTCTGATTAAGAA
Found at i:8588590 original size:6 final size:6
Alignment explanation
Indices: 8588579--8588610 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8588569 GAGGGACTGT
8588579 GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG GG
1 GGTGGG GGTGGG GGTGGG GGTGGG GGTGGG GG
8588611 ACGGGACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.84, T:0.16
Consensus pattern (6 bp):
GGTGGG
Found at i:8590103 original size:20 final size:20
Alignment explanation
Indices: 8590078--8590118 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8590068 CATAGCGATA
8590078 TAGTGTGAAGACCAAAGAAT
1 TAGTGTGAAGACCAAAGAAT
8590098 TAGTGTGAAGACCAAAGAAT
1 TAGTGTGAAGACCAAAGAAT
8590118 T
1 T
8590119 TGACTCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (20 bp):
TAGTGTGAAGACCAAAGAAT
Found at i:8599998 original size:16 final size:15
Alignment explanation
Indices: 8599952--8599999 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 15
8599942 TAATTTCAAA
8599952 TAATATATTTCATTATT
1 TAATATATTT-ATT-TT
8599969 TAATATATTCTATTTT
1 TAATATATT-TATTTT
8599985 TAAATATATTTATTT
1 T-AATATATTTATTT
8600000 CTACATGTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.28
17 20 0.69
18 1 0.03
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (15 bp):
TAATATATTTATTTT
Found at i:8600282 original size:7 final size:7
Alignment explanation
Indices: 8600270--8600297 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8600260 TATAATATAA
8600270 ATATTTT
1 ATATTTT
8600277 ATATTTT
1 ATATTTT
8600284 ATATTTT
1 ATATTTT
8600291 ATATTTT
1 ATATTTT
8600298 TTTTAACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATATTTT
Found at i:8606107 original size:33 final size:32
Alignment explanation
Indices: 8606053--8606114 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
8606043 ATTCTGAAAC
*
8606053 TTTGTTAAATGATATTAAAAAACTATAAAATAT
1 TTTGTTAAATGAAATTAAAAAA-TATAAAATAT
*
8606086 TTTGTTAAAAT-AAATTTAAAAATATAAAA
1 TTTGTT-AAATGAAATTAAAAAATATAAAA
8606115 CAAAAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 7 0.27
33 15 0.58
34 4 0.15
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.39
Consensus pattern (32 bp):
TTTGTTAAATGAAATTAAAAAATATAAAATAT
Found at i:8608407 original size:30 final size:30
Alignment explanation
Indices: 8608373--8608433 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
8608363 CATTATTCAC
8608373 ATCATTAATATAATCCAAGCACCATGAAAA
1 ATCATTAATATAATCCAAGCACCATGAAAA
*
8608403 ATCATTAATATAATCTAAGCACCATGAAAA
1 ATCATTAATATAATCCAAGCACCATGAAAA
8608433 A
1 A
8608434 AAACAATAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.51, C:0.18, G:0.07, T:0.25
Consensus pattern (30 bp):
ATCATTAATATAATCCAAGCACCATGAAAA
Found at i:8611267 original size:42 final size:42
Alignment explanation
Indices: 8611219--8611310 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
8611209 TGGCCCTTAG
*
8611219 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
8611261 TCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
8611303 GCCCATTT
1 GCCCATTT
8611311 GGGGAGACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:8611486 original size:25 final size:24
Alignment explanation
Indices: 8611458--8611527 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
8611448 CTCTTTTAAT
8611458 AACTGGGGCAAAGCCTTTTCTGATA
1 AACTGGGGCAAAGCCTTTTC-GATA
* *
8611483 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGC-AAAGCCTTTTCGATA
*
8611508 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAG-CCTTTT
8611528 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 2 0.05
25 27 0.69
26 10 0.26
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (24 bp):
AACTGGGGCAAAGCCTTTTCGATA
Found at i:8612356 original size:27 final size:28
Alignment explanation
Indices: 8612325--8612393 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
8612315 TACGGAACAT
*
8612325 AAGGGCATATT-C-GTCATTTTACCATAC
1 AAGGGC-TATTACGGTCACTTTACCATAC
*
8612352 AAGGG-TATTACGGTCACTTTACCCTAC
1 AAGGGCTATTACGGTCACTTTACCATAC
8612379 AAGGGCT-TTACGGTC
1 AAGGGCTATTACGGTC
8612394 TTTTTACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
25 4 0.11
26 1 0.03
27 31 0.84
28 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (28 bp):
AAGGGCTATTACGGTCACTTTACCATAC
Found at i:8612399 original size:27 final size:27
Alignment explanation
Indices: 8612337--8612401 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
8612327 GGGCATATTC
8612337 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* *
8612364 GTCACTTTACCCTACAAGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
8612391 GTCTTTTTACC
1 GTCATTTTACC
8612402 TATTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:8612485 original size:27 final size:27
Alignment explanation
Indices: 8612455--8612540 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
8612445 GTAAATCTAC
8612455 AAACCAATGGTATTTC-AGTAATTTTGT
1 AAACCAATGGTATTTCTA-TAATTTTGT
8612482 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAATGGTATTTCTATAATTTTGT
* * *
8612508 AGAAAGTCAAGGGTATTTTTATAATTTTGT
1 --AAA-CCAATGGTATTTCTATAATTTTGT
8612538 AAA
1 AAA
8612541 TTAGGAGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
26 1 0.02
27 23 0.45
28 7 0.14
29 19 0.37
30 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (27 bp):
AAACCAATGGTATTTCTATAATTTTGT
Found at i:8612559 original size:27 final size:26
Alignment explanation
Indices: 8612517--8612668 Score: 178
Period size: 27 Copynumber: 5.7 Consensus size: 26
8612507 TAGAAAGTCA
** ** *
8612517 AGGGTATTTTTATAATTTTGTAAATT
1 AGGGTATTTTGGTAATTTTACAAACT
*
8612543 AGGAGTATTTTGGTAATTTTACAAATT
1 AGG-GTATTTTGGTAATTTTACAAACT
* *
8612570 GAGGGTATTTCGGTAATTTCACAAACT
1 -AGGGTATTTTGGTAATTTTACAAACT
*
8612597 AGTGGTATTTCGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACT
8612624 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
8612651 AGGGGTATTTTGGTAATT
1 A-GGGTATTTTGGTAATT
8612669 CTATCCTATA
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.04
27 104 0.92
28 4 0.04
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.43
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:8612685 original size:81 final size:81
Alignment explanation
Indices: 8612542--8612701 Score: 191
Period size: 81 Copynumber: 2.0 Consensus size: 81
8612532 TTTTGTAAAT
* *
8612542 TAGGAGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTT
1 TAGGAGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTT
* *
8612607 CGGTAATTTTACAAAC
66 CAGTAATTTCACAAAC
* * **
8612623 TAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTA-TAGGGGTA
1 TAGGAGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTC-A-CAAACTAGGGGTA
*
8612685 TTTTAGTAATTTCACAA
63 TTTCAGTAATTTCACAA
8612702 TCGAGGGTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
80 3 0.04
81 60 0.90
82 4 0.06
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
TAGGAGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTT
CAGTAATTTCACAAAC
Found at i:8612708 original size:27 final size:27
Alignment explanation
Indices: 8612542--8612701 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
8612532 TTTTGTAAAT
* *
8612542 TAGGAGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTCACAAAC
* *
8612568 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTCACAAAC
* * *
8612596 TAGTGGTATTTCGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTCACAAAC
*
8612623 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTCACAAAC
**
8612650 TAGGGGTATTTTGGTAA-TTCTATCCTA-
1 TAGGGGTATTTTGGTAATTTC-A-CAAAC
*
8612677 TAGGGGTATTTTAGTAATTTCACAA
1 TAGGGGTATTTTGGTAATTTCACAA
8612702 TCGAGGGTAA
Statistics
Matches: 114, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.04
27 102 0.89
28 7 0.06
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTCACAAAC
Found at i:8612734 original size:27 final size:27
Alignment explanation
Indices: 8612700--8612897 Score: 247
Period size: 27 Copynumber: 7.3 Consensus size: 27
8612690 GTAATTTCAC
* * *
8612700 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
8612727 AA-CTGAGGGTAAAATGATAAATT-TATA
1 AATC-GAGGGTAAAATGGT-AATTCTATA
*
8612754 AATCGAGAGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
8612781 AATCGAGGTTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
8612808 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* **
8612835 AATCGAGGGTGAAACAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
8612862 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
8612889 AATCGAGGG
1 AATCGAGGG
8612898 CATTTCAGTA
Statistics
Matches: 148, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
26 5 0.03
27 138 0.93
28 5 0.03
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:8612909 original size:81 final size:81
Alignment explanation
Indices: 8612752--8612917 Score: 224
Period size: 81 Copynumber: 2.0 Consensus size: 81
8612742 GATAAATTTA
** * *
8612752 TAAATCGAGAGTAAAATGGTAATTCTATAAATCGAGGTTAAAATGGTAATTCTATAAATCGAGGG
1 TAAATCGAGAGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
* * *
8612817 TAAAACGGTAATTTTG
66 CAAAACAGTAATTTGG
* *
8612833 TAAATCGAGGGTGAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 TAAATCGAGAGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
***
8612898 CATTTCAGTAATTTGG
66 CAAAACAGTAATTTGG
8612914 TAAA
1 TAAA
8612918 CTAAAGTATT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
TAAATCGAGAGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
CAAAACAGTAATTTGG
Found at i:8615102 original size:42 final size:41
Alignment explanation
Indices: 8614989--8615111 Score: 149
Period size: 42 Copynumber: 2.9 Consensus size: 41
8614979 CGGAAAGCTC
* * *
8614989 ATACAATGCCAACGTCTCAGACGTGGTCTTACATGTAAACAA
1 ATACGATGCCAAAGTCCCAGACGTGGTCTTACATG-AAACAA
** *
8615031 ATATCGATGCCACTGTCCAAGACAG-GGTCTTACATGAAATCAA
1 ATA-CGATGCCAAAGTCCCAGAC-GTGGTCTTACATGAAA-CAA
8615074 ATACGATGCCAAAGTCCCAGACGTGGTCTTACATGAAA
1 ATACGATGCCAAAGTCCCAGACGTGGTCTTACATGAAA
8615112 ACACATATCG
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
41 1 0.01
42 36 0.52
43 31 0.45
44 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.23
Consensus pattern (41 bp):
ATACGATGCCAAAGTCCCAGACGTGGTCTTACATGAAACAA
Found at i:8619936 original size:22 final size:22
Alignment explanation
Indices: 8619861--8619936 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
8619851 ACATGCATAT
*
8619861 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCAAATGGCCA
* ** *
8619883 ATGTGATGAATGTGAACAT-GCATA
1 ATGTGAT-AAGGCCAA-ATGGC-CA
8619907 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCAAATGGCCA
8619930 ATGTGAT
1 ATGTGAT
8619937 GGATGTGAAC
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCAAATGGCCA
Found at i:8620030 original size:22 final size:22
Alignment explanation
Indices: 8620002--8620073 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
8619992 ACATACATAT
8620002 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
8620024 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
8620048 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
8620071 ATG
1 ATG
8620074 CGATGAATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:8620171 original size:22 final size:21
Alignment explanation
Indices: 8620143--8620265 Score: 54
Period size: 22 Copynumber: 5.3 Consensus size: 21
8620133 ACTTGCATAT
8620143 ATGTGATAAGGCAGAATGGCCA
1 ATGTGATAAGG-AGAATGGCCA
* * *
8620165 ATGTGATGAATGTGAACTTG-CA
1 ATGTGAT-AAGGAGAA-TGGCCA
*
8620187 TATGTTTGATAAGGCCGAATGGCCA
1 -ATG--TGATAAGG-AGAATGGCCA
*
8620212 ATGTGATGAATGTGA-ACAT-GCATA
1 ATGTGAT-AA-G-GAGA-ATGGC-CA
8620236 TATGTGATAAGGTAGAATGGCCA
1 -ATGTGATAAGG-AGAATGGCCA
8620259 ATGTGAT
1 ATGTGAT
8620266 GAACGTGGAA
Statistics
Matches: 76, Mismatches: 9, Indels: 32
0.65 0.08 0.27
Matches are distributed among these distances:
22 24 0.32
23 18 0.24
24 17 0.22
25 17 0.22
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (21 bp):
ATGTGATAAGGAGAATGGCCA
Found at i:8620288 original size:47 final size:47
Alignment explanation
Indices: 8619840--8620268 Score: 678
Period size: 47 Copynumber: 9.1 Consensus size: 47
8619830 GATTTTATGA
8619840 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
8619887 GATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * *
8619934 GATGGATGTGAACTTGCATATGTGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
8619981 GATGCATGTGAACATACATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
8620028 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGC
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * * *
8620075 GATGAATGTGAACTTGCATATGTGTGATAAGGCTGAATGACCAATGC
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
8620122 GATGAATGTGAACTTGCATATATGTGATAAGGCAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * *
8620169 GATGAATGTGAACTTGCATATGTTTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
8620216 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
8620263 GATGAA
1 GATGAA
8620269 CGTGGAAGTG
Statistics
Matches: 352, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 352 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:8620342 original size:46 final size:46
Alignment explanation
Indices: 8620292--8620418 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
8620282 ATATGTGGCG
*
8620292 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGAGAAACGTGTATGAGATGGATATGAGGTA
8620338 AAGCCGAATGGCTAATGAGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGAGAAACGTGTATGAGATGGATATGAGGTA
* * * **
8620384 AAGCCGAATGGTTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGAGAAACGTGTATGAGATG
8620419 TGTATATATA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGAGAAACGTGTATGAGATGGATATGAGGTA
Found at i:8640048 original size:14 final size:14
Alignment explanation
Indices: 8640029--8640065 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
8640019 TTAACAATGT
8640029 TAAAGAAAGAAATA
1 TAAAGAAAGAAATA
8640043 TAAAGAATAG-AATA
1 TAAAGAA-AGAAATA
8640057 -AAAGAAAGA
1 TAAAGAAAGA
8640066 GATGTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.10
13 6 0.29
14 11 0.52
15 2 0.10
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (14 bp):
TAAAGAAAGAAATA
Found at i:8641222 original size:24 final size:24
Alignment explanation
Indices: 8641190--8641248 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
8641180 CTCTGAGTTT
* *
8641190 GGATTTTCTT-TAACATCTTCTTCC
1 GGATCTTCTTCTAA-ATCTTCCTCC
8641214 GGATCTTCTTCTAAATCTTCCTCC
1 GGATCTTCTTCTAAATCTTCCTCC
* *
8641238 GGGTCCTCTTC
1 GGATCTTCTTC
8641249 AACCTCTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.14, C:0.31, G:0.12, T:0.44
Consensus pattern (24 bp):
GGATCTTCTTCTAAATCTTCCTCC
Found at i:8644983 original size:29 final size:29
Alignment explanation
Indices: 8644951--8645173 Score: 250
Period size: 29 Copynumber: 7.7 Consensus size: 29
8644941 CAGATAGTTT
*
8644951 CGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCGACTATGAAAAGGGATGGTGA
*
8644980 CGACCATCAACTATGAAAAGGGATGGTGA
1 CGACCATCGACTATGAAAAGGGATGGTGA
* * **
8645009 TGACCATCGTA-TATGAAAAGGGATAGTTT
1 CGACCATCG-ACTATGAAAAGGGATGGTGA
* * *
8645038 CGACTATAGACTATAAAAAGGGATGGTGA
1 CGACCATCGACTATGAAAAGGGATGGTGA
* * * *
8645067 CAACCATCAACTATGAAAAGGGATTGTAA
1 CGACCATCGACTATGAAAAGGGATGGTGA
* **
8645096 CGACCATCGATTAATGAAAAGGGATGGTTT
1 CGACCATCGACT-ATGAAAAGGGATGGTGA
*
8645126 CGACCATCGAATATGAAAAGGGATGGTGA
1 CGACCATCGACTATGAAAAGGGATGGTGA
* *
8645155 TGACCATCGAATATGAAAA
1 CGACCATCGACTATGAAAA
8645174 TGTATGTTTA
Statistics
Matches: 160, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
28 1 0.01
29 133 0.83
30 26 0.16
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.22
Consensus pattern (29 bp):
CGACCATCGACTATGAAAAGGGATGGTGA
Found at i:8645082 original size:87 final size:88
Alignment explanation
Indices: 8644943--8645173 Score: 333
Period size: 87 Copynumber: 2.6 Consensus size: 88
8644933 ATAGAAAACA
*
8644943 GATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTG
1 GATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTA
*
8645008 ATGACCATCG--TATATGAAAAGG
66 ACGACCATCGATTA-ATGAAAAGG
* * * *
8645030 GATAGTTTCGACTATAGACTATAAAAAGGGATGGTGACAACCATCAACTATGAAAAGGGATTGTA
1 GATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTA
8645095 ACGACCATCGATTAATGAAAAGG
66 ACGACCATCGATTAATGAAAAGG
* * * *
8645118 GATGGTTTCGACCATCGAATATGAAAAGGGATGGTGATGACCATCGAA-TATGAAAA
1 GATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATC-AACTATGAAAA
8645174 TGTATGTTTA
Statistics
Matches: 128, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
87 69 0.54
88 55 0.43
89 4 0.03
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (88 bp):
GATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTA
ACGACCATCGATTAATGAAAAGG
Found at i:8662489 original size:46 final size:45
Alignment explanation
Indices: 8662422--8662592 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
8662412 AACCCGCCCC
* *
8662422 TAAGTGAACTCAGACTCAACTCAACGAGCTCGAGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGC-TTCGTATCCA
* *
8662468 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCTA--CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GCTTCG-TATCCA
* *
8662514 TTTCA-TGAACTCGGACTCAACTCAACGAGTTC-AGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGAG-C-TTCGTATCCA
8662561 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
8662593 GATGCTCAAC
Statistics
Matches: 105, Mismatches: 9, Indels: 21
0.78 0.07 0.16
Matches are distributed among these distances:
44 1 0.01
45 5 0.05
46 60 0.57
47 33 0.31
48 6 0.06
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCTTCGTATCCA
Found at i:8662539 original size:93 final size:93
Alignment explanation
Indices: 8662426--8662597 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
8662416 CGCCCCTAAG
* *
8662426 TGAACTCAGACTCAACTCAACGAGCTC-GAGCGTTCGTATCCATAAGTGAACTCGGACTCAACTC
1 TGAACTCAGACTCAACTCAACGAGCTCAGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
8662490 AACGAGTTCGGATGCCTAGCTACATTTCA
65 AACGAGTTCGGATGCCTAGCTACATTTCA
* *
8662519 TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8662584 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
8662598 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
93 72 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGCTACATTTCA
Found at i:8677267 original size:24 final size:24
Alignment explanation
Indices: 8677184--8677267 Score: 116
Period size: 25 Copynumber: 3.4 Consensus size: 24
8677174 GAGGAAGTGC
*
8677184 TAAAAGGGCTCTGCCCCAGTTTACT
1 TAAAAGGGCTTTGCCCCAGTTTA-T
8677209 TAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
8677233 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
8677257 TAAAAGAGGCT
1 TAAAAG-GGCT
8677268 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 4 0.07
24 11 0.20
25 39 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:8677461 original size:42 final size:42
Alignment explanation
Indices: 8677402--8677535 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
8677392 TAGTCTCCCC
8677402 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
8677444 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
8677486 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
8677528 AAATGGGC
1 AAATGGGC
8677536 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:8677597 original size:31 final size:31
Alignment explanation
Indices: 8677559--8677766 Score: 301
Period size: 31 Copynumber: 6.7 Consensus size: 31
8677549 CGTTTACAGT
* * *
8677559 AAAGGCTTCGGTCTAGTGATATGATCTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
8677590 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
8677621 AACGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
8677652 AAATGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
8677683 AACGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
8677714 AAAGGCTTCAGCCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
8677745 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
8677767 TCAAGACTAA
Statistics
Matches: 160, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
30 5 0.03
31 155 0.97
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:8685477 original size:114 final size:114
Alignment explanation
Indices: 8685272--8685496 Score: 369
Period size: 114 Copynumber: 2.0 Consensus size: 114
8685262 GATGCTAAGA
* * *
8685272 AAGCCAAGTTTTGGCTCGAGAATACTACACGGGTATTAGATGAATTGTCGTGCACACCTGGGGAG
1 AAGCCAAGTTTTGGCTCAAGAATACTACACGGGTATTAGATGAATTGTCGTACACACCTGAGGAG
* * * *
8685337 TGCTTAAAGTTTGCTATGTTTCTTCTGAAGGATATTGCATACCACTGGT
66 TGCTTAAAGTGTGCCATGTTTCTTCTGAAAGATACTGCATACCACTGGT
*
8685386 AAGCTAAGTTTTGGCTCAAGAATACTACACGGGTATTAGATGAATTGTCGTACACACCTGAGGAG
1 AAGCCAAGTTTTGGCTCAAGAATACTACACGGGTATTAGATGAATTGTCGTACACACCTGAGGAG
*
8685451 TGCTTAAAGTGTGCCGTGTTTCTTCTGAAAGATACTGCATACCACT
66 TGCTTAAAGTGTGCCATGTTTCTTCTGAAAGATACTGCATACCACT
8685497 AGTGGAAGAC
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 102 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (114 bp):
AAGCCAAGTTTTGGCTCAAGAATACTACACGGGTATTAGATGAATTGTCGTACACACCTGAGGAG
TGCTTAAAGTGTGCCATGTTTCTTCTGAAAGATACTGCATACCACTGGT
Found at i:8711511 original size:43 final size:43
Alignment explanation
Indices: 8711464--8711583 Score: 111
Period size: 42 Copynumber: 2.8 Consensus size: 43
8711454 AGACGTGGTC
*
8711464 TTACATGTAATCAAATATCGATGCCACTATCCCAAACAGGGTG
1 TTACATGTAATCAAATATCGATGCCACTATCCCAAACAGGGTA
** * * * * * *
8711507 TTACATAAAATCATATAT-GATGCCAATGTCCTAGACATGGTA
1 TTACATGTAATCAAATATCGATGCCACTATCCCAAACAGGGTA
8711549 TTACATGTAAATCAAA-AGTCGATGCCAAC-ATCCCA
1 TTACATGT-AATCAAATA-TCGATGCC-ACTATCCCA
8711584 GACGTGGTCT
Statistics
Matches: 58, Mismatches: 15, Indels: 7
0.73 0.19 0.09
Matches are distributed among these distances:
42 25 0.43
43 22 0.38
44 10 0.17
45 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (43 bp):
TTACATGTAATCAAATATCGATGCCACTATCCCAAACAGGGTA
Found at i:8711574 original size:44 final size:43
Alignment explanation
Indices: 8711450--8711599 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
8711440 AATGCCAGCG
* *
8711450 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTA
1 TCCCAGACATGGTCTTACATGTAAATCAAA-ATCGATGCCAATA
* * * * * *
8711493 TCCCAAACAGGGTGTTACAT-AAAATCATATAT-GATGCCAATG
1 TCCCAGACATGGTCTTACATGTAAATCA-AAATCGATGCCAATA
* * *
8711535 TCCTAGACATGGTATTACATGTAAATCAAAAGTCGATGCCAACA
1 TCCCAGACATGGTCTTACATGTAAATCAAAA-TCGATGCCAATA
*
8711579 TCCCAGACGTGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
8711600 ATAACACATA
Statistics
Matches: 83, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 26 0.31
43 30 0.36
44 27 0.33
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAAATCAAAATCGATGCCAATA
Found at i:8713508 original size:81 final size:80
Alignment explanation
Indices: 8713382--8713594 Score: 318
Period size: 81 Copynumber: 2.6 Consensus size: 80
8713372 AGAATTACTA
* * *
8713382 AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCTTG
1 AAATACCCCTATAGGGTAGAATTA-TGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
* *
8713447 TAGGGTAGAATTATCG
65 CAGGATAGAATTATCG
*
8713463 AAATACCCCTATAGGGTAGAATTAGTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTATAGGGTAGAATTA-TGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
8713528 CAGGATAGAATTATCG
65 CAGGATAGAATTATCG
* * *
8713544 AAATACCCTTATAAGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTA
1 AAATACCCCTATAGGGTAGAATTAT-GAAATACCCCTGTAGGGTAGAATTA
8713595 TCGAGATATC
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 119 0.99
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (80 bp):
AAATACCCCTATAGGGTAGAATTATGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGC
AGGATAGAATTATCG
Found at i:8713596 original size:27 final size:27
Alignment explanation
Indices: 8713382--8713598 Score: 278
Period size: 27 Copynumber: 8.0 Consensus size: 27
8713372 AGAATTACTA
*
8713382 AAATACCCCTATAGGGTAGAATTA-CTG
1 AAATACCCCTGTAGGGTAGAATTATC-G
*
8713409 AAATACCCCTGTAAGGTAGAATTA-CTG
1 AAATACCCCTGTAGGGTAGAATTATC-G
*
8713436 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* *
8713463 AAATACCCCTATAGGGTAGAATTAGT-A
1 AAATACCCCTGTAGGGTAGAATTA-TCG
*
8713490 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* *
8713517 AAATACCCCTGCAGGATAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* * * *
8713544 AAATACCCTTATAAGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
8713571 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
8713598 A
1 A
8713599 GATATCCTTG
Statistics
Matches: 164, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
27 162 0.99
28 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTATCG
Found at i:8722862 original size:113 final size:113
Alignment explanation
Indices: 8722512--8722970 Score: 702
Period size: 113 Copynumber: 4.0 Consensus size: 113
8722502 ATATTTGATG
** *
8722512 TATATCCGGGTTAAATCCCGCAGGCTTAGTACTGGTATTATATCCGGGTTTTATCCCGCAGGCTT
1 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCGGG-TTTATCCCGCAGGCTT
* *
8722577 AGTGCTGGTATTATTTCCGGGTTAAATCCCGCAGGATTAGTGCTGGTAT
65 AGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
* * *
8722626 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGATATTATATCTGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCGGGTT-TATCCCGCAGGCTT
8722691 AGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
65 AGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
* * *
8722740 TATATCCGGGTTTTATCCCGCAGGCTTTGTGCTGGTATTATATCCGAGTTTATCCCGCAGGCTTC
1 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCGGGTTTATCCCGCAGGCTTA
* * ** * * *
8722805 GTGCTAGTATTATATCCAGGTTTTATCTCGTAGGCTTCGTGCTGGTAT
66 GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
*
8722853 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCGGGTTTATCCCGCAGGCTTC
1 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCGGGTTTATCCCGCAGGCTTA
* **
8722918 GTGCTGGTATTATATTCGGGTTAAATCCCATAGGCTTAGTGCTGGTAT
66 GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
8722966 TATAT
1 TATAT
8722971 TCGAGCTTAA
Statistics
Matches: 313, Mismatches: 31, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
113 164 0.52
114 149 0.48
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (113 bp):
TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTATTATATCCGGGTTTATCCCGCAGGCTTA
GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
Found at i:8722971 original size:38 final size:38
Alignment explanation
Indices: 8722512--8723003 Score: 664
Period size: 38 Copynumber: 12.9 Consensus size: 38
8722502 ATATTTGATG
* *
8722512 TATATCCGGGTTAAATCCCGCAGGCTTAGTACTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
*
8722550 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* * *
8722588 TATTTCCGGGTTAAATCCCGCAGGATTAGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* *
8722626 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGATAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* *
8722664 TATATCTGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
*
8722702 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* *
8722740 TATATCCGGGTTTTATCCCGCAGGCTTTGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* * *
8722778 TATATCCGAGTT-TATCCCGCAGGCTTCGTGCTAGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* * * * *
8722815 TATATCCAGGTTTTATCTCGTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
*
8722853 TATATCCGGGTTTTATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
*
8722891 TATATCCGGGTT-TATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* * **
8722928 TATATTCGGGTTAAATCCCATAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
* * * * *
8722966 TATATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATATCCG-GGTTATA-TCCCGCAGGCTTAGTGCTGGT
8723004 GACTGGATTC
Statistics
Matches: 407, Mismatches: 43, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
37 68 0.17
38 316 0.78
39 6 0.01
40 17 0.04
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.36
Consensus pattern (38 bp):
TATATCCGGGTTATATCCCGCAGGCTTAGTGCTGGTAT
Found at i:8724824 original size:27 final size:27
Alignment explanation
Indices: 8724786--8725038 Score: 337
Period size: 27 Copynumber: 9.4 Consensus size: 27
8724776 TGGATAAGTT
8724786 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
8724813 GTAGAATTACTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
* **
8724840 GTAGAATTACCGAAATACCCCTGTAAT
1 GTAGAATTACTGAAATACCCCTGTAGG
8724867 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
8724894 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
8724921 GTAGAATTACCGAAATACCCGTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * *
8724948 ATAGAATTACCGAAACACCCTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
8724975 GTAGAAATA-TCAAAATACCCCTATAGG
1 GTAGAATTACT-GAAATACCCCTGTAGG
* * *
8725002 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
8725029 GTAAAATTAC
1 GTAGAATTAC
8725039 CATTTTGCCC
Statistics
Matches: 199, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
27 198 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:8725749 original size:21 final size:22
Alignment explanation
Indices: 8725719--8725760 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
8725709 ATATCTATTT
*
8725719 TGGTGACTTCGTCACA-ATATC
1 TGGTGACTTCGCCACACATATC
*
8725740 TGGTGGCTTCGCCACACATAT
1 TGGTGACTTCGCCACACATAT
8725761 ATATATATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (22 bp):
TGGTGACTTCGCCACACATATC
Found at i:8728868 original size:93 final size:93
Alignment explanation
Indices: 8728756--8728927 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
8728746 CGCCCATAAG
*
8728756 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
8728820 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
8728849 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
8728914 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
8728928 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:8728922 original size:46 final size:46
Alignment explanation
Indices: 8728749--8728924 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
8728739 TGTAACCCGC
* *
8728749 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
8728795 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
8728845 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8728888 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
8728925 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8736946 original size:38 final size:38
Alignment explanation
Indices: 8736885--8737004 Score: 145
Period size: 38 Copynumber: 3.1 Consensus size: 38
8736875 ATTTGATGTG
* * *
8736885 TATCCGGGCTTAAAGACCTGCAGGCTATATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCTGCAGGCTATGTGCTGGTATTA
8736925 TATCCGGGTTAAATCCTGCAGGCT-TCGTGCTGGTATTA
1 TATCCGGGTTAAATCCTGCAGGCTAT-GTGCTGGTATTA
* *
8736963 TATCCGGGTTAAATCCCGCAAGCCTA-GTGCTGGTATTA
1 TATCCGGGTTAAATCCTGC-AGGCTATGTGCTGGTATTA
8737001 TATC
1 TATC
8737005 TGAGTTTAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
37 1 0.01
38 54 0.75
39 9 0.12
40 8 0.11
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCTGCAGGCTATGTGCTGGTATTA
Found at i:8737033 original size:40 final size:38
Alignment explanation
Indices: 8736914--8737041 Score: 157
Period size: 38 Copynumber: 3.3 Consensus size: 38
8736904 GCAGGCTATA
* *
8736914 TGCTGGAATTATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
8736952 TGCTGGTATTATATCCGGGTTAAATCCCGCAAGCCTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
8736990 TGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGCTTCG
1 TGCTGGTATTATATCCG-GGTTAAA-TCCCGCAGGCTTCG
*
8737030 TGCTGGTGTTAT
1 TGCTGGTATTAT
8737042 GTTCGAGTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
38 49 0.64
39 6 0.08
40 21 0.28
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:8741378 original size:41 final size:40
Alignment explanation
Indices: 8741246--8741417 Score: 188
Period size: 39 Copynumber: 4.3 Consensus size: 40
8741236 GCTCCTCGTT
* * ** * *
8741246 CAAATGCCTTCGGGACATAGCCCGTTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
8741286 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
8741325 CGAATGCCTTCGGGACTTTACCCGGATTTAGTATCTCCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCT-CGCA
* * *
8741366 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTAT-TCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
8741405 CAAATGCCTTCGG
1 CAAATGCCTTCGG
8741418 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 49 0.43
40 33 0.29
41 29 0.25
42 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:8875124 original size:12 final size:12
Alignment explanation
Indices: 8875107--8875131 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8875097 TGCTATGGGT
8875107 GGAAACATGTTG
1 GGAAACATGTTG
8875119 GGAAACATGTTG
1 GGAAACATGTTG
8875131 G
1 G
8875132 CTAGTGAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.36, T:0.24
Consensus pattern (12 bp):
GGAAACATGTTG
Found at i:8876416 original size:40 final size:40
Alignment explanation
Indices: 8876348--8876522 Score: 210
Period size: 40 Copynumber: 4.3 Consensus size: 40
8876338 CGACTAAGAT
* *
8876348 CCGAAGGTATTTGTGCGA-AGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGATA--TACTAATTCCGGGTTAAGTC
*
8876389 CCGAAGGCCTTTGTGCGATATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGATATACTAATTCCGGGTTAAGTC
* * *
8876429 CCGAAGGCCTTTGTGCGAGATACTAATTACGGGTTAAGTC
1 CCGAAGGCATTTGTGCGATATACTAATTCCGGGTTAAGTC
* * * *
8876469 CCGAAGGCATTCGTGCGAGTTTTA-AAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGA--TATACTAATTCCGGGTTAAGTC
8876510 CCGAAGGCATTTG
1 CCGAAGGCATTTG
8876523 AATGAGTTAC
Statistics
Matches: 118, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
40 73 0.62
41 42 0.36
42 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGATATACTAATTCCGGGTTAAGTC
Found at i:8876509 original size:81 final size:81
Alignment explanation
Indices: 8876348--8876522 Score: 228
Period size: 81 Copynumber: 2.2 Consensus size: 81
8876338 CGACTAAGAT
* * * * * * *
8876348 CCGAAGGTATTTGTGCGAAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGATATACT
1 CCGAAGGCATTTGTGCGAAGATACTAATTACGGGTTAAGTCCCGAAGGCATTCGTGCGATATACA
*
8876413 AATTCCGGGTTAAGTC
66 AAATCCGGGTTAAGTC
* *
8876429 CCGAAGGCCTTTGTGCG-AGATACTAATTACGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTA
1 CCGAAGGCATTTGTGCGAAGATACTAATTACGGGTTAAGTCCCGAAGGCATTCGTGCGA--TATA
8876493 -AAAATCCGGGTTAAGTC
64 CAAAATCCGGGTTAAGTC
8876510 CCGAAGGCATTTG
1 CCGAAGGCATTTG
8876523 AATGAGTTAC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
80 36 0.44
81 42 0.52
82 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (81 bp):
CCGAAGGCATTTGTGCGAAGATACTAATTACGGGTTAAGTCCCGAAGGCATTCGTGCGATATACA
AAATCCGGGTTAAGTC
Found at i:8876542 original size:81 final size:80
Alignment explanation
Indices: 8876378--8876558 Score: 204
Period size: 81 Copynumber: 2.2 Consensus size: 80
8876368 TTATTAATTC
* * * * * *
8876378 CGGGTTAAGTCCCGAAGGCCTTTGTGCGATATACTAATTCCGGGTTAAGTCCCGAAGGCCTTTGT
1 CGGGTTAAGTCCCGAAGGCATTCGTGCGATATACAAAATCCGGGTTAAGTCCCGAAGGCATTTGA
* *
8876443 GCGAGATACTAATTA
66 ACGAGATACTAATAA
*
8876458 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTA-AAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CGGGTTAAGTCCCGAAGGCATTCGTGCGA--TATACAAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
8876522 GAATGAGTTAC-ATATAA
64 GAACGAGATACTA-ATAA
* *
8876539 CGGGCTATGTCCCGAAGGCA
1 CGGGTTAAGTCCCGAAGGCA
8876559 CTTGAACGAG
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
80 28 0.33
81 54 0.64
82 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (80 bp):
CGGGTTAAGTCCCGAAGGCATTCGTGCGATATACAAAATCCGGGTTAAGTCCCGAAGGCATTTGA
ACGAGATACTAATAA
Found at i:8880064 original size:20 final size:19
Alignment explanation
Indices: 8880018--8880064 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
8880008 TTTTGTTTTT
* *
8880018 TTTCTTTTCTTCCTACCGA
1 TTTCTATTCTTCCTACCAA
8880037 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTC-CTAC-CAA
8880058 TTT-TATT
1 TTTCTATT
8880065 TTTTACTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.46
20 8 0.33
21 5 0.21
ACGTcount: A:0.17, C:0.26, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTCTATTCTTCCTACCAA
Found at i:8881719 original size:58 final size:57
Alignment explanation
Indices: 8881629--8881762 Score: 211
Period size: 58 Copynumber: 2.4 Consensus size: 57
8881619 AATGATGATG
*
8881629 AAGAAAGAAAAAGAAAG---AAAGAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAA
1 AAGAAAGAAAAAGAAAGAAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAA
*
8881683 AAGAAAGAAAAAGAAAGAAAAAAAAAAGAAAGCTCTCATGTTGTTCTTGGCCGAATAG
1 AAGAAAGAAAAAGAAAGAAAAAAAAAA-AAAGCTCTCATGTTGTTCTTGGCCGAATAA
*
8881741 AAGAAAGAAAAAGAAGGAAAAA
1 AAGAAAGAAAAAGAAAGAAAAA
8881763 GAGCTTTGAG
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
54 17 0.23
57 6 0.08
58 50 0.68
ACGTcount: A:0.55, C:0.09, G:0.21, T:0.15
Consensus pattern (57 bp):
AAGAAAGAAAAAGAAAGAAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAA
Found at i:8883002 original size:40 final size:41
Alignment explanation
Indices: 8882899--8883075 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 41
8882889 GGATTGATAA
* ** * *
8882899 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
8882939 CCGGGCTAAG-CCC-AAGGCATTTGTGCGAGTTACCATA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
* *
8882977 CTGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTA-C-TAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
*
8883016 CCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
* *
8883057 CCGGGCTATGTCCCAAAGG
1 CCGGGCTAAGTCCCGAAGG
8883076 TATTCGAGTG
Statistics
Matches: 119, Mismatches: 11, Indels: 14
0.83 0.08 0.10
Matches are distributed among these distances:
38 30 0.25
39 9 0.08
40 77 0.65
41 1 0.01
42 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
Found at i:8889759 original size:10 final size:10
Alignment explanation
Indices: 8889744--8889773 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8889734 GGCCGAATAG
8889744 AAGAAAGAAA
1 AAGAAAGAAA
8889754 AAGAAAGAAA
1 AAGAAAGAAA
*
8889764 AAAAAAGAAA
1 AAGAAAGAAA
8889774 GCTCTCATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:8889763 original size:14 final size:14
Alignment explanation
Indices: 8889744--8889774 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8889734 GGCCGAATAG
*
8889744 AAGAAAGAAAAAGA
1 AAGAAAAAAAAAGA
8889758 AAGAAAAAAAAAGA
1 AAGAAAAAAAAAGA
8889772 AAG
1 AAG
8889775 CTCTCATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAAAGA
Found at i:8889795 original size:57 final size:56
Alignment explanation
Indices: 8889689--8889822 Score: 218
Period size: 57 Copynumber: 2.4 Consensus size: 56
8889679 AAATGATGAT
*
8889689 GAAGAATGAAAAAGAAAG--AAAAAAAAAAGATCTCATGTTGTTCTTGGCCGAATA
1 GAAGAAAGAAAAAGAAAGAAAAAAAAAAAAGATCTCATGTTGTTCTTGGCCGAATA
*
8889743 GAAGAAAGAAAAAGAAAGAAAAAAAAAGAAAGCTCTCATGTTGTTCTTGGCCGAATA
1 GAAGAAAGAAAAAGAAAGAAAAAAAAA-AAAGATCTCATGTTGTTCTTGGCCGAATA
*
8889800 GAAGAAAGAAAAAGAAGGAAAAA
1 GAAGAAAGAAAAAGAAAGAAAAA
8889823 GAGCTTTGAG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
54 17 0.23
56 7 0.09
57 50 0.68
ACGTcount: A:0.54, C:0.08, G:0.22, T:0.16
Consensus pattern (56 bp):
GAAGAAAGAAAAAGAAAGAAAAAAAAAAAAGATCTCATGTTGTTCTTGGCCGAATA
Found at i:8891062 original size:40 final size:40
Alignment explanation
Indices: 8890957--8891214 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
8890947 GGATTGATAA
* ** *
8890957 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATA-T
*
8890997 CTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
**
8891036 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGTCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
*
8891076 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
*
8891116 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-TAT
* * *
8891156 CTGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
*
8891196 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
8891215 TATTCAAGTG
Statistics
Matches: 198, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 33 0.17
40 164 0.83
41 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
Found at i:8891236 original size:120 final size:120
Alignment explanation
Indices: 8890957--8891253 Score: 343
Period size: 120 Copynumber: 2.5 Consensus size: 120
8890947 GGATTGATAA
*** * * * *
8890957 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATTCTGGGCTAAG-CCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCAAGCGAGTAGCCATA-TCCGGGCTAAGTCCCGAAGGCATTT
* *
8891020 GTGCGAGTTACCATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGTCATAT
65 GTGCGAGTTACCATATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTCTCATAT
*** *
8891076 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCCATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCAAGCGAGTAGCCATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
8891141 TGCGAGTTACTAGT-TCTGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACT-ATAT
66 TGCGAGTTACCA-TATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTT-CTCATAT
* * * * * *
8891196 CCGGGCTATGTCCCGAAGGTATTCAAGTGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCAAGCGAGTAGCCATATCCGGGCTAAGTCCCGAAGG
8891254 TACTTGTCTT
Statistics
Matches: 156, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
119 58 0.37
120 96 0.62
121 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTCAAGCGAGTAGCCATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACCATATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTCTCATAT
Found at i:8892701 original size:39 final size:39
Alignment explanation
Indices: 8892658--8892789 Score: 219
Period size: 39 Copynumber: 3.4 Consensus size: 39
8892648 GGTCTTTAAC
* ** * *
8892658 CCGGATATTTTTCCAGCACGTAGCCTGCGAACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
8892697 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
8892736 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
8892775 CCGGATATATTTCCA
1 CCGGATATATTTCCA
8892790 ATCTCATATA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:8896375 original size:40 final size:40
Alignment explanation
Indices: 8896296--8896472 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
8896286 CGGATGATAA
* * ** *
8896296 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
8896336 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* * *
8896376 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
*
8896416 CCGGGCTAAGACCCGAAGGCATTTCTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
8896456 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
8896473 ATACTTGAGT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 99 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:8896434 original size:80 final size:80
Alignment explanation
Indices: 8896296--8896472 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 80
8896286 CGGATGATAA
* * *
8896296 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
8896361 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
*
8896376 CCGGGCTAAGA-CTCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGATC-CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTT
*
8896440 CTGCGAGTTGTTATAT
65 ATGCGAGTTGTTATAT
8896456 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGAT-CCGAAG
8896473 ATACTTGAGT
Statistics
Matches: 87, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
78 1 0.01
79 12 0.14
80 72 0.83
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:8904704 original size:40 final size:40
Alignment explanation
Indices: 8904625--8904801 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
8904615 CGGATGATAA
* * ** *
8904625 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
8904665 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* *
8904705 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
*
8904745 CCGGGCTAAGACCCGAAGGCATTTCTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
8904785 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
8904802 ATACTTGAGT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 101 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:8904763 original size:80 final size:80
Alignment explanation
Indices: 8904625--8904801 Score: 252
Period size: 80 Copynumber: 2.2 Consensus size: 80
8904615 CGGATGATAA
* * * *
8904625 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
8904690 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* *
8904705 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTC
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
8904770 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
8904785 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
8904802 ATACTTGAGT
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 72 0.82
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:8905782 original size:14 final size:14
Alignment explanation
Indices: 8905763--8905793 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8905753 AAAATATTAA
8905763 CAACAAATAGTTCC
1 CAACAAATAGTTCC
8905777 CAACAAATAGTTCC
1 CAACAAATAGTTCC
8905791 CAA
1 CAA
8905794 TTGCCAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.29, G:0.06, T:0.19
Consensus pattern (14 bp):
CAACAAATAGTTCC
Found at i:8914315 original size:39 final size:38
Alignment explanation
Indices: 8914194--8914362 Score: 230
Period size: 39 Copynumber: 4.4 Consensus size: 38
8914184 GGTCTTTAAC
* ** *
8914194 CCGGATATTTTTCCAGCACGTAGCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCTGCGGACCTCATGT
* *
8914232 CTGGATATATTTCAAGCATATAGCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCTGCGGACCTCATGT
* * *
8914270 CTGGATATATTTCCAGCATATAGCTTACGGACTTCATGT
1 CCGGATATATTTCCAGCATATAGC-TGCGGACCTCATGT
8914309 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAG-CTGCGGACCTCATGT
*
8914348 CCAGATATATTTCCA
1 CCGGATATATTTCCA
8914363 ACCTCATATA
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 55 0.47
39 60 0.52
40 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (38 bp):
CCGGATATATTTCCAGCATATAGCTGCGGACCTCATGT
Found at i:8914355 original size:78 final size:76
Alignment explanation
Indices: 8914197--8914362 Score: 224
Period size: 77 Copynumber: 2.2 Consensus size: 76
8914187 CTTTAACCCG
* * * *
8914197 GATATTTTTCCAGCACGTAGCTGCGGACCTCAAGTCTGGATATATTTCAAGCATATAGCTGCGGA
1 GATATATTTCCAGCACATAGCTACGGACCTCAAGTCCGGATATATTTCAAGCATATAGCTGCGGA
**
8914262 CCTCATGTCTG
66 CCTCATGTCCA
* * * *
8914273 GATATATTTCCAGCATATAGCTTACGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCG
1 GATATATTTCCAGCACATAGC-TACGGACCTCAAGTCCGGATATATTTCAAGCATATAG-CTGCG
8914338 GACCTCATGTCCA
64 GACCTCATGTCCA
8914351 GATATATTTCCA
1 GATATATTTCCA
8914363 ACCTCATATA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
76 18 0.23
77 32 0.41
78 28 0.36
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (76 bp):
GATATATTTCCAGCACATAGCTACGGACCTCAAGTCCGGATATATTTCAAGCATATAGCTGCGGA
CCTCATGTCCA
Found at i:8916937 original size:18 final size:19
Alignment explanation
Indices: 8916903--8916938 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8916893 ATTTTGCCAT
*
8916903 ATGGGCCGGATTGGGCTAA
1 ATGGGCCCGATTGGGCTAA
8916922 ATGGGCCCGA-TGGGCTA
1 ATGGGCCCGATTGGGCTA
8916939 TTAGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.19, C:0.19, G:0.42, T:0.19
Consensus pattern (19 bp):
ATGGGCCCGATTGGGCTAA
Found at i:8917051 original size:28 final size:29
Alignment explanation
Indices: 8917005--8917119 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
8916995 GTGAGCATGA
* * * *
8917005 ATATGAATGTGA-CTGGGGCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
8917033 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
***
8917062 ATATATCGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
8917091 ATATGAATATGA-TTGGGCGTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
8917119 A
1 A
8917120 GATACAGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 27 0.37
29 46 0.63
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:8918384 original size:20 final size:21
Alignment explanation
Indices: 8918361--8918403 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8918351 ATACATGAGT
*
8918361 ATTTTG-ATGTTTGATGATAG
1 ATTTTGAATGCTTGATGATAG
*
8918381 ATTTTGAATGCTTGTTGATAG
1 ATTTTGAATGCTTGATGATAG
8918402 AT
1 AT
8918404 CTACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.26, C:0.02, G:0.23, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGCTTGATGATAG
Found at i:8919027 original size:46 final size:48
Alignment explanation
Indices: 8918911--8919038 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 48
8918901 TGTGCACTTT
* *
8918911 GTGTGCGAGATTGAAAATAGTTTCGACTATATTTATATACATTGGCACTTA
1 GTGTGCGAGATTG-AAATAGCTTCGACTATA-TTATATA-ATTGGCAATTA
* * *
8918962 GTGT--GTGACTGAAACAGCTTCTG-CTATA-TATAT-ATTGGCAATTA
1 GTGTGCGAGATTGAAATAGCTTC-GACTATATTATATAATTGGCAATTA
8919006 GTGTGCGAGATTGAAATAGCTTCGACTAT-TTAT
1 GTGTGCGAGATTGAAATAGCTTCGACTATATTAT
8919039 TTGGCACTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
44 14 0.22
45 1 0.02
46 26 0.41
48 13 0.20
49 6 0.09
51 4 0.06
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (48 bp):
GTGTGCGAGATTGAAATAGCTTCGACTATATTATATAATTGGCAATTA
Found at i:8930841 original size:40 final size:40
Alignment explanation
Indices: 8930797--8930896 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
8930787 ACTTCGGTGT
* *
8930797 CCCTGATTTCACATTTGTGCCACTGAATGCACTCTGAAGC
1 CCCTGATTACACATTCGTGCCACTGAATGCACTCTGAAGC
** * * **
8930837 CCCTGACAACACATTCGTGCCCCTGAATGTACTCTGGTGC
1 CCCTGATTACACATTCGTGCCACTGAATGCACTCTGAAGC
* *
8930877 CCCTGATTGCACAGTCGTGC
1 CCCTGATTACACATTCGTGC
8930897 TCTTGATTAC
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (40 bp):
CCCTGATTACACATTCGTGCCACTGAATGCACTCTGAAGC
Found at i:8933203 original size:26 final size:26
Alignment explanation
Indices: 8933138--8933348 Score: 133
Period size: 26 Copynumber: 8.4 Consensus size: 26
8933128 TTATTATCCG
*
8933138 GAGC-TCCTGATTAATGGCTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
* *
8933163 GAGCTTTCC-GTTTAAAGGCTCTTCGT
1 GAGC-TTCCTGATTAAAGGCTCTTTGT
* * * *
8933189 GAGCTTCCTGATTAAAAGTTCTATAT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
* * * *
8933215 GAACTTCTTGATT-ATGGCTCTATGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
**
8933240 GAGCTTCCT-ATTATATA-GC-C-CAGAT
1 GAGCTTCCTGATTA-A-AGGCTCTTTG-T
*
8933265 AAGCTTCCTGA-T--AGGCTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
*
8933288 GAGCTTCTTGA-T--AGGCTCTTTTTGT
1 GAGCTTCCTGATTAAAGGCTC--TTTGT
*
8933313 GAGCTTCCTGATTAATGGCTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
8933339 GAGCTTCCTG
1 GAGCTTCCTG
8933349 TTATATGGAT
Statistics
Matches: 143, Mismatches: 27, Indels: 31
0.71 0.13 0.15
Matches are distributed among these distances:
21 1 0.01
22 2 0.01
23 18 0.13
24 5 0.03
25 49 0.34
26 60 0.42
27 3 0.02
28 5 0.03
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAGGCTCTTTGT
Found at i:8933299 original size:23 final size:23
Alignment explanation
Indices: 8933266--8933348 Score: 112
Period size: 23 Copynumber: 3.4 Consensus size: 23
8933256 AGCCCAGATA
8933266 AGCTTCCTGATAGGCTCTTTGTG
1 AGCTTCCTGATAGGCTCTTTGTG
*
8933289 AGCTTCTTGATAGGCTCTTTTTGTG
1 AGCTTCCTGATAGGCTC--TTTGTG
8933314 AGCTTCCTGATTAATGGCTCTTTGTG
1 AGCTTCCTGA-T-A-GGCTCTTTGTG
8933340 AGCTTCCTG
1 AGCTTCCTG
8933349 TTATATGGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
23 16 0.30
25 15 0.28
26 16 0.30
27 1 0.02
28 5 0.09
ACGTcount: A:0.13, C:0.20, G:0.24, T:0.42
Consensus pattern (23 bp):
AGCTTCCTGATAGGCTCTTTGTG
Found at i:8935337 original size:22 final size:22
Alignment explanation
Indices: 8935311--8935356 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
8935301 TTATTCTATG
8935311 AATTG-ATATATGTTTATAAATT
1 AATTGAATAT-TGTTTATAAATT
* *
8935333 AATTGAATATTTTTTCTAAATT
1 AATTGAATATTGTTTATAAATT
8935355 AA
1 AA
8935357 GATAAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
AATTGAATATTGTTTATAAATT
Found at i:8936964 original size:50 final size:50
Alignment explanation
Indices: 8936905--8937006 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
8936895 TTAGTGGGAT
*
8936905 ATAATCATTTATACCTTAGTCGTTGCTTTCCATACAGGGGTGAATAGTCC
1 ATAATCATTTATACCTTAGTCGTTGCTTTCCATAAAGGGGTGAATAGTCC
8936955 ATAATCATTTATACCTTAGTCGTTGCTTTCCATAAAGGGGTGAATAGTCC
1 ATAATCATTTATACCTTAGTCGTTGCTTTCCATAAAGGGGTGAATAGTCC
8937005 AT
1 AT
8937007 CACCGTCAGC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (50 bp):
ATAATCATTTATACCTTAGTCGTTGCTTTCCATAAAGGGGTGAATAGTCC
Found at i:8937681 original size:27 final size:27
Alignment explanation
Indices: 8937633--8937780 Score: 149
Period size: 27 Copynumber: 5.5 Consensus size: 27
8937623 TAAAGTACAT
*
8937633 CACAAAGGCATTCC-CTTCATAGATTGC
1 CACAAAGGC-TTCCTTTTCATAGATTGC
* * * *
8937660 CATAGAGGCTTCCTTTTTATAGATAGC
1 CACAAAGGCTTCCTTTTCATAGATTGC
*
8937687 CACAAAGGCTTCC-ATTCAATAGATTGC
1 CACAAAGGCTTCCTTTTC-ATAGATTGC
* * * *
8937714 CAC-AAGAACTTTCTTTTCATAAATCGC
1 CACAAAG-GCTTCCTTTTCATAGATTGC
8937741 CACAAAGGCTTCCTTTTCATAGATTGC
1 CACAAAGGCTTCCTTTTCATAGATTGC
*
8937768 AACAAAGGCTTCC
1 CACAAAGGCTTCC
8937781 ATTTACTAAT
Statistics
Matches: 96, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
26 9 0.09
27 81 0.84
28 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CACAAAGGCTTCCTTTTCATAGATTGC
Found at i:8953380 original size:11 final size:11
Alignment explanation
Indices: 8953364--8953397 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
8953354 GGCTATAACA
8953364 TCCATTTCATT
1 TCCATTTCATT
8953375 TCCATTTCCATT
1 TCCATTT-CATT
*
8953387 TTCATTTCATT
1 TCCATTTCATT
8953398 CTCATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (11 bp):
TCCATTTCATT
Found at i:8953397 original size:17 final size:17
Alignment explanation
Indices: 8953364--8953415 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
8953354 GGCTATAACA
8953364 TCCA-TTTCATTTCCATT
1 TCCATTTTCATTT-CATT
8953381 TCCATTTTCATTTCA-T
1 TCCATTTTCATTTCATT
**
8953397 TCTCATTTAAATTTCATT
1 TC-CATTTTCATTTCATT
8953415 T
1 T
8953416 TCGTAGTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 3 0.10
17 17 0.57
18 10 0.33
ACGTcount: A:0.21, C:0.23, G:0.00, T:0.56
Consensus pattern (17 bp):
TCCATTTTCATTTCATT
Found at i:8954647 original size:21 final size:21
Alignment explanation
Indices: 8954623--8954665 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8954613 ACCTTTTCTA
8954623 AAGTTAAAAGTCAAAACAATT
1 AAGTTAAAAGTCAAAACAATT
*
8954644 AAGTTAAAAGTCAAAACCATT
1 AAGTTAAAAGTCAAAACAATT
8954665 A
1 A
8954666 TATTGTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.56, C:0.12, G:0.09, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGTCAAAACAATT
Found at i:8954931 original size:45 final size:45
Alignment explanation
Indices: 8954867--8954957 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
8954857 CACCTAAAAT
8954867 TTTAGGTCAGATTGCATGGTAGTAAACACACGGGTAGAGACACGG
1 TTTAGGTCAGATTGCATGGTAGTAAACACACGGGTAGAGACACGG
*
8954912 TTTAGGTTAGATTGCATGGTAGTAAACACACGGGTAGAGACACGG
1 TTTAGGTCAGATTGCATGGTAGTAAACACACGGGTAGAGACACGG
8954957 T
1 T
8954958 CATGAGTCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (45 bp):
TTTAGGTCAGATTGCATGGTAGTAAACACACGGGTAGAGACACGG
Found at i:8957437 original size:50 final size:50
Alignment explanation
Indices: 8957383--8957819 Score: 319
Period size: 50 Copynumber: 8.7 Consensus size: 50
8957373 ACTTATTCAT
*
8957383 CACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTA
* * * * * * * *
8957433 CACATAATAGCTTGTACTTAGTTCTACACACT-TGACTTATCCATTTGATA
1 CACATAGTAGCCTGCACTTAGTACTACACA-TGTGACCTATCAATCTGGTA
* * * ** * *
8957483 CACGTAGTAGCCTGCACTTAGTACTACACACGTAATCGAAGTTAAT-GGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTA
** * * ** *
8957534 TGCATAGTAGCTTGCACTTAGTGCTACACATGCAACCTATCAATCCGGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTA
* * * **
8957584 CACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTA
* * * * *
8957634 CACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAACTATC-GAGTA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--ATCAATCTG-GTA
** * * *
8957685 CGTATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGT-
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTA
* * * * * * **
8957734 CACGTAGTAGCCCGCACTTAGAACTACACACGTGACCTA-AAACTATTTTAAA
1 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA-TCTGGT--A
* *
8957786 CACATAGTAGCCTGCACATAGTACTATACATGTG
1 CACATAGTAGCCTGCACTTAGTACTACACATGTG
8957820 TTCTCACAAC
Statistics
Matches: 297, Mismatches: 76, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
48 2 0.01
49 39 0.13
50 152 0.51
51 72 0.24
52 32 0.11
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
CACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTA
Found at i:8957659 original size:151 final size:151
Alignment explanation
Indices: 8957385--8957811 Score: 545
Period size: 151 Copynumber: 2.8 Consensus size: 151
8957375 TTATTCATCA
* * *
8957385 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAATAGCTTGTAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCAC
* * * * *
8957450 TTAGTTCTACACACTTGACTTATCCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACG
66 TTAGTACTACACACGTGACCTAACCATTTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
** * *
8957515 TAATCGAAGTTAAT-GGGTATG
131 TAATCGAAACT-ATCGAGTACG
* * * *
8957536 CATAGTAGCTTGCACTTAGTGCTACACATGCAACCTATCAATCCGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCAC
*
8957601 TTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
66 TTAGTACTACACACGTGACCTAACCATTTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
* *
8957666 TGATTGAAACTATCGAGTACG
131 TAATCGAAACTATCGAGTACG
* * * * *
8957687 TATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGT-CACGTAGTAGCCCGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCAC
* * * *
8957751 TTAGAACTACACACGTGACCTAAAACTATTTTAA-ACACATAGTAGCCTGCACATAGTACTA
66 TTAGTACTACACACGTGACCT--AACCA-TTTAATACACGTAGTAGCCTGCACTTAGTACTA
8957812 TACATGTGTT
Statistics
Matches: 239, Mismatches: 33, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
150 37 0.15
151 169 0.71
152 29 0.12
153 4 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (151 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCCTGCAC
TTAGTACTACACACGTGACCTAACCATTTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
TAATCGAAACTATCGAGTACG
Found at i:8957797 original size:101 final size:101
Alignment explanation
Indices: 8957583--8957817 Score: 285
Period size: 101 Copynumber: 2.3 Consensus size: 101
8957573 TCAATCCGGT
* * * *
8957583 ACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTG
1 ACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAATACACGTAGTAGCCCG
* * * *
8957648 CACTTAGTACTACACACGTGATTGAAACTATCGAGT
66 CACTTAGAACTACACACGTGACTAAAACTATCGAGA
** * **
8957684 ACGTATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGT-CACGTAGTAGCCCG
1 ACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAATACACGTAGTAGCCCG
**
8957748 CACTTAGAACTACACACGTGACCTAAAACTATTTTA-A
66 CACTTAGAACTACACACGTGA-CTAAAACTA-TCGAGA
* *
8957785 ACACATAGTAGCCTGCACATAGTACTATACATG
1 ACACATAGTAGCCTGCACTTAGTACTACACATG
8957818 TGTTCTCACA
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
100 33 0.29
101 77 0.69
102 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (101 bp):
ACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTAATACACGTAGTAGCCCG
CACTTAGAACTACACACGTGACTAAAACTATCGAGA
Found at i:8971123 original size:28 final size:29
Alignment explanation
Indices: 8971009--8971123 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
8970999 GTGAGCATGA
* * *
8971009 ATATGAATGTGA-CTGGGCCTAACGAGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
8971037 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
8971066 ATAT-ACAGGTGATTTGGGCCTAATGTGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
8971095 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
8971123 A
1 A
8971124 GATACAAGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:8974447 original size:31 final size:31
Alignment explanation
Indices: 8974400--8974515 Score: 171
Period size: 31 Copynumber: 3.8 Consensus size: 31
8974390 CAATCTCAGT
*
8974400 ATAT-ACTGGGTCGAAGCCTTTACATTATTC
1 ATATCACTGGGCCGAAGCCTTTACATTATTC
* *
8974430 ATATCACTGGGCTGAAGCCTTTTCATTATTC
1 ATATCACTGGGCCGAAGCCTTTACATTATTC
*
8974461 ATATCACTGGGCCGAAGCCTTTTCATTATTC
1 ATATCACTGGGCCGAAGCCTTTACATTATTC
* *
8974492 GTATCACTAGGCCGAAGCCTTTAC
1 ATATCACTGGGCCGAAGCCTTTAC
8974516 TGTAACATTA
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 4 0.05
31 74 0.95
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (31 bp):
ATATCACTGGGCCGAAGCCTTTACATTATTC
Found at i:8974769 original size:26 final size:25
Alignment explanation
Indices: 8974733--8974828 Score: 140
Period size: 26 Copynumber: 3.8 Consensus size: 25
8974723 CTCTTTTAAT
* *
8974733 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGC-AAAGCCCTTTTCGGTA
8974759 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTCGGTA
8974785 AACTGGGGCAAAGCCCTTTTCGGT-
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
8974809 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
8974829 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
24 19 0.28
25 15 0.22
26 33 0.49
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:8979722 original size:29 final size:28
Alignment explanation
Indices: 8979667--8979809 Score: 155
Period size: 28 Copynumber: 5.0 Consensus size: 28
8979657 ATGAGCATGA
* * *
8979667 ATATGAATGTTACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* *
8979695 ATATAAATGTTATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
8979724 ATAT-ACAGGTGATTTTGGCCTAATGGGCC
1 ATATGA-ATGTGA-TTGGGCCTAATGGGCC
*
8979753 ATATGAATATGATTGGGCCTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
8979781 ATATGAATATGATT-GGCCTTAATGGGCC
1 ATATGAATGTGATTGGGCC-TAATGGGCC
8979809 A
1 A
8979810 GATACAAGTA
Statistics
Matches: 102, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
27 4 0.04
28 51 0.50
29 46 0.45
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:8979780 original size:28 final size:29
Alignment explanation
Indices: 8979680--8979809 Score: 151
Period size: 29 Copynumber: 4.6 Consensus size: 29
8979670 TGAATGTTAC
* * * *
8979680 TGGGCCTAACGGGCCATATAAATGTTATT
1 TGGGCCTAATGGGCCATATGAATATGATT
**
8979709 TGGGCCTAATGGGCCATAT-ACAGGTGATT
1 TGGGCCTAATGGGCCATATGA-ATATGATT
*
8979738 TTGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATGAATATGATT
8979766 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATGAATATGATT
8979794 T-GGCCTTAATGGGCCA
1 TGGGCC-TAATGGGCCA
8979810 GATACAAGTA
Statistics
Matches: 91, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 4 0.04
28 40 0.44
29 46 0.51
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATGAATATGATT
Found at i:8979794 original size:57 final size:56
Alignment explanation
Indices: 8979682--8979809 Score: 152
Period size: 57 Copynumber: 2.2 Consensus size: 56
8979672 AATGTTACTG
* * * *
8979682 GGCCTAACGGGCCATATAAATGTTATTTGGGCCTAATGGGCCATATACAGGTGATTTT
1 GGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCATATACAGATGA--TT
* *
8979740 GGCCTAATGGGCCATATGAATATGA-TTGGGCCTAATGGGCCATATGA-ATATGATT
1 GGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCATAT-ACAGATGATT
8979795 GGCCTTAATGGGCCA
1 GGCC-TAATGGGCCA
8979810 GATACAAGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
55 6 0.10
56 10 0.16
57 24 0.39
58 22 0.35
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (56 bp):
GGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCATATACAGATGATT
Found at i:8994557 original size:30 final size:30
Alignment explanation
Indices: 8994507--8994578 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 30
8994497 TAGGTATATA
8994507 TATATGAAATACATGGAAAT-GAT-ATTACATG
1 TATATG-AA-ACATGGAAATGGATGA-TACATG
8994538 ATATATTGAAACAT-GAAATGGATGATACATG
1 -TATA-TGAAACATGGAAATGGATGATACATG
8994569 TATATGAAAC
1 TATATGAAAC
8994579 TTGCTTAGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
29 6 0.16
30 9 0.24
31 13 0.35
32 7 0.19
33 2 0.05
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.31
Consensus pattern (30 bp):
TATATGAAACATGGAAATGGATGATACATG
Found at i:8995788 original size:21 final size:20
Alignment explanation
Indices: 8995748--8995789 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
8995738 CCCCTGTAGC
*
8995748 TTTGAAAATTTTTATTGTTT
1 TTTGAAAATTTTTATAGTTT
8995768 TTTGAAAAATTTTCTA-AGTTT
1 TTTG-AAAATTTT-TATAGTTT
8995789 T
1 T
8995790 CAATTTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 13 0.68
22 2 0.11
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTGAAAATTTTTATAGTTT
Found at i:9003275 original size:20 final size:21
Alignment explanation
Indices: 9003250--9003288 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
9003240 CATAACTATA
9003250 TATGTATGCATGAT-TGTATT
1 TATGTATGCATGATATGTATT
*
9003270 TATGTATGGATGATATGTA
1 TATGTATGCATGATATGTA
9003289 AAGAAATACG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (21 bp):
TATGTATGCATGATATGTATT
Found at i:9009188 original size:18 final size:18
Alignment explanation
Indices: 9009165--9009212 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
9009155 TCGAGTTAAA
9009165 TTAATCGAATTATTCGAG
1 TTAATCGAATTATTCGAG
*
9009183 TTAATCGAGTTATTCGAG
1 TTAATCGAATTATTCGAG
*
9009201 TCAACTCGAATT
1 TTAA-TCGAATT
9009213 TTTTTTCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (18 bp):
TTAATCGAATTATTCGAG
Found at i:9010412 original size:23 final size:22
Alignment explanation
Indices: 9010369--9010413 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
9010359 GTTAATTTGA
**
9010369 ATTGTATGTATATGATTGTATT
1 ATTGTATGTATATGAAAGTATT
9010391 ATTGTGATGTATATGAAAGTATT
1 ATTGT-ATGTATATGAAAGTATT
9010414 CACATATCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (22 bp):
ATTGTATGTATATGAAAGTATT
Found at i:9016765 original size:43 final size:43
Alignment explanation
Indices: 9016658--9016758 Score: 134
Period size: 43 Copynumber: 2.3 Consensus size: 43
9016648 GAGATGTGGC
*
9016658 TACATGTAAGACCATGTCTGGTACATTGGCATTGTATTGTGAT
1 TACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGAT
*
9016701 TACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TATT-TGAT
1 TACATGTAAGACCATGTCTGGGACATTGGCAT--TGTATTGTGAT
* *
9016744 TTCATGTAAAACCAT
1 TACATGTAAGACCAT
9016759 AGCTGGGCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
43 46 0.90
44 4 0.08
45 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (43 bp):
TACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGAT
Found at i:9021160 original size:23 final size:22
Alignment explanation
Indices: 9021117--9021161 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
9021107 GTTAATTTGA
* **
9021117 ATTGTATGTATGTGATTGTATT
1 ATTGTATGTATATGAAAGTATT
9021139 ATTGTCATGTATATGAAAGTATT
1 ATTGT-ATGTATATGAAAGTATT
9021162 CACATACCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (22 bp):
ATTGTATGTATATGAAAGTATT
Found at i:9028068 original size:43 final size:43
Alignment explanation
Indices: 9027963--9028072 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 43
9027953 GATTTGAGAT
* * * * * *
9027963 TTACATGTAAGACTATGTCTGAGATATAGGCATCGTATATGAT
1 TTACATGTAAGACCACGTCTGGGATAGAGGCATCGAATATGAA
*
9028006 TTTC-TGTAAGACC-CTGTCTGGGATAGAGGCATC-AATACTGAA
1 TTACATGTAAGACCAC-GTCTGGGATAGAGGCATCGAATA-TGAA
9028048 TTACATGTAAGACCACGTCTGGGAT
1 TTACATGTAAGACCACGTCTGGGAT
9028073 GTCGGCATTG
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
41 3 0.05
42 30 0.55
43 21 0.38
44 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCACGTCTGGGATAGAGGCATCGAATATGAA
Found at i:9036829 original size:26 final size:25
Alignment explanation
Indices: 9036799--9036856 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
9036789 GTCAAATTGT
*
9036799 AATTTTATTTTCA-CTATTATATTTAA
1 AATTTTATTTTAATCT-TTATATTT-A
* *
9036825 AATTTAATTTTAATCTTTATATTTT
1 AATTTTATTTTAATCTTTATATTTA
9036850 AATTTTA
1 AATTTTA
9036857 CATAATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 6 0.22
26 19 0.70
27 2 0.07
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.60
Consensus pattern (25 bp):
AATTTTATTTTAATCTTTATATTTA
Found at i:9037106 original size:3 final size:3
Alignment explanation
Indices: 9037098--9037125 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
9037088 TAACATTTCG
9037098 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9037126 CCCTTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:9042864 original size:13 final size:13
Alignment explanation
Indices: 9042846--9042892 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
9042836 AAAAACCTGG
9042846 GTTTTTGAAACTT
1 GTTTTTGAAACTT
*
9042859 GTTTTTAAAACTTGT
1 GTTTTTGAAAC-T-T
*
9042874 GTTTTTGAAACCT
1 GTTTTTGAAACTT
9042887 GTTTTT
1 GTTTTT
9042893 AAAAATCAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 17 0.59
14 1 0.03
15 11 0.38
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55
Consensus pattern (13 bp):
GTTTTTGAAACTT
Found at i:9042869 original size:28 final size:28
Alignment explanation
Indices: 9042837--9042896 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
9042827 ATTGAACTTA
*
9042837 AAAACCTGGGTTTTTGAAACTTGTTTTT
1 AAAACCTGGGTTTTTGAAACCTGTTTTT
* *
9042865 AAAACTTGTGTTTTTGAAACCTGTTTTT
1 AAAACCTGGGTTTTTGAAACCTGTTTTT
9042893 AAAA
1 AAAA
9042897 ATCAGCCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (28 bp):
AAAACCTGGGTTTTTGAAACCTGTTTTT
Found at i:9047754 original size:22 final size:22
Alignment explanation
Indices: 9047711--9047760 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
9047701 TCTTAAAAAG
*
9047711 ATTTTTTTAGAAAAGGGGATTA
1 ATTTTTTTAGAAAAGGGAATTA
* *
9047733 TTTTTTTTAGTAAAA-GTAATTA
1 ATTTTTTTAG-AAAAGGGAATTA
9047755 ATTTTT
1 ATTTTT
9047761 AAAAAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (22 bp):
ATTTTTTTAGAAAAGGGAATTA
Found at i:9054034 original size:68 final size:63
Alignment explanation
Indices: 9053887--9054066 Score: 166
Period size: 68 Copynumber: 2.8 Consensus size: 63
9053877 ATATAGTTCG
* *
9053887 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
* * *
9053950 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGCGACCTAGC--CA--AT-ATATC
*
9054013 TTGTA
59 TCGTA
* ** * ** *
9054018 GCTCTCTTGTACACATGATGTGCACTCAGAACCATACATGTGACCTAGC
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGC
9054067 TACATACTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
62 1 0.01
63 42 0.44
64 1 0.01
65 2 0.02
67 3 0.03
68 45 0.47
69 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
Found at i:9057233 original size:27 final size:27
Alignment explanation
Indices: 9057193--9057260 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
9057183 AGCTTGTTAG
9057193 GCCCACTGGCGATCCCTTCTTCGCCAA
1 GCCCACTGGCGATCCCTTCTTCGCCAA
* *
9057220 GTCCACTGGCGATCCCTTCTTTGCCAA
1 GCCCACTGGCGATCCCTTCTTCGCCAA
9057247 GCCCACTGGCGATC
1 GCCCACTGGCGATC
9057261 ATGGTTCGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.15, C:0.41, G:0.21, T:0.24
Consensus pattern (27 bp):
GCCCACTGGCGATCCCTTCTTCGCCAA
Found at i:9059928 original size:46 final size:47
Alignment explanation
Indices: 9059800--9060012 Score: 163
Period size: 46 Copynumber: 4.5 Consensus size: 47
9059790 ATGTTGATTC
* *
9059800 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATCTCCGT-GTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGTAGTCGATG
* *
9059849 CCATGTCCCGGACATGGTCTTACACTGAC--ACATCTCGTAGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGTCGATG
* * *
9059895 TATGTCCTAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GTCGATG
* * * * * *
9059941 CATGTCCCCGACAT-GTCTTAAACTAGCTCT-CATTTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGTA-GTCGATG
* *
9059987 CCATGTGCTAGACATGGTCTTACACT
1 -CATGTCCCAGACATGGTCTTACACT
9060013 AGCACACAAA
Statistics
Matches: 135, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 63 0.47
47 12 0.09
48 9 0.07
50 24 0.18
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGTCGATG
Found at i:9065800 original size:27 final size:27
Alignment explanation
Indices: 9065770--9065969 Score: 267
Period size: 27 Copynumber: 7.4 Consensus size: 27
9065760 TGGATAAGTT
* *
9065770 GTAGAATTACCAAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
9065797 GTAGAATTACCGAAATACCCATGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
** * *
9065824 GTAGAATTATTGAAGTACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
9065851 GTAGAATTACCGAAATACTCC-TGTAGG
1 GTAGAATTACCGAAATAC-CCTTGTAGG
* *
9065878 ATAGAATTACCGAAATACCCTTTTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
9065905 GTAGAAATACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
9065932 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
9065959 GTAAAATTACC
1 GTAGAATTACC
9065970 ATTTTGCCTC
Statistics
Matches: 152, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 148 0.97
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:9076455 original size:46 final size:49
Alignment explanation
Indices: 9076222--9076494 Score: 235
Period size: 46 Copynumber: 5.7 Consensus size: 49
9076212 AGGGTATAAT
* ** **
9076222 GCCGATGCCATGTCCCAGACATGGTCTTACA-TAGACTATTGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTACATCTCGAG
* * ** * * * * *
9076271 GCTGACGCCATGTCTTAGACATGATCTTACACTGGATCTCACATCTCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATCTCGAG
*
9076321 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCG-AG
* * * *
9076367 ACCGATG-CATGTCCCAGACAT-GTCTTTCACT-GGTTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGAG
* *
9076413 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTA-ATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGAG
* *
9076459 GCCAATGCCGTGTCCCAGACATGGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
9076495 GTACAAATGA
Statistics
Matches: 182, Mismatches: 33, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
44 10 0.05
45 15 0.08
46 62 0.34
47 18 0.10
48 14 0.08
49 29 0.16
50 34 0.19
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGAG
Found at i:9077913 original size:33 final size:33
Alignment explanation
Indices: 9077876--9077982 Score: 133
Period size: 33 Copynumber: 3.2 Consensus size: 33
9077866 ATCCCTCTAG
*
9077876 CACACCAATGCTCAGAAGAGCTAATCCAACCAA
1 CACACCAATGCTCATAAGAGCTAATCCAACCAA
* * * **
9077909 CACACGAATGCTTATACGAGCTAATCCAACCTT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAA
* * *
9077942 CACACTAGTGCTCATAAGAGCTAGTCCAACCAA
1 CACACCAATGCTCATAAGAGCTAATCCAACCAA
9077975 CACACCAA
1 CACACCAA
9077983 ACGGAGAGTA
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.38, C:0.33, G:0.12, T:0.17
Consensus pattern (33 bp):
CACACCAATGCTCATAAGAGCTAATCCAACCAA
Found at i:9092293 original size:40 final size:40
Alignment explanation
Indices: 9092236--9092314 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
9092226 CCTAAATTGA
*
9092236 TAGCTAAAAGTGTCAAATAGCTAGAGAATAAAGATTGGGT
1 TAGCTAAAAGTGCCAAATAGCTAGAGAATAAAGATTGGGT
*
9092276 TAGCTAAAAGTGCCAAATAGCTATAGAATAAAGATTGGG
1 TAGCTAAAAGTGCCAAATAGCTAGAGAATAAAGATTGGG
9092315 GGTCTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (40 bp):
TAGCTAAAAGTGCCAAATAGCTAGAGAATAAAGATTGGGT
Found at i:9094391 original size:30 final size:30
Alignment explanation
Indices: 9094355--9094412 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9094345 CACGGACAGA
* *
9094355 GACACGGTCGTATGCCTCGGCCGTGTGATG
1 GACACGGGCCTATGCCTCGGCCGTGTGATG
* *
9094385 GACACGGGCCTGTGCCTTGGCCGTGTGA
1 GACACGGGCCTATGCCTCGGCCGTGTGA
9094413 CATTTTGGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.28, G:0.38, T:0.22
Consensus pattern (30 bp):
GACACGGGCCTATGCCTCGGCCGTGTGATG
Found at i:9100542 original size:30 final size:29
Alignment explanation
Indices: 9100486--9100542 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
9100476 TTTTTAAGCC
**
9100486 TAGGGGAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGAAAATGGTCATTTTACCAAAGTT
*
9100515 TAGGGGCAAAATGGTTATTTTACCAAAG
1 TAGGGG-AAAATGGTCATTTTACCAAAG
9100543 ATATGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (29 bp):
TAGGGGAAAATGGTCATTTTACCAAAGTT
Found at i:9102340 original size:40 final size:40
Alignment explanation
Indices: 9102281--9102501 Score: 270
Period size: 40 Copynumber: 5.5 Consensus size: 40
9102271 ACCCAAGTAT
* *
9102281 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
9102320 CTTCGGGTCTTAGTCCGGATATAGTCACTAGAACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
9102360 CTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
9102400 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
9102440 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
9102480 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
9102502 CATTTGAATA
Statistics
Matches: 156, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 141 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:9110612 original size:39 final size:39
Alignment explanation
Indices: 9110408--9110630 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
9110398 TTGAATGCTG
* * * * * *
9110408 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
9110448 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
9110488 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
9110528 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
9110568 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
9110607 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
9110631 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:9110650 original size:79 final size:80
Alignment explanation
Indices: 9110488--9110665 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
9110478 AGATACAAGT
* * * *
9110488 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
9110553 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
9110568 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
9110632 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
9110647 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
9110666 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:9121307 original size:16 final size:18
Alignment explanation
Indices: 9121272--9121308 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
9121262 ATCATCCATT
*
9121272 TACTATTATATATGCTAA
1 TACTATAATATATGCTAA
9121290 TACTATAAT-TAT-CTAA
1 TACTATAATATATGCTAA
9121306 TAC
1 TAC
9121309 CCATCACCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 8 0.44
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.43
Consensus pattern (18 bp):
TACTATAATATATGCTAA
Found at i:9132118 original size:40 final size:39
Alignment explanation
Indices: 9132022--9132198 Score: 186
Period size: 40 Copynumber: 4.6 Consensus size: 39
9132012 TATTCGAATG
* * * *
9132022 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTA-CG-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGCT
* *
9132059 A-ATTCC-GACTAAGATCCGAAGGCATTTGTGCGAGTTGCT
1 ATA-TCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGCT
* *
9132098 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-CT
*
9132138 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGCT
9132178 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
9132199 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
36 23 0.19
37 4 0.03
38 2 0.02
39 20 0.17
40 67 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGCT
Found at i:9132175 original size:80 final size:76
Alignment explanation
Indices: 9132022--9132198 Score: 225
Period size: 80 Copynumber: 2.3 Consensus size: 76
9132012 TATTCGAATG
* * * *
9132022 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTACGTAATTCCGACTAAGATCCGAAGGCATTTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTACGTAATTCCGACTAAGACCCGAAGGCATTTG
9132087 TGCGAGTTGCT
66 TGCGAGTTGCT
*
9132098 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTACGT-A--AT-TCC-GACTAAGACCCGAAGGC
*
9132162 ATTTGTGCGAGTTGTT
61 ATTTGTGCGAGTTGCT
9132178 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
9132199 ATACTTGGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
75 2 0.02
76 32 0.36
78 3 0.03
79 16 0.18
80 36 0.40
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (76 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTACGTAATTCCGACTAAGACCCGAAGGCATTTG
TGCGAGTTGCT
Found at i:9132464 original size:22 final size:22
Alignment explanation
Indices: 9132424--9132465 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
9132414 GAATGTGCAT
*
9132424 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
9132446 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
9132466 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:9135242 original size:40 final size:40
Alignment explanation
Indices: 9135129--9135349 Score: 193
Period size: 40 Copynumber: 5.6 Consensus size: 40
9135119 CTCCTCGTTC
* * * *
9135129 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
* *
9135168 AATGCCTTC-GGACTTAACCC-GATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
* *
9135206 AATGCCTTCGGGACTTTACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
* * * *
9135246 AAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCACA
** * * * * *
9135286 AATGCCTTC-GGATCTTAGTCTGGATATATTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACA
*
9135327 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
9135350 CAGCATTCAA
Statistics
Matches: 148, Mismatches: 26, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
37 14 0.09
38 18 0.12
39 23 0.16
40 79 0.53
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
Done.