Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 292 of 332
Found at i:97200385 original size:12 final size:12
Alignment explanation
Indices: 97200368--97200395 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97200358 TGTTACCCTT
97200368 AATATATTATAA
1 AATATATTATAA
97200380 AATATATTATAA
1 AATATATTATAA
97200392 AATA
1 AATA
97200396 AAATAAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AATATATTATAA
Found at i:97215675 original size:19 final size:19
Alignment explanation
Indices: 97215616--97215692 Score: 64
Period size: 19 Copynumber: 3.8 Consensus size: 19
97215606 AGTATTTGTT
*
97215616 AATAATAAAGATTATTGAA
1 AATAATAAAAATTATTGAA
* * *
97215635 AATATTTAATTAAAATATTTGAT
1 AATA-ATAA--AAATTA-TTGAA
97215658 AATAATAAAAATTATTGAA
1 AATAATAAAAATTATTGAA
* *
97215677 AATATTAAAATTTATT
1 AATAATAAAAATTATT
97215693 AATATTATCT
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
19 22 0.49
20 8 0.18
22 7 0.16
23 8 0.18
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
AATAATAAAAATTATTGAA
Found at i:97224326 original size:28 final size:29
Alignment explanation
Indices: 97224286--97224345 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
97224276 GTTTAATCGA
*
97224286 ATTTTAAATTTTA-ATAAAATTAATATAT
1 ATTTTAAATTTTATATAAAAGTAATATAT
* *
97224314 ATTTT-AATATTTATATCAAAGTATTATAT
1 ATTTTAAAT-TTTATATAAAAGTAATATAT
97224343 ATT
1 ATT
97224346 ATTATAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 3 0.11
28 9 0.33
29 15 0.56
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (29 bp):
ATTTTAAATTTTATATAAAAGTAATATAT
Found at i:97225402 original size:16 final size:16
Alignment explanation
Indices: 97225383--97225423 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
97225373 GTTTAATTAA
97225383 TTTAAGGTTATGGCTT
1 TTTAAGGTTATGGCTT
* *
97225399 TTTAAGATTATGGTTT
1 TTTAAGGTTATGGCTT
*
97225415 TTTAGGGTT
1 TTTAAGGTT
97225424 TAGAATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.54
Consensus pattern (16 bp):
TTTAAGGTTATGGCTT
Found at i:97225936 original size:27 final size:27
Alignment explanation
Indices: 97225905--97225961 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
97225895 TTTTAGGGTT
97225905 AATTCATTAAATTAACTATTAATTTTA
1 AATTCATTAAATTAACTATTAATTTTA
97225932 AATTCATTAAATTAACTATTAATTTTA
1 AATTCATTAAATTAACTATTAATTTTA
97225959 AAT
1 AAT
97225962 ACTAAATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (27 bp):
AATTCATTAAATTAACTATTAATTTTA
Found at i:97228822 original size:34 final size:35
Alignment explanation
Indices: 97228759--97228831 Score: 80
Period size: 34 Copynumber: 2.1 Consensus size: 35
97228749 ATTGTCGTAA
**
97228759 AAAACTATGTTGTATTATTTATATTTTATT-AAAT
1 AAAACTATGTTGTATTATCAATATTTTATTAAAAT
97228793 AAAACTATGTTGTATTA-CAAT-TGTCTTATTCAAAAT
1 AAAACTATGTTGTATTATCAATAT-T-TTATT-AAAAT
97228829 AAA
1 AAA
97228832 TTTTATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
32 1 0.03
33 3 0.09
34 22 0.67
36 7 0.21
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (35 bp):
AAAACTATGTTGTATTATCAATATTTTATTAAAAT
Found at i:97229883 original size:7 final size:7
Alignment explanation
Indices: 97229871--97229906 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
97229861 TATTACTTAT
97229871 ATACATA
1 ATACATA
97229878 ATACATA
1 ATACATA
97229885 ATACATA
1 ATACATA
97229892 ATACATA
1 ATACATA
97229899 ATACATA
1 ATACATA
97229906 A
1 A
97229907 GACTAAATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:97230866 original size:48 final size:49
Alignment explanation
Indices: 97230813--97230921 Score: 118
Period size: 48 Copynumber: 2.3 Consensus size: 49
97230803 TAAAATTGAA
*
97230813 TAAATTATTAA-TACAAACATCATAAATGAA-AAAAAATCAAGCAGTATTG
1 TAAATT-TTAATTACAAACAT-ATAAATGAATAAAAAATCAAACAGTATTG
* ** * *
97230862 -AAATTTTAATTATAATGATATAAATGAATAAAATATCAAATAGTATTG
1 TAAATTTTAATTACAAACATATAAATGAATAAAAAATCAAACAGTATTG
97230910 TAAA-TTTAATTA
1 TAAATTTTAATTA
97230922 AATTTGCATA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
47 13 0.25
48 35 0.69
49 3 0.06
ACGTcount: A:0.53, C:0.06, G:0.07, T:0.34
Consensus pattern (49 bp):
TAAATTTTAATTACAAACATATAAATGAATAAAAAATCAAACAGTATTG
Found at i:97230933 original size:48 final size:47
Alignment explanation
Indices: 97230833--97230966 Score: 139
Period size: 48 Copynumber: 2.8 Consensus size: 47
97230823 ATACAAACAT
* **
97230833 CATAAATGAAAAAAAATCAAGCAGTATTGAAATTTTAATTATAATGA
1 CATAAATGAAAAAATATCAAATAGTATTGAAATTTTAATTATAATGA
*
97230880 TATAAATGAATAAAATATCAAATAGTATTGTAAA-TTTAATTA-AATTTG-
1 CATAAATGAA-AAAATATCAAATAGTATTG-AAATTTTAATTATAA--TGA
* * *
97230928 CATAAATTAAAAAAATATCGAATAGTATTAAAATTTTAA
1 CATAAA-TGAAAAAATATCAAATAGTATTGAAATTTTAA
97230967 AATTATCACT
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
47 14 0.19
48 51 0.70
49 8 0.11
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.34
Consensus pattern (47 bp):
CATAAATGAAAAAATATCAAATAGTATTGAAATTTTAATTATAATGA
Found at i:97231087 original size:16 final size:16
Alignment explanation
Indices: 97231063--97231096 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97231053 GGATTTTTTT
* *
97231063 AATTTAAAAAAAATTA
1 AATTCAAAAAAAAATA
97231079 AATTCAAAAAAAAATA
1 AATTCAAAAAAAAATA
97231095 AA
1 AA
97231097 CAAAGAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AATTCAAAAAAAAATA
Found at i:97232252 original size:18 final size:18
Alignment explanation
Indices: 97232224--97232292 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 18
97232214 AATGTAAAAA
*
97232224 AAAAATCATAAGAAGTATT
1 AAAAATCATAA-AAATATT
*
97232243 AAAAAT-ATAAATACTATT
1 AAAAATCATAAA-AATATT
*
97232261 AAAAA-GA-AAAAATATT
1 AAAAATCATAAAAATATT
97232277 AAAAATCATAAAAATA
1 AAAAATCATAAAAATA
97232293 ATTTTAAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
16 10 0.23
17 5 0.12
18 22 0.51
19 6 0.14
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (18 bp):
AAAAATCATAAAAATATT
Found at i:97232305 original size:10 final size:10
Alignment explanation
Indices: 97232267--97232323 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
97232257 TATTAAAAAG
97232267 AAAAAA-TAT
1 AAAAAATTAT
* *
97232276 TAAAAATCAT
1 AAAAAATTAT
*
97232286 AAAAATAATTTT
1 -AAAA-AATTAT
*
97232298 AAAAAATTAC
1 AAAAAATTAT
97232308 AAAAAATTAT
1 AAAAAATTAT
97232318 AAAAAA
1 AAAAAA
97232324 ATTTAAGTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
9 5 0.14
10 21 0.57
11 7 0.19
12 4 0.11
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:97235386 original size:30 final size:30
Alignment explanation
Indices: 97235352--97235417 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 30
97235342 TAGTTAAAAT
* *
97235352 AAGTTACAATTTGA-TCATTGAATTATTCAA
1 AAGTTAC-ATTTAAGTCATTGAACTATTCAA
* *
97235382 AAGTTTTCATTTAAGTTATTGAACTATTCAA
1 AAG-TTACATTTAAGTCATTGAACTATTCAA
97235413 AAGTT
1 AAGTT
97235418 TTTATTTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
30 10 0.33
31 20 0.67
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (30 bp):
AAGTTACATTTAAGTCATTGAACTATTCAA
Found at i:97235403 original size:31 final size:31
Alignment explanation
Indices: 97235368--97235430 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
97235358 CAATTTGATC
*
97235368 ATTGAATTATTCAAAAGTTTTCATTTAAGTT
1 ATTGAACTATTCAAAAGTTTTCATTTAAGTT
*
97235399 ATTGAACTATTCAAAAGTTTTTATTTAAGTT
1 ATTGAACTATTCAAAAGTTTTCATTTAAGTT
97235430 A
1 A
97235431 CTTGTTTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (31 bp):
ATTGAACTATTCAAAAGTTTTCATTTAAGTT
Found at i:97241161 original size:17 final size:17
Alignment explanation
Indices: 97241139--97241172 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97241129 ATCCTTATAT
*
97241139 AAGAAAATAAGCAAATA
1 AAGAAAATAAGAAAATA
*
97241156 AAGAAACTAAGAAAATA
1 AAGAAAATAAGAAAATA
97241173 GAAATATGCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.12, T:0.12
Consensus pattern (17 bp):
AAGAAAATAAGAAAATA
Found at i:97244444 original size:2 final size:2
Alignment explanation
Indices: 97244439--97244499 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
97244429 AAAAAAAAAA
97244439 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
97244481 AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG A
97244500 CAGGTGCTAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:97247108 original size:140 final size:140
Alignment explanation
Indices: 97246856--97247136 Score: 463
Period size: 140 Copynumber: 2.0 Consensus size: 140
97246846 TGGAATTTTC
* * *
97246856 ATTAGTTCTGAAATTTCAATTTTGCGTAGTCCTAAAATATTATGGTATCTATGTATCCATATCCT
1 ATTAGTTCTGAAATTTCAATTTTGCATAGTCCTAAAATATTATGGTATCCATGTATCCATATCCA
* *
97246921 GCTCTCATACTCTTCATAGCCTACTCTACTAGTCCAAAAGTTTAGATGAAAGGAGTCAACCTTGG
66 GCTCTCAGACTCTTCATAGCCTACTCTACTAGTCCAAAAGTTTAGATGAAAGGAGTCAACCTAGG
97246986 ATCAAATCTA
131 ATCAAATCTA
* * * *
97246996 ATTAGTTCTGAAATTTCAATTTTGTATAGTCCTATAATATTATGGTATCCATGTATCCTTATTCA
1 ATTAGTTCTGAAATTTCAATTTTGCATAGTCCTAAAATATTATGGTATCCATGTATCCATATCCA
* *
97247061 GCTCTCAGACTTTTCATAGCCTTCTCTACTAGTCCAAAAGTTTAGATGAAAGGAGTCAACCTAGG
66 GCTCTCAGACTCTTCATAGCCTACTCTACTAGTCCAAAAGTTTAGATGAAAGGAGTCAACCTAGG
97247126 ATCAAATCTA
131 ATCAAATCTA
97247136 A
1 A
97247137 ACTAGAACCC
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
140 130 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (140 bp):
ATTAGTTCTGAAATTTCAATTTTGCATAGTCCTAAAATATTATGGTATCCATGTATCCATATCCA
GCTCTCAGACTCTTCATAGCCTACTCTACTAGTCCAAAAGTTTAGATGAAAGGAGTCAACCTAGG
ATCAAATCTA
Found at i:97250734 original size:23 final size:24
Alignment explanation
Indices: 97250706--97250752 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
97250696 GATAAAAATA
97250706 AATTTTAATTTTATT-TATTTATT
1 AATTTTAATTTTATTATATTTATT
97250729 AATTTTAATTTTATTAATATTTAT
1 AATTTTAATTTTATT-ATATTTAT
97250753 ATTATTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 15 0.68
25 7 0.32
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (24 bp):
AATTTTAATTTTATTATATTTATT
Found at i:97252163 original size:67 final size:67
Alignment explanation
Indices: 97252055--97252184 Score: 197
Period size: 67 Copynumber: 1.9 Consensus size: 67
97252045 CCAACTGGCT
*
97252055 AGTTAGCACCAATTTAAACAACCCCTTTAGCACCAATTTAGGGTTTAAAAAGAAAAAGAAGAATA
1 AGTTAGCACCAATTTAAACAACCCCTTTAACACCAATTTAGGGTTTAAAAAGAAAAAGAAGAATA
97252120 AC
66 AC
* * * * * *
97252122 AGTTAGCACCAATTTAAATAGCCCTTTTAACACCAATTTAGGTTTTAAAAAGAGAAAGGAGAA
1 AGTTAGCACCAATTTAAACAACCCCTTTAACACCAATTTAGGGTTTAAAAAGAAAAAGAAGAA
97252185 GAAGGAGTGT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 56 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.25
Consensus pattern (67 bp):
AGTTAGCACCAATTTAAACAACCCCTTTAACACCAATTTAGGGTTTAAAAAGAAAAAGAAGAATA
AC
Found at i:97253064 original size:42 final size:42
Alignment explanation
Indices: 97253001--97253161 Score: 189
Period size: 42 Copynumber: 3.7 Consensus size: 42
97252991 CTTCGTTTTC
** *
97253001 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
97253044 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
*
97253085 TCGATGCCATAGCCCAGCTATAGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
97253134 TCGATGCCATAGCCCAGCTATGGTCTTA
1 TCGATGCCATAGCCCAGCTATGGTCTTA
97253162 TACGAATCGC
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.61
43 1 0.01
45 2 0.02
48 1 0.01
49 33 0.33
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:97253144 original size:49 final size:48
Alignment explanation
Indices: 97253071--97253253 Score: 176
Period size: 49 Copynumber: 3.8 Consensus size: 48
97253061 TATGGTCTTA
* *
97253071 CACATATTCATATATCGATGCCATAGCCCAGCTATAGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
97253121 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTATACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * * * *
97253169 CGCATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * * *
97253216 CATATATCAC--ACCGATGCCATATCCCAGATATGGTCTT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTT
97253254 GTACGGAAAT
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
46 27 0.23
47 35 0.30
48 12 0.10
49 36 0.31
50 6 0.05
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:97253241 original size:47 final size:46
Alignment explanation
Indices: 97253045--97253253 Score: 162
Period size: 47 Copynumber: 4.5 Consensus size: 46
97253035 TTCACATAAT
* * * *
97253045 GATGCCATAGCCCAGCTATGGTCTTACACA-TATTC-ATAT---ATC
1 GATGCCATAGCCCAGATATGGTCTTATACAGTA-GCAATATCACACC
* * * * *
97253087 GATGCCATAGCCCAGCTATAGTCTTACAC-GTAATCACATATCACATATC
1 GATGCCATAGCCCAGATATGGTCTTATACAGT-AGCA-ATATCAC--ACC
* * * * *
97253136 GATGCCATAGCCCAGCTATGGTCTTATACGAATCGC-ATATCTCACT
1 GATGCCATAGCCCAGATATGGTCTTATAC-AGTAGCAATATCACACC
*
97253182 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTATACAGTAGCA-ATATCACACC
*
97253229 GATGCCATATCCCAGATATGGTCTT
1 GATGCCATAGCCCAGATATGGTCTT
97253254 GTACGGAAAT
Statistics
Matches: 139, Mismatches: 15, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
42 31 0.22
43 1 0.01
44 4 0.03
45 4 0.03
46 28 0.20
47 33 0.24
48 6 0.04
49 30 0.22
50 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTATACAGTAGCAATATCACACC
Found at i:97253311 original size:31 final size:31
Alignment explanation
Indices: 97253276--97253362 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
97253266 CTTGTCACTT
*
97253276 GTAGCCGGAGCCACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
97253307 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
97253338 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
97253363 TGTCATTTGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 53 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:97253444 original size:50 final size:51
Alignment explanation
Indices: 97253338--97253466 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
97253328 CACTGATCAG
* * *
97253338 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
97253389 GTAGCCGAAGCTATCACTTATCACTT-TCAGTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
97253439 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
97253467 TGCCATAGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:97256721 original size:23 final size:23
Alignment explanation
Indices: 97256678--97256721 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
97256668 CCAATTCAAC
*
97256678 ATATTTTCAAGATAAATTCATGT
1 ATATTTTCAAGATAAAGTCATGT
*
97256701 ATATTTAT-AAGATAACGTCAT
1 ATATTT-TCAAGATAAAGTCAT
97256722 CACATACCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (23 bp):
ATATTTTCAAGATAAAGTCATGT
Found at i:97262142 original size:50 final size:50
Alignment explanation
Indices: 97262018--97262266 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
97262008 GATAATAACA
* * ** * *
97262018 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
97262069 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
97262119 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
97262169 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
97262224 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
97262267 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:97262196 original size:100 final size:104
Alignment explanation
Indices: 97262017--97262266 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
97262007 TGATAATAAC
**
97262017 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
97262082 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
97262119 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
97262182 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
97262224 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
97262267 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:97262382 original size:13 final size:13
Alignment explanation
Indices: 97262361--97262392 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
97262351 GCTTGGATCA
*
97262361 TCATCAAATAAAT
1 TCATAAAATAAAT
97262374 TCATAAAATAAAT
1 TCATAAAATAAAT
97262387 TCATAA
1 TCATAA
97262393 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:97262639 original size:30 final size:30
Alignment explanation
Indices: 97262604--97262661 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97262594 CCTCGACTCT
*
97262604 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
97262634 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
97262662 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:97266436 original size:24 final size:24
Alignment explanation
Indices: 97266409--97266457 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
97266399 TCAGTAAAAC
97266409 ATGAATGACAATATCACTAATCAA
1 ATGAATGACAATATCACTAATCAA
97266433 ATGAATGACAATATCACTAATCAA
1 ATGAATGACAATATCACTAATCAA
97266457 A
1 A
97266458 CACATCGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.16, G:0.08, T:0.24
Consensus pattern (24 bp):
ATGAATGACAATATCACTAATCAA
Found at i:97266796 original size:15 final size:14
Alignment explanation
Indices: 97266766--97266812 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
97266756 AGTAAATAAG
97266766 TAAAA-AAATGAAAA
1 TAAAAGAAA-GAAAA
*
97266780 TAAAAGAAACTAAAA
1 TAAAAGAAA-GAAAA
*
97266795 TAAAATAAAGAAAA
1 TAAAAGAAAGAAAA
97266809 TAAA
1 TAAA
97266813 GAATATAGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 13 0.46
15 15 0.54
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (14 bp):
TAAAAGAAAGAAAA
Found at i:97266815 original size:9 final size:10
Alignment explanation
Indices: 97266770--97266812 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
97266760 AATAAGTAAA
97266770 AAAATGAAAAT
1 AAAA-GAAAAT
*
97266781 AAAAGAAACT
1 AAAAGAAAAT
*
97266791 AAAATAAAAT
1 AAAAGAAAAT
97266801 -AAAGAAAAT
1 AAAAGAAAAT
97266810 AAA
1 AAA
97266813 GAATATAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 8 0.30
10 15 0.56
11 4 0.15
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (10 bp):
AAAAGAAAAT
Found at i:97271009 original size:108 final size:108
Alignment explanation
Indices: 97270820--97271036 Score: 353
Period size: 108 Copynumber: 2.0 Consensus size: 108
97270810 ATGGGTCATG
* *
97270820 AAACTAACTAATATTTCGACAAAGGCAAACGTACCTATCGAATAGTAGTATAGCTATGATGAGTT
1 AAACTAACTAATATTTCGACAAAGGCAAACGCACCTATCGAATAATAGTATAGCTATGATGAGTT
* *
97270885 CGGAATATTGTATTCACAATGACTAAAAGTACTAGTAATAACT
66 CGGAATATTATATTCACAAGGACTAAAAGTACTAGTAATAACT
* * * *
97270928 AAACTAACTACTATTTCGACGAAGGCAAGCGCACCTATCGAATAATAGTATAGCTATGGTGAGTT
1 AAACTAACTAATATTTCGACAAAGGCAAACGCACCTATCGAATAATAGTATAGCTATGATGAGTT
*
97270993 CGGAATTTTATATTCACAAGGACTAAAAGTACTAGTAATAACT
66 CGGAATATTATATTCACAAGGACTAAAAGTACTAGTAATAACT
97271036 A
1 A
97271037 TCTTTATATT
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 100 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (108 bp):
AAACTAACTAATATTTCGACAAAGGCAAACGCACCTATCGAATAATAGTATAGCTATGATGAGTT
CGGAATATTATATTCACAAGGACTAAAAGTACTAGTAATAACT
Found at i:97273523 original size:42 final size:42
Alignment explanation
Indices: 97273455--97273582 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
97273445 CTTCGTTTTC
** * *
97273455 TCGATGCCATAGTTCA-ACTATAGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGA-TATGGTCTTACACATATTCACAT-A
*
97273498 T-GATGCCATAGCCCAGATATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGATATGGTCTTACACATATTCACATA
* * *
97273539 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATA
1 TCGATGCCATAGCCCAGATATGGTCTTACACATATTCACATA
97273581 TC
1 TC
97273583 ACATATCGGT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.03
42 70 0.95
43 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGATATGGTCTTACACATATTCACATA
Found at i:97273598 original size:49 final size:48
Alignment explanation
Indices: 97273525--97273630 Score: 149
Period size: 49 Copynumber: 2.2 Consensus size: 48
97273515 TATGGTCTTA
* *
97273525 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAACCCAGCTATGGTCTTACACG-AAT
* * *
97273575 CACATATCACATATCGGTGCCATAACCCGGTTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACACGAAT
97273623 CACATATC
1 CACATATC
97273631 TCACTAATGC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 11 0.22
49 34 0.67
50 6 0.12
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAACCCAGCTATGGTCTTACACGAAT
Found at i:97273815 original size:30 final size:31
Alignment explanation
Indices: 97273738--97273846 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
97273728 TTGTAGCTGA
* *
97273738 AGCTACCACTATTCACTGATTAGGTAGCCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
*
97273769 TA-CTACCACTTTTCACTGATCAGGTAACCGG
1 -AGCTACCACTTTTCACTGATCAGGTAGCCGG
* *
97273800 AGCTACCAC-TTTCACTGATCAGGTAGCTGA
1 AGCTACCACTTTTCACTGATCAGGTAGCCGG
97273830 AGCTACCACTTTTCACT
1 AGCTACCACTTTTCACT
97273847 TGTCATTTGT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
30 28 0.41
31 40 0.58
32 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAGCCGG
Found at i:97273928 original size:50 final size:50
Alignment explanation
Indices: 97273822--97274048 Score: 357
Period size: 50 Copynumber: 4.5 Consensus size: 50
97273812 CACTGATCAG
* * * *
97273822 GTAGCTGAAGCTACCACTTTTCACTTGTCA-TTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
97273873 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
* *
97273923 GTAGCCGAAGTTATCACTTTTCACTTTCACTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
* *
97273973 GTAGCGGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGACAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
97274023 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
97274049 GTTGCCATGG
Statistics
Matches: 164, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
50 138 0.84
51 26 0.16
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCACTTTTCCTTGATCAGATAAGT
Found at i:97277660 original size:43 final size:39
Alignment explanation
Indices: 97277575--97277670 Score: 102
Period size: 43 Copynumber: 2.4 Consensus size: 39
97277565 AAAAAATGGC
* **
97277575 AATCAATTTCTAACCCTAGACCCTGTTAATCGATTATTG
1 AATCAATTTCTAACCCTAAACCCTGTTAATCGATTACCG
* *
97277614 AATCAATTTTTAACCCTAAACCAACCTTGTTAATCGATTCCCG
1 AATCAATTTCTAACCCTAAA-C--CC-TGTTAATCGATTACCG
*
97277657 AATCGATTTCTAAC
1 AATCAATTTCTAAC
97277671 ATAAATCCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 18 0.39
40 1 0.02
42 2 0.04
43 25 0.54
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.34
Consensus pattern (39 bp):
AATCAATTTCTAACCCTAAACCCTGTTAATCGATTACCG
Found at i:97281293 original size:18 final size:19
Alignment explanation
Indices: 97281263--97281299 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
97281253 GCATTAGTCA
97281263 TATTTATTATTTG-AATTT
1 TATTTATTATTTGTAATTT
97281281 TATTCTATT-TTTGTAATTT
1 TATT-TATTATTTGTAATTT
97281300 AAAAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (19 bp):
TATTTATTATTTGTAATTT
Found at i:97282559 original size:17 final size:17
Alignment explanation
Indices: 97282537--97282571 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
97282527 GATACATGCT
97282537 TGTTGGATACTAATACC
1 TGTTGGATACTAATACC
97282554 TGTTGGATACTAATACC
1 TGTTGGATACTAATACC
97282571 T
1 T
97282572 ATCTTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (17 bp):
TGTTGGATACTAATACC
Found at i:97285265 original size:9 final size:9
Alignment explanation
Indices: 97285253--97285311 Score: 75
Period size: 9 Copynumber: 6.6 Consensus size: 9
97285243 AAAAGTATAA
97285253 AATTAACCG
1 AATTAACCG
*
97285262 AATTAATCG
1 AATTAACCG
*
97285271 AATTCACCG
1 AATTAACCG
*
97285280 AATT-ACTCA
1 AATTAAC-CG
97285289 AATTAACCG
1 AATTAACCG
97285298 AATTAACCG
1 AATTAACCG
97285307 AATTA
1 AATTA
97285312 TTTGTATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
8 2 0.05
9 39 0.91
10 2 0.05
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:97285346 original size:5 final size:6
Alignment explanation
Indices: 97285331--97285371 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
97285321 AATTATATGT
97285331 TTTTTA TTTTTA TTTTTA TTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTT--A TTTTTA TTTTTA TTT
97285372 ATTAAATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:97285359 original size:14 final size:13
Alignment explanation
Indices: 97285331--97285368 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
97285321 AATTATATGT
97285331 TTTTTATTTTT-A
1 TTTTTATTTTTAA
97285343 TTTTTATTTTTAGA
1 TTTTTATTTTTA-A
97285357 TTTTTATTTTTA
1 TTTTTATTTTTA
97285369 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.46
14 13 0.54
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (13 bp):
TTTTTATTTTTAA
Found at i:97285537 original size:18 final size:18
Alignment explanation
Indices: 97285514--97285548 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97285504 TTTATTTATT
97285514 AATTTTTTCGATTAACTA
1 AATTTTTTCGATTAACTA
*
97285532 AATTTTTTCGGTTAACT
1 AATTTTTTCGATTAACT
97285549 GACCGGTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (18 bp):
AATTTTTTCGATTAACTA
Found at i:97286124 original size:11 final size:11
Alignment explanation
Indices: 97286108--97286168 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 11
97286098 AAGTTGAGAG
*
97286108 AATTGAAAGAT
1 AATTGAAAGAA
* *
97286119 AATTGAGAGAG
1 AATTGAAAGAA
*
97286130 AATTGAGAGAA
1 AATTGAAAGAA
* *
97286141 AACTAAAAGAA
1 AATTGAAAGAA
97286152 AATTGAAA-AA
1 AATTGAAAGAA
97286162 AA-TGAAA
1 AATTGAAA
97286169 TTGAGGGATT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
9 5 0.12
10 4 0.10
11 33 0.79
ACGTcount: A:0.61, C:0.02, G:0.20, T:0.18
Consensus pattern (11 bp):
AATTGAAAGAA
Found at i:97291160 original size:17 final size:16
Alignment explanation
Indices: 97291112--97291162 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 16
97291102 AAAAAATATT
97291112 ATTTTAACATTTTATTTA
1 ATTTTAA-ATTTT-TTTA
*
97291130 ATTTTTAATCTTTTTTA
1 ATTTTAAAT-TTTTTTA
97291147 ATTCTTAAATTTTTTT
1 ATT-TTAAATTTTTTT
97291163 TTGTTAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 15 0.52
18 14 0.48
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTTTAAATTTTTTTA
Found at i:97291163 original size:18 final size:17
Alignment explanation
Indices: 97291112--97291163 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
97291102 AAAAAATATT
*
97291112 ATTTTAACATTTTATTTA
1 ATTTTAA-ATTTTTTTTA
* *
97291130 ATTTTTAATCTTTTTTA
1 ATTTTAAATTTTTTTTA
97291147 ATTCTTAAATTTTTTTT
1 ATT-TTAAATTTTTTTT
97291164 TGTTAAATCA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTAAATTTTTTTTA
Found at i:97298106 original size:13 final size:12
Alignment explanation
Indices: 97298069--97298117 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 12
97298059 GAAAATTCTA
97298069 TTTTCTTTCTTTC
1 TTTT-TTTCTTTC
*
97298082 TTTTTTCACTTTC
1 TTTTTT-TCTTTC
*
97298095 TTTTCTTTCTTTA
1 TTTT-TTTCTTTC
97298108 TTTTTTTCTT
1 TTTTTTTCTT
97298118 CAGATCAAGC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 8 0.26
13 21 0.68
14 2 0.06
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:97300820 original size:17 final size:17
Alignment explanation
Indices: 97300798--97300830 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
97300788 ATGCCGAATA
97300798 GCTGTTTGCTGCAATTT
1 GCTGTTTGCTGCAATTT
97300815 GCTGTTTGCTGCAATT
1 GCTGTTTGCTGCAATT
97300831 CTATTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.18, G:0.24, T:0.45
Consensus pattern (17 bp):
GCTGTTTGCTGCAATTT
Found at i:97304598 original size:21 final size:21
Alignment explanation
Indices: 97304523--97304588 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 21
97304513 GTCTTGAATT
*
97304523 TGTTACATATTGAATTTATTA
1 TGTTAGATATTGAATTTATTA
* *
97304544 TGTTTTAAGCTTGTTGAATTTATTA
1 TG--TT-AG-ATATTGAATTTATTA
97304569 TGTTAGATATTGAATTTATT
1 TGTTAGATATTGAATTTATT
97304589 TGGTTGGATA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 14 0.39
22 2 0.06
23 4 0.11
24 1 0.03
25 15 0.42
ACGTcount: A:0.29, C:0.03, G:0.14, T:0.55
Consensus pattern (21 bp):
TGTTAGATATTGAATTTATTA
Found at i:97305914 original size:28 final size:28
Alignment explanation
Indices: 97305846--97305917 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
97305836 AATAAATTGC
*
97305846 AATATATGTAAAAACAATTTAAAGTATA
1 AATATATGTAAAAACAATTTAAAATATA
* *
97305874 AGTTTAT-TAAAAAACAATTTAAAATATA
1 AATATATGT-AAAAACAATTTAAAATATA
*
97305902 AATACATGTAAAAACA
1 AATATATGTAAAAACA
97305918 GCTTTTCCGA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 1 0.03
28 34 0.94
29 1 0.03
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (28 bp):
AATATATGTAAAAACAATTTAAAATATA
Found at i:97306049 original size:20 final size:19
Alignment explanation
Indices: 97305989--97306053 Score: 112
Period size: 19 Copynumber: 3.4 Consensus size: 19
97305979 CATCCAAACA
*
97305989 CCAGAAAAGTAAATCATTT
1 CCAGAAAACTAAATCATTT
97306008 CCAGAAAACTAAATCATTT
1 CCAGAAAACTAAATCATTT
97306027 CCAGAAAACTAAATCATTTT
1 CCAGAAAACTAAATCA-TTT
97306047 CCAGAAA
1 CCAGAAA
97306054 TCATTTTCTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
19 34 0.77
20 10 0.23
ACGTcount: A:0.48, C:0.20, G:0.08, T:0.25
Consensus pattern (19 bp):
CCAGAAAACTAAATCATTT
Found at i:97306067 original size:14 final size:14
Alignment explanation
Indices: 97306037--97306082 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
97306027 CCAGAAAACT
**
97306037 AAATCATTTTCCAG
1 AAATCATTTTCTGG
97306051 AAATCATTTTCTGG
1 AAATCATTTTCTGG
*
97306065 AAAACATTTTACTGG
1 AAATCATTTT-CTGG
97306080 AAA
1 AAA
97306083 ACAAACGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 21 0.75
15 7 0.25
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (14 bp):
AAATCATTTTCTGG
Found at i:97308459 original size:39 final size:39
Alignment explanation
Indices: 97308282--97308448 Score: 289
Period size: 39 Copynumber: 4.3 Consensus size: 39
97308272 GCGGGCTTTA
97308282 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
**
97308321 AGCCCGGATATAACGCCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
** *
97308360 AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
97308399 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
97308438 AGCCCGGATAT
1 AGCCCGGATAT
97308449 TTTTCCAGCA
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 120 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
Found at i:97308484 original size:39 final size:39
Alignment explanation
Indices: 97308441--97308572 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
97308431 GGGACTTAGC
* * *
97308441 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
97308480 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
*
97308519 CCGGATATATTTCCAGCATAAAGCCTGCAGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
*
97308558 CCGGATATTTTTCCA
1 CCGGATATATTTCCA
97308573 ATACCATGCA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 86 0.99
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:97308484 original size:78 final size:78
Alignment explanation
Indices: 97308282--97308565 Score: 249
Period size: 78 Copynumber: 3.6 Consensus size: 78
97308272 GCGGGCTTTA
* * * * * **
97308282 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC-TT-AGCCCGGATATAACGCCAGCACGA
1 AGCCCGGATATATTTCCAGCACTAA-GCCTGC-GGACTTTAAGTCCGGATATAATACCAGCACGA
97308345 ATGCCTTCGGGACTT
64 ATGCCTTCGGGACTT
*** * * *
97308360 AGCCCGGATATAGCACCAGCACGAATGCCTTCAGGAC-TT-AGCCCGGATATAATACCAGCACGA
1 AGCCCGGATATATTTCCAGCACTAA-GCCTGC-GGACTTTAAGTCCGGATATAATACCAGCACGA
97308423 ATGCCTTCGGGACTT
64 ATGCCTTCGGGACTT
* * * * * *
97308438 AGCCCGGATATTTTTCCAGCACTTAGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCA-TAAA
1 AGCCCGGATATATTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAATACCAGCACGAAT
*
97308502 GCCTGC-GGACTT
66 GCCTTCGGGACTT
* * *
97308514 CAAGTCCGGATATATTTCCAGCA-TAAAGCCTGCAGACTTCAAGTCCGGATAT
1 --AGCCCGGATATATTTCCAGCACT-AAGCCTGCGGACTTTAAGTCCGGATAT
97308566 TTTTCCAATA
Statistics
Matches: 178, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
76 10 0.06
77 15 0.08
78 153 0.86
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (78 bp):
AGCCCGGATATATTTCCAGCACTAAGCCTGCGGACTTTAAGTCCGGATATAATACCAGCACGAAT
GCCTTCGGGACTT
Found at i:97308523 original size:117 final size:117
Alignment explanation
Indices: 97308256--97308536 Score: 302
Period size: 117 Copynumber: 2.4 Consensus size: 117
97308246 AAAATCAAAT
* * *
97308256 CACCACCAC-AAAGCATGCGGGCTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACT
1 CACCAGCACGAAAGCCTGCGGAC-TTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACT
*
97308320 TAGCCCGGATATAACGCCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAG
65 TAGCCCGGATATAACGCCAGCACGAATGCCTGCGGGACTTAGCCCGGATATAG
* *
97308373 CACCAGCACGAATGCCTTCAGGACTT-AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACT
1 CACCAGCACGAAAGCCTGC-GGACTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACT
**** ** * *
97308437 TAGCCCGGATATTTTTCCAGCACTTA-GCCTGC-GGACTTTAAGTCCGGATATAT
65 TAGCCCGGATATAACGCCAGCACGAATGCCTGCGGGAC-TT-AGCCCGGATATAG
** * * * *
97308490 TTCCAGCA-TAAAGCCTGCGGACTTCAAGTCCGGATATATTTCCAGCA
1 CACCAGCACGAAAGCCTGCGGACTT-AAGCCCGGATATAATACCAGCA
97308537 TAAAGCCTGC
Statistics
Matches: 136, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
115 10 0.07
116 14 0.10
117 101 0.74
118 8 0.06
119 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (117 bp):
CACCAGCACGAAAGCCTGCGGACTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
AGCCCGGATATAACGCCAGCACGAATGCCTGCGGGACTTAGCCCGGATATAG
Found at i:97311506 original size:11 final size:11
Alignment explanation
Indices: 97311492--97311517 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97311482 ATTTATCAGC
97311492 TATTATTATTT
1 TATTATTATTT
97311503 TATTATTATTT
1 TATTATTATTT
97311514 TATT
1 TATT
97311518 CTAAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TATTATTATTT
Found at i:97312266 original size:13 final size:13
Alignment explanation
Indices: 97312229--97312279 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
97312219 GAAAATTCTA
97312229 TTTTCTTTCTTTC
1 TTTTCTTTCTTTC
*
97312242 TTTT-TTCACTTTC
1 TTTTCTT-TCTTTC
*
97312255 TTTTCTTTCTTTA
1 TTTTCTTTCTTTC
*
97312268 TTTTTTTTCTTT
1 TTTTCTTTCTTT
97312280 AGATCAAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 2 0.06
13 28 0.88
14 2 0.06
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTCTTTCTTTC
Found at i:97317083 original size:68 final size:68
Alignment explanation
Indices: 97316924--97317083 Score: 266
Period size: 68 Copynumber: 2.4 Consensus size: 68
97316914 TTCTTTTTTA
* * * *
97316924 AAAATTAATTAAATTAGGGTTTAAGAGTTTTAAATAAATTAATTAAATTTGGGTTTAATGTTTTT
1 AAAATTAATTAAATTAGGGTTTAGGAGTTTTAAATAAATTAAATAAATTTGGGTTCAATATTTTT
97316989 AAG
66 AAG
*
97316992 AAAATTAATTAAATTAGGGTTTAGGGGTTTTAAATAAATTAAATAAATTTGGGTTCAATATTTTT
1 AAAATTAATTAAATTAGGGTTTAGGAGTTTTAAATAAATTAAATAAATTTGGGTTCAATATTTTT
97317057 AAG
66 AAG
*
97317060 AAAATTAATTAAATTTGGGTTTAG
1 AAAATTAATTAAATTAGGGTTTAG
97317084 TCTTTTTAAA
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.41, C:0.01, G:0.16, T:0.42
Consensus pattern (68 bp):
AAAATTAATTAAATTAGGGTTTAGGAGTTTTAAATAAATTAAATAAATTTGGGTTCAATATTTTT
AAG
Found at i:97317090 original size:34 final size:33
Alignment explanation
Indices: 97316917--97317097 Score: 193
Period size: 34 Copynumber: 5.4 Consensus size: 33
97316907 TTTAGTGTTC
* *
97316917 TTTTTTAAAAATTAATTAAATTAGGGTTTAAG-A
1 TTTTTAAAAAATTAATTAAATTTGGGTTT-AGTA
* * *
97316950 GTTTTAAATAAATTAATTAAATTTGGGTTTAATG
1 TTTTTAAA-AAATTAATTAAATTTGGGTTTAGTA
* **
97316984 TTTTTAAGAAAATTAATTAAATTAGGGTTTAGGG
1 TTTTTAA-AAAATTAATTAAATTTGGGTTTAGTA
* * * *
97317018 GTTTTAAATAAATTAAATAAATTTGGGTTCAATA
1 TTTTTAAA-AAATTAATTAAATTTGGGTTTAGTA
*
97317052 TTTTTAAGAAAATTAATTAAATTTGGGTTTAGTC
1 TTTTTAA-AAAATTAATTAAATTTGGGTTTAGTA
97317086 TTTTTAAAAAAT
1 TTTTTAAAAAAT
97317098 AATATTGTGT
Statistics
Matches: 122, Mismatches: 21, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
33 13 0.11
34 107 0.88
35 2 0.02
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45
Consensus pattern (33 bp):
TTTTTAAAAAATTAATTAAATTTGGGTTTAGTA
Found at i:97320494 original size:41 final size:42
Alignment explanation
Indices: 97320421--97320558 Score: 133
Period size: 41 Copynumber: 3.3 Consensus size: 42
97320411 GTGCTAAAGC
* * ** *
97320421 ATAGCCGAAGTTATTAT-AATCTCGCATGCTAAGTGCCT-TTT
1 ATAGCCGAAGCTATT-TCAATCTCACACACTAAGTGCCTATAT
* *
97320462 ATAGCCGAAGCTATTTCAATCTCTCACACTAAGTTCCATATAT
1 ATAGCCGAAGCTATTTCAATCTCACACACTAAGTGCC-TATAT
* *
97320505 ATAGCCAAAGCTA-TTCTGAT-TCACACACTAAGTG-CTATAT
1 ATAGCCGAAGCTATTTC-AATCTCACACACTAAGTGCCTATAT
97320545 ATAGCCGAAGCTAT
1 ATAGCCGAAGCTAT
97320559 ATTGAAACGC
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
40 18 0.22
41 31 0.38
42 16 0.20
43 16 0.20
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (42 bp):
ATAGCCGAAGCTATTTCAATCTCACACACTAAGTGCCTATAT
Found at i:97320572 original size:42 final size:43
Alignment explanation
Indices: 97320461--97320572 Score: 115
Period size: 40 Copynumber: 2.7 Consensus size: 43
97320451 AAGTGCCTTT
* * *
97320461 TATAGCCGAAGCTATTTCAATCTCTCACACTAAGTTCCATATA
1 TATAGCCGAAGCTATTTGAAACTCACACACTAAGTTCCATATA
* * *
97320504 TATAGCCAAAGCTATTCTG--ATTCACACACTAAG-TGC-TATA
1 TATAGCCGAAGCTATT-TGAAACTCACACACTAAGTTCCATATA
*
97320544 TATAGCCGAAGCTATATTGAAACGCACAC
1 TATAGCCGAAGCTAT-TTGAAACTCACAC
97320573 TAACTGCCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
40 20 0.36
41 3 0.05
42 17 0.30
43 15 0.27
44 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (43 bp):
TATAGCCGAAGCTATTTGAAACTCACACACTAAGTTCCATATA
Found at i:97322700 original size:24 final size:23
Alignment explanation
Indices: 97322647--97322700 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 23
97322637 AACTTCTATT
97322647 TTATTAAAAATATAAAAATAAT-
1 TTATTAAAAATATAAAAATAATC
*
97322669 TTACTATTAAAATATTAAAAATAACTC
1 TTA-T-TAAAAATA-TAAAAATAA-TC
97322696 TTATT
1 TTATT
97322701 TTATTAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
22 3 0.12
23 1 0.04
24 7 0.27
25 10 0.38
26 2 0.08
27 3 0.12
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (23 bp):
TTATTAAAAATATAAAAATAATC
Found at i:97333954 original size:21 final size:20
Alignment explanation
Indices: 97333930--97333969 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
97333920 CATGTATTTT
97333930 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
97333951 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
97333970 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:97333977 original size:20 final size:21
Alignment explanation
Indices: 97333935--97333977 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
97333925 ATTTTAATGA
*
97333935 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
97333956 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
97333976 TT
1 TT
97333978 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:97352709 original size:23 final size:23
Alignment explanation
Indices: 97352669--97352715 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
97352659 TATATCATTT
*
97352669 TCAATGATAGATCCAATAAATCA
1 TCAATGATAGATCAAATAAATCA
** *
97352692 TCAATGATATTTCAAATAACTCA
1 TCAATGATAGATCAAATAAATCA
97352715 T
1 T
97352716 GAACCTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.17, G:0.06, T:0.32
Consensus pattern (23 bp):
TCAATGATAGATCAAATAAATCA
Found at i:97354223 original size:3 final size:3
Alignment explanation
Indices: 97354215--97354241 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
97354205 TTTTCTCAAT
97354215 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
97354242 GTAAATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:97359243 original size:44 final size:43
Alignment explanation
Indices: 97359193--97359336 Score: 136
Period size: 42 Copynumber: 3.3 Consensus size: 43
97359183 TGTGTTTTAG
97359193 TGTAAGACCATGTCTGGGA-AGCTGGCATCGACTTATGATTTACA
1 TGTAAGACCATGTCTGGGACAGCTGGCATCGA-TT-TGATTTACA
* * * * *
97359237 TGTAAGACCATGTCTGAGACATC-GGTATTGTATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACAGCTGGCATCG-ATTTGATTTACA
* *
97359279 TGTAAGACCTTGTCTGGGACAG-TGGCATCAATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACAGCTGGCATC--GATTTGATTTACA
*
97359322 TGTAAGACCACGTCT
1 TGTAAGACCATGTCT
97359337 AGGATGTTGG
Statistics
Matches: 80, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
42 26 0.32
43 26 0.32
44 25 0.31
45 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGCTGGCATCGATTTGATTTACA
Found at i:97362956 original size:17 final size:18
Alignment explanation
Indices: 97362924--97362957 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
97362914 AATTTCTTTT
97362924 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
97362942 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
97362958 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:97363430 original size:17 final size:18
Alignment explanation
Indices: 97363400--97363443 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
97363390 CCTTCATTTC
*
97363400 TTTCTTTTATTCTTTTA-G
1 TTTC-TTTAATCTTTTATG
97363418 TTTCTTTAATCTTTTATG
1 TTTCTTTAATCTTTTATG
*
97363436 TTTATTTA
1 TTTCTTTA
97363444 CTGTATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.16, C:0.09, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTCTTTAATCTTTTATG
Found at i:97366691 original size:13 final size:13
Alignment explanation
Indices: 97366673--97366699 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97366663 GCTCGGTAGG
97366673 GACACACCCGTGT
1 GACACACCCGTGT
97366686 GACACACCCGTGT
1 GACACACCCGTGT
97366699 G
1 G
97366700 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACACCCGTGT
Found at i:97375219 original size:16 final size:17
Alignment explanation
Indices: 97375195--97375228 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97375185 CAATAACAAG
*
97375195 ATTCGTCTTAGGT-TTT
1 ATTCCTCTTAGGTATTT
97375211 ATTCCTCTTAGGTATTT
1 ATTCCTCTTAGGTATTT
97375228 A
1 A
97375229 GGGGTTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (17 bp):
ATTCCTCTTAGGTATTT
Found at i:97375534 original size:13 final size:13
Alignment explanation
Indices: 97375516--97375555 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
97375506 GTTTGGCAGG
97375516 GACACGCCCGTGT
1 GACACGCCCGTGT
97375529 GACACGCCCGTGT
1 GACACGCCCGTGT
97375542 GACACGCCCGTGT
1 GACACGCCCGTGT
97375555 G
1 G
97375556 CGATTACTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.38, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:97379910 original size:18 final size:19
Alignment explanation
Indices: 97379876--97379915 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
97379866 AACACAACTA
*
97379876 AAATTAATAATAATAAAAT
1 AAATGAATAATAATAAAAT
97379895 AAATGAATAA-AATAAAAT
1 AAATGAATAATAATAAAAT
97379913 AAA
1 AAA
97379916 AACAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (19 bp):
AAATGAATAATAATAAAAT
Found at i:97383835 original size:23 final size:23
Alignment explanation
Indices: 97383805--97383852 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
97383795 AAGTGAAGTC
97383805 TAAGTGGATTCTTCC-TGAGGTAT
1 TAAGTGGATTCTTCCTTG-GGTAT
97383828 TAAGTGGATTCTTCCTTGGGTAT
1 TAAGTGGATTCTTCCTTGGGTAT
97383851 TA
1 TA
97383853 TCTTCTCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.42
Consensus pattern (23 bp):
TAAGTGGATTCTTCCTTGGGTAT
Found at i:97387412 original size:19 final size:19
Alignment explanation
Indices: 97387360--97387418 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 19
97387350 TACCCCCACT
*
97387360 TTTATGTTATTTTAGTTTCA
1 TTTAT-TTATTTTAGTTTTA
97387380 TTTATTTA--TT--TTTTA
1 TTTATTTATTTTAGTTTTA
*
97387395 TTTTTTTATTTTAGTTTTA
1 TTTATTTATTTTAGTTTTA
97387414 GTTTA
1 -TTTA
97387419 AATTTCTCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
15 11 0.35
17 4 0.13
19 8 0.26
20 8 0.26
ACGTcount: A:0.19, C:0.02, G:0.07, T:0.73
Consensus pattern (19 bp):
TTTATTTATTTTAGTTTTA
Found at i:97388946 original size:12 final size:11
Alignment explanation
Indices: 97388920--97388970 Score: 61
Period size: 12 Copynumber: 4.6 Consensus size: 11
97388910 TCTGAGTTCA
97388920 TTTTTTTA--T
1 TTTTTTTATTT
97388929 TTTTTTTATTT
1 TTTTTTTATTT
97388940 TTGTTTTTATTT
1 TT-TTTTTATTT
97388952 TTTCTTTTATTT
1 TTT-TTTTATTT
*
97388964 ATTTTTT
1 TTTTTTT
97388971 GAAGACTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
9 8 0.22
11 8 0.22
12 21 0.57
ACGTcount: A:0.10, C:0.02, G:0.02, T:0.86
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:97390101 original size:18 final size:20
Alignment explanation
Indices: 97390071--97390107 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
97390061 TGGATAGTCT
97390071 TAATTCTAGTAATT-GTTTG
1 TAATTCTAGTAATTAGTTTG
97390090 TAATTC-AGTAATTAGTTT
1 TAATTCTAGTAATTAGTTT
97390108 TATTATTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (20 bp):
TAATTCTAGTAATTAGTTTG
Found at i:97403468 original size:10 final size:10
Alignment explanation
Indices: 97403453--97403519 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
97403443 ATGATTTTTC
97403453 AAAAAATTAT
1 AAAAAATTAT
*
97403463 AAAAAAATAT
1 AAAAAATTAT
97403473 AAAAAAATTATT
1 -AAAAAATTA-T
*
97403485 AAGAAA-TAT
1 AAAAAATTAT
* *
97403494 GAGAAATTAT
1 AAAAAATTAT
*
97403504 TAAAAATTAAT
1 AAAAAATT-AT
97403515 AAAAA
1 AAAAA
97403520 TATTTAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
9 6 0.13
10 20 0.43
11 19 0.41
12 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:97403478 original size:20 final size:20
Alignment explanation
Indices: 97403453--97403519 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
97403443 ATGATTTTTC
*
97403453 AAAAAATTATAAAAAAATAT
1 AAAAAATTATTAAAAAATAT
*
97403473 AAAAAAATTATTAAGAAATAT
1 -AAAAAATTATTAAAAAATAT
* * *
97403494 GAGAAATTATTAAAAATTAAT
1 AAAAAATTATTAAAAAAT-AT
97403515 AAAAA
1 AAAAA
97403520 TATTTAAATT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 14 0.38
21 23 0.62
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAAAATTATTAAAAAATAT
Found at i:97403940 original size:30 final size:31
Alignment explanation
Indices: 97403889--97403978 Score: 112
Period size: 30 Copynumber: 2.9 Consensus size: 31
97403879 TGCTAATAAG
* *
97403889 AAAGGCTTAATTAATTTTTAAATTATTTTGC
1 AAAGACTTAATTAATTTTTAAATTATTTTAC
*
97403920 -AAGAACTTAATTAA-TTTTAAATTATTTTAT
1 AAAG-ACTTAATTAATTTTTAAATTATTTTAC
*
97403950 AAAGATTTAATTAATTTTTTAAATTATTT
1 AAAGACTTAATTAA-TTTTTAAATTATTT
97403979 AAGACTAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
30 26 0.51
31 12 0.24
32 13 0.25
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (31 bp):
AAAGACTTAATTAATTTTTAAATTATTTTAC
Found at i:97404340 original size:12 final size:10
Alignment explanation
Indices: 97404304--97404345 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
97404294 ATGTTTTTAT
97404304 ATTTTATA-A
1 ATTTTATATA
*
97404313 TTTTTATATA
1 ATTTTATATA
97404323 ATTTTATATA
1 ATTTTATATA
97404333 ACTCTTTATATA
1 A-T-TTTATATA
97404345 A
1 A
97404346 AATTTATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 7 0.25
10 11 0.39
11 1 0.04
12 9 0.32
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (10 bp):
ATTTTATATA
Found at i:97404580 original size:9 final size:9
Alignment explanation
Indices: 97404566--97404654 Score: 60
Period size: 9 Copynumber: 9.9 Consensus size: 9
97404556 ATTATCTATG
97404566 ATTTTTTAT
1 ATTTTTTAT
97404575 A-TTTTTAT
1 ATTTTTTAT
97404583 AATTTTTT-T
1 -ATTTTTTAT
*
97404592 ATAATTTTA-
1 AT-TTTTTAT
**
97404601 ATAATTTAT
1 ATTTTTTAT
*
97404610 ATTTTCTAT
1 ATTTTTTAT
97404619 -TTTTTTAT
1 ATTTTTTAT
97404627 AATTTTTTAT
1 -ATTTTTTAT
**
97404637 AACTTTTAT
1 ATTTTTTAT
97404646 AATTTTTTA
1 -ATTTTTTA
97404655 AACTTGTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
8 21 0.34
9 22 0.35
10 19 0.31
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:97404605 original size:54 final size:52
Alignment explanation
Indices: 97404546--97404651 Score: 117
Period size: 54 Copynumber: 2.0 Consensus size: 52
97404536 AAACTTTTAA
*
97404546 AATAATAAAAATTATCTATGATTTTTTAT-A-TTTTTATAATTTTTTTATAATTTT
1 AATAATAAAAATTATCTAT--TTTTTTATAATTTTTTATAA--CTTTTATAATTTT
** * *
97404600 AATAATTTATATTTTCTATTTTTTTATAATTTTTTATAACTTTTATAATTTT
1 AATAATAAAAATTATCTATTTTTTTATAATTTTTTATAACTTTTATAATTTT
97404652 TTAAACTTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
52 20 0.44
53 1 0.02
54 24 0.53
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (52 bp):
AATAATAAAAATTATCTATTTTTTTATAATTTTTTATAACTTTTATAATTTT
Found at i:97404614 original size:44 final size:43
Alignment explanation
Indices: 97404566--97404650 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 43
97404556 ATTATCTATG
*
97404566 ATTTTTTATATTTTTATAATTTTTTTATAA-TTTTAATAATTTAT
1 ATTTTCTATATTTTTATAA-TTTTTTATAACTTTT-ATAATTTAT
*
97404610 ATTTTCTATTTTTTTATAATTTTTTATAACTTTTATAATTT
1 ATTTTCTATATTTTTATAATTTTTTATAACTTTTATAATTT
97404651 TTTAAACTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
43 17 0.45
44 21 0.55
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (43 bp):
ATTTTCTATATTTTTATAATTTTTTATAACTTTTATAATTTAT
Found at i:97404654 original size:19 final size:18
Alignment explanation
Indices: 97404621--97404674 Score: 81
Period size: 19 Copynumber: 2.9 Consensus size: 18
97404611 TTTTCTATTT
97404621 TTTTATAATTTTTTATAAC
1 TTTTATAATTTTTTA-AAC
97404640 TTTTATAATTTTTTAAAC
1 TTTTATAATTTTTTAAAC
*
97404658 TTGTTATAATATTTTAA
1 TT-TTATAATTTTTTAA
97404675 TAATATTTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
18 5 0.15
19 28 0.85
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTTATAATTTTTTAAAC
Found at i:97408058 original size:17 final size:17
Alignment explanation
Indices: 97408036--97408076 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
97408026 ATTAATATAT
*
97408036 TTTTTTATAATTATTTA
1 TTTTTTAGAATTATTTA
* *
97408053 TTTTTTAGGATTTTTTA
1 TTTTTTAGAATTATTTA
97408070 TTTTTTA
1 TTTTTTA
97408077 AACATTTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTTTAGAATTATTTA
Found at i:97408501 original size:12 final size:12
Alignment explanation
Indices: 97408454--97408540 Score: 51
Period size: 12 Copynumber: 7.5 Consensus size: 12
97408444 TAATATATAC
97408454 AAATATAA-ATAT
1 AAATATAATA-AT
*
97408466 AAGTATAAGT-AT
1 AAATATAA-TAAT
*
97408478 AAGTATATATAAT
1 AAATATA-ATAAT
97408491 AAATATAATAAT
1 AAATATAATAAT
**
97408503 CTATATAATAAT
1 AAATATAATAAT
*
97408515 -AGTATAAT-AT
1 AAATATAATAAT
*
97408525 AAA-ATATTAA-
1 AAATATAATAAT
97408535 AAATAT
1 AAATAT
97408541 CAATTTAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
10 9 0.15
11 10 0.17
12 32 0.53
13 9 0.15
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.36
Consensus pattern (12 bp):
AAATATAATAAT
Found at i:97427568 original size:165 final size:169
Alignment explanation
Indices: 97427260--97427590 Score: 508
Period size: 165 Copynumber: 2.0 Consensus size: 169
97427250 CACAACGCGA
* * *
97427260 AATGTCCGGACCAGTCGGGCCTTCTAGGCCTGCAAATGTTTTAGCGCAATATATAATCTTATTTT
1 AATGTCCGGACCAGTCGGGCCTTCTAGGCCTGCAAATATTTTAGCCCAATACATAATCTTATTTT
* * * *
97427325 CTTTCCTCAGCAGAACTTATCAATTTGGAATTAAAAAGGAGTTAATGGCTTATTTAACTCAAACA
66 CTTTCCTCAACAGAACTTATCAATTCGGAATTAAAAAAGAGTTAATGGCTCATTTAACTCAAACA
97427390 TTAATTTGGGATTAATGGCTCCTTAATTAACAGACATAT
131 TTAATTTGGGATTAATGGCTCCTTAATTAACAGACATAT
* *
97427429 AATGTCTGGACCAGTTGGGCCTTCTAGGCCTGCAAATATTTTAGCCCAATACATAATC-T-TTTT
1 AATGTCCGGACCAGTCGGGCCTTCTAGGCCTGCAAATATTTTAGCCCAATACATAATCTTATTTT
* * * *
97427492 -TTT-CTCAACAGTATTTATCAGTTCGGAATTAAAAAAGAGTTAATGGCTCATTTAATTCAAACA
66 CTTTCCTCAACAGAACTTATCAATTCGGAATTAAAAAAGAGTTAATGGCTCATTTAACTCAAACA
*
97427555 TTAATTTGGGATTAATGGCTCCTTAATTCACAGACA
131 TTAATTTGGGATTAATGGCTCCTTAATTAACAGACA
97427591 CATTATTGGC
Statistics
Matches: 148, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
165 87 0.59
166 3 0.02
167 4 0.03
168 1 0.01
169 53 0.36
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (169 bp):
AATGTCCGGACCAGTCGGGCCTTCTAGGCCTGCAAATATTTTAGCCCAATACATAATCTTATTTT
CTTTCCTCAACAGAACTTATCAATTCGGAATTAAAAAAGAGTTAATGGCTCATTTAACTCAAACA
TTAATTTGGGATTAATGGCTCCTTAATTAACAGACATAT
Found at i:97428815 original size:27 final size:27
Alignment explanation
Indices: 97428750--97428866 Score: 92
Period size: 27 Copynumber: 4.4 Consensus size: 27
97428740 ACGGACTTTC
* * *
97428750 CCCATATTAGATAGACCTTACAGACTT
1 CCCACATTAGATAGTCCTAACAGACTT
** *
97428777 -CCACAAAAGATGGTCCTAACAGACTT
1 CCCACATTAGATAGTCCTAACAGACTT
* * **
97428803 CCCACATTAGATGGTCCTAACTGGTTT
1 CCCACATTAGATAGTCCTAACAGACTT
* * * *
97428830 CCCACAGTAGATAGTCCTGACGGGCTT
1 CCCACATTAGATAGTCCTAACAGACTT
*
97428857 TCCACATTAG
1 CCCACATTAG
97428867 TTAGATTGGT
Statistics
Matches: 71, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
26 20 0.28
27 51 0.72
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (27 bp):
CCCACATTAGATAGTCCTAACAGACTT
Found at i:97432872 original size:32 final size:32
Alignment explanation
Indices: 97432831--97432895 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
97432821 TCGGCTGCAA
97432831 TTGGGGGAGTCATTCGAGATGTTAATGGTATT
1 TTGGGGGAGTCATTCGAGATGTTAATGGTATT
*
97432863 TTGGGGGAGTCATTCGAGATGTTGATGGTATT
1 TTGGGGGAGTCATTCGAGATGTTAATGGTATT
97432895 T
1 T
97432896 AGTTATGTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.20, C:0.06, G:0.35, T:0.38
Consensus pattern (32 bp):
TTGGGGGAGTCATTCGAGATGTTAATGGTATT
Found at i:97434823 original size:3 final size:3
Alignment explanation
Indices: 97434803--97434932 Score: 68
Period size: 3 Copynumber: 42.7 Consensus size: 3
97434793 TTTGTTTTTC
* * *
97434803 TAT TAT CAT TAT TA- TAT TAT TAT TAT TTT TCAT GTACA TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TA-T TAT TAT TAT
* * * * * *
97434849 ATAT TAT TTT TAT GAT TAT TAT T-G TATT TAT TTT TAC TAC TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * *
97434895 TTT TAT TAT TAG TAT TAG TAT TAT AAT TAC TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
97434933 CACTTATATA
Statistics
Matches: 93, Mismatches: 26, Indels: 16
0.69 0.19 0.12
Matches are distributed among these distances:
2 4 0.04
3 81 0.87
4 7 0.08
5 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:97434868 original size:24 final size:24
Alignment explanation
Indices: 97434805--97434904 Score: 87
Period size: 24 Copynumber: 4.0 Consensus size: 24
97434795 TGTTTTTCTA
*
97434805 TTATCATTATTATATTATTATTATTT
1 TTATGATTATTAT-TTA-TATTATTT
*
97434831 TTCATGTACATATTATTTATATTATTT
1 TT-ATG-A-TTATTATTTATATTATTT
97434858 TTATGATTATTATTGTAT-TTATTT
1 TTATGATTATTATT-TATATTATTT
* *
97434882 TTACT-ACTATTATTTTTATTATT
1 TTA-TGATTATTATTTATATTATT
97434905 AGTATTAGTA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
23 2 0.03
24 29 0.46
25 5 0.08
26 5 0.08
27 12 0.19
28 4 0.06
29 6 0.10
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (24 bp):
TTATGATTATTATTTATATTATTT
Found at i:97434925 original size:39 final size:39
Alignment explanation
Indices: 97434850--97434932 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
97434840 ATATTATTTA
* **
97434850 TATTATTTTTATGATTATTATTGTATTTATTTTTACTAC
1 TATTATTTTTATGATTAGTATTGTATTTATAATTACTAC
* *
97434889 TATTATTTTTATTATTAGTATTAGTA-TTATAATTACTAT
1 TATTATTTTTATGATTAGTATT-GTATTTATAATTACTAC
97434928 TATTA
1 TATTA
97434933 CACTTATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 35 0.92
40 3 0.08
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (39 bp):
TATTATTTTTATGATTAGTATTGTATTTATAATTACTAC
Found at i:97435121 original size:14 final size:14
Alignment explanation
Indices: 97435102--97435128 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97435092 CATCATGTTT
97435102 TTTTAATACTATAC
1 TTTTAATACTATAC
97435116 TTTTAATACTATA
1 TTTTAATACTATA
97435129 TTATGTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTAATACTATAC
Found at i:97435209 original size:64 final size:61
Alignment explanation
Indices: 97435129--97435253 Score: 153
Period size: 64 Copynumber: 2.0 Consensus size: 61
97435119 TAATACTATA
* *
97435129 TTATGTATATATTTTTACAT-GTATTATGTACATATTTTCAATAACTATATCATATGTATATATT
1 TTATGTACATACTTTTA-ATAGTATTATGTACATATTTTCAAT-A-TATAT-ATATGTATATATT
* ** *
97435193 TTATGTACATACTTTTAATATTATTATGTATTTATTTTTAATATATATATATGTATATATT
1 TTATGTACATACTTTTAATAGTATTATGTACATATTTTCAATATATATATATGTATATATT
97435254 CATGTAGTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
61 13 0.24
62 5 0.09
63 3 0.06
64 33 0.61
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (61 bp):
TTATGTACATACTTTTAATAGTATTATGTACATATTTTCAATATATATATATGTATATATT
Found at i:97435236 original size:23 final size:23
Alignment explanation
Indices: 97435111--97435194 Score: 53
Period size: 23 Copynumber: 3.3 Consensus size: 23
97435101 TTTTTAATAC
*
97435111 TATACTTTTAATACTATATTATGTA
1 TATATTTTTAATA-T-TATTATGTA
*
97435136 TATATTTTTACAT-GTATTATGTA
1 TATATTTTTA-ATATTATTATGTA
* *
97435159 CATATTTTCAATAACTATATCATATGTA
1 TATATTTTTAAT-A-T-TAT--TATGTA
97435187 TATATTTT
1 TATATTTT
97435195 ATGTACATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
22 2 0.04
23 17 0.37
25 9 0.20
26 5 0.11
28 13 0.28
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.52
Consensus pattern (23 bp):
TATATTTTTAATATTATTATGTA
Found at i:97435238 original size:25 final size:24
Alignment explanation
Indices: 97435185--97435253 Score: 72
Period size: 23 Copynumber: 2.9 Consensus size: 24
97435175 ATATCATATG
* *
97435185 TATATATT-TTATGTACATACTTT
1 TATATATTATTATGTATATATTTT
*
97435208 TA-ATATTATTATGTATTTATTTT
1 TATATATTATTATGTATATATTTT
97435231 TA-ATATATATATATGTATATATT
1 TATATAT-TAT-TATGTATATATT
97435254 CATGTAGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.13
23 20 0.51
24 3 0.08
25 11 0.28
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (24 bp):
TATATATTATTATGTATATATTTT
Found at i:97435463 original size:27 final size:26
Alignment explanation
Indices: 97435416--97435509 Score: 100
Period size: 27 Copynumber: 3.6 Consensus size: 26
97435406 ATTATATTAC
* *
97435416 ATTTTTTACATATTATCTTATGTATAT
1 ATTTTTTA-ATACTATATTATGTATAT
*
97435443 ATTTTTTAATAACTATATTATGTATGT
1 ATTTTTTAAT-ACTATATTATGTATAT
** * *
97435470 ATTTTTTAACGCTATATTATGTACAC
1 ATTTTTTAATACTATATTATGTATAT
97435496 A-TTTTTAATACTAT
1 ATTTTTTAATACTAT
97435510 GTATATACCT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
25 11 0.20
26 15 0.27
27 30 0.54
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (26 bp):
ATTTTTTAATACTATATTATGTATAT
Found at i:97439370 original size:27 final size:28
Alignment explanation
Indices: 97439340--97439392 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
97439330 TGAAATCAAC
97439340 ACTAAAATTCTTGCAT-ATTTATTCATG
1 ACTAAAATTCTTGCATCATTTATTCATG
* * *
97439367 ACTAACATTCTTTCGTCATTTATTCA
1 ACTAAAATTCTTGCATCATTTATTCA
97439393 ACATTCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (28 bp):
ACTAAAATTCTTGCATCATTTATTCATG
Found at i:97439395 original size:22 final size:22
Alignment explanation
Indices: 97439370--97439424 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
97439360 ATTCATGACT
97439370 AACATTC-TTTCGTCATTTATTC
1 AACATTCATTT-GTCATTTATTC
97439392 AACATTCATTTGTCATTTATTC
1 AACATTCATTTGTCATTTATTC
*
97439414 ATTCATTCATT
1 A-ACATTCATT
97439425 CATTGCATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 19 0.63
23 11 0.37
ACGTcount: A:0.25, C:0.20, G:0.04, T:0.51
Consensus pattern (22 bp):
AACATTCATTTGTCATTTATTC
Found at i:97448230 original size:6 final size:6
Alignment explanation
Indices: 97448216--97448245 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
97448206 CCGGAAATCA
*
97448216 CCTCAC CCTCTC CCTCTC CCTCTC CCTCTC
1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC
97448246 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.03, C:0.67, G:0.00, T:0.30
Consensus pattern (6 bp):
CCTCTC
Found at i:97448752 original size:12 final size:12
Alignment explanation
Indices: 97448737--97448766 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
97448727 ATATTATTAA
*
97448737 TATTATTACTAT
1 TATTATCACTAT
97448749 TATTATCACTAT
1 TATTATCACTAT
97448761 TATTAT
1 TATTAT
97448767 ATCATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTATCACTAT
Found at i:97448804 original size:18 final size:18
Alignment explanation
Indices: 97448714--97448952 Score: 72
Period size: 18 Copynumber: 12.9 Consensus size: 18
97448704 TTAAATATTC
97448714 TTATTATTT-TT-TTATA
1 TTATTATTTATTATTATA
*
97448730 TTATTA-ATATTATTACTA
1 TTATTATTTATTATTA-TA
*
97448748 TTATTATCACTATTATTATA
1 TTATTAT--TTATTATTATA
* *
97448768 TCA-TATTT-TCTTTTCATA
1 TTATTATTTAT-TATT-ATA
97448786 TTATTATTTATTATTATA
1 TTATTATTTATTATTATA
* ****
97448804 TCTACT-TTTA--CCCCTA
1 T-TATTATTTATTATTATA
97448820 TTA-TATTTATTATTAATA
1 TTATTATTTATTATT-ATA
*
97448838 TTAGTATATATATTATTATA
1 TTA-T-TATTTATTATTATA
* *
97448858 TACATATACTTTTTTA-TATA
1 T-TAT-TA-TTTATTATTATA
*
97448878 GTATTATCTT-TT-TCTACTA
1 TTATTAT-TTATTAT-TA-TA
97448897 TTA-TATTTATTATTATA
1 TTATTATTTATTATTATA
*
97448914 TTATTTATTATCACTATTATTA
1 TTA-TTATT-T-ATTATTA-TA
* *
97448936 TTATTTTTTATCATTAT
1 TTATTATTTATTATTAT
97448953 TATACATATA
Statistics
Matches: 165, Mismatches: 27, Indels: 60
0.65 0.11 0.24
Matches are distributed among these distances:
14 1 0.01
15 7 0.04
16 12 0.07
17 17 0.10
18 40 0.24
19 30 0.18
20 19 0.12
21 34 0.21
22 5 0.03
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (18 bp):
TTATTATTTATTATTATA
Found at i:97448920 original size:15 final size:16
Alignment explanation
Indices: 97448900--97448940 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
97448890 TCTACTATTA
97448900 TATTTATTATTA-TAT
1 TATTTATTATTACTAT
*
97448915 TATTTATTATCACTAT
1 TATTTATTATTACTAT
97448931 TA-TTATTATT
1 TATTTATTATT
97448941 TTTTATCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTATTATTACTAT
Found at i:97448940 original size:22 final size:22
Alignment explanation
Indices: 97448907--97448955 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
97448897 TTATATTTAT
97448907 TATTA-TATTATTTATTATCAC
1 TATTATTATTATTTATTATCAC
* *
97448928 TATTATTATTATTTTTTATCAT
1 TATTATTATTATTTATTATCAC
97448950 TATTAT
1 TATTAT
97448956 ACATATATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTATTATTATTTATTATCAC
Found at i:97449127 original size:28 final size:30
Alignment explanation
Indices: 97449094--97449160 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 30
97449084 TTTTTTAAAA
* *
97449094 TATTATATTTTTCATA-TATTATGTAT-TTT
1 TATTATATTTATCATATTATT-CGTATATTT
*
97449123 T-TTATATATATCATATTATTCGTATATTT
1 TATTATATTTATCATATTATTCGTATATTT
97449152 TATTATATT
1 TATTATATT
97449161 ATGTATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
28 16 0.52
29 9 0.29
30 6 0.19
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (30 bp):
TATTATATTTATCATATTATTCGTATATTT
Found at i:97449139 original size:37 final size:37
Alignment explanation
Indices: 97449079--97449150 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
97449069 CTTGTATTGG
* *
97449079 GTATATTTTTTAAAATATTATATTTTTCATATATTAT
1 GTATATTTTTTAAAATATCATATTATTCATATATTAT
* *
97449116 GTAT-TTTTTTATATATATCATATTATTCGTATATT
1 GTATATTTTTTA-AAATATCATATTATTCATATATT
97449151 TTATTATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 7 0.23
37 23 0.77
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (37 bp):
GTATATTTTTTAAAATATCATATTATTCATATATTAT
Found at i:97449180 original size:26 final size:27
Alignment explanation
Indices: 97449153--97449224 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 27
97449143 CGTATATTTT
97449153 ATTATATTATG--TAT-TTTTT-AATA
1 ATTATATTATGTATATATTTTTAAATA
97449176 ATTATATTATGTATATATTTTTAAAT-
1 ATTATATTATGTATATATTTTTAAATA
* *
97449202 ATCATACTAT-TAATATATTTTTA
1 ATTATATTATGT-ATATATTTTTA
97449225 TGTTATTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 11 0.26
25 4 0.10
26 24 0.57
27 3 0.07
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (27 bp):
ATTATATTATGTATATATTTTTAAATA
Found at i:97449243 original size:26 final size:26
Alignment explanation
Indices: 97449214--97449307 Score: 95
Period size: 26 Copynumber: 3.7 Consensus size: 26
97449204 CATACTATTA
*
97449214 ATATATTTTTATGTTATTTCATGTAT
1 ATATATTTTTATATTATTTCATGTAT
97449240 ATATATTTTTATATTA-TT-A-GTTAT
1 ATATATTTTTATATTATTTCATG-TAT
* *
97449264 AAATATTTTTTATACTATTTCATGTAT
1 ATATA-TTTTTATATTATTTCATGTAT
* * *
97449291 GTCTTTTTTTATATTAT
1 ATATATTTTTATATTAT
97449308 CCTTATTATT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
23 1 0.02
24 8 0.15
25 12 0.22
26 28 0.51
27 5 0.09
28 1 0.02
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (26 bp):
ATATATTTTTATATTATTTCATGTAT
Found at i:97454507 original size:85 final size:84
Alignment explanation
Indices: 97454387--97454543 Score: 197
Period size: 85 Copynumber: 1.9 Consensus size: 84
97454377 AAGTCATTGT
* * * * *
97454387 TTTTCTTTTGCACTCATTTGGATACTTGAATTTTCAAAATGCATAAAAAAGACTCTAAAACCTTT
1 TTTTCTTTTGCACTCAGTTGGATACTTGAAATTTCAAAATACATAAAAAACACCCTAAAA-CTTT
*
97454452 TTTTAAAATAATTAAGTCCC
65 TTTCAAAATAATTAAGTCCC
* * * * * *
97454472 TTTTGTTTTGCACTTAGTTGGGTTCTTGAAATTTCAAAATACATCAAAAACACCCTCAAACTTTT
1 TTTTCTTTTGCACTCAGTTGGATACTTGAAATTTCAAAATACATAAAAAACACCCTAAAACTTTT
97454537 TTCAAAA
66 TTCAAAA
97454544 AAAACAATTA
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
84 11 0.18
85 49 0.82
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.39
Consensus pattern (84 bp):
TTTTCTTTTGCACTCAGTTGGATACTTGAAATTTCAAAATACATAAAAAACACCCTAAAACTTTT
TTCAAAATAATTAAGTCCC
Found at i:97454671 original size:10 final size:10
Alignment explanation
Indices: 97454642--97454755 Score: 55
Period size: 10 Copynumber: 12.0 Consensus size: 10
97454632 AGAAAAATTC
*
97454642 AAATATTAAA
1 AAATATAAAA
* *
97454652 AATTAGAAAA
1 AAATATAAAA
97454662 AAATAT--AA
1 AAATATAAAA
97454670 AAATCAT-AAA
1 AAAT-ATAAAA
97454680 AAATATAAAA
1 AAATATAAAA
* *
97454690 AATTGT-AAA
1 AAATATAAAA
* *
97454699 ATAT-TATAA
1 AAATATAAAA
97454708 AAATAT-AAA
1 AAATATAAAA
* *
97454717 AAGT-T-ATA
1 AAATATAAAA
* *
97454725 AAATATATAG
1 AAATATAAAA
97454735 AAATATAAAA
1 AAATATAAAA
97454745 AAATTATAAAA
1 AAA-TATAAAA
97454756 TTTTATAAAG
Statistics
Matches: 76, Mismatches: 20, Indels: 15
0.68 0.18 0.14
Matches are distributed among these distances:
8 13 0.17
9 20 0.26
10 36 0.47
11 7 0.09
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.27
Consensus pattern (10 bp):
AAATATAAAA
Found at i:97454680 original size:18 final size:17
Alignment explanation
Indices: 97454659--97454745 Score: 77
Period size: 18 Copynumber: 4.8 Consensus size: 17
97454649 AAAAATTAGA
97454659 AAAAAATATAAAAATCAT
1 AAAAAATATAAAAAT-AT
*
97454677 AAAAAATATAAAAAATTGT
1 AAAAAATAT-AAAAA-TAT
*
97454696 AAAATATTATAAAAATAT
1 AAAA-AATATAAAAATAT
*
97454714 AAAAAGT-TATAAAATAT
1 AAAAAATATA-AAAATAT
*
97454731 ATAGAAATATAAAAA
1 A-AAAAATATAAAAA
97454746 AATTATAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
16 2 0.04
17 10 0.18
18 23 0.40
19 17 0.30
20 5 0.09
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAAAATATAAAAATAT
Found at i:97454739 original size:38 final size:36
Alignment explanation
Indices: 97454569--97454764 Score: 109
Period size: 38 Copynumber: 5.4 Consensus size: 36
97454559 CTATTTTTAT
* *
97454569 TAAAAATTAGAAAAAAATATAAAA-A-ATAAAAATCGA
1 TAAAAATTATAAAAAATTATAAAATATATAAAAAT--A
* * * *
97454605 TAAAATTTATAAATAA-TATTAAAT-TTTAGAAAA-A
1 TAAAAATTATAAAAAATTATAAAATATATA-AAAATA
** * * *
97454639 TTCAAA-TATTAAAAATTAGAAAAAAATATAAAAATCA
1 TAAAAATTATAAAAAATTA-TAAAATATATAAAAAT-A
* *
97454676 TAAAAAATATAAAAAATTGTAAAATATTATAAAAATA
1 TAAAAATTATAAAAAATTATAAAATA-TATAAAAATA
* *
97454713 TAAAAAGTTATAAAATA-TATAGAAATATAAAAAAATTA
1 TAAAAA-TTATAAAAAATTATA-AAATATATAAAAA-TA
*
97454751 TAAAATTTTATAAA
1 TAAAA-ATTATAAA
97454765 GTCGTAAGAA
Statistics
Matches: 121, Mismatches: 25, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
33 7 0.06
34 6 0.05
35 13 0.11
36 18 0.15
37 31 0.26
38 46 0.38
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (36 bp):
TAAAAATTATAAAAAATTATAAAATATATAAAAATA
Found at i:97454756 original size:28 final size:27
Alignment explanation
Indices: 97454658--97454756 Score: 105
Period size: 28 Copynumber: 3.6 Consensus size: 27
97454648 TAAAAATTAG
*
97454658 AAAAAAA-TATAAAA-ATCATAAAAAAT
1 AAAAAAATTATAAAATAT-ATAAAATAT
*
97454684 ATAAAAAATTGTAAAATATTATAAAA-AT
1 A-AAAAAATTATAAAATA-TATAAAATAT
*
97454712 ATAAAAAGTTATAAAATATATAGAAATAT
1 A-AAAAAATTATAAAATATATA-AAATAT
97454741 AAAAAAATTATAAAAT
1 AAAAAAATTATAAAAT
97454757 TTTATAAAGT
Statistics
Matches: 63, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 10 0.16
28 41 0.65
29 10 0.16
30 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (27 bp):
AAAAAAATTATAAAATATATAAAATAT
Found at i:97455132 original size:18 final size:19
Alignment explanation
Indices: 97455111--97455155 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
97455101 AATAAATTTG
* *
97455111 AAAATTTTATATTTTAT-T
1 AAAATTTAATAATTTATCT
97455129 AAAATTTAATAATTTATCT
1 AAAATTTAATAATTTATCT
97455148 AAAATTTA
1 AAAATTTA
97455156 TTTTTTCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAAATTTAATAATTTATCT
Found at i:97455150 original size:19 final size:18
Alignment explanation
Indices: 97455098--97455155 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
97455088 AGTTCTAATT
* *
97455098 TTTAATAAATT-TGAAAA
1 TTTAATAATTTATTAAAA
* *
97455115 TTTTATATTTTATTAAAA
1 TTTAATAATTTATTAAAA
97455133 TTTAATAATTTATCTAAAA
1 TTTAATAATTTAT-TAAAA
97455152 TTTA
1 TTTA
97455156 TTTTTTCTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 8 0.24
18 16 0.48
19 9 0.27
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TTTAATAATTTATTAAAA
Found at i:97455348 original size:88 final size:89
Alignment explanation
Indices: 97455194--97455409 Score: 280
Period size: 88 Copynumber: 2.4 Consensus size: 89
97455184 AGAGCAGGGC
*
97455194 CTTAATTGCTTTTTTGAAAAATTTTGAGGGAC-TTTTTGATGCATTTTGAAAGTTCAAGTATCCA
1 CTTAATTGCTTTTTTGAAAAAGTTTGAGGG-CTTTTTTGATGCATTTTGAAAGTTCAAGTATCCA
*
97455258 ATTGAGTGAAAAAAATAA-AGGAA-
65 ATTGAGTGAAAAAAACAAGAGGAAG
* *
97455281 CTTAATTGCTTTTTTGAAGAAA-TTTGAGGGCCTTTTTTTATGCATTTTGAAAGTTCAAGT-GCT
1 CTTAATTGCTTTTTTGAA-AAAGTTTGAGGG-CTTTTTTGATGCATTTTGAAAGTTCAAGTATC-
**
97455344 CAATTGAGTTCAAAAAACAAGAGGAAGGG
63 CAATTGAGTGAAAAAAACAAGAGGAA--G
97455373 CTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCTTTTT
1 CTTAATTGC-TTTTTTGAAAAAGTTTGAGGGCTTTTT
97455410 ACACCCTTAA
Statistics
Matches: 114, Mismatches: 6, Indels: 13
0.86 0.05 0.10
Matches are distributed among these distances:
87 28 0.25
88 46 0.40
89 5 0.04
92 18 0.16
93 17 0.15
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (89 bp):
CTTAATTGCTTTTTTGAAAAAGTTTGAGGGCTTTTTTGATGCATTTTGAAAGTTCAAGTATCCAA
TTGAGTGAAAAAAACAAGAGGAAG
Found at i:97457883 original size:136 final size:134
Alignment explanation
Indices: 97457713--97457982 Score: 441
Period size: 136 Copynumber: 2.0 Consensus size: 134
97457703 GAAATAAACT
* *
97457713 TTTAGAAAAATGAAAATATCTGGAGTTTCAAGAAAAGAGAATTTCCTTTTCTCTATCTCCAGATT
1 TTTAGAAAAATGAAAATATCCGGAGTTTCAAGAAAAGAGAATTTCCATTTCTCTATCTCCAGATT
* * *
97457778 TATTGATTTATGTGATTATGTTAGGAAAGACATAGAAAAAGCTACCGACTCTTACCCTTTTTTTG
66 CATTGATATATGTGATTATGTCAGGAAAGACATAG-AAAAGCTACCGACTCTTA-CCTTTTTTTG
97457843 ACTATA
129 ACTATA
* *
97457849 TTTAGAAAAATGAAAATATCCGGAGTTTCGAGAAAAGAGAATTTCCATTTCTCTATGTCCAGATT
1 TTTAGAAAAATGAAAATATCCGGAGTTTCAAGAAAAGAGAATTTCCATTTCTCTATCTCCAGATT
* *
97457914 CATTGATATATGTGATTATGTCAGGAAAGGCATAGAAAAGCTACCGACTCTTACCTTTTTTTGCC
66 CATTGATATATGTGATTATGTCAGGAAAGACATAGAAAAGCTACCGACTCTTACCTTTTTTTGAC
97457979 TATA
131 TATA
97457983 AATATACTTA
Statistics
Matches: 125, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
134 15 0.12
135 18 0.14
136 92 0.74
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (134 bp):
TTTAGAAAAATGAAAATATCCGGAGTTTCAAGAAAAGAGAATTTCCATTTCTCTATCTCCAGATT
CATTGATATATGTGATTATGTCAGGAAAGACATAGAAAAGCTACCGACTCTTACCTTTTTTTGAC
TATA
Done.