Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 293 of 332
Found at i:97463596 original size:18 final size:19
Alignment explanation
Indices: 97463573--97463608 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
97463563 ATTTAGAGTC
97463573 AAATTT-AATTAAAAAATA
1 AAATTTAAATTAAAAAATA
97463591 AAATTTAAATTAAAAAAT
1 AAATTTAAATTAAAAAAT
97463609 GTAAAGAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATTTAAATTAAAAAATA
Found at i:97464305 original size:95 final size:95
Alignment explanation
Indices: 97464169--97464355 Score: 272
Period size: 95 Copynumber: 2.0 Consensus size: 95
97464159 TGTTTTCAAT
* * *
97464169 TTTTTAATTAAGAACTCTTTTATTTATTTAAATAAAATAATAAATATTTAATTATATAATAAATA
1 TTTTTAATTAAGAACTCCTTTATTTATATAAATAAAATAATAAATATGTAATTATATAAT--A-A
97464234 AATATTTTT-ATA-TATCATTATGTTAAAATTA
63 AATATTTTTGATATTATCATTATGTTAAAATTA
* *
97464265 TTTTTAATTAATAACTCCTTT-TTTATATAAATAAATTAATAAATATGTAATTATATAATAAAAT
1 TTTTTAATTAAGAACTCCTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAT
97464329 ATTTTTGATATTTATCATTATGTTAAA
66 ATTTTTGATA-TTATCATTATGTTAAA
97464356 TATATATATA
Statistics
Matches: 83, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
92 10 0.12
93 4 0.05
95 50 0.60
96 19 0.23
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (95 bp):
TTTTTAATTAAGAACTCCTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAAT
ATTTTTGATATTATCATTATGTTAAAATTA
Found at i:97465320 original size:22 final size:22
Alignment explanation
Indices: 97465295--97465339 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
97465285 AGTAGAATTC
97465295 GAAACCTTATCAAA-ACTACCTT
1 GAAACCTTATCAAACA-TACCTT
97465317 GAAACCTTATCAAACATACCTT
1 GAAACCTTATCAAACATACCTT
97465339 G
1 G
97465340 TATAGCTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (22 bp):
GAAACCTTATCAAACATACCTT
Found at i:97593133 original size:15 final size:16
Alignment explanation
Indices: 97593113--97593155 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
97593103 TTTAATCATT
97593113 TATAAATTATAAAT-A
1 TATAAATTATAAATAA
97593128 TATAAATTAT-AATAA
1 TATAAATTATAAATAA
*
97593143 TATAAAATATAAA
1 TATAAATTATAAA
97593156 AAATTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 3 0.12
15 20 0.80
16 2 0.08
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TATAAATTATAAATAA
Found at i:97593156 original size:7 final size:7
Alignment explanation
Indices: 97593113--97593156 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
97593103 TTTAATCATT
*
97593113 TATAAAT
1 TATAAAA
97593120 TATAAATA
1 TATAAA-A
*
97593128 TATAAAT
1 TATAAAA
97593135 TATAATAA
1 TATAA-AA
97593143 TATAAAA
1 TATAAAA
97593150 TATAAAA
1 TATAAAA
97593157 AATTAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
7 20 0.62
8 12 0.38
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
TATAAAA
Found at i:97593959 original size:16 final size:17
Alignment explanation
Indices: 97593927--97593968 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
97593917 AATTGATCAT
97593927 TAAAT-ATATATTAATA
1 TAAATAATATATTAATA
*
97593943 TAAATAATAT-TTTATA
1 TAAATAATATATTAATA
*
97593959 TCAATAATAT
1 TAAATAATAT
97593969 GATAATCCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAATAATATATTAATA
Found at i:97600625 original size:21 final size:22
Alignment explanation
Indices: 97600601--97600642 Score: 68
Period size: 21 Copynumber: 1.9 Consensus size: 22
97600591 AATAAAGTAG
97600601 ATTATATATTAT-TTTTTTAGT
1 ATTATATATTATATTTTTTAGT
97600622 ATTATATATTATGATTTTTTA
1 ATTATATATTAT-ATTTTTTA
97600643 ATTCATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (22 bp):
ATTATATATTATATTTTTTAGT
Found at i:97600957 original size:16 final size:16
Alignment explanation
Indices: 97600936--97600989 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
97600926 TGAATTACTT
*
97600936 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
**
97600952 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTCC
* *
97600968 ATTACAACCCTATTCC
1 ATTACAGCTCTATTCC
97600984 ATTACA
1 ATTACA
97600990 ACCAACCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.31, C:0.26, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:97601846 original size:29 final size:29
Alignment explanation
Indices: 97601797--97601852 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
97601787 AAAATTGAAT
*
97601797 CAAAATAATATTTCATATATAAAATTATA
1 CAAAATAAAATTTCATATATAAAATTATA
* *
97601826 CAAAATTAAAATTT-ATGTATAGAATTA
1 CAAAA-TAAAATTTCATATATAAAATTA
97601853 CAAATTTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.38
Consensus pattern (29 bp):
CAAAATAAAATTTCATATATAAAATTATA
Found at i:97615782 original size:25 final size:25
Alignment explanation
Indices: 97615719--97615800 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
97615709 AGTCTACTAC
* * *
97615719 AGTTTTAGTATACACTATCTAGAGT
1 AGTTTTAGAATATACTATCTACAGT
* * *
97615744 -GTCTTCACAGTATACTATCTACAGT
1 AGT-TTTAGAATATACTATCTACAGT
* *
97615769 AGTTTTAGAATATACTTTCTACAAT
1 AGTTTTAGAATATACTATCTACAGT
*
97615794 ATTTTTA
1 AGTTTTA
97615801 ATTCAAACTT
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
24 2 0.05
25 39 0.91
26 2 0.05
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.43
Consensus pattern (25 bp):
AGTTTTAGAATATACTATCTACAGT
Found at i:97617510 original size:24 final size:24
Alignment explanation
Indices: 97617482--97617530 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
97617472 TATATCAGTA
97617482 ATCATGCATAATTTATCATACATG
1 ATCATGCATAATTTATCATACATG
97617506 ATCATGCATAATTTATCATACATG
1 ATCATGCATAATTTATCATACATG
97617530 A
1 A
97617531 CATACACTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (24 bp):
ATCATGCATAATTTATCATACATG
Found at i:97618108 original size:13 final size:13
Alignment explanation
Indices: 97618090--97618116 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97618080 AAATAAAGTT
97618090 AGACCCAAATCAA
1 AGACCCAAATCAA
97618103 AGACCCAAATCAA
1 AGACCCAAATCAA
97618116 A
1 A
97618117 CTATTCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.30, G:0.07, T:0.07
Consensus pattern (13 bp):
AGACCCAAATCAA
Found at i:97636829 original size:18 final size:18
Alignment explanation
Indices: 97636806--97636865 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
97636796 CAGTTTAGGT
97636806 TGAGCTCGTAGCTTTAAG
1 TGAGCTCGTAGCTTTAAG
* *
97636824 TGAGCTCGTAGGTGT-AG
1 TGAGCTCGTAGCTTTAAG
* * *
97636841 ATGAGCTTGTAGCTTCAAA
1 -TGAGCTCGTAGCTTTAAG
97636860 TGAGCT
1 TGAGCT
97636866 GGCAAATGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (18 bp):
TGAGCTCGTAGCTTTAAG
Found at i:97640834 original size:27 final size:26
Alignment explanation
Indices: 97640794--97640844 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
97640784 AATTTAAATT
* *
97640794 ACAATTATTTTTAAACTTGTAATTACC
1 ACAATTATTATTAAA-TTATAATTACC
*
97640821 ACAATTCTTATTAAATTATAATTA
1 ACAATTATTATTAAATTATAATTA
97640845 TTTTGCAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
ACAATTATTATTAAATTATAATTACC
Found at i:97640988 original size:14 final size:14
Alignment explanation
Indices: 97640969--97641122 Score: 148
Period size: 14 Copynumber: 11.1 Consensus size: 14
97640959 TCGTACTTAC
97640969 ATATATATATATAT
1 ATATATATATATAT
* *
97640983 ATATATGTATACAT
1 ATATATATATATAT
* *
97640997 ATATATGTATATGT
1 ATATATATATATAT
* *
97641011 ATACATATATATGT
1 ATATATATATATAT
* *
97641025 ATACATATATATAA
1 ATATATATATATAT
*
97641039 ATATACATATATAT
1 ATATATATATATAT
* *
97641053 ACATATATATGTAT
1 ATATATATATATAT
* *
97641067 ACATATATATAAAT
1 ATATATATATATAT
* *
97641081 ATACATATATATGT
1 ATATATATATATAT
*
97641095 ATACATATATATAT
1 ATATATATATATAT
*
97641109 GTATATATAT-TAT
1 ATATATATATATAT
97641122 A
1 A
97641123 AATTAATTAT
Statistics
Matches: 116, Mismatches: 24, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
13 3 0.03
14 113 0.97
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (14 bp):
ATATATATATATAT
Found at i:97641046 original size:30 final size:30
Alignment explanation
Indices: 97640969--97641125 Score: 121
Period size: 30 Copynumber: 5.3 Consensus size: 30
97640959 TCGTACTTAC
* *
97640969 ATATATATATATATATATATGTATACATAT
1 ATATAAATATACATATATATGTATACATAT
*
97640999 ATATGTATATGTATACATATATATGTATACATAT
1 ATA--TA-A-ATATACATATATATGTATACATAT
97641033 ATATAAATATAC--ATATA--TATACATAT
1 ATATAAATATACATATATATGTATACATAT
* *
97641059 ATAT--GTATACATATATATAAATATACATAT
1 ATATAAATATACATATATAT--GTATACATAT
** * * *
97641089 ATATGTATACATATATATATGTATATATAT
1 ATATAAATATACATATATATGTATACATAT
97641119 -TATAAAT
1 ATATAAAT
97641126 TAATTATAGA
Statistics
Matches: 103, Mismatches: 12, Indels: 25
0.74 0.09 0.18
Matches are distributed among these distances:
24 5 0.05
26 18 0.17
28 5 0.05
29 5 0.05
30 29 0.28
31 1 0.01
32 15 0.15
34 25 0.24
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.43
Consensus pattern (30 bp):
ATATAAATATACATATATATGTATACATAT
Found at i:97641054 original size:40 final size:40
Alignment explanation
Indices: 97640971--97641092 Score: 175
Period size: 40 Copynumber: 3.2 Consensus size: 40
97640961 GTACTTACAT
* *
97640971 ATATATATATATATATATGTATAC--ATATAT--ATGT--
1 ATATATATACATATATATGTATACATATATATAAATATAC
*
97641005 ATATGTATACATATATATGTATACATATATATAAATATAC
1 ATATATATACATATATATGTATACATATATATAAATATAC
97641045 ATATATATACATATATATGTATACATATATATAAATATAC
1 ATATATATACATATATATGTATACATATATATAAATATAC
97641085 ATATATAT
1 ATATATAT
97641093 GTATACATAT
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
34 22 0.28
36 6 0.08
38 3 0.04
40 47 0.60
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.43
Consensus pattern (40 bp):
ATATATATACATATATATGTATACATATATATAAATATAC
Found at i:97641114 original size:40 final size:40
Alignment explanation
Indices: 97640970--97641117 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 40
97640960 CGTACTTACA
* * * * *
97640970 TATATATATATATATATATGTATACATATATATGTATATG
1 TATACATATATATATATATATATAAATATACATATATATG
*
97641010 TATACATATATATGTATACATATATATAAATATACATATATATA
1 TATACATATATA--TAT--ATATATATAAATATACATATATATG
* * * *
97641054 CATATATATGTATACATATATATAAATATACATATATATG
1 TATACATATATATATATATATATAAATATACATATATATG
*
97641094 TATACATATATATATGTATATATA
1 TATACATATATATATATATATATA
97641118 TTATAAATTA
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
40 54 0.61
42 5 0.06
44 29 0.33
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.43
Consensus pattern (40 bp):
TATACATATATATATATATATATAAATATACATATATATG
Found at i:97641178 original size:3 final size:3
Alignment explanation
Indices: 97641170--97641221 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
97641160 AATTCATGAC
*
97641170 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
97641218 TTA T
1 TTA T
97641222 CATCATCAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:97642639 original size:61 final size:61
Alignment explanation
Indices: 97642559--97642690 Score: 203
Period size: 61 Copynumber: 2.2 Consensus size: 61
97642549 GGGGTGGCTT
*
97642559 AGGCCGTGTTAGAGTCTGCTAAATAGACAAAGGCGTGTTGTCTA-CTCGTGTAAAGAAGTCC
1 AGGCCGTGTTAGAGTCTGCTAAATAGACAAAGGCGTGTGGTCTACCT-GTGTAAAGAAGTCC
* ** *
97642620 AGGCTGTGTTAGAGTCTGCTAAATAGACACGGGCGTGTGGTCTACCTGTGTAAGGAAGTCC
1 AGGCCGTGTTAGAGTCTGCTAAATAGACAAAGGCGTGTGGTCTACCTGTGTAAAGAAGTCC
97642681 AGGCCGTGTT
1 AGGCCGTGTT
97642691 GATTTTCCAC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 62 0.97
62 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (61 bp):
AGGCCGTGTTAGAGTCTGCTAAATAGACAAAGGCGTGTGGTCTACCTGTGTAAAGAAGTCC
Found at i:97651267 original size:61 final size:61
Alignment explanation
Indices: 97651186--97651315 Score: 179
Period size: 61 Copynumber: 2.1 Consensus size: 61
97651176 AGTGGCTTAG
* * *
97651186 GCCATGTTAGAGTCTACTAAATAGACAAGGGCATGTGGTCTACCCGTGTAAGGAAGTCCAA
1 GCCATGTTAGAGTATACTAAACAGACAAGGGCATGTAGTCTACCCGTGTAAGGAAGTCCAA
* * ** *
97651247 GCCATGTTAGAGTATGCTAAACAGACACGGGTGTGTAGTCTACCCGTGTAAGGAAGTCCAG
1 GCCATGTTAGAGTATACTAAACAGACAAGGGCATGTAGTCTACCCGTGTAAGGAAGTCCAA
*
97651308 GTCATGTT
1 GCCATGTT
97651316 GATTTCCCAC
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (61 bp):
GCCATGTTAGAGTATACTAAACAGACAAGGGCATGTAGTCTACCCGTGTAAGGAAGTCCAA
Found at i:97652616 original size:45 final size:45
Alignment explanation
Indices: 97652545--97652672 Score: 166
Period size: 45 Copynumber: 2.8 Consensus size: 45
97652535 TAATATGCCT
* * * * * *
97652545 AAAATGAGTAAGACCAAACCTGAAAGACGCTATGGCATCATGATA
1 AAAACGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATA
* *
97652590 AAAACGAGTAAGACCGTAGCTAAAAGATGTTATGACATCATGATA
1 AAAACGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATA
* *
97652635 GAAATGAGTAAGACCATAGCTAAAAGATGTTATGGCAT
1 AAAACGAGTAAGACCATAGCTAAAAGATGTTATGGCAT
97652673 TATGTGAAAC
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (45 bp):
AAAACGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATA
Found at i:97652965 original size:67 final size:67
Alignment explanation
Indices: 97652877--97653085 Score: 222
Period size: 67 Copynumber: 3.1 Consensus size: 67
97652867 GATTATGGGG
* * * ** * *
97652877 GTAAGGCCATAGCTCAACTATGATAACCAATGGAATCCATCAGGACATTAAACATGGAACCTAAT
1 GTAAGACCATAGTTCGACTATGGCAACCAATGGAATCCGTCAGGACATTAAACATGGAACCTAAC
*
97652942 TA
66 GA
* * * * * *
97652944 GTAAGACCATAGTTCGACTATGGCAACCAATGGAGTTCGCCAAGACATTAAACATGGAACATGAC
1 GTAAGACCATAGTTCGACTATGGCAACCAATGGAATCCGTCAGGACATTAAACATGGAACCTAAC
*
97653009 GG
66 GA
* * * * *
97653011 GTAAGACCATAGTTTGACTATGGCAACCAATGG-AGCTTGTCAGGATATTAAACATGGAACCTGA
1 GTAAGACCATAGTTCGACTATGGCAACCAATGGAATC-CGTCAGGACATTAAACATGGAACCTAA
97653075 CGA
65 CGA
97653078 GTAAGACC
1 GTAAGACC
97653086 TTAGGTTAGC
Statistics
Matches: 116, Mismatches: 25, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
67 116 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (67 bp):
GTAAGACCATAGTTCGACTATGGCAACCAATGGAATCCGTCAGGACATTAAACATGGAACCTAAC
GA
Found at i:97655327 original size:20 final size:22
Alignment explanation
Indices: 97655293--97655348 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 22
97655283 TTGTCTCAAT
* *
97655293 ACATA-GTCTTAAGACAATG-A
1 ACATATGTCTTGAGACAAAGCA
97655313 AC-TATGTCTTGAGACAAAGCA
1 ACATATGTCTTGAGACAAAGCA
97655334 ACATATGTCTTGAGA
1 ACATATGTCTTGAGA
97655349 TAAAACTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.06
20 14 0.45
21 3 0.10
22 12 0.39
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (22 bp):
ACATATGTCTTGAGACAAAGCA
Found at i:97659193 original size:14 final size:14
Alignment explanation
Indices: 97659174--97659206 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
97659164 TTTTTAAAAT
97659174 AAATAATACATAAA
1 AAATAATACATAAA
*
97659188 AAATAATATATAAA
1 AAATAATACATAAA
97659202 AAATA
1 AAATA
97659207 GTTTTAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATAATACATAAA
Found at i:97659202 original size:30 final size:27
Alignment explanation
Indices: 97659141--97659202 Score: 70
Period size: 30 Copynumber: 2.2 Consensus size: 27
97659131 TACAAGATCT
* *
97659141 TAAAATAAACAATCATAAAATAATTTT
1 TAAAATAAACAATCATAAAATAATATA
*
97659168 TAAAATAAATAATACATAAAAAATAATATA
1 TAAAATAAACAAT-CAT--AAAATAATATA
97659198 TAAAA
1 TAAAA
97659203 AATAGTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 12 0.41
28 3 0.10
30 14 0.48
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (27 bp):
TAAAATAAACAATCATAAAATAATATA
Found at i:97660773 original size:133 final size:133
Alignment explanation
Indices: 97660532--97661049 Score: 757
Period size: 133 Copynumber: 3.9 Consensus size: 133
97660522 TACTGTTTAT
* * * **
97660532 GGAGACAAGATCTACAATCTTTAGCCTATTCCACTACAACTTTAGAGAGATAAAATGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* * * *
97660597 AATTTGCTTCACTGCAACTTAAGGGAGACAAAATTCGCTGTCTTCGATCTGCTCCACTGCAACTT
66 AATTTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAACTT
97660662 CAG
131 CAG
** * *
97660665 GGAGACAAGATCTTTAATTTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGATGGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* *
97660730 AATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCTACTGCAACTT
66 AATTTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAACTT
97660795 CAG
131 CAG
* * * *
97660798 GAAGACAAGATCTACAATCTTCAGCCTACTCTATTACAACTTTAGGGGGATAGGATGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* **
97660863 AATTTGCTTCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCCACTGCAACTT
66 AATTTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAACTT
*
97660928 TAG
131 CAG
* * * * *
97660931 GGAAACATGATCTTCAATCTTCAGCTTACTCCACTACAACTTTAGGGAGATAGGATGGTAGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* * *
97660996 AATTTGTTTCACTGCAACTTTAGGAAGATAAAATTCACCGTCTTCGATCTGCTC
66 AATTTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTC
97661050 TAAGATCTAC
Statistics
Matches: 341, Mismatches: 44, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
133 341 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (133 bp):
GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
AATTTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAACTT
CAG
Found at i:97660922 original size:45 final size:44
Alignment explanation
Indices: 97660601--97660933 Score: 156
Period size: 45 Copynumber: 7.5 Consensus size: 44
97660591 GGCTTAAATT
* * * *
97660601 TGCTTCACTGCAACTTAAGGGAGACAAAATTCGCTGTCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTTGC-GTCTTCGATC
*** * *
97660646 TGCTCCACTGCAACTTCAGGGAGACAAGATCTTTAATTTTC-AGCC
1 TGCTCCACTGCAACTTCAGGGAGACAAGAT-TTGCGTCTTCGA-TC
* * * * * * **
97660691 TACTCCACTACAACTTTAGGGAGATAGGATGATG-G-CTTAAATC
1 TGCTCCACTGCAACTTCAGGGAGACAAGAT-TTGCGTCTTCGATC
* * * **
97660734 TGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGACAAGATT-TGCGTCTTCGATC
* * * * * *
97660779 TGCTCTACTGCAACTTCAGGAAGACAAGATCTACAATCTTC-AGCC
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTTGC-GTCTTCGA-TC
* * * * * * * * * ** *
97660824 TACTCTATTACAACTTTAGGGGGATAGGATGGTG-G-CTTAAATT
1 TGCTCCACTGCAACTTCAGGGAGACAAGAT-TTGCGTCTTCGATC
* *
97660867 TGCTTCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGACAAGATTTG-CGTCTTCGATC
*
97660912 TGCTCCACTGCAACTTTAGGGA
1 TGCTCCACTGCAACTTCAGGGA
97660934 AACATGATCT
Statistics
Matches: 202, Mismatches: 73, Indels: 26
0.67 0.24 0.09
Matches are distributed among these distances:
42 2 0.01
43 48 0.24
44 7 0.03
45 143 0.71
46 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGACAAGATTTGCGTCTTCGATC
Found at i:97661009 original size:266 final size:266
Alignment explanation
Indices: 97660532--97661847 Score: 1772
Period size: 266 Copynumber: 5.0 Consensus size: 266
97660522 TACTGTTTAT
* * * **
97660532 GGAGACAAGATCTACAATCTTTAGCCTATTCCACTACAACTTTAGAGAGATAAAATGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* * * * *
97660597 AATTTGCTTCACTGCAACTTAAGGGAGACAAAATTCGCTGTCTTCGATCTGCTCCACTGCAACTT
66 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
** * * *
97660662 CAGGGAGACAAGATCTTTAATTTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGATGGC
131 CAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTAGC
*
97660727 TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCTACTGCAA
196 TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAA
97660792 CTTCAG
261 CTTCAG
* * * *
97660798 GAAGACAAGATCTACAATCTTCAGCCTACTCTATTACAACTTTAGGGGGATAGGATGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* *
97660863 AATTTGCTTCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCCACTGCAACTT
66 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
* * * * *
97660928 TAGGGAAACATGATCTTCAATCTTCAGCTTACTCCACTACAACTTTAGGGAGATAGGATGGTAGC
131 CAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTAGC
* * * *
97660993 TTAAATTTGTTTCACTGCAACTTTAGGAAGATAAAATTCACCGTCTTCGATCTG-----CT----
196 TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAA
97661049 C-T---
261 CTTCAG
* * * *
97661051 ------AAGATCTACAATCTTTATCCTACTCCACTACAACTTTAGAGAGATAGGATGGCGGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* * *
97661110 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCCTCAATCTGCTCCACTGCAACTT
66 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
** * *
97661175 CAGAAAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGC
131 CAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTAGC
** * *
97661240 TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTTGCCGTCTTCGATCTGCCCCACTGTAA
196 TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAA
*
97661305 CTTTAG
261 CTTCAG
* * *
97661311 GGAGACAAGATCTTCAATCTTCAGCCTACTCCACTACAACTTCAAGGAGATAGGATGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* * * * *
97661376 AATCTGCTTTACTGCAACTTCAGGATGAGAAGATTTGCCGTCTTCGATCTGCTCAACTGCAACTT
66 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
* * * *
97661441 CAGGGAGATAAGATCTACAATCTTCAGCGTACTCCACTACAACTTTAGGTAGACAGGATGGT-GA
131 CAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTAG-
* * * ** *
97661505 CTTAAATCTGCTTCACTGCAATTTCAGGTAGACAAGATTCGTCGTCTTCGATTTGCTCCACTGCA
195 CTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCA
97661570 ACTTCAG
260 ACTTCAG
* * * *
97661577 GGAGATAAGATCTACAATTTTCAGCCTACTCCAGTACAACTTTAGGGAGATAGGATGGTGGCTTG
1 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
* * * * *
97661642 AATCTGCTTCACTGTAACTTCCGAAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTT
66 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
*
97661707 CAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAAGATGGTAGC
131 CAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTAGC
* * *
97661772 TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCACCGTCTTTGATCTGCTCCACTGTAA
196 TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAA
*
97661837 CTTTAG
261 CTTCAG
97661843 GGAGA
1 GGAGA
97661848 AGATCTGTAG
Statistics
Matches: 916, Mismatches: 113, Indels: 42
0.86 0.11 0.04
Matches are distributed among these distances:
247 216 0.24
252 2 0.00
256 2 0.00
257 2 0.00
261 2 0.00
265 1 0.00
266 690 0.75
267 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (266 bp):
GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTA
AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTT
CAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTAGC
TTAAATCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGCAA
CTTCAG
Found at i:97661160 original size:114 final size:114
Alignment explanation
Indices: 97660939--97661163 Score: 306
Period size: 114 Copynumber: 2.0 Consensus size: 114
97660929 AGGGAAACAT
* * * * * *
97660939 GATCTTCAATCTTCAGCTTACTCCACTACAACTTTAGGGAGATAGGATGGTAGCTTAAATTTGTT
1 GATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGCAGCTTAAATCTGCT
* * * *
97661004 TCACTGCAACTTTAGGAAGATAAAATTCACCGTCTTCGATCTGCTCTAA
66 TCACTGCAACTTCAGGAAGACAAAATTCACCGTCCTCAATCTGCTCTAA
* * *
97661053 GATCTACAATCTTTATCCTACTCCACTACAACTTTAGAGAGATAGGATGGCGGCTTAAATCTGCT
1 GATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGCAGCTTAAATCTGCT
* * *
97661118 TCACTGCAACTTCAGGAAGACAAGATTCGCTGTCCTCAATCTGCTC
66 TCACTGCAACTTCAGGAAGACAAAATTCACCGTCCTCAATCTGCTC
97661164 CACTGCAACT
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
114 95 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (114 bp):
GATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGCAGCTTAAATCTGCT
TCACTGCAACTTCAGGAAGACAAAATTCACCGTCCTCAATCTGCTCTAA
Found at i:97661293 original size:133 final size:133
Alignment explanation
Indices: 97661051--97661847 Score: 1157
Period size: 133 Copynumber: 6.0 Consensus size: 133
97661041 GATCTGCTCT
* * *
97661051 AAGATCTACAATCTTTATCCTACTCCACTACAACTTTAGAGAGATAGGATGGCGGCTTAAATCTG
1 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
* * * **
97661116 CTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCCTCAATCTGCTCCACTGCAACTTCAGAAA
66 CTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
97661181 GAC
131 GAC
97661184 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
1 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
* * * * *
97661249 CTTCACTGCAACTTCAGGAAGACAAAATTTGCCGTCTTCGATCTGCCCCACTGTAACTTTAGGGA
66 CTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
97661314 GAC
131 GAC
* *
97661317 AAGATCTTCAATCTTCAGCCTACTCCACTACAACTTCA-AGGAGATAGGATGGTGGCTTAAATCT
1 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGA-GAGATAGGATGGTGGCTTAAATCT
* * * * *
97661381 GCTTTACTGCAACTTCAGGATGAGAAGATTTGCCGTCTTCGATCTGCTCAACTGCAACTTCAGGG
65 GCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
*
97661446 AGAT
130 AGAC
* * *
97661450 AAGATCTACAATCTTCAGCGTACTCCACTACAACTTTAG-GTAGACAGGATGGTGACTTAAATCT
1 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAG-AGATAGGATGGTGGCTTAAATCT
* * * *
97661514 GCTTCACTGCAATTTCAGGTAGACAAGATTCGTCGTCTTCGATTTGCTCCACTGCAACTTCAGGG
65 GCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
*
97661579 AGAT
130 AGAC
* * * *
97661583 AAGATCTACAATTTTCAGCCTACTCCAGTACAACTTTAGGGAGATAGGATGGTGGCTTGAATCTG
1 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
* * * * *
97661648 CTTCACTGTAACTTCCGAAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGGGA
66 CTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
97661713 GAC
131 GAC
* * *
97661716 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAAGATGGTAGCTTAAATCTG
1 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
* * * *
97661781 CTTCACTGCAACTTCAGGAAGACAAGATTCACCGTCTTTGATCTGCTCCACTGTAACTTTAGGGA
66 CTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
97661846 GA
131 GA
97661848 AGATCTGTAG
Statistics
Matches: 594, Mismatches: 66, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
132 2 0.00
133 591 0.99
134 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (133 bp):
AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
CTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
GAC
Found at i:97661511 original size:513 final size:518
Alignment explanation
Indices: 97660538--97661847 Score: 1835
Period size: 513 Copynumber: 2.5 Consensus size: 518
97660528 TTATGGAGAC
* ** *
97660538 AAGATCTACAATCTTTAGCCTATTCCACTACAACTTTAGAGAGATAAAATGGTGGCTTAAATTTG
1 AAGATCTACAATCTTTAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
* * *
97660603 CTTCACTGCAACTTAAGGGAGACAAAATTCGCTGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
66 CTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
** * *
97660668 GACAAGATCTTTAATTTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGATGGCTTAAAT
131 GACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAT
* * *
97660733 CTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCTACTGCAACTTCAG
196 CTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGTAACTTTAG
* * * * * *
97660798 GAAGACAAGATCTACAATCTTCAGCCTACTCTATTACAACTTTAGGGGGATAGGATGGTGGCTTA
261 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTCAAGGAGATAGGATGGTGGCTTA
* *
97660863 AATTTGCTTCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCCACTGCAACTT
326 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCAACTGCAACTT
* * * * *
97660928 TAGGGAAACATGATCTTCAATCTTCAGCTTACTCCACTACAACTTTAGGGAGATAGGATGGTAGC
391 CAGGGAAACAAGATCTACAATCTTCAGCGTACTCCACTACAACTTTAGGGAGACAGGATGGTAGC
* * *
97660993 TTAAATTTGTTTCACTGCAACTTT-AGGAAGATAAAATTCACCGTCTTCGA-T-CTG-C-TC-T
456 TTAAATCTGCTTCACTGCAA-TTTCAGGAAGACAAAATTCACCGTCTTCGATTCCTGACTTCGT
* *
97661051 AAGATCTACAATCTTTATCCTACTCCACTACAACTTTAGAGAGATAGGATGGCGGCTTAAATCTG
1 AAGATCTACAATCTTTAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
* * **
97661116 CTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCCTCAATCTGCTCCACTGCAACTTCAGAAA
66 CTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
*
97661181 GACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAAT
131 GACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAT
** *
97661246 CTGCTTCACTGCAACTTCAGGAAGACAAAATTTGCCGTCTTCGATCTGCCCCACTGTAACTTTAG
196 CTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGTAACTTTAG
*
97661311 GGAGACAAGATCTTCAATCTTCAGCCTACTCCACTACAACTTCAAGGAGATAGGATGGTGGCTTA
261 GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTCAAGGAGATAGGATGGTGGCTTA
* * *
97661376 AATCTGCTTTACTGCAACTTCAGGATGAGAAGATTTGCCGTCTTCGATCTGCTCAACTGCAACTT
326 AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCAACTGCAACTT
* * *
97661441 CAGGGAGATAAGATCTACAATCTTCAGCGTACTCCACTACAACTTTAGGTAGACAGGATGGT-GA
391 CAGGGAAACAAGATCTACAATCTTCAGCGTACTCCACTACAACTTTAGGGAGACAGGATGGTAG-
* * **
97661505 CTTAAATCTGCTTCACTGCAATTTCAGGTAGACAAGATTCGTCGTCTTCGATTTGCTCCACTGCA
455 CTTAAATCTGCTTCACTGCAATTTCAGGAAGACAAAATTCACCGTCTTCGA--T--T-C-CTG--
97661570 ACTTCAGGGAGAT
512 ACTTC-----G-T
* * *
97661583 AAGATCTACAAT-TTTCAGCCTACTCCAGTACAACTTTAGGGAGATAGGATGGTGGCTTGAATCT
1 AAGATCTACAATCTTT-AGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCT
* * * * * *
97661647 GCTTCACTGTAACTTCCGAAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGGG
65 GCTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCTTCGATCTGCTCCACTGCAACTTCAGGG
* *
97661712 AGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAAGATGGTAGCTTAAA
130 AGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAA
* *
97661777 TCTGCTTCACTGCAACTTCAGGAAGACAAGATTCACCGTCTTTGATCTGCTCCACTGTAACTTTA
195 TCTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGTAACTTTA
97661842 GGGAGA
260 GGGAGA
97661848 AGATCTGTAG
Statistics
Matches: 701, Mismatches: 74, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
512 4 0.01
513 448 0.64
518 1 0.00
521 3 0.00
524 1 0.00
525 2 0.00
531 3 0.00
532 239 0.34
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (518 bp):
AAGATCTACAATCTTTAGCCTACTCCACTACAACTTTAGAGAGATAGGATGGTGGCTTAAATCTG
CTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCTTCGATCTGCTCCACTGCAACTTCAGGGA
GACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAAT
CTGCTTCACTGCAACTTCAGGAAGACAAAATTCACCGTCTTCGATCTGCTCCACTGTAACTTTAG
GGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTCAAGGAGATAGGATGGTGGCTTA
AATCTGCTTCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATCTGCTCAACTGCAACTT
CAGGGAAACAAGATCTACAATCTTCAGCGTACTCCACTACAACTTTAGGGAGACAGGATGGTAGC
TTAAATCTGCTTCACTGCAATTTCAGGAAGACAAAATTCACCGTCTTCGATTCCTGACTTCGT
Found at i:97661720 original size:45 final size:44
Alignment explanation
Indices: 97661111--97661847 Score: 249
Period size: 45 Copynumber: 16.6 Consensus size: 44
97661101 GGCGGCTTAA
* * * * * *
97661111 ATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCTGTCCTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCGCAGTCTTCG
** * * *
97661156 ATCTGCTCCACTGCAACTTCAGAAAGACAAGATCTACAATCTTC-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATC-GCAGTCTTCG
* * * * * * ** * **
97661200 AGCCTACTCCACTACAACTTTAGAGAGATAGGAT-GGTGGCTTAA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCGCAGTCTTCG
* * * * * *
97661244 ATCTGCTTCACTGCAACTTCAGGAAGACAAAATTTGCCGTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCGCAGTCTTCG
* * * * * *
97661289 ATCTGCCCCACTGTAACTTTAGGGAGACAAGATCTTCAATCTTC-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATC-GCAGTCTTCG
* * * * * ** * **
97661333 AGCCTACTCCACTACAACTTCAAGGAGATAGGAT-GGTGGCTTAA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCGCAGTCTTCG
** * * *
97661377 ATCTGCTTTACTGCAACTTCA-GGATGAGAAGATTTGCCGTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGA-GATAAGA-TCGCAGTCTTCG
* * *
97661422 ATCTGCTCAACTGCAACTTCAGGGAGATAAGATCTACAATCTTC-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATC-GCAGTCTTCG
* * * * * * * ** * **
97661466 AGCGTACTCCACTACAACTTTAGGTAGACAGGAT-GGTGACTTAA
1 ATC-TGCTCCACTGCAACTTCAGGGAGATAAGATCGCAGTCTTCG
* * * *
97661510 ATCTGCTTCACTGCAATTTCAGGTAGACAAGATTCGTC-GTCTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCG-CAGTCTTCG
* * * *
97661555 ATTTGCTCCACTGCAACTTCAGGGAGATAAGATCTACAATTTTC-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATC-GCAGTCTTCG
* * * * * * ** *
97661599 AGCCTACTCCAGTACAACTTTAGGGAGATAGGAT-GGTGGCTT-G
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCGCAGTCTTCG
* * * ** *
97661642 AATCTGCTTCACTGTAACTTCCGAAAGATAAGATTCGCCGTCTTCG
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCGCAGTCTTCG
* * * *
97661688 ATTTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTC-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATC-GCAGTCTTCG
* * * * * * **
97661732 AGCCTACTCCACTACAACTTTAGGGAGATAAGATGGTAG-CTTAA
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCGCAGTCTTCG
* * * * * *
97661776 ATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCACCGTCTTTG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCGCAGTCTTCG
* *
97661821 ATCTGCTCCACTGTAACTTTAGGGAGA
1 ATCTGCTCCACTGCAACTTCAGGGAGA
97661848 AGATCTGTAG
Statistics
Matches: 485, Mismatches: 176, Indels: 62
0.67 0.24 0.09
Matches are distributed among these distances:
42 3 0.01
43 122 0.25
44 28 0.06
45 328 0.68
46 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCGCAGTCTTCG
Found at i:97667533 original size:128 final size:126
Alignment explanation
Indices: 97667246--97667551 Score: 343
Period size: 128 Copynumber: 2.4 Consensus size: 126
97667236 AATCCAACGA
* *
97667246 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCAGATTTTCAAACATTGAACATTGCCTTGC
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCA-ATTTCCAAACATCGAACATTGCCTTGC
* * * *
97667311 TTTAAAATTTAGAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGG
65 TTTAAAATTTACAAAACAGGAGCGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAG
* * * *
97667373 GAAATTGCAACCCAGCACGATAGGGCACGATTCCCCTAATTTCCAAACATCGAACATTGCCTT-C
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTC-AATTTCCAAACATCGAACATTGCCTTGC
* * * *
97667437 ATTTTAAGGAATTTTCAAAGTAC-GGA-CGAAATT-TCAAGGAATATTTGATTA-TTTGGACAAA
65 --TTTAA--AATTTACAAA--ACAGGAGCGAAATTCTAAAGGAATATTCGATTATTTTGAACAAA
97667498 CAG
124 CAG
* * *
97667501 AAAATCGAAACCCAGCACGGTTGGGCACGATTCCTCAAGTTCCCAAACATC
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCAA-TTTCCAAACATC
97667552 AACTATTATC
Statistics
Matches: 150, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
126 1 0.01
127 57 0.38
128 58 0.39
129 16 0.11
130 14 0.09
131 2 0.01
132 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (126 bp):
AAAATCGAAACCCAGCACGATAGGGCACGATTCCTCAATTTCCAAACATCGAACATTGCCTTGCT
TTAAAATTTACAAAACAGGAGCGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACAG
Found at i:97668988 original size:14 final size:14
Alignment explanation
Indices: 97668969--97669003 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
97668959 AATTTTTTTT
97668969 AAAAATAATACATA
1 AAAAATAATACATA
*
97668983 AAAAATAATATATA
1 AAAAATAATACATA
97668997 AAAAATA
1 AAAAATA
97669004 GTTTTAACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAATAATACATA
Found at i:97670645 original size:16 final size:16
Alignment explanation
Indices: 97670626--97670658 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97670616 AAAAATATCT
97670626 TAAAATAA-AATAATAG
1 TAAAATAATAA-AATAG
97670642 TAAAATAATAAAATAG
1 TAAAATAATAAAATAG
97670658 T
1 T
97670659 TTAACTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (16 bp):
TAAAATAATAAAATAG
Found at i:97672474 original size:16 final size:16
Alignment explanation
Indices: 97672453--97672486 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
97672443 TAAATAGACA
97672453 TAGTCTATTCCTCTTG
1 TAGTCTATTCCTCTTG
97672469 TAGTCTATTCCTCTTG
1 TAGTCTATTCCTCTTG
97672485 TA
1 TA
97672487 TTGATTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.50
Consensus pattern (16 bp):
TAGTCTATTCCTCTTG
Found at i:97672585 original size:5 final size:5
Alignment explanation
Indices: 97672575--97672606 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
97672565 TTGTGTGTTC
97672575 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
97672607 TCACAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:97672594 original size:14 final size:14
Alignment explanation
Indices: 97672575--97672605 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
97672565 TTGTGTGTTC
97672575 TTTATTTTATTTTA
1 TTTATTTTATTTTA
97672589 TTTATTTTATTTTA
1 TTTATTTTATTTTA
97672603 TTT
1 TTT
97672606 TTCACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:97677033 original size:5 final size:5
Alignment explanation
Indices: 97677023--97677054 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
97677013 TTGTGTGTTC
97677023 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
97677055 TCACACTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:97677042 original size:14 final size:14
Alignment explanation
Indices: 97677023--97677053 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
97677013 TTGTGTGTTC
97677023 TTTATTTTATTTTA
1 TTTATTTTATTTTA
97677037 TTTATTTTATTTTA
1 TTTATTTTATTTTA
97677051 TTT
1 TTT
97677054 TTCACACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:97681228 original size:29 final size:31
Alignment explanation
Indices: 97681168--97681230 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
97681158 ATGTCACATT
*
97681168 TGGCACCTATACTTTCATAAAATATCCAATG
1 TGGCACATATACTTTCATAAAATATCCAATG
* * *
97681199 TGGCACATGTACTTT-A-AAAATGTCTAATG
1 TGGCACATATACTTTCATAAAATATCCAATG
97681228 TGG
1 TGG
97681231 TGCTTAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 14 0.50
30 1 0.04
31 13 0.46
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (31 bp):
TGGCACATATACTTTCATAAAATATCCAATG
Found at i:97691361 original size:17 final size:17
Alignment explanation
Indices: 97691341--97691377 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
97691331 AAATAGATTT
97691341 TTAATTAAAAAATTTAA
1 TTAATTAAAAAATTTAA
*
97691358 TTAATTAAAAATTTTAA
1 TTAATTAAAAAATTTAA
97691375 TTA
1 TTA
97691378 TTCTTTCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TTAATTAAAAAATTTAA
Found at i:97692734 original size:19 final size:19
Alignment explanation
Indices: 97692710--97692747 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
97692700 TCCTAATTTT
97692710 TATATTT-TATATTATTAAA
1 TATATTTATATATT-TTAAA
97692729 TATATTTATATATTTTAAA
1 TATATTTATATATTTTAAA
97692748 AATCTAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTTATATATTTTAAA
Found at i:97696419 original size:26 final size:27
Alignment explanation
Indices: 97696364--97696418 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
97696354 TAACAATTTG
** *
97696364 AAATAAATTAATATGTAAAATAAATTA
1 AAATAAATTAATACATAAAATAAATAA
97696391 AAATAAA-TAATACATAAAAT-AATAA
1 AAATAAATTAATACATAAAATAAATAA
97696416 AAA
1 AAA
97696419 AGAACCCTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 7 0.28
26 11 0.44
27 7 0.28
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (27 bp):
AAATAAATTAATACATAAAATAAATAA
Found at i:97696766 original size:51 final size:49
Alignment explanation
Indices: 97696553--97696780 Score: 120
Period size: 51 Copynumber: 4.4 Consensus size: 49
97696543 TAACATATAC
* ** * *
97696553 ATATATAAAAGTTTAAAATAAGGAGTATATAAAAATATTTTAAAATAAGTGAT
1 ATATATAATAGTTTAAAATAAAAAG-ATA-AAAAA-A-TTTAAAATAACTAAT
** * * * * *
97696606 ATATGGAA-AGTTCAAAATAAATAACAATAAAAGAAATTTAAAACAATTAAC
1 ATATATAATAGTTTAAAATAAA-AA-GATAAAA-AAATTTAAAATAACTAAT
* * * * * *
97696657 CTATA-AACTAGTAT-AACTAAATAACATATAAGAAATTTTAAAATACCTATTAT
1 ATATATAA-TAGTTTAAAATAAA-AAGATA-AA-AAAATTTAAAATAACTA--AT
* * *
97696710 ATATAAAATATTTTAAAATAAAAAGATAAAAAAATTTAAAATAAGTAAT
1 ATATATAATAGTTTAAAATAAAAAGATAAAAAAATTTAAAATAACTAAT
*
97696759 ATGTATAATAGTTTAAAATAAA
1 ATATATAATAGTTTAAAATAAA
97696781 TAATATATGT
Statistics
Matches: 132, Mismatches: 32, Indels: 26
0.69 0.17 0.14
Matches are distributed among these distances:
49 21 0.16
50 5 0.04
51 51 0.39
52 21 0.16
53 26 0.20
54 8 0.06
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (49 bp):
ATATATAATAGTTTAAAATAAAAAGATAAAAAAATTTAAAATAACTAAT
Found at i:97696856 original size:24 final size:26
Alignment explanation
Indices: 97696824--97696897 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
97696814 TTTAAAATAG
* *
97696824 AAAAGGA-TTAGAATAAGTAATA-AT
1 AAAAGGATTTAAAATAAATAATATAT
*
97696848 AAAATGATTTAAAATAAATAATATAT
1 AAAAGGATTTAAAATAAATAATATAT
** * *
97696874 AAAAAAACTTAAAATGAATAATAT
1 AAAAGGATTTAAAATAAATAATAT
97696898 TAGCAGTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
24 6 0.15
25 13 0.32
26 22 0.54
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.28
Consensus pattern (26 bp):
AAAAGGATTTAAAATAAATAATATAT
Found at i:97700458 original size:3 final size:3
Alignment explanation
Indices: 97700450--97700516 Score: 57
Period size: 3 Copynumber: 22.0 Consensus size: 3
97700440 TATATTGTTC
* * * *
97700450 TTA TTA TTA CTA TTA CTA TTC CTA TTA TTA TT- TTA TCTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
97700495 TTA TTA TTTA TATA TT- TTA TTA
1 TTA TTA -TTA T-TA TTA TTA TTA
97700517 CAAATTGTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
2 4 0.08
3 38 0.75
4 9 0.18
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:97701459 original size:20 final size:19
Alignment explanation
Indices: 97701426--97701463 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
97701416 GTAAACCGAA
97701426 AAACATTGTTTTAATAAATT
1 AAACATTGTTTTAA-AAATT
97701446 AAACATT-TTATTAAAAAT
1 AAACATTGTT-TTAAAAAT
97701464 ATCAAGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (19 bp):
AAACATTGTTTTAAAAATT
Found at i:97702174 original size:6 final size:7
Alignment explanation
Indices: 97702157--97702186 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
97702147 GATAGAAATT
97702157 AAAAAAG
1 AAAAAAG
97702164 AAAAAAG
1 AAAAAAG
97702171 AAAAAAG
1 AAAAAAG
97702178 -AAAAAG
1 AAAAAAG
97702184 AAA
1 AAA
97702187 GACTAAGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:97702176 original size:14 final size:13
Alignment explanation
Indices: 97702157--97702186 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
97702147 GATAGAAATT
97702157 AAAAAAGAAAAAAG
1 AAAAAAG-AAAAAG
97702171 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
97702184 AAA
1 AAA
97702187 GACTAAGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:97705894 original size:3 final size:3
Alignment explanation
Indices: 97705883--97705955 Score: 103
Period size: 3 Copynumber: 24.3 Consensus size: 3
97705873 CAATAATACC
* * *
97705883 AAT ACT AAT AAT AGT AA- AAT GAT AAT AAT AAT AAT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
97705928 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
97705956 GCAAAAGTAC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
2 2 0.03
3 57 0.92
4 3 0.05
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97706450 original size:12 final size:12
Alignment explanation
Indices: 97706433--97706460 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97706423 AGCTTCAGTC
97706433 GCCGTCCGTCGT
1 GCCGTCCGTCGT
97706445 GCCGTCCGTCGT
1 GCCGTCCGTCGT
97706457 GCCG
1 GCCG
97706461 GCGTTGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.36, T:0.21
Consensus pattern (12 bp):
GCCGTCCGTCGT
Found at i:97707315 original size:40 final size:39
Alignment explanation
Indices: 97707256--97707377 Score: 113
Period size: 40 Copynumber: 3.1 Consensus size: 39
97707246 GTTTCTTTTG
* * *
97707256 TCTGCTCCGCTATTGCTTAGAGAGATGAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAG-GAGATAAGACTTGATGTGA
* ** *
97707296 TCTGCTCCACTACTACTTAGG-GATAAGATCGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGAGATAAGA-C-TTGATGT-GA
*
97707336 TCTGCTTCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTA-GGAGATAAGACTTGATGTGA
97707376 TC
1 TC
97707378 CACTCTGCTG
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
38 6 0.09
39 3 0.05
40 44 0.69
41 4 0.06
42 7 0.11
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (39 bp):
TCTGCTCCACTACTGCTTAGGAGATAAGACTTGATGTGA
Found at i:97707446 original size:44 final size:43
Alignment explanation
Indices: 97707385--97707750 Score: 189
Period size: 44 Copynumber: 8.5 Consensus size: 43
97707375 ATCCACTCTG
* * *
97707385 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAAT-TCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTT-CTTCAATCT-GCTCCA
* * ** * *
97707429 CTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
* **
97707472 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATC-CTTTCTTCAATCTGCTCCA
* *** **
97707516 CTGTAACCTCAGGGAGATAAGATCCGAAATTCTTTGGTCTATTCCA
1 CTGTAACCTCAGGGAGATAAGATCC---TTTCTTCAATCTGCTCCA
* * * * * *
97707562 CTGTAATCTCAGGGAGATAAGA-CCTGAT-GT-GATCTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCCT-TTCTTCAATCTGCTCCA
* *
97707603 CTGTAACTTCA-GGAGATAAGATCC--T-TT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
* * * * ** *
97707641 -TGTAA-CTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGA-TCCTTTCTTCAATCTGCTCCA
* *** *
97707683 CTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTTGGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCCT----TTCTTCAATCTGCTCCA
*
97707729 CTGTAATCTCAGGGAGATAAGA
1 CTGTAACCTCAGGGAGATAAGA
97707751 CCTGTATAAT
Statistics
Matches: 251, Mismatches: 52, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
36 3 0.01
37 14 0.06
38 11 0.04
40 11 0.04
41 20 0.08
42 11 0.04
43 38 0.15
44 75 0.30
45 2 0.01
46 66 0.26
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (43 bp):
CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
Found at i:97707582 original size:90 final size:87
Alignment explanation
Indices: 97707468--97707750 Score: 268
Period size: 90 Copynumber: 3.3 Consensus size: 87
97707458 TTCGATCTGC
*
97707468 TCCACTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAAGATCTCT-GCTT-GATCTGCTCCACTGTAACCTCAGGGAGA
97707533 TAAGATCCGAAATTCTTTGGTCTAT
64 TAAGATCCGAAATTCTTTGGTCT-T
* * * *
97707558 TCCACTGTAATCTCAGGGAGATAAGA-C-CTGATGTGATCTTCTCTACTGTAACTTCA-GGAGAT
1 TCCACTGTAATCTCAGGGAGATAAGATCTCTGCT-TGATCTGCTCCACTGTAACCTCAGGGAGAT
** *
97707620 AAGATCCTTTAA-TC---CG-C--
65 AAGATCC-GAAATTCTTTGGTCTT
* * * * *
97707637 TCCA-TGTAA-CTCAAGGAGATAGGAT-TACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAG
1 TCCACTGTAATCTCAGGGAGATAAGATCT-CT-GC-TTGATCTGCTCCACTGTAACCTCAGGGAG
*
97707699 ATAAGATCTGAAATTCTTTGGTCTGT
63 ATAAGATCCGAAATTCTTTGGTCT-T
97707725 TCCACTGTAATCTCAGGGAGATAAGA
1 TCCACTGTAATCTCAGGGAGATAAGA
97707751 CCTGTATAAT
Statistics
Matches: 152, Mismatches: 23, Indels: 36
0.72 0.11 0.17
Matches are distributed among these distances:
77 13 0.09
78 5 0.03
79 6 0.04
80 20 0.13
81 15 0.10
82 1 0.01
83 1 0.01
84 1 0.01
85 1 0.01
86 15 0.10
87 22 0.14
88 7 0.05
89 6 0.04
90 39 0.26
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (87 bp):
TCCACTGTAATCTCAGGGAGATAAGATCTCTGCTTGATCTGCTCCACTGTAACCTCAGGGAGATA
AGATCCGAAATTCTTTGGTCTT
Found at i:97720289 original size:16 final size:15
Alignment explanation
Indices: 97720259--97720299 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
97720249 TATACAAAAA
97720259 ATATAAAATACATAC
1 ATATAAAATACATAC
*
97720274 ATATAAATATATATAC
1 ATATAAA-ATACATAC
*
97720290 TTATAAAATA
1 ATATAAAATA
97720300 AAAATATGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATAAAATACATAC
Found at i:97720499 original size:3 final size:3
Alignment explanation
Indices: 97720488--97720555 Score: 86
Period size: 3 Copynumber: 23.3 Consensus size: 3
97720478 CAATAATACC
* * *
97720488 AAT ACT AAT AAT AGT AA- AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
97720535 AAT AAC AA- AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
97720556 GCAAAAGTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 4 0.07
3 52 0.93
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:97721048 original size:12 final size:12
Alignment explanation
Indices: 97721031--97721058 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
97721021 AGCTTCAGTC
97721031 GCCGTCCGTCGT
1 GCCGTCCGTCGT
97721043 GCCGTCCGTCGT
1 GCCGTCCGTCGT
97721055 GCCG
1 GCCG
97721059 GCGTTGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.36, T:0.21
Consensus pattern (12 bp):
GCCGTCCGTCGT
Found at i:97722164 original size:23 final size:21
Alignment explanation
Indices: 97722130--97722173 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
97722120 ATATAATAAA
*
97722130 TATATTTTTTTTATTTTTAAT
1 TATATTTTTTTTAATTTTAAT
97722151 TATATTTATATTTTAATTTTAAT
1 TATATTT-T-TTTTAATTTTAAT
97722174 ATAATCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 1 0.05
23 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TATATTTTTTTTAATTTTAAT
Found at i:97722234 original size:40 final size:40
Alignment explanation
Indices: 97722190--97722270 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
97722180 AATTTTTATT
97722190 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
1 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
** * * * *
97722230 ATATATTTTTTATTTGTTTCTTGTTTTAATATTTGTTTTA
1 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
97722270 A
1 A
97722271 ATGTATTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (40 bp):
ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
Found at i:97723778 original size:131 final size:131
Alignment explanation
Indices: 97723488--97723960 Score: 484
Period size: 131 Copynumber: 3.6 Consensus size: 131
97723478 GTGAAAAAGC
* * * *
97723488 GCAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATCGAACGTCGCCTTTGTTTTAAA
1 GCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAA
* * ** * *
97723553 GGGTTTCCTTAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAA-CAAACGAGA
66 GGATTT--TTAAAAGACATGAGTGAAATTCTAAAGGGATATTCGATTATTTT-AAGCAAACGAGA
*
97723617 AGTC
128 AGTT
* * * ** * *
97723621 ACAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAATATCGAGTATTGCCTTTGTTTTAAA
1 GCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAA
* * * * *
97723686 GGATTTTTAGAAGACATGAGTGAGATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAAGT
66 GGATTTTTAAAAGACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTAAGCAAACGAGAAGT
97723751 T
131 T
* * *
97723752 GCAACCCAGCACGTTAGGGCACGATTCTGCGAATTGCC-AATAATCGCACATCGCCTTCG-TTTA
1 GCAACCCAGCACGATAGGGCACGATTC-CCGAATTGCCAAAT-ATCGAACATCGCCTTCGTTTTA
* * ** * *
97723815 AGGGATTTTTAAAAGACATGGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCAAACGAGAA
64 AAGGATTTTTAAAAGACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTAAGCAAACGAGAA
*
97723880 ATT
129 GTT
* * * * * * ** *
97723883 GCAACCCAACACGTTAGGGTACTATTCCTCGACTTACCATGTATCGAATATCGCCTTCGTTTTAA
1 GCAACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAATATCGAACATCGCCTTCGTTTTAA
*
97723948 AGGATTCTTAAAA
65 AGGATTTTTAAAA
97723961 ATTGTGAAAC
Statistics
Matches: 279, Mismatches: 55, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
130 2 0.01
131 179 0.64
132 37 0.13
133 61 0.22
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (131 bp):
GCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAA
GGATTTTTAAAAGACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTAAGCAAACGAGAAGT
T
Found at i:97724882 original size:15 final size:16
Alignment explanation
Indices: 97724862--97724894 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
97724852 ATATATATTT
97724862 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
97724877 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
97724894 T
1 T
97724895 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:97724967 original size:21 final size:22
Alignment explanation
Indices: 97724941--97724999 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
97724931 GTTTTAAGAA
*
97724941 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
97724962 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
97724984 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
97725000 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:97725014 original size:26 final size:24
Alignment explanation
Indices: 97724970--97725019 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
97724960 ATTTGTTTTA
*
97724970 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
97724994 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
97725020 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:97725976 original size:19 final size:19
Alignment explanation
Indices: 97725952--97725990 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
97725942 GGCTATGAAC
97725952 TAAGAGGATTTAATTAGAA
1 TAAGAGGATTTAATTAGAA
97725971 TAAGAGGATTTAATTAGAA
1 TAAGAGGATTTAATTAGAA
97725990 T
1 T
97725991 CAATCCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.33
Consensus pattern (19 bp):
TAAGAGGATTTAATTAGAA
Found at i:97726834 original size:14 final size:14
Alignment explanation
Indices: 97726815--97726844 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
97726805 CCCCTGGCTT
*
97726815 TATATCCGTTTGAA
1 TATATCCATTTGAA
97726829 TATATCCATTTGAA
1 TATATCCATTTGAA
97726843 TA
1 TA
97726845 ATACAATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (14 bp):
TATATCCATTTGAA
Found at i:97730765 original size:22 final size:22
Alignment explanation
Indices: 97730740--97730784 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
97730730 CTTTCTTATT
*
97730740 ATTACTAAAAGTAGCACTTAAG
1 ATTACTAAAAGTAACACTTAAG
97730762 ATTACTAAAAGTAACACTTAAG
1 ATTACTAAAAGTAACACTTAAG
97730784 A
1 A
97730785 GTTTCGGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (22 bp):
ATTACTAAAAGTAACACTTAAG
Found at i:97731415 original size:53 final size:53
Alignment explanation
Indices: 97731330--97731431 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
97731320 GCTTGTCAGA
*
97731330 GGCTTCATGACTTAAGCCCAAGATGTCGGCAGTTAACTTTTCTTTGATGCAGT
1 GGCTACATGACTTAAGCCCAAGATGTCGGCAGTTAACTTTTCTTTGATGCAGT
*
97731383 GGCTACATGACTTAAGCCTAAGATG-CGGGCAGTTAACTTTTCTTTGATG
1 GGCTACATGACTTAAGCCCAAGATGTC-GGCAGTTAACTTTTCTTTGATG
97731432 AAATGTCGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 1 0.02
53 45 0.98
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (53 bp):
GGCTACATGACTTAAGCCCAAGATGTCGGCAGTTAACTTTTCTTTGATGCAGT
Found at i:97737669 original size:19 final size:19
Alignment explanation
Indices: 97737603--97737661 Score: 111
Period size: 19 Copynumber: 3.2 Consensus size: 19
97737593 GTATATATTT
97737603 TAAAT-TTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
97737621 TAAATCTTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
97737640 TAAATCTTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
97737659 TAA
1 TAA
97737662 GTTTTATTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
18 5 0.12
19 35 0.88
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (19 bp):
TAAATCTTATTTAGGTAGA
Found at i:97737749 original size:42 final size:42
Alignment explanation
Indices: 97737686--97737774 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
97737676 CTAAGAATAT
* *
97737686 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATATTTGAGTAGTTTATTAGAATAAGGGAACTA
*
97737728 TTTTCTTTTATATTTGAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATATTTGAGTAGTTTATTAGAATAAGGGAACTA
97737770 TTTTA
1 TTTTA
97737775 CCAATTAGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (42 bp):
TTTTATTTTATATTTGAGTAGTTTATTAGAATAAGGGAACTA
Found at i:97741584 original size:19 final size:19
Alignment explanation
Indices: 97741556--97741603 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
97741546 GTATATATTT
97741556 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
97741574 TAAATTTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
97741593 TAAGTTTTATT
1 TAAATTTTATT
97741604 CATATTCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:97741679 original size:42 final size:42
Alignment explanation
Indices: 97741620--97741708 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
97741610 CTAAGAATAT
* *
97741620 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGAAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGAAACTA
*
97741662 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGAAACTA
97741704 TTTTC
1 TTTTC
97741709 CCAATTAGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGAAACTA
Found at i:97748538 original size:14 final size:14
Alignment explanation
Indices: 97748515--97748557 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
97748505 GCAAATTAAG
97748515 AATCATAAATTTCAAA
1 AATCA-AAA-TTCAAA
*
97748531 AAT-AAAATTCTAA
1 AATCAAAATTCAAA
97748544 AATCAAAATTCAAA
1 AATCAAAATTCAAA
97748558 GTTAAGCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 8 0.33
14 12 0.50
15 1 0.04
16 3 0.12
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (14 bp):
AATCAAAATTCAAA
Found at i:97748545 original size:13 final size:13
Alignment explanation
Indices: 97748519--97748557 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
97748509 ATTAAGAATC
*
97748519 ATAAATTTCAAAA
1 ATAAAATTCAAAA
*
97748532 ATAAAATTCTAAA
1 ATAAAATTCAAAA
97748545 ATCAAAATTCAAA
1 AT-AAAATTCAAA
97748558 GTTAAGCAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
ATAAAATTCAAAA
Found at i:97762520 original size:3 final size:3
Alignment explanation
Indices: 97762508--97762636 Score: 73
Period size: 3 Copynumber: 42.3 Consensus size: 3
97762498 TTTATTTTGC
* * * *
97762508 TAT T-T TAT TAT TAA AAT TTAT TAAT TTAT TAT TAC TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT -TAT T-AT T-AT TAT TAT TAT TAT TAT TAT
* * * * * * *
97762555 TTT TAC TAT TAC TAT TAT TTT CTAC TAT TAC TAT TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
97762601 CAT TAT TAT TAT TAT T-T TTT TTT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
97762637 TCATTTTTTT
Statistics
Matches: 93, Mismatches: 28, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
2 4 0.04
3 80 0.86
4 9 0.10
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:97762554 original size:18 final size:18
Alignment explanation
Indices: 97762533--97762614 Score: 101
Period size: 18 Copynumber: 4.5 Consensus size: 18
97762523 ATTTATTAAT
* *
97762533 TTATTATTACTATTATTG
1 TTATTATTACTATTACTA
*
97762551 TTATTTTTACTATTACTA
1 TTATTATTACTATTACTA
*
97762569 TTATTTTCTACTATTACTA
1 TTATTAT-TACTATTACTA
* *
97762588 TTATTATTACTATCATTA
1 TTATTATTACTATTACTA
97762606 TTATTATTA
1 TTATTATTA
97762615 TTTTTTTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
18 40 0.70
19 17 0.30
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.60
Consensus pattern (18 bp):
TTATTATTACTATTACTA
Found at i:97762592 original size:37 final size:37
Alignment explanation
Indices: 97762540--97762610 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
97762530 AATTTATTAT
* * * *
97762540 TACTATTATTGTTATTTTTACTATTACTATTATTTTC
1 TACTATTACTATTATTATTACTATCACTATTATTTTC
*
97762577 TACTATTACTATTATTATTACTATCATTATTATT
1 TACTATTACTATTATTATTACTATCACTATTATT
97762611 ATTATTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.28, C:0.11, G:0.01, T:0.59
Consensus pattern (37 bp):
TACTATTACTATTATTATTACTATCACTATTATTTTC
Found at i:97762634 original size:23 final size:24
Alignment explanation
Indices: 97762602--97762655 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
97762592 TATTACTATC
* *
97762602 ATTATTATTATTATTTTTTTTTTACT
1 ATTATTATT-TCATTTTTTTTATA-T
97762628 ATTATTATTTCATTTTTTTTATAT
1 ATTATTATTTCATTTTTTTTATAT
97762652 ATTA
1 ATTA
97762656 AAATTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 5 0.19
25 12 0.46
26 9 0.35
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (24 bp):
ATTATTATTTCATTTTTTTTATAT
Found at i:97762661 original size:24 final size:25
Alignment explanation
Indices: 97762614--97762661 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
97762604 TATTATTATT
* **
97762614 ATTTTTTTTTTACTATTATTATTTC
1 ATTTTTTTTATACTATTAAAATTTC
97762639 ATTTTTTTTATA-TATTAAAATTT
1 ATTTTTTTTATACTATTAAAATTT
97762662 TATTGGCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (25 bp):
ATTTTTTTTATACTATTAAAATTTC
Found at i:97767804 original size:10 final size:10
Alignment explanation
Indices: 97767789--97767827 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
97767779 GCAGATGTAG
97767789 CAAAAAAAAA
1 CAAAAAAAAA
97767799 CAAAAAAAAA
1 CAAAAAAAAA
* *
97767809 -TATAAAAAA
1 CAAAAAAAAA
97767818 CAAAAAAAAA
1 CAAAAAAAAA
97767828 ATTATGGGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.05
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:97769087 original size:46 final size:46
Alignment explanation
Indices: 97768957--97769100 Score: 189
Period size: 46 Copynumber: 3.1 Consensus size: 46
97768947 ACCCAGATCA
* * *
97768957 ATGGATTGAAGAAGATACAAATCCTGTACCCCTGAGTTACAGTGGG
1 ATGGATTGAAGATGATACAAATCCTATACCCCTGAGTTGCAGTGGG
* * *
97769003 ATGAATTGAAGATGATACAAATCCCATATCCCTGAGTTGCAGTGGG
1 ATGGATTGAAGATGATACAAATCCTATACCCCTGAGTTGCAGTGGG
* * * *
97769049 ATGGATTGAAGGTGATACAAATCCTATAGCCTTGAGTTGTAGTGGG
1 ATGGATTGAAGATGATACAAATCCTATACCCCTGAGTTGCAGTGGG
*
97769095 GTGGAT
1 ATGGAT
97769101 GAAAGAAACC
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (46 bp):
ATGGATTGAAGATGATACAAATCCTATACCCCTGAGTTGCAGTGGG
Found at i:97769969 original size:44 final size:44
Alignment explanation
Indices: 97769890--97770163 Score: 162
Period size: 44 Copynumber: 6.2 Consensus size: 44
97769880 AAGTTCTAGC
* * * * *
97769890 GGAGTAGATCGAAGCTACAAAT-CTCT-TCTCCCTGAAATTACATT
1 GGAGCAGATCGAAGCCAC-AATCCT-TATCTCTCTGAAGTTACAGT
* *
97769934 GGAGTAGATAGAAGCCACAATCCTTATCTCTCTGAAGTTACAGT
1 GGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGT
* ** ** * *
97769978 AGAGCAGGATAAAAATACACAAACCTTATCTC-CTTGAAGTTGCAGT
1 GGAGCA-GAT-CGAAGCCACAATCCTTATCTCTC-TGAAGTTACAGT
* * *** * * * * *
97770024 GGAGCAGGTTGAAATTACCAATTCTTACCTCTTTGAAGTTCCAGC
1 GGAGCAGATCGAAGCCA-CAATCCTTATCTCTCTGAAGTTACAGT
* * * * *
97770069 GGAGTAGATCGAAGCTAC-ATACCTCT-TCTCCCTGAAATTACATT
1 GGAGCAGATCGAAGCCACAAT-CCT-TATCTCTCTGAAGTTACAGT
*
97770113 GGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTGCAGT
1 GGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGT
*
97770157 AGAGCAG
1 GGAGCAG
97770164 GATAAAAATA
Statistics
Matches: 174, Mismatches: 45, Indels: 22
0.72 0.19 0.09
Matches are distributed among these distances:
43 7 0.04
44 93 0.53
45 41 0.24
46 33 0.19
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (44 bp):
GGAGCAGATCGAAGCCACAATCCTTATCTCTCTGAAGTTACAGT
Found at i:97770037 original size:179 final size:178
Alignment explanation
Indices: 97769818--97770292 Score: 724
Period size: 179 Copynumber: 2.7 Consensus size: 178
97769808 CTACAAGCCG
*
97769818 CAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAAGTTGAAATTACCAGTTCTTACCTCCTTGAAG
1 CAAACCTTATCTCCCTGAAGTTG-AGTGGAGCAAGTTGAAATTACCAATTCTTACCTCCTTGAAG
* *
97769883 TTCTAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTGGAGTAGATAGAAG
65 TTCTAGCGGAGTAGATCGAAGCTACAAAACTCTTCTCCCTGAAATTACATTGGAGCAGATAGAAG
97769948 CCACAATCCTTATCTCTCTGAAGTTACAGTAGAGCAGGATAAAAATACA
130 CCACAATCCTTATCTCTCTGAAGTTACAGTAGAGCAGGATAAAAATACA
* * *
97769997 CAAACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTACCTCTTTGAAG
1 CAAACCTTATCTCCCTGAAGTTG-AGTGGAGCAAGTTGAAATTACCAATTCTTACCTCCTTGAAG
* * * *
97770062 TTCCAGCGGAGTAGATCGAAGCTACATACCTCTTCTCCCTGAAATTACATTGGAGCAGATCGAAG
65 TTCTAGCGGAGTAGATCGAAGCTACAAAACTCTTCTCCCTGAAATTACATTGGAGCAGATAGAAG
*
97770127 CCACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACA
130 CCACAATCCTTATCTCTCTGAAGTTACAGTAGAGCAGGATAAAAATACA
* * * *
97770176 CAAACCTTATTTCCCT-CAG-T-AGTGGGGCAAGTTGAAATTACCAATTCTTATCTCCTTGAAGT
1 CAAACCTTATCTCCCTGAAGTTGAGTGGAGCAAGTTGAAATTACCAATTCTTACCTCCTTGAAGT
* * * *
97770238 T-TCAGCGGAGTAGGTCGAAGCTACAAAACTCTTTTCTCTAAAATTACATTGGAGC
66 TCT-AGCGGAGTAGATCGAAGCTACAAAACTCTTCTCCCTGAAATTACATTGGAGC
97770293 GTATCGAAGC
Statistics
Matches: 270, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
175 85 0.31
177 1 0.00
178 2 0.01
179 182 0.67
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (178 bp):
CAAACCTTATCTCCCTGAAGTTGAGTGGAGCAAGTTGAAATTACCAATTCTTACCTCCTTGAAGT
TCTAGCGGAGTAGATCGAAGCTACAAAACTCTTCTCCCTGAAATTACATTGGAGCAGATAGAAGC
CACAATCCTTATCTCTCTGAAGTTACAGTAGAGCAGGATAAAAATACA
Found at i:97771643 original size:3 final size:3
Alignment explanation
Indices: 97771624--97771830 Score: 165
Period size: 3 Copynumber: 69.7 Consensus size: 3
97771614 TAGCCTTTTT
* ** *
97771624 TTA TT- TTA CTA TT- TTA TTA TTA AAA TTAA TTA AT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
* * * * * *
97771667 CTA CTA TTA TTA TTA TTT TTA CTA TTA CTA TTA TTT TCTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * *
97771713 TTA TTA CTA TTG TTA TTA TT- GTA TTTA CTA TTA TTA TTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * *
97771758 TAA TTA TTA TTA TTA CTA TTA TTA TTA TTA TT- TCTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
97771803 TTA TTA TTA TTA TT- TTA CTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97771831 TCTTGTTTAT
Statistics
Matches: 160, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
2 9 0.06
3 143 0.89
4 8 0.05
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:97772070 original size:26 final size:26
Alignment explanation
Indices: 97772001--97772054 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
97771991 GTCACTCATA
*
97772001 TTGACATAGCAATTTATTTTTACATT
1 TTGACATAACAATTTATTTTTACATT
97772027 TTGACATAACAATTTATTTTTACATT
1 TTGACATAACAATTTATTTTTACATT
97772053 TT
1 TT
97772055 ACTACCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (26 bp):
TTGACATAACAATTTATTTTTACATT
Found at i:97774118 original size:19 final size:19
Alignment explanation
Indices: 97774089--97774149 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
97774079 CAAATGGGAG
97774089 AGAGAAACAATGCCTTAAGT
1 AGAG-AACAATGCCTTAAGT
**
97774109 AGAGAACAATAG---GGAG-
1 AGAGAACAAT-GCCTTAAGT
97774125 AGAGAACAATGCCTTAAGT
1 AGAGAACAATGCCTTAAGT
97774144 AGAGAA
1 AGAGAA
97774150 TGGCAAATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 11
0.68 0.09 0.23
Matches are distributed among these distances:
15 1 0.03
16 10 0.31
17 2 0.06
18 2 0.06
19 12 0.38
20 5 0.16
ACGTcount: A:0.48, C:0.11, G:0.26, T:0.15
Consensus pattern (19 bp):
AGAGAACAATGCCTTAAGT
Found at i:97776569 original size:97 final size:97
Alignment explanation
Indices: 97776403--97776596 Score: 388
Period size: 97 Copynumber: 2.0 Consensus size: 97
97776393 CCAAATACAT
97776403 GTAAATAATCATAATCAGTAGCAGATTTACCAGTCCACATCGCCATAGGAGTTTTTCCATTTATT
1 GTAAATAATCATAATCAGTAGCAGATTTACCAGTCCACATCGCCATAGGAGTTTTTCCATTTATT
97776468 GCAGCTGATGGCAAACGGTTAATTAGATGGCA
66 GCAGCTGATGGCAAACGGTTAATTAGATGGCA
97776500 GTAAATAATCATAATCAGTAGCAGATTTACCAGTCCACATCGCCATAGGAGTTTTTCCATTTATT
1 GTAAATAATCATAATCAGTAGCAGATTTACCAGTCCACATCGCCATAGGAGTTTTTCCATTTATT
97776565 GCAGCTGATGGCAAACGGTTAATTAGATGGCA
66 GCAGCTGATGGCAAACGGTTAATTAGATGGCA
97776597 CGCATATATA
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 97 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (97 bp):
GTAAATAATCATAATCAGTAGCAGATTTACCAGTCCACATCGCCATAGGAGTTTTTCCATTTATT
GCAGCTGATGGCAAACGGTTAATTAGATGGCA
Found at i:97778491 original size:18 final size:18
Alignment explanation
Indices: 97778470--97778508 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
97778460 GAACAGTATC
97778470 GTATACATGAATAGTGCT
1 GTATACATGAATAGTGCT
*
97778488 GTATACATGAATAGTGTT
1 GTATACATGAATAGTGCT
97778506 GTA
1 GTA
97778509 AATGGTCGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (18 bp):
GTATACATGAATAGTGCT
Found at i:97780598 original size:10 final size:10
Alignment explanation
Indices: 97780583--97780612 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
97780573 ATTAAATATT
97780583 TTATATTAAA
1 TTATATTAAA
97780593 TTATATTAAA
1 TTATATTAAA
97780603 TTATATTAAA
1 TTATATTAAA
97780613 ATATTTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTATATTAAA
Found at i:97780610 original size:15 final size:15
Alignment explanation
Indices: 97780535--97780610 Score: 59
Period size: 15 Copynumber: 5.3 Consensus size: 15
97780525 TTTTAATGTA
*
97780535 ATTATATTAAAATAT
1 ATTATATTAAATTAT
* *
97780550 TTTATTTTAAATTAT
1 ATTATATTAAATTAT
*
97780565 ATT-T-TGAAATTA-
1 ATTATATTAAATTAT
* * * *
97780577 AATATTTTATATTAA
1 ATTATATTAAATTAT
97780592 ATTATATTAAATTAT
1 ATTATATTAAATTAT
97780607 ATTA
1 ATTA
97780611 AAATATTTCA
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
12 2 0.04
13 8 0.17
14 7 0.15
15 29 0.63
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (15 bp):
ATTATATTAAATTAT
Found at i:97780777 original size:20 final size:20
Alignment explanation
Indices: 97780740--97780777 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97780730 ATAATTTCAT
*
97780740 TAAATAAATATTCAACCAAA
1 TAAATAAATAATCAACCAAA
*
97780760 TAAATAAATAATCTACCA
1 TAAATAAATAATCAACCA
97780778 TTCAATGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26
Consensus pattern (20 bp):
TAAATAAATAATCAACCAAA
Found at i:97781990 original size:34 final size:35
Alignment explanation
Indices: 97781932--97782000 Score: 131
Period size: 34 Copynumber: 2.0 Consensus size: 35
97781922 AATTTTAAAG
97781932 GGACCTTCGATTACTTTGAGCAAACGAGAAATTAC
1 GGACCTTCGATTACTTTGAGCAAACGAGAAATTAC
97781967 GGACCTTCGATTAC-TTGAGCAAACGAGAAATTAC
1 GGACCTTCGATTACTTTGAGCAAACGAGAAATTAC
97782001 AACCCAACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 20 0.59
35 14 0.41
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (35 bp):
GGACCTTCGATTACTTTGAGCAAACGAGAAATTAC
Found at i:97782350 original size:218 final size:224
Alignment explanation
Indices: 97781967--97782410 Score: 846
Period size: 218 Copynumber: 2.0 Consensus size: 224
97781957 GAGAAATTAC
97781967 GGACCTTCGATTACTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCACAAA
1 GGACCTTCGATTACTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCACAAA
97782032 TTACCAAATATCGAATATCGCCTTCGTTTTAAAGGATTCTTAATAGTTGTGAAACTAGTTTAAAA
66 TTACCAAATATCGAATATCGCCTTCGTTTTAAAGGATTCTTAATAGTTGTGAAACTAGTTTAAAA
97782097 CGCATTAATTTGATTTGAAATAAGACGAAATTAATCATAAAATTTGGATTTTATAAAACCACATT
131 CGCATTAATTTGATTTGAAATAAGACGAAATTAATCATAAAATTTGGATTTTATAAAACCACATT
97782162 TCG-AAATCAAATGGAAAGCGATGAATGG
196 TCGAAAATCAAATGGAAAGCGATGAATGG
97782190 GGACCTTCGATTACTTGAGCAAACGAGAAATTACAACCC-A-ACGTTAGGGCACGATTCCACAAA
1 GGACCTTCGATTACTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCACAAA
97782253 TTACCAAATATCGAATATCG-CTTCGTTTTAAA-GATTC-TAATAGTTGTGAAACTAGTTTAAAA
66 TTACCAAATATCGAATATCGCCTTCGTTTTAAAGGATTCTTAATAGTTGTGAAACTAGTTTAAAA
97782315 CGCATTAATTTGATTTGAAATAAGACGAAATTAATCATAAAATTTGGATTTTATAAAACCACATT
131 CGCATTAATTTGATTTGAAATAAGACGAAATTAATCATAAAATTTGGATTTTATAAAACCACATT
97782380 TCGAAAATCAAATGGAAAGCGATGAATGG
196 TCGAAAATCAAATGGAAAGCGATGAATGG
97782409 GG
1 GG
97782411 TAATATGTGT
Statistics
Matches: 220, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
218 93 0.42
219 32 0.15
220 12 0.05
221 43 0.20
222 1 0.00
223 39 0.18
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (224 bp):
GGACCTTCGATTACTTGAGCAAACGAGAAATTACAACCCAACACGTTAGGGCACGATTCCACAAA
TTACCAAATATCGAATATCGCCTTCGTTTTAAAGGATTCTTAATAGTTGTGAAACTAGTTTAAAA
CGCATTAATTTGATTTGAAATAAGACGAAATTAATCATAAAATTTGGATTTTATAAAACCACATT
TCGAAAATCAAATGGAAAGCGATGAATGG
Found at i:97784655 original size:17 final size:18
Alignment explanation
Indices: 97784633--97784666 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97784623 TTTTATCTGT
97784633 TTTGCTG-TGTGTTTGTA
1 TTTGCTGCTGTGTTTGTA
97784650 TTTGCTGCTGTGTTTGT
1 TTTGCTGCTGTGTTTGT
97784667 CCCTTTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.03, C:0.09, G:0.29, T:0.59
Consensus pattern (18 bp):
TTTGCTGCTGTGTTTGTA
Found at i:97784714 original size:20 final size:21
Alignment explanation
Indices: 97784675--97784721 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
97784665 GTCCCTTTTG
*
97784675 CAGGTACGAGACGTGCTGGCGTT
1 CAGGTACGAGAC--GCTGGCGTA
97784698 CAGGTACGAGA-GCTGGCGTA
1 CAGGTACGAGACGCTGGCGTA
97784718 CAGG
1 CAGG
97784722 CGTGCGAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 12 0.52
23 11 0.48
ACGTcount: A:0.21, C:0.21, G:0.40, T:0.17
Consensus pattern (21 bp):
CAGGTACGAGACGCTGGCGTA
Found at i:97788986 original size:67 final size:67
Alignment explanation
Indices: 97788878--97789013 Score: 245
Period size: 67 Copynumber: 2.0 Consensus size: 67
97788868 GAGGAGAAAC
*
97788878 ACTTGAATAAACATAATAAAAATTTAAAATTTTTTCGAGTTGCAGTACAACTTTAACTTAATTAT
1 ACTTGAATAAACATAATAAAAATTTAAAATTTTTTCGAGTTGCAGTACAACTTTAACTCAATTAT
97788943 AA
66 AA
* *
97788945 ACTTGAATAGACATAATAAAAATTTAAAATTTTTTCGAGTTGCAGTACAGCTTTAACTCAATTAT
1 ACTTGAATAAACATAATAAAAATTTAAAATTTTTTCGAGTTGCAGTACAACTTTAACTCAATTAT
97789010 AA
66 AA
97789012 AC
1 AC
97789014 GTCTCTTATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (67 bp):
ACTTGAATAAACATAATAAAAATTTAAAATTTTTTCGAGTTGCAGTACAACTTTAACTCAATTAT
AA
Found at i:97797226 original size:16 final size:16
Alignment explanation
Indices: 97797205--97797236 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97797195 ATTGTAACGC
97797205 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
97797221 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
97797237 TCCTGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.38, G:0.06, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:97798407 original size:8 final size:8
Alignment explanation
Indices: 97798394--97798428 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
97798384 GTAGATCAGC
97798394 AAAAGCCG
1 AAAAGCCG
97798402 AAAAGCCG
1 AAAAGCCG
*
97798410 AAATGCCG
1 AAAAGCCG
97798418 AAAAGCCG
1 AAAAGCCG
97798426 AAA
1 AAA
97798429 GTTTGGCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.51, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:97798749 original size:29 final size:29
Alignment explanation
Indices: 97798633--97798777 Score: 170
Period size: 29 Copynumber: 5.1 Consensus size: 29
97798623 TGAATATAAG
* * * *
97798633 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
97798662 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
97798691 ATGAATTGGGCCTAATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
97798720 GTGAATTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
97798749 GAG-A-TGGG-CTAAGTGGGCCATATGCAT
1 GTGAATTGGGCCTAA-TGGGCCATATGAAT
97798776 GT
1 GT
97798778 ATGTAGGGGT
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.04
27 18 0.18
28 1 0.01
29 79 0.77
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:97802984 original size:13 final size:13
Alignment explanation
Indices: 97802966--97803013 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
97802956 GACTTTTTCA
*
97802966 TAATTTTTTAAAT
1 TAATTTTTTAATT
97802979 TAA-TTTTTAATTT
1 TAATTTTTTAA-TT
**
97802992 TAATTAATTAATT
1 TAATTTTTTAATT
97803005 TAATTTTTT
1 TAATTTTTT
97803014 TTCATAATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
12 7 0.25
13 16 0.57
14 5 0.18
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TAATTTTTTAATT
Found at i:97803013 original size:21 final size:20
Alignment explanation
Indices: 97802966--97803013 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 20
97802956 GACTTTTTCA
97802966 TAATTTTTTAAATTAATTTT
1 TAATTTTTTAAATTAATTTT
97802986 TAA--TTTT-AATTAATTAATT
1 TAATTTTTTAAATTAATT--TT
97803005 TAATTTTTT
1 TAATTTTTT
97803014 TTCATAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.33
18 4 0.17
19 5 0.21
20 3 0.12
21 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TAATTTTTTAAATTAATTTT
Found at i:97803021 original size:26 final size:26
Alignment explanation
Indices: 97802959--97803031 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
97802949 AGTGTCTGAC
** *
97802959 TTTTTCATAATTTTTTAAATTAATTT
1 TTTTTCATAATTAATTAATTTAATTT
97802985 TTAATTT--TAATTAATTAATTTAATTT
1 TT--TTTCATAATTAATTAATTTAATTT
97803011 TTTTTCATAA-TAATT-ATTTAA
1 TTTTTCATAATTAATTAATTTAA
97803032 AATATTATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
24 9 0.22
25 5 0.12
26 23 0.57
28 3 0.08
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTTCATAATTAATTAATTTAATTT
Found at i:97803219 original size:15 final size:16
Alignment explanation
Indices: 97803181--97803222 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
97803171 ATTATTTTAA
97803181 ATTTATAAATAATATAT
1 ATTTA-AAATAATATAT
97803198 ATCTTTAAAATAATAT-T
1 A--TTTAAAATAATATAT
97803215 ATTTAAAA
1 ATTTAAAA
97803223 ATTTTCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
17 3 0.13
18 9 0.39
19 4 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTTAAAATAATATAT
Found at i:97804038 original size:14 final size:14
Alignment explanation
Indices: 97804019--97804046 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97804009 AACAGCCTGT
97804019 ATAACAAACTAACA
1 ATAACAAACTAACA
97804033 ATAACAAACTAACA
1 ATAACAAACTAACA
97804047 GAGTCATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.21, G:0.00, T:0.14
Consensus pattern (14 bp):
ATAACAAACTAACA
Found at i:97808451 original size:18 final size:16
Alignment explanation
Indices: 97808278--97808595 Score: 63
Period size: 17 Copynumber: 19.1 Consensus size: 16
97808268 TTATTTTTTA
97808278 TTATCTATTATAT-TAT
1 TTAT-TATTATATATAT
*
97808294 TATATT-TT-T-TATTT
1 T-TATTATTATATATAT
*
97808308 TTATTATTATATCTAT
1 TTATTATTATATATAT
*
97808324 TCTGTTA-TATATATATT
1 T-TATTATTATATATA-T
* *
97808341 TTACTATGTGGTATATATT
1 TTATTAT-T-ATATATA-T
97808360 TTATTA-TATATATTACT
1 TTATTATTATATA-TA-T
* * * *
97808377 ATATTTTTATATAAAAA
1 TTATTATTATAT-ATAT
*
97808394 GTACTTATTATAT-TATT
1 TTA-TTATTATATATA-T
*
97808411 ATTATTATTTTATATAT
1 -TTATTATTATATATAT
97808428 TT-TTATTATATCATAT
1 TTATTATTATAT-ATAT
* *
97808444 TTCATTATATTTTATTTAT
1 TT-A-T-TATTATATATAT
* * * *
97808463 GTATTTTTACCACATACT
1 TTATTATTA-TATATA-T
* *
97808481 ATATT-TTAT-TATCT
1 TTATTATTATATATAT
*
97808495 ATTATTCCTTATAATATAT
1 -TTATT-ATTAT-ATATAT
* *
97808514 CT-TTCTTATATATAT
1 TTATTATTATATATAT
* *
97808529 ATATTA-TATAGAT-T
1 TTATTATTATATATAT
*
97808543 TTATTA-TATATATTT
1 TTATTATTATATATAT
97808558 TATATTATTTATTATATGAT
1 T-TATTA-TTA-TATAT-AT
97808578 TTA-TATTACTATATAT
1 TTATTATTA-TATATAT
97808594 TT
1 TT
97808596 TATTTGTAAA
Statistics
Matches: 222, Mismatches: 44, Indels: 72
0.66 0.13 0.21
Matches are distributed among these distances:
13 5 0.02
14 19 0.09
15 32 0.14
16 48 0.22
17 49 0.22
18 30 0.14
19 30 0.14
20 9 0.04
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (16 bp):
TTATTATTATATATAT
Found at i:97808459 original size:15 final size:14
Alignment explanation
Indices: 97808399--97808462 Score: 57
Period size: 15 Copynumber: 4.7 Consensus size: 14
97808389 AAAAAGTACT
97808399 TATTATATTATTAT-
1 TATTAT-TTATTATA
97808413 TATTA-TT-TTATA
1 TATTATTTATTATA
97808425 TATT-TTTATTATA
1 TATTATTTATTATA
97808438 TCA-TATTTCATTATA
1 T-ATTATTT-ATTATA
*
97808453 TTTTATTTAT
1 TATTATTTAT
97808463 GTATTTTTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 14
0.74 0.02 0.25
Matches are distributed among these distances:
11 4 0.10
12 8 0.19
13 7 0.17
14 11 0.26
15 12 0.29
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTATTTATTATA
Found at i:97808500 original size:41 final size:38
Alignment explanation
Indices: 97808406--97808500 Score: 91
Period size: 39 Copynumber: 2.4 Consensus size: 38
97808396 ACTTATTATA
** *
97808406 TTATTATTATTATTTTATATATTTTTATTATATCATATT
1 TTATTATTATTA-TTTATATATTTTTACCACATCATATT
* * *
97808445 TCATTATATTTTATTTATGTATTTTTACCACATACTATATT
1 TTATTAT-TATTATTTATATATTTTTACCACAT-C-ATATT
97808486 TTATTATCTATTATT
1 TTATTAT-TATTATT
97808501 CCTTATAATA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
39 22 0.50
40 5 0.11
41 17 0.39
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.62
Consensus pattern (38 bp):
TTATTATTATTATTTATATATTTTTACCACATCATATT
Found at i:97808549 original size:14 final size:14
Alignment explanation
Indices: 97808530--97808599 Score: 62
Period size: 14 Copynumber: 5.3 Consensus size: 14
97808520 TATATATATA
97808530 TATTATATAGATTT
1 TATTATATAGATTT
*
97808544 TATTATATATATTT
1 TATTATATAGATTT
97808558 TA-TAT-T--A-TT
1 TATTATATAGATTT
97808567 TATTATAT-GATTT
1 TATTATATAGATTT
*
97808580 ATATTACTATATATTT
1 -TATTA-TATAGATTT
97808596 TATT
1 TATT
97808600 TGTAAATTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
9 4 0.09
10 4 0.09
11 1 0.02
12 2 0.04
13 5 0.11
14 20 0.43
15 7 0.15
16 4 0.09
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (14 bp):
TATTATATAGATTT
Found at i:97808552 original size:40 final size:36
Alignment explanation
Indices: 97808519--97808611 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 36
97808509 TATATCTTTC
97808519 TTATATATATATATTATATAGATTTTATTATATATATT
1 TTATAT-TATATATTATAT-GATTTTATTATATATATT
*
97808557 TTATATTATTTATTATATGATTTATATTACTATATATT
1 TTATATTATATATTATATGATTT-TATTA-TATATATT
* *
97808595 TTAT-TTGTAAATTATAT
1 TTATATTATATATTATAT
97808612 TATACACTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
36 5 0.10
37 26 0.53
38 18 0.37
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (36 bp):
TTATATTATATATTATATGATTTTATTATATATATT
Found at i:97808553 original size:23 final size:23
Alignment explanation
Indices: 97808519--97808583 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
97808509 TATATCTTTC
97808519 TTATATATATATATTATATAGAT-T
1 TTAT-TATATATATTATATA-ATAT
* *
97808543 TTATTATATATATTTTATATTAT
1 TTATTATATATATTATATAATAT
97808566 TTATTATATGAT-TTATAT
1 TTATTATAT-ATATTATAT
97808584 TACTATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
22 1 0.03
23 29 0.81
24 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (23 bp):
TTATTATATATATTATATAATAT
Found at i:97808600 original size:21 final size:20
Alignment explanation
Indices: 97808540--97808600 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 20
97808530 TATTATATAG
97808540 ATTT-TATTATATATATTTT
1 ATTTATATTATATATATTTT
*
97808559 ATATTAT-TTAT-TATA--TG
1 AT-TTATATTATATATATTTT
97808576 ATTTATATTACTATATATTTT
1 ATTTATATTA-TATATATTTT
97808597 ATTT
1 ATTT
97808601 GTAAATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 4 0.12
17 6 0.18
18 1 0.03
19 10 0.30
20 6 0.18
21 6 0.18
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
ATTTATATTATATATATTTT
Found at i:97820821 original size:88 final size:87
Alignment explanation
Indices: 97820703--97821165 Score: 350
Period size: 88 Copynumber: 5.3 Consensus size: 87
97820693 CAAATCGAAA
* * *
97820703 ACATAGCAGATCTGACTTTCAGATATTTTCACATCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTAACTTTCAGAT-GTTTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
*
97820768 CTGCATTTCGATGGAGAGCAAAT
65 CTGCATTTCGACGGAGAGCAAAT
** *
97820791 ACATAGCAGATCTAACCTTT-AGATGATTT--CACTGAAGCAGATCCAAGAT----GATTTGGCA
1 ACATAGCAGATCTAA-CTTTCAGATG-TTTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA
** * * * *
97820849 TTCTTGTGTTTAC-AAGGAACAAATCAAAG
64 -TC-TGCATTT-CGACGG---AGAGCAAAT
* *
97820878 ACATAGCAGATTTGACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTAACTTTCAGATGTT-TCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
*
97820943 CT-CTATTTCGACGGAGAGCAGAT
65 CTGC-ATTTCGACGGAGAGCAAAT
* * ** *
97820966 ACATAGTAGATCTAACCTTT-AGATGTTT-ATACTGAAGCAGATCCAAGAT----GATTTGGCAT
1 ACATAGCAGATCTAA-CTTTCAGATGTTTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA-
** *
97821025 TCTTGTGTTT--ACAGG-GAACAAAT
64 TC-TGCATTTCGAC-GGAGAGCAAAT
* *
97821048 CGAAGACATAGCAGATTTGACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCT
1 -----ACATAGCAGATCTAACTTTCAGATGTT-TCACACCAAAGCAGATCCAAGATAACAGATCT
* *
97821113 GGCATCTCCATTTCGACGGAGAGCAGAT
60 GGCATCTGCATTTCGACGGAGAGCAAAT
*
97821141 ACATAGCAGATCTAACCTTCAGATG
1 ACATAGCAGATCTAACTTTCAGATG
97821166 ATTTTACTGA
Statistics
Matches: 287, Mismatches: 50, Indels: 76
0.69 0.12 0.18
Matches are distributed among these distances:
82 24 0.08
83 6 0.02
84 12 0.04
85 1 0.00
86 45 0.16
87 45 0.16
88 68 0.24
89 44 0.15
90 1 0.00
91 11 0.04
92 6 0.02
93 24 0.08
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (87 bp):
ACATAGCAGATCTAACTTTCAGATGTTTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATC
TGCATTTCGACGGAGAGCAAAT
Found at i:97820902 original size:87 final size:86
Alignment explanation
Indices: 97820654--97821287 Score: 356
Period size: 87 Copynumber: 7.3 Consensus size: 86
97820644 CAGGTTATGT
* *
97820654 AGATCAAAGATAATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAA-ACATAGCAGATCTGA
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG-ACAAATC-AAAGACATAGCAGATCTGA
* * *
97820718 CTTTCAGATATTTTCACATCAAAGC
64 CTTTCAGATGTTTACAC-T-GAAGC
* ** * * * *
97820743 AGATCCAAGATAACAGATCTGGCA-TC-TGCATTT-CGATGG--AGAGCAAATACATAGCAGATC
1 AGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGGACAAATCAAAGACATAGCAGATC
*
97820803 TAACCTTT-AGATGATTT-CACTGAAGC
61 TGA-CTTTCAGATG-TTTACACTGAAGC
*
97820829 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGAC
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG-ACAAATCAAAGACATAGCAGATCTGAC
**
97820894 TTTCAGATGTTCTCACACCAAAGC
65 TTTCAGATGTT-T-ACACTGAAGC
* * * * * * * * *
97820918 AGATCCAAGATAACAGATCTGGCA-TC-TCTATTT-CGACGG--AGAGCAGATACATAGTAGATC
1 AGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGGACAAATCAAAGACATAGCAGATC
* *
97820978 TAACCTTT-AGATGTTTATACTGAAGC
61 TGA-CTTTCAGATGTTTACACTGAAGC
* * *
97821004 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATTTGAC
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG-ACAAATCAAAGACATAGCAGATCTGAC
**
97821069 TTTCAGATGTTCTCACACCAAAGC
65 TTTCAGATGTT-T-ACACTGAAGC
* *** * * * * *
97821093 AGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG--AGAGCAGATACATAGCAGATC
1 AGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGGACAAATCAAAGACATAGCAGATC
* * *
97821153 TAACCTTCAGATGATTT-TACTGAAGC
61 TGACTTTCAGATG-TTTACACTGAAGC
* * * * * * * *
97821179 AGATCCGAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAACAGATTTGGC
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGA-CAAATCAAAGACATAGCAGATCTGAC
*
97821244 TTTCACG-TGTTTACGCTGAAGC
65 TTTCA-GATGTTTACACTGAAGC
*
97821266 AGATCTAAGATGATTTGGCATT
1 AGATCCAAGATGATTTGGCATT
97821288 TCTGTATTTG
Statistics
Matches: 407, Mismatches: 91, Indels: 96
0.69 0.15 0.16
Matches are distributed among these distances:
82 24 0.06
83 5 0.01
84 22 0.05
85 3 0.01
86 62 0.15
87 100 0.25
88 77 0.19
89 59 0.14
90 3 0.01
91 23 0.06
92 6 0.01
93 23 0.06
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (86 bp):
AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGACAAATCAAAGACATAGCAGATCTGACT
TTCAGATGTTTACACTGAAGC
Found at i:97820961 original size:175 final size:174
Alignment explanation
Indices: 97820654--97821248 Score: 942
Period size: 175 Copynumber: 3.4 Consensus size: 174
97820644 CAGGTTATGT
* * *
97820654 AGATCAAAGATAATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAA-ACATAGCAGATCTGA
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATC-AAAGACATAGCAGATTTGA
* * * *
97820718 CTTTCAGATATTTTCACATCAAAGCAGATCCAAGATAACAGATCTGGCATCTGCATTTCGATGGA
65 CTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCT-CATTTCGACGGA
* *
97820783 GAGCAAATACATAGCAGATCTAACCTTTAGATGATTTCACTGAAGC
129 GAGCAGATACATAGCAGATCTAACCTTTAGATGATTTTACTGAAGC
97820829 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGAC
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGAC
97820894 TTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCTATTTCGACGGAG
66 TTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTC-ATTTCGACGGAG
*
97820959 AGCAGATACATAGTAGATCTAACCTTTAGATG-TTTATACTGAAGC
130 AGCAGATACATAGCAGATCTAACCTTTAGATGATTT-TACTGAAGC
* *
97821004 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATTTGAC
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGAC
97821069 TTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAG
66 TTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCT-CATTTCGACGGAG
*
97821134 AGCAGATACATAGCAGATCTAACCTTCAGATGATTTTACTGAAGC
130 AGCAGATACATAGCAGATCTAACCTTTAGATGATTTTACTGAAGC
* * * * * * * *
97821179 AGATCCGAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAACAGATTTGGC
1 AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGAC
97821244 TTTCA
66 TTTCA
97821249 CGTGTTTACG
Statistics
Matches: 393, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
174 7 0.02
175 382 0.97
176 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (174 bp):
AGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATTTGAC
TTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCATTTCGACGGAGA
GCAGATACATAGCAGATCTAACCTTTAGATGATTTTACTGAAGC
Found at i:97823110 original size:41 final size:41
Alignment explanation
Indices: 97823008--97823110 Score: 97
Period size: 39 Copynumber: 2.6 Consensus size: 41
97822998 TATAAAAAAG
* ** *
97823008 TACT-TATTATATTATTATTATTATATATATTTTTATTATA
1 TACTATATTTTATTATTATTATTATATATATTTTTACCACA
* * *
97823048 T-C-ATATTTCATTATATTTTATT-TATGTATTTTTACCACA
1 TACTATATTTTATTAT-TATTATTATATATATTTTTACCACA
97823087 TACTATATTTTATTATCTATTATT
1 TACTATATTTTATTAT-TATTATT
97823111 CCTTATAATA
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
39 24 0.49
40 8 0.16
41 17 0.35
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (41 bp):
TACTATATTTTATTATTATTATTATATATATTTTTACCACA
Found at i:97823148 original size:14 final size:14
Alignment explanation
Indices: 97823129--97823214 Score: 88
Period size: 14 Copynumber: 6.1 Consensus size: 14
97823119 TATATCTTTC
97823129 TTATATATATTATA
1 TTATATATATTATA
* *
97823143 TTATATAGATTTTA
1 TTATATATATTATA
97823157 TTATATATA-TATA
1 TTATATATATTATA
*
97823170 TTTTATATTATT-TA
1 TTATATA-TATTATA
97823184 TTATATGAT-TTATA
1 TTATAT-ATATTATA
*
97823198 TTACTATATATTTTA
1 TTA-TATATATTATA
97823213 TT
1 TT
97823215 TGTAAGTTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
13 11 0.19
14 37 0.63
15 11 0.19
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.60
Consensus pattern (14 bp):
TTATATATATTATA
Found at i:97823198 original size:32 final size:34
Alignment explanation
Indices: 97823130--97823198 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
97823120 ATATCTTTCT
* *
97823130 TATATATATTATATTATATAGATTTTATTATATA
1 TATATATATTATATTATATAGATTATATGATATA
* * *
97823164 TATATATTTTATATTAT-T-TATTATATGATTTA
1 TATATATATTATATTATATAGATTATATGATATA
97823196 TAT
1 TAT
97823199 TACTATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 13 0.43
33 1 0.03
34 16 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (34 bp):
TATATATATTATATTATATAGATTATATGATATA
Found at i:97829017 original size:4 final size:4
Alignment explanation
Indices: 97829008--97829041 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
97828998 TTGAGTATTA
97829008 TTAT TTAT TTAAT TTGAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TT-AT TT-AT TTAT TTAT TTAT TTAT
97829042 AAATAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (4 bp):
TTAT
Found at i:97829274 original size:14 final size:14
Alignment explanation
Indices: 97829251--97829303 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
97829241 ACTAGAAAAG
97829251 AAAATCATTTTCCA
1 AAAATCATTTTCCA
* *
97829265 AAAATTATTTTTCA
1 AAAATCATTTTCCA
*
97829279 GAAATCATTTTCCA
1 AAAATCATTTTCCA
97829293 GAAAAT-ATTTT
1 -AAAATCATTTT
97829304 ACTGACAAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
14 28 0.88
15 4 0.12
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.42
Consensus pattern (14 bp):
AAAATCATTTTCCA
Done.