Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 294 of 332
Found at i:97829606 original size:25 final size:25
Alignment explanation
Indices: 97829578--97829634 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
97829568 ATTTAACGGA
97829578 AAAATTAGCATGAGTGGTTGGAATT
1 AAAATTAGCATGAGTGGTTGGAATT
97829603 AAAATTAGCATGAGTGGTTGGAATT
1 AAAATTAGCATGAGTGGTTGGAATT
97829628 AAAATTA
1 AAAATTA
97829635 AATCATCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (25 bp):
AAAATTAGCATGAGTGGTTGGAATT
Found at i:97832956 original size:10 final size:10
Alignment explanation
Indices: 97832941--97833000 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
97832931 TAATTCTAGG
97832941 ATTTAT-TTT
1 ATTTATCTTT
97832950 CATTTATCTTT
1 -ATTTATCTTT
97832961 ATTTATCTTT
1 ATTTATCTTT
* *
97832971 AATTATCATT
1 ATTTATCTTT
97832981 ATTTAT-TTGT
1 ATTTATCTT-T
97832991 ATTTATCTTT
1 ATTTATCTTT
97833001 TAGAATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 1 0.02
10 37 0.86
11 5 0.12
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:97833754 original size:17 final size:18
Alignment explanation
Indices: 97833723--97833756 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
97833713 TATTCCTCAT
97833723 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
97833741 TTTAATTT-TGCAATTT
1 TTTAATTTCTGCAATTT
97833757 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:97833931 original size:12 final size:12
Alignment explanation
Indices: 97833914--97833946 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
97833904 CTACTTCCCC
*
97833914 TTTACTATTATT
1 TTTACTATTATG
97833926 TTTACTATTATG
1 TTTACTATTATG
97833938 TTTACTATT
1 TTTACTATT
97833947 TTACAGGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.64
Consensus pattern (12 bp):
TTTACTATTATG
Found at i:97834749 original size:150 final size:150
Alignment explanation
Indices: 97834478--97834774 Score: 522
Period size: 150 Copynumber: 2.0 Consensus size: 150
97834468 CCCTACAAGC
*
97834478 ATTTAAAAGAATTCCATATGGTTTGCCTTAATATGAAACCTGAGGGGGTAATTGAGGATCAAATT
1 ATTTAAAAGAATTCCATATGGTTTGCCTTAATATGAAACCTGAGGGGGTAACTGAGGATCAAATT
97834543 AAACTGCATGCTTTCCCTTTTTCCTTAGTAGATTCTGCTAGGGAATGGTTATTTTATTTACCTCC
66 AAACTGCATGCTTTCCCTTTTTCCTTAGTAGATTCTGCTAGGGAATGGTTATTTTATTTACCTCC
97834608 TGAATCTATAACAACTTAAT
131 TGAATCTATAACAACTTAAT
* * *
97834628 ATTTAAAATAATTTCATATGGTTTGCCTTAGTATGAAACCTGAGGGGGTAACTGAGGATCAAATT
1 ATTTAAAAGAATTCCATATGGTTTGCCTTAATATGAAACCTGAGGGGGTAACTGAGGATCAAATT
* *
97834693 AAACTGCATGCTTTCCCTTTTTCCTTAGTTGATTCTGCTAGGGAATGGTTATTTTATTTACCTCT
66 AAACTGCATGCTTTCCCTTTTTCCTTAGTAGATTCTGCTAGGGAATGGTTATTTTATTTACCTCC
* *
97834758 TGGATCTGTAACAACTT
131 TGAATCTATAACAACTT
97834775 GGGCTGACAT
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 139 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (150 bp):
ATTTAAAAGAATTCCATATGGTTTGCCTTAATATGAAACCTGAGGGGGTAACTGAGGATCAAATT
AAACTGCATGCTTTCCCTTTTTCCTTAGTAGATTCTGCTAGGGAATGGTTATTTTATTTACCTCC
TGAATCTATAACAACTTAAT
Found at i:97836899 original size:4 final size:4
Alignment explanation
Indices: 97836890--97836940 Score: 54
Period size: 4 Copynumber: 12.8 Consensus size: 4
97836880 CAACCCAATT
97836890 TTTA TTTA TTTA TTTA TTTA TTTTA TCTTA -TTA TTT- TATTA TTTA -TTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA T-TTA TTTA TTTA T-TTA TTTA TTTA
97836938 TTT
1 TTT
97836941 TCAGATATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
3 7 0.17
4 26 0.63
5 8 0.20
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:97836923 original size:13 final size:13
Alignment explanation
Indices: 97836890--97836936 Score: 64
Period size: 12 Copynumber: 3.8 Consensus size: 13
97836880 CAACCCAATT
97836890 TTTATTTA-TTTA
1 TTTATTTATTTTA
97836902 TTTATTTATTTTA
1 TTTATTTATTTTA
97836915 TCTTA-TTATTTTA
1 T-TTATTTATTTTA
97836928 -TTATTTATT
1 TTTATTTATT
97836937 ATTTTCAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.09
12 13 0.41
13 13 0.41
14 3 0.09
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:97849026 original size:12 final size:12
Alignment explanation
Indices: 97849009--97849089 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 12
97848999 TTCAATATGA
97849009 AAATAATAATAT
1 AAATAATAATAT
97849021 AAATAATAATAT
1 AAATAATAATAT
* *
97849033 ACATGAA-AAAAT
1 AAAT-AATAATAT
* *
97849045 ATATAAT-AGAT
1 AAATAATAATAT
*
97849056 -AATAACAATAT
1 AAATAATAATAT
* *
97849067 GAATAATTATA-
1 AAATAATAATAT
97849078 AAATATATAATA
1 AAATA-ATAATA
97849090 CGTATATTCA
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
10 4 0.08
11 12 0.23
12 35 0.66
13 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (12 bp):
AAATAATAATAT
Found at i:97849069 original size:30 final size:30
Alignment explanation
Indices: 97849001--97849089 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
97848991 ACTATCAATT
97849001 CAATATGAAAATAATA-AT-ATAAATAATAA
1 CAATATGAAAA-AATATATAATAAATAATAA
* * *
97849030 TATACATGAAAAAATATATAATAGATAATAA
1 CA-ATATGAAAAAATATATAATAAATAATAA
* * * *
97849061 CAATATGAATAATTATAAAATATATAATA
1 CAATATGAAAAAATATATAATAAATAATA
97849090 CGTATATTCA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 5 0.10
30 32 0.67
31 11 0.23
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.30
Consensus pattern (30 bp):
CAATATGAAAAAATATATAATAAATAATAA
Found at i:97851137 original size:206 final size:206
Alignment explanation
Indices: 97850783--97851156 Score: 595
Period size: 206 Copynumber: 1.8 Consensus size: 206
97850773 TGTTTCTTTG
* * *
97850783 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCAGCGTAAGCACGCAAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGCAAA
97850848 AACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTAAATC
66 AACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTAAATC
* * * *
97850913 TGCTTCAGTATAAACATCTGAAGGTTAGATTTGCTATGTGTCTGCCCTCCGTCGAATATGGAGAC
131 TACTTCAGCATAAACATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGAC
97850978 GCCAAACTTCA
196 GCCAAACTTCA
* **
97850989 ATTTGTTCTCTGACAATACATAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGCAAA
* * * * **
97851054 AGCCAAATCAGTTATGTTTTCGATTTTCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTAAATC
*
97851119 TACTTCAGCATAAACATCTAAAGGTTGGATCTGCTATG
131 TACTTCAGCATAAACATCTAAAGGTTAGATCTGCTATG
97851157 CTGTGGCCTA
Statistics
Matches: 151, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
206 151 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (206 bp):
ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAGCACGCAAA
AACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTAAATC
TACTTCAGCATAAACATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGAC
GCCAAACTTCA
Found at i:97863227 original size:12 final size:12
Alignment explanation
Indices: 97863204--97863234 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
97863194 CTATCAATTC
97863204 AATATGAAATAAT
1 AATAT-AAATAAT
97863217 AATATAAATAAT
1 AATATAAATAAT
97863229 AATATA
1 AATATA
97863235 CATGAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
AATATAAATAAT
Found at i:97864437 original size:16 final size:17
Alignment explanation
Indices: 97864399--97864445 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
97864389 GAGTTAAAAT
97864399 ATAATTT-TATTATTTTA
1 ATAATTTATA-TATTTTA
*
97864416 ATAATTTATATATTTTT
1 ATAATTTATATATTTTA
*
97864433 A-AATTTTTATATT
1 ATAATTTATATATT
97864446 AAATTAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 11 0.41
17 14 0.52
18 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATAATTTATATATTTTA
Found at i:97869420 original size:3 final size:3
Alignment explanation
Indices: 97869380--97869466 Score: 51
Period size: 3 Copynumber: 30.7 Consensus size: 3
97869370 GAAACACAAG
* * *
97869380 AAT AAT GAT AAT AGT AAT -AT AA- AATT AAT GAT -AT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT
* * * * *
97869422 AAT AAT AAT AAG CAT AAA AAT AA- AAT -AT AAT TAT AGT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97869467 CATTAAATTA
Statistics
Matches: 62, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
2 12 0.19
3 48 0.77
4 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97869426 original size:11 final size:11
Alignment explanation
Indices: 97869380--97869431 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
97869370 GAAACACAAG
97869380 AATAATGATAAT
1 AATAAT-ATAAT
*
97869392 AGTAATATAA-
1 AATAATATAAT
97869402 AATTAATGAT-AT
1 AA-TAAT-ATAAT
97869414 AATAATATAAT
1 AATAATATAAT
97869425 AATAATA
1 AATAATA
97869432 AGCATAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
10 3 0.09
11 22 0.65
12 9 0.26
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (11 bp):
AATAATATAAT
Found at i:97869466 original size:22 final size:22
Alignment explanation
Indices: 97869390--97869466 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 22
97869380 AATAATGATA
*
97869390 ATAGTAAT-ATAAAAT-TAATG
1 ATAGTAATAATAAAATATAATT
*
97869410 ATA-TAATAATATAATAATAA-T
1 ATAGTAATAATAAAAT-ATAATT
*
97869431 A-AGCATAAAAATAAAATATAATT
1 ATAG--TAATAATAAAATATAATT
97869454 ATAGTAATAATAA
1 ATAGTAATAATAA
97869467 CATTAAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
19 4 0.09
20 10 0.23
21 1 0.02
22 15 0.34
23 12 0.27
24 2 0.05
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.32
Consensus pattern (22 bp):
ATAGTAATAATAAAATATAATT
Found at i:97870969 original size:44 final size:44
Alignment explanation
Indices: 97870831--97871255 Score: 251
Period size: 44 Copynumber: 9.4 Consensus size: 44
97870821 ATTCCATTAT
* * * *
97870831 AACTTCAGGGAGATAACG-TTTATAGCTTTAATCTGCTCTACTGC
1 AACTTCAGGGAGATAA-GATCTATAACTTCAATCTGCTCCACTGC
* * * * * * *
97870875 AACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCGACTGT
1 AACTTCAGGGAGATAAGATCT-ATAACTTCAATCTGCTCCACTGC
*
97870920 AACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTGC
1 AACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGC
* ** * * * * *
97870964 AACTTCAGGGAAATAAGATTCGCTATCTTCGATCTACTCTACTGT
1 AACTTCAGGGAGATAAGA-TCTATAACTTCAATCTGCTCCACTGC
* * * * *
97871009 AATTTTAGAGAGATAAGATCTATAATTTCAATCTGCTCTACTGC
1 AACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGC
* * * * * *
97871053 AACTTCAGGGAGATAAGATTTGTAATTTGTAGCTTTAATATGTTCCACTAC
1 AACTTCAGGGAGATAAGA--TCT-A----TAACTTCAATCTGCTCCACTGC
* * ** * * * *
97871104 AACTTTAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCACTAC
1 AACTTCAGGGAGATAAGA-TCTATAACTTCAATCTGCTCCACTGC
* * **
97871149 AACTTCAGGGAGATAAGA-CTTATAACTTCAACCTACTCCACTAT
1 AACTTCAGGGAGATAAGATC-TATAACTTCAATCTGCTCCACTGC
* * ** * * * *
97871193 AACTTCAGGGAGATAAGGTTTATGGCTTTAATCTACTCTACTAC
1 AACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGC
**
97871237 AACTTCAAAGAGATAAGAT
1 AACTTCAGGGAGATAAGAT
97871256 TTGCCATAAT
Statistics
Matches: 293, Mismatches: 76, Indels: 24
0.75 0.19 0.06
Matches are distributed among these distances:
43 2 0.01
44 153 0.52
45 102 0.35
46 2 0.01
47 1 0.00
50 2 0.01
51 31 0.11
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGC
Found at i:97870981 original size:89 final size:89
Alignment explanation
Indices: 97870830--97871259 Score: 353
Period size: 89 Copynumber: 4.8 Consensus size: 89
97870820 CATTCCATTA
* * * *
97870830 TAACTTCAGGGAGATAACG-TTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
1 TAACTTCAGGGAGATAA-GATCTATAACTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGAT
97870894 TTGCTATCTTCAATCTACTCGACTG
65 TTGCTATCTTCAATCTACTCGACTG
* * *
97870919 TAACTTCAGGGAGATAAGATCTATAACTTCAACCTGCTCCACTGCAACTTCAGGGAAATAAGATT
1 TAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
* * *
97870984 CGCTATCTTCGATCTACTCTACTG
66 TGCTATCTTCAATCTACTCGACTG
* * * *
97871008 TAATTTTAGAGAGATAAGATCTATAATTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
1 TAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
* * ** * *
97871073 TG-TAATTTGTAGCTTTAATATGTTCCACTA
66 TGCT-A----T--CTTCAATCTACTCGACTG
* * * ** * * * * * *
97871103 CAACTTTAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGAC
1 TAACTTCAGGGAGATAAGA-TCTATAACTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGAT
* * * * *
97871168 TT-ATAACTTCAACCTACTCCACTA
65 TTGCTATCTTCAATCTACTCGACTG
* * ** * * * **
97871192 TAACTTCAGGGAGATAAGGTTTATGGCTTTAATCTACTCTACTACAACTTCAAAGAGATAAGATT
1 TAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
97871257 TGC
66 TGC
97871260 CATAATAACT
Statistics
Matches: 270, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
88 38 0.14
89 165 0.61
93 1 0.00
95 27 0.10
96 39 0.14
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (89 bp):
TAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
TGCTATCTTCAATCTACTCGACTG
Found at i:97871162 original size:140 final size:140
Alignment explanation
Indices: 97870956--97871209 Score: 332
Period size: 140 Copynumber: 1.8 Consensus size: 140
97870946 TTCAACCTGC
* * * ** * *
97870956 TCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCGATCTACTCTACTGTAATTTTAGAGAG
1 TCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTAGATCTACTCCACTACAACTTCAGAGAG
* * * * *
97871021 ATAAGA-TCTATAATTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGTAATTTGTAG
66 ATAAGACT-TATAACTTCAACCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAATTTGTAG
97871085 CTTTAATATGT
130 CTTTAATATGT
* * *
97871096 TCCACTACAACTTTAGGGAAATAAGATTCGCTATCTTTAG-TCTGCTCCACTACAACTTCAGGGA
1 TCCACTACAACTTCAGGGAAATAAGATTCGCTATC-TTAGATCTACTCCACTACAACTTCAGAGA
*
97871160 GATAAGACTTATAACTTCAACCTACTCCACTATAACTTCAGGGAGATAAG
65 GATAAGACTTATAACTTCAACCTACTCCACTACAACTTCAGGGAGATAAG
97871210 GTTTATGGCT
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
140 92 0.96
141 4 0.04
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (140 bp):
TCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTAGATCTACTCCACTACAACTTCAGAGAG
ATAAGACTTATAACTTCAACCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAATTTGTAGC
TTTAATATGT
Found at i:97883195 original size:34 final size:34
Alignment explanation
Indices: 97883137--97883244 Score: 103
Period size: 33 Copynumber: 3.2 Consensus size: 34
97883127 AGGAAACACA
* * * *
97883137 ATAATAATGGTAATAGTAATATAAAATTAATGAT
1 ATAATAATAGTAATAATAACATAAAATTAATAAT
**
97883171 ATAATAATA-TAATAATAAGCATAAAAAGAA-AAT
1 ATAATAATAGTAATAATAA-CATAAAATTAATAAT
* *
97883204 ATAATTATAGTAATAATAACATTAAATTAATTAAT
1 ATAATAATAGTAATAATAACATAAAATTAA-TAAT
*
97883239 AAAATA
1 ATAATA
97883245 GCAAAAAAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
33 26 0.45
34 25 0.43
35 7 0.12
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.32
Consensus pattern (34 bp):
ATAATAATAGTAATAATAACATAAAATTAATAAT
Found at i:97884385 original size:15 final size:16
Alignment explanation
Indices: 97884367--97884405 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
97884357 ATGGTTTAGG
97884367 TTTGGTTTG-TTTGGA
1 TTTGGTTTGTTTTGGA
97884382 TTTGGTTTGTTTTGGA
1 TTTGGTTTGTTTTGGA
*
97884398 TTTTGTTT
1 TTTGGTTT
97884406 ATAAAATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.05, C:0.00, G:0.28, T:0.67
Consensus pattern (16 bp):
TTTGGTTTGTTTTGGA
Found at i:97885016 original size:30 final size:32
Alignment explanation
Indices: 97884997--97885058 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
97884987 GCCTATGTGG
97884997 CAAGCTCGTGTGGCCCACACACCCAACTTGGC
1 CAAGCTCGTGTGGCCCACACACCCAACTTGGC
* *
97885029 CTAGCTCGTGTGGCCCACACAGCCACACTT
1 CAAGCTCGTGTGGCCCACACACCCA-ACTT
97885059 ACACCATCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.21, C:0.40, G:0.21, T:0.18
Consensus pattern (32 bp):
CAAGCTCGTGTGGCCCACACACCCAACTTGGC
Found at i:97886345 original size:23 final size:23
Alignment explanation
Indices: 97886319--97886376 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
97886309 TTTATTCCTA
* *
97886319 ATGGGATATTATATGATATTTTT
1 ATGGGATATTATAGGATATTATT
*
97886342 ATGGGATATGATAGGATATTATT
1 ATGGGATATTATAGGATATTATT
97886365 ATGGGATATTAT
1 ATGGGATATTAT
97886377 TTAGTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (23 bp):
ATGGGATATTATAGGATATTATT
Found at i:97886422 original size:74 final size:78
Alignment explanation
Indices: 97886277--97886424 Score: 205
Period size: 74 Copynumber: 1.9 Consensus size: 78
97886267 TAGGTGTTAA
* * * *
97886277 GATATTATTATGAGATATTATATTTTAGCAATTTTATTCCTAATGGGATATTATATGATATTTTT
1 GATATTATTATGAGATATTATATTTTAGCAATTTGATTCCTAAT-GGAGATTATAGGATATTATT
97886342 ATGGGATATGATAG
65 ATGGGATATGATAG
* *
97886356 GATATTATTATGGGATA-T-TA-TTTAGTAATTTGATTCCTAAT-GAGATTATAGGATATTATTA
1 GATATTATTATGAGATATTATATTTTAGCAATTTGATTCCTAATGGAGATTATAGGATATTATTA
97886417 TGGGATAT
66 TGGGATAT
97886425 TATCTTTTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
74 25 0.40
76 19 0.30
77 2 0.03
78 1 0.02
79 16 0.25
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (78 bp):
GATATTATTATGAGATATTATATTTTAGCAATTTGATTCCTAATGGAGATTATAGGATATTATTA
TGGGATATGATAG
Found at i:97896605 original size:7 final size:6
Alignment explanation
Indices: 97896582--97896623 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
97896572 TAACAAGAAG
* *
97896582 AATAAA AATAAA AATAAA AGATAAA CATAAA CATAAA AATAA
1 AATAAA AATAAA AATAAA A-ATAAA AATAAA AATAAA AATAA
97896624 TCGGACTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 28 0.85
7 5 0.15
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:97904901 original size:23 final size:22
Alignment explanation
Indices: 97904863--97904938 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
97904853 TATAAAACCT
97904863 AATAAAAATAAGCTTAAAGA-AA
1 AATAAAAATAAGCTTAAA-ATAA
97904885 AATAAAAAGT-AGTCTTAAAATAA
1 AATAAAAA-TAAG-CTTAAAATAA
* *
97904908 AATAAAAGTAA-C--AACATAA
1 AATAAAAATAAGCTTAAAATAA
97904927 AATAATAAATAA
1 AATAA-AAATAA
97904939 AATTTTTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 11 0.24
20 5 0.11
21 1 0.02
22 12 0.26
23 17 0.37
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (22 bp):
AATAAAAATAAGCTTAAAATAA
Found at i:97904917 original size:22 final size:23
Alignment explanation
Indices: 97904863--97904914 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
97904853 TATAAAACCT
97904863 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
97904885 AATAAAAAGTAGTCTTAAA-ATAA
1 AATAAAAAGTAGTCTTAAAGA-AA
97904908 AATAAAA
1 AATAAAA
97904915 GTAACAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:97914160 original size:13 final size:13
Alignment explanation
Indices: 97914142--97914174 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
97914132 GGGTTCACAT
97914142 GGCCGTGTCGCAC
1 GGCCGTGTCGCAC
97914155 GGCCGTGTCGCAC
1 GGCCGTGTCGCAC
97914168 GGCCGTG
1 GGCCGTG
97914175 ACTAGCTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.36, G:0.42, T:0.15
Consensus pattern (13 bp):
GGCCGTGTCGCAC
Found at i:97919071 original size:23 final size:21
Alignment explanation
Indices: 97919038--97919083 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
97919028 GAAGAGAATT
*
97919038 AAAAATTAAATTAAAACAAAA
1 AAAAATTAAATAAAAACAAAA
*
97919059 AAAAATTTGAAATAAAAATAAAA
1 AAAAA-TT-AAATAAAAACAAAA
97919082 AA
1 AA
97919084 TGGCTAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 2 0.10
23 14 0.67
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAATTAAATAAAAACAAAA
Found at i:97922461 original size:14 final size:14
Alignment explanation
Indices: 97922422--97922461 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
97922412 ACAGTATTTT
97922422 AAGATTACTGTTATC
1 AAGA-TACTGTTATC
* *
97922437 AAAATATTGTTATC
1 AAGATACTGTTATC
97922451 AAGATACTGTT
1 AAGATACTGTT
97922462 GAAAGTCATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 18 0.86
15 3 0.14
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (14 bp):
AAGATACTGTTATC
Found at i:97929410 original size:34 final size:34
Alignment explanation
Indices: 97929327--97929417 Score: 128
Period size: 34 Copynumber: 2.7 Consensus size: 34
97929317 TAGACCCTGG
* * * *
97929327 AGTAAACCATCAATCATTAACAACTTTCCTTCAG
1 AGTAAACCATCACTCATTCACAACTTTCCTCCAC
*
97929361 AGTAAAACATCACTCATTCACAACTTTCCTCCAC
1 AGTAAACCATCACTCATTCACAACTTTCCTCCAC
*
97929395 AGTAAACCATTACTCATTCACAA
1 AGTAAACCATCACTCATTCACAA
97929418 GTTCCTAAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.38, C:0.30, G:0.04, T:0.27
Consensus pattern (34 bp):
AGTAAACCATCACTCATTCACAACTTTCCTCCAC
Found at i:97929429 original size:30 final size:33
Alignment explanation
Indices: 97929327--97929430 Score: 97
Period size: 34 Copynumber: 3.2 Consensus size: 33
97929317 TAGACCCTGG
* * * * *
97929327 AGTAAACCATCAATCATTAACAACTTTCCTTCAG
1 AGTAAAACATCACTCATTCACAACGTTCC-TCAC
*
97929361 AGTAAAACATCACTCATTCACAACTTTCCTCCAC
1 AGTAAAACATCACTCATTCACAACGTTCCT-CAC
* *
97929395 AGTAAACCATTACTCATTCACAA-GTTCCT-A-
1 AGTAAAACATCACTCATTCACAACGTTCCTCAC
97929425 AGTAAA
1 AGTAAA
97929431 GCAGAACTGA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
30 6 0.10
31 1 0.02
33 6 0.10
34 49 0.79
ACGTcount: A:0.38, C:0.28, G:0.06, T:0.28
Consensus pattern (33 bp):
AGTAAAACATCACTCATTCACAACGTTCCTCAC
Found at i:97930156 original size:24 final size:25
Alignment explanation
Indices: 97930124--97930182 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 25
97930114 CACCGGCGAA
*
97930124 AAAGAGGGAGAAACGGA-GGATCCG
1 AAAGAGGGAGAAACCGAGGGATCCG
*
97930148 AAAGTGGGAGAAACCGAGGGATCCG
1 AAAGAGGGAGAAACCGAGGGATCCG
97930173 AACAGAGGGA
1 AA-AGAGGGA
97930183 TTCGGGTGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 15 0.50
25 9 0.30
26 6 0.20
ACGTcount: A:0.41, C:0.14, G:0.41, T:0.05
Consensus pattern (25 bp):
AAAGAGGGAGAAACCGAGGGATCCG
Found at i:97930525 original size:26 final size:25
Alignment explanation
Indices: 97930473--97930523 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
97930463 CATATCCAAG
*
97930473 TTAAAAAAATATAAATATATATAAA
1 TTAAAAAAATATAAATATAAATAAA
97930498 TTAAAAAATATATAAATTATAAATAA
1 TTAAAAAA-ATATAAA-TATAAATAA
97930524 TTTGTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.35
26 7 0.30
27 8 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
TTAAAAAAATATAAATATAAATAAA
Found at i:97932813 original size:20 final size:20
Alignment explanation
Indices: 97932777--97932832 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
97932767 GTATCCCTGA
* *
97932777 TTGCACAATCG-TGCCCCTGT
1 TTGCAC-ATCGATACCCCTAT
* *
97932797 TTTCACATCGGTACCCCTAT
1 TTGCACATCGATACCCCTAT
97932817 TTGCACATCGATACCC
1 TTGCACATCGATACCC
97932833 TTGACTGCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.20, C:0.36, G:0.14, T:0.30
Consensus pattern (20 bp):
TTGCACATCGATACCCCTAT
Found at i:97935765 original size:43 final size:43
Alignment explanation
Indices: 97935704--97935823 Score: 129
Period size: 42 Copynumber: 2.8 Consensus size: 43
97935694 TAACGCCAAC
* *
97935704 GTCCCAGACGTGGTCTTACATGTAATCACATATCGGTG-CCACT
1 GTCCCAGACATGGTCTTACATGTAATCACATATCGATGTCCA-T
* ** *
97935747 GTCCCAGACAAGGTCTTACATG-AA-CTTATATACGATGTCGAT
1 GTCCCAGACATGGTCTTACATGTAATCACATAT-CGATGTCCAT
*
97935789 GTCCCAGACATGGTCTTACACGTAAATCACATATC
1 GTCCCAGACATGGTCTTACATGT-AATCACATATC
97935824 AGAATCCTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
41 5 0.08
42 27 0.44
43 22 0.35
44 3 0.05
45 5 0.08
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAATCACATATCGATGTCCAT
Found at i:97938687 original size:17 final size:15
Alignment explanation
Indices: 97938640--97938687 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
97938630 AATATGTAAT
*
97938640 TATATAATAAAAATA
1 TATATATTAAAAATA
* *
97938655 TATATTTTACAAATA
1 TATATATTAAAAATA
97938670 TCATTATATTAAAAATA
1 T-A-TATATTAAAAATA
97938687 T
1 T
97938688 TTGAAATTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 13 0.50
16 1 0.04
17 12 0.46
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (15 bp):
TATATATTAAAAATA
Found at i:97944360 original size:22 final size:21
Alignment explanation
Indices: 97944293--97944385 Score: 54
Period size: 19 Copynumber: 4.4 Consensus size: 21
97944283 TAGTGAACAT
97944293 ATATATATAAAAC-ATATAATA
1 ATATATATAAAACTA-ATAATA
* * *
97944314 CTAGAT-TAAAA-AAATATATACA
1 ATATATATAAAACTAATA-AT--A
97944336 ATATATATTGAAAA-TAATAATA
1 ATATATA-T-AAAACTAATAATA
97944358 ATATA-A-AAAACTAATAATA
1 ATATATATAAAACTAATAATA
97944377 ATGATATAT
1 AT-ATATAT
97944386 GAATATATAC
Statistics
Matches: 56, Mismatches: 5, Indels: 21
0.68 0.06 0.26
Matches are distributed among these distances:
18 4 0.07
19 13 0.23
20 11 0.20
21 6 0.11
22 11 0.20
24 3 0.05
25 8 0.14
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.32
Consensus pattern (21 bp):
ATATATATAAAACTAATAATA
Found at i:97944506 original size:27 final size:26
Alignment explanation
Indices: 97944445--97944538 Score: 91
Period size: 27 Copynumber: 3.6 Consensus size: 26
97944435 AGGTATATAC
***
97944445 ATAGTATT-AAAAATGTGTACATAAT
1 ATAGTATTAAAAAATACATACATAAT
**
97944470 ATAGCGTTAAAAAATACATACATAAT
1 ATAGTATTAAAAAATACATACATAAT
* *
97944496 ATAGTTATTAAAAAATATATACATAAG
1 ATAG-TATTAAAAAATACATACATAAT
*
97944523 ATAATATGTAAAAAAT
1 ATAGTAT-TAAAAAAT
97944539 GTAATATAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
25 6 0.11
26 21 0.38
27 29 0.52
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (26 bp):
ATAGTATTAAAAAATACATACATAAT
Found at i:97944748 original size:23 final size:23
Alignment explanation
Indices: 97944701--97944844 Score: 86
Period size: 23 Copynumber: 6.3 Consensus size: 23
97944691 ATACTACATG
97944701 AATATATACATATATATATATTAAA
1 AATATATACATA-ATA-ATATTAAA
*
97944726 AATAAATACATAATAATATTAAA
1 AATATATACATAATAATATTAAA
* * *
97944749 AGTATGTACATAA-AATA-TATA
1 AATATATACATAATAATATTAAA
* * *
97944770 CATATGAT--ATAGT--TATTGAA
1 AATAT-ATACATAATAATATTAAA
* *
97944790 AATATGTACATAATACAT-GTAAA
1 AATATATACATAATA-ATATTAAA
97944813 AATATTATACATAATATAGTATTAAA
1 AATA-TATACATAATA-A-TATTAAA
*
97944839 AGTATA
1 AATATA
97944845 GTATTAAAAA
Statistics
Matches: 88, Mismatches: 20, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
19 3 0.03
20 9 0.10
21 10 0.11
22 5 0.06
23 25 0.28
24 15 0.17
25 14 0.16
26 7 0.08
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.35
Consensus pattern (23 bp):
AATATATACATAATAATATTAAA
Found at i:97944846 original size:14 final size:14
Alignment explanation
Indices: 97944827--97944853 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97944817 TTATACATAA
97944827 TATAGTATTAAAAG
1 TATAGTATTAAAAG
97944841 TATAGTATTAAAA
1 TATAGTATTAAAA
97944854 AAACATGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (14 bp):
TATAGTATTAAAAG
Found at i:97945058 original size:3 final size:3
Alignment explanation
Indices: 97945023--97945152 Score: 75
Period size: 3 Copynumber: 42.7 Consensus size: 3
97945013 TATATAAGTG
* * * * * * *
97945023 TAA TAA TAG TAA TTA TAA TAC TAA TAC TAA TAA TAA AAA TAA TAG TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
97945071 TAA AAA TAA AAA CAA TAA TAA TCA TAA AAA TAA T-A TAAA TAA TATG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA-A
* *
97945117 TACA TGAA AAA TAA TAA TAA T-A TAA TAA TGA TAA TA
1 TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
97945153 GAAAAACAAA
Statistics
Matches: 94, Mismatches: 28, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
2 4 0.04
3 83 0.88
4 6 0.06
5 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:97947041 original size:34 final size:33
Alignment explanation
Indices: 97946984--97947047 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
97946974 AAACTATAAG
* * * *
97946984 AAAAATTTAAATAAGTAATAAATATAAGAATTT
1 AAAAAATTAAATAAGGAAAAAATAAAAGAATTT
97947017 AAAAAATTAAATAAGGGAAAAAATAAAAGAA
1 AAAAAATTAAATAA-GGAAAAAATAAAAGAA
97947048 ATAATATATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 13 0.50
34 13 0.50
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.23
Consensus pattern (33 bp):
AAAAAATTAAATAAGGAAAAAATAAAAGAATTT
Found at i:97948936 original size:85 final size:85
Alignment explanation
Indices: 97948808--97949012 Score: 333
Period size: 85 Copynumber: 2.4 Consensus size: 85
97948798 ACGAAGATAA
* *
97948808 GATCTGT-AATTTTAACCTGTTACCCTATTGCTTAGGGGATTAAGGC-GAGTCTTCGACCTGCTC
1 GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGGCGGA-TCTTCGACCTGCTC
*
97948871 CACCACTGCTCGGAGAGCCAG
65 CACCACTGCTCGGAGAGCAAG
*
97948892 GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGATCTTCGACCTGCTCC
1 GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGGCGGATCTTCGACCTGCTCC
97948957 ACCACTGCTCGGAGAGCAAG
66 ACCACTGCTCGGAGAGCAAG
* *
97948977 GATCCGTAAATTTTAGCCTGTTACCCTACTGTTTAG
1 GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAG
97949013 TAAAGATAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
84 7 0.06
85 104 0.92
86 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.30
Consensus pattern (85 bp):
GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGGCGGATCTTCGACCTGCTCC
ACCACTGCTCGGAGAGCAAG
Found at i:97949597 original size:133 final size:133
Alignment explanation
Indices: 97949015--97950101 Score: 1519
Period size: 133 Copynumber: 8.1 Consensus size: 133
97949005 CTGTTTAGTA
* * *
97949015 AAGATAAAGCTGATGATTGGAATCTGCTCCATCACCGGTACGTGGAGATAAAATTCTCCAAAATT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
* ** *
97949080 CGATCTGCTTCACTCCTGCTCAATGAAGATAAGATCTGGTATATTTAGTCTGCTCCACTCCTGCT
66 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGG--TATTTAGCCTGCTCCACTCCTGCT
97949145 CAGTG
129 CAGTG
* * ** * * * * * * *
97949150 AAGATAAGGTTGGTGGCTGAAACCTGCTCCATTGTCGATACATGGAGATAAGATTCACCAAAATT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
* * * * *
97949215 TGATCTGCTCCGCTCCTACTCAGCAAAGATAAGACCTGGTATATTTAGCCTGCTCCACTCCTGCT
66 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGG--TATTTAGCCTGCTCCACTCCTGCT
97949280 CAGTG
129 CAGTG
** * * *
97949285 AAGATAAATCTGATGATTGGAATCTGCTCCATCGCCGGTACGTAGAGGTAAGATTTTCCAAAATT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
* ** *
97949350 CGATCTGCTTCACTCCTGCTCAATGAAGATAAGATCTGGTATATTTAGCCTGCTCCACTCCTGCA
66 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGG--TATTTAGCCTGCTCCACTCCTGCT
97949415 CAGTG
129 CAGTG
* *
97949420 AAGATAAGGTTGATGATTGGAATCTGCTCCATTGCCGGTACGTGGAGATAAGATTCTCCAAAATT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
* * *
97949485 CGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCTTGCTCA
66 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTGCTCA
97949550 GTG
131 GTG
* * *
97949553 AAGATAAGGCTGATGATTGGAATCTGCTCTATCACCGGTACGTGGAGATAAGATTCACCAAAATT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
* * * *
97949618 TGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTACTCA
66 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTGCTCA
97949683 GTG
131 GTG
* ** *
97949686 AAGATAAGGCTGATGATTGGAATCTGCTCCATTGCCAATACATGGAGATAAGATTCAT-CAAAAT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTC-TCCAAAAT
** * *
97949750 TTGATCTGCTTTGCTCCTGCTCAGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTCCTGCTC
65 TTGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTGCTC
97949815 AGTG
130 AGTG
* * * * * * *
97949819 AAGATAAGGCTGGTGGTTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCAAAATT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
* * * *
97949884 TGATCTGCTCCACTCTTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCCCCACTCCTGCTCA
66 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTGCTCA
97949949 GTG
131 GTG
97949952 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
1 AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
* *
97950017 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGGTATTTAGCCTGGTCCACTCCTACTCA
66 TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTGCTCA
97950082 GTG
131 GTG
97950085 AAGATAAGGCTGATGAT
1 AAGATAAGGCTGATGAT
97950102 ATCTGTAATC
Statistics
Matches: 843, Mismatches: 107, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
133 525 0.62
135 318 0.38
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (133 bp):
AAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCTCCAAAATT
TGATCTGCTTCACTCCTGCTCAGCGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTGCTCA
GTG
Found at i:97957942 original size:24 final size:24
Alignment explanation
Indices: 97957911--97957963 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
97957901 CTTAGCCAAC
97957911 TGCTCTTGCATCTGAGCCTGCAGT
1 TGCTCTTGCATCTGAGCCTGCAGT
97957935 TGCTCTTGCATCTGAGCCTGCAGT
1 TGCTCTTGCATCTGAGCCTGCAGT
97957959 TGCTC
1 TGCTC
97957964 AAACCTCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.11, C:0.30, G:0.25, T:0.34
Consensus pattern (24 bp):
TGCTCTTGCATCTGAGCCTGCAGT
Found at i:97957972 original size:24 final size:24
Alignment explanation
Indices: 97957919--97957973 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
97957909 ACTGCTCTTG
***
97957919 CATCTGAGCCTGCAGTTGCTCTTG
1 CATCTGAGCCTGCAGTTGCTCAAA
97957943 CATCTGAGCCTGCAGTTGCTCAAA
1 CATCTGAGCCTGCAGTTGCTCAAA
*
97957967 CCTCTGA
1 CATCTGA
97957974 TCCATATCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.18, C:0.31, G:0.22, T:0.29
Consensus pattern (24 bp):
CATCTGAGCCTGCAGTTGCTCAAA
Found at i:97976693 original size:29 final size:27
Alignment explanation
Indices: 97976656--97976710 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
97976646 CAGTTATATA
97976656 CAGTCTGGGGCCTGAACCCATTATAGATT
1 CAGTCT-GGGCCTGAACCCATT-TAGATT
* * *
97976685 CAGTTTGGGCCTTAGCCCATTTAGAT
1 CAGTCTGGGCCTGAACCCATTTAGAT
97976711 ATAGCCTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 5 0.22
28 13 0.57
29 5 0.22
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (27 bp):
CAGTCTGGGCCTGAACCCATTTAGATT
Found at i:97977232 original size:18 final size:18
Alignment explanation
Indices: 97977193--97977226 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97977183 CATGTGGCCT
*
97977193 GCCCGTGTGGGCCCACAC
1 GCCCGTGTGAGCCCACAC
97977211 GCCCGTGT-AGCCCACA
1 GCCCGTGTGAGCCCACA
97977227 TGGCCCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (18 bp):
GCCCGTGTGAGCCCACAC
Found at i:97983122 original size:25 final size:26
Alignment explanation
Indices: 97983094--97983148 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
97983084 TTATTAAATT
*
97983094 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
97983119 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
97983144 A-ATAT
1 ATATAT
97983149 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:97983335 original size:44 final size:45
Alignment explanation
Indices: 97983286--97983380 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
97983276 TTACACCTCT
* *
97983286 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
97983330 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
97983375 ATTACA
1 ATTACA
97983381 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:97983380 original size:16 final size:16
Alignment explanation
Indices: 97983361--97983428 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
97983351 GATTTGCTAT
* *
97983361 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
97983377 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97983393 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97983409 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97983425 TACA
1 TACA
97983429 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:97993484 original size:14 final size:14
Alignment explanation
Indices: 97993465--97993491 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97993455 CATCTTATTT
97993465 TAAAACTATAAAAC
1 TAAAACTATAAAAC
97993479 TAAAACTATAAAA
1 TAAAACTATAAAA
97993492 ACTTAGAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAACTATAAAAC
Found at i:97994640 original size:22 final size:21
Alignment explanation
Indices: 97994615--97994677 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
97994605 AATACTACAT
97994615 AAATATGTACATATATATATTA
1 AAATATGTACATA-ATATATTA
**
97994637 AAATAAATACATAATAATATTA
1 AAATATGTACATAAT-ATATTA
*
97994659 AGAGTATGTACATAATATA
1 A-AATATGTACATAATATA
97994678 GTGTTAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.06
22 21 0.62
23 11 0.32
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (21 bp):
AAATATGTACATAATATATTA
Found at i:97994786 original size:21 final size:22
Alignment explanation
Indices: 97994757--97994798 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
97994747 TTATTAATAG
97994757 TAAAC-ATATACATATATAAAT
1 TAAACAATATACATATATAAAT
*
97994778 TAAAGATATATACATATATAA
1 TAAACA-ATATACATATATAA
97994799 TAGAACACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
23 14 0.78
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (22 bp):
TAAACAATATACATATATAAAT
Found at i:97994842 original size:3 final size:3
Alignment explanation
Indices: 97994836--97994864 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
97994826 CAACAACAAC
97994836 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97994865 AAGTATGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:97994991 original size:20 final size:18
Alignment explanation
Indices: 97994925--97994983 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
97994915 GATAATAGTG
*
97994925 AAAATAATAGGTATA-ATA
1 AAAATAATA-TTATATATA
*
97994943 ATAAAT-ATAATGATATATA
1 A-AAATAAT-ATTATATATA
*
97994962 AAGATAATATTATATATA
1 AAAATAATATTATATATA
97994980 AAAA
1 AAAA
97994984 GTATATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (18 bp):
AAAATAATATTATATATA
Found at i:97999018 original size:23 final size:23
Alignment explanation
Indices: 97998992--97999040 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
97998982 TTTAAAGGTT
97998992 TATTCTAATTTTAGATTATGGAC
1 TATTCTAATTTTAGATTATGGAC
97999015 TATTCTAATTTTAGATTATGGAC
1 TATTCTAATTTTAGATTATGGAC
97999038 TAT
1 TAT
97999041 CTTTGGGTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.49
Consensus pattern (23 bp):
TATTCTAATTTTAGATTATGGAC
Found at i:97999282 original size:26 final size:25
Alignment explanation
Indices: 97999243--97999292 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
97999233 TTAAAGTGTA
97999243 AAAAAAACCTAAAAATCGTCACTTT
1 AAAAAAACCTAAAAATCGTCACTTT
97999268 AAAAAAACCTAAAAATCGTCACTTT
1 AAAAAAACCTAAAAATCGTCACTTT
97999293 CAACTGTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.20, G:0.04, T:0.24
Consensus pattern (25 bp):
AAAAAAACCTAAAAATCGTCACTTT
Found at i:97999659 original size:28 final size:28
Alignment explanation
Indices: 97999601--97999660 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
97999591 CTAGCATGAT
* *
97999601 TTTAGCTTCTAATTTTTAGAACACAAAA
1 TTTAGCTTCTAATTCTTAGAAAACAAAA
* *
97999629 TTTAGCTTCTAATTACTT-GAAAATAAGA
1 TTTAGCTTCTAATT-CTTAGAAAACAAAA
97999657 TTTA
1 TTTA
97999661 TATATTTTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 25 0.93
29 2 0.07
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (28 bp):
TTTAGCTTCTAATTCTTAGAAAACAAAA
Found at i:97999901 original size:16 final size:16
Alignment explanation
Indices: 97999880--97999920 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
97999870 TTCATGCCTT
*
97999880 TTTTTATTTTTTTTAA
1 TTTTTATTTTTTTAAA
*
97999896 TTTTTATATTTTTAAA
1 TTTTTATTTTTTTAAA
97999912 TTATTTATT
1 TT-TTTATT
97999921 AATTTAGCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTTTTAAA
Found at i:98000273 original size:63 final size:64
Alignment explanation
Indices: 98000175--98000371 Score: 263
Period size: 64 Copynumber: 3.1 Consensus size: 64
98000165 ACATGGAACT
* * **
98000175 ATATAGCAAATTAAGACGTCAGGTTGTTACTTGGAAGTACATAAAACAAATTAATAATTAATAA
1 ATATAGCAAAGTAAGACGTCAGGTTGATAGGTGGAAGTACATAAAACAAATTAATAATTAATAA
** * * *
98000239 ATAT-GGGAAGCTAAGAGGT-AGGTTGATAGGTGGAAGCACATAAAACTAATTAATAATTAATAA
1 ATATAGCAAAG-TAAGACGTCAGGTTGATAGGTGGAAGTACATAAAACAAATTAATAATTAATAA
* * *
98000302 ATATAGCAAAGTAGGACGTCAGGTTGGTAGGTGGAAGTACATAAAATAAATTAATAATTAATAA
1 ATATAGCAAAGTAAGACGTCAGGTTGATAGGTGGAAGTACATAAAACAAATTAATAATTAATAA
98000366 ATATAG
1 ATATAG
98000372 TAATAAGGAG
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
63 52 0.46
64 61 0.54
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.27
Consensus pattern (64 bp):
ATATAGCAAAGTAAGACGTCAGGTTGATAGGTGGAAGTACATAAAACAAATTAATAATTAATAA
Found at i:98001257 original size:21 final size:22
Alignment explanation
Indices: 98001226--98001266 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
98001216 TCGAGCCAAT
98001226 AACCCTAAATCATAAACCTTAA
1 AACCCTAAATCATAAACCTTAA
* *
98001248 AACCC-AAATCCTGAACCTT
1 AACCCTAAATCATAAACCTT
98001267 GAGATTCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.44, C:0.32, G:0.02, T:0.22
Consensus pattern (22 bp):
AACCCTAAATCATAAACCTTAA
Found at i:98001302 original size:13 final size:13
Alignment explanation
Indices: 98001265--98001308 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
98001255 ATCCTGAACC
98001265 TTGAGATTCAAGGT
1 TTGAG-TTCAAGGT
*
98001279 TTAATGTTCAAGGT
1 TTGA-GTTCAAGGT
*
98001293 TTGAGTTCAAGAT
1 TTGAGTTCAAGGT
98001306 TTG
1 TTG
98001309 GGGTTCGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 11 0.42
14 14 0.54
15 1 0.04
ACGTcount: A:0.27, C:0.07, G:0.25, T:0.41
Consensus pattern (13 bp):
TTGAGTTCAAGGT
Found at i:98011594 original size:13 final size:13
Alignment explanation
Indices: 98011576--98011628 Score: 88
Period size: 13 Copynumber: 4.1 Consensus size: 13
98011566 GCTCGGCAGG
98011576 GACACGCCCGTGT
1 GACACGCCCGTGT
98011589 GACACGCCCGTGT
1 GACACGCCCGTGT
*
98011602 GACACGCTCGTGT
1 GACACGCCCGTGT
*
98011615 GACACGCCTGTGT
1 GACACGCCCGTGT
98011628 G
1 G
98011629 CGATTATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.15, C:0.34, G:0.32, T:0.19
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:98019730 original size:44 final size:44
Alignment explanation
Indices: 98019681--98019765 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
98019671 AAAAAAAAGA
98019681 AAAAAGGAATCAAGGTGAAAACCCAAAAAGGGCATCTTGATAAT
1 AAAAAGGAATCAAGGTGAAAACCCAAAAAGGGCATCTTGATAAT
* * *
98019725 AAAAAGGGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGAT
1 AAAAAGGAATCAAGGTGAAAACCCAAAAAGGGCATCTTGAT
98019766 TAACACAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.46, C:0.14, G:0.25, T:0.15
Consensus pattern (44 bp):
AAAAAGGAATCAAGGTGAAAACCCAAAAAGGGCATCTTGATAAT
Found at i:98019788 original size:44 final size:43
Alignment explanation
Indices: 98019681--98019802 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 43
98019671 AAAAAAAAGA
* * *
98019681 AAAAAGGAATCAAGGTGAAAACCCAAAAAGGGCATCTTGATAAT
1 AAAAAGG-ATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATAAC
98019725 AAAAAGGGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAAC
1 AAAAA-GGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGA-TAAC
* *
98019770 ACAAAA-GAT-TAGGATGAAAACCTG-AAAGGGCGT
1 A-AAAAGGATCAAGG-TGAAAACCCGAAAAGGGCGT
98019803 TCTAATGAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
43 12 0.17
44 47 0.68
45 6 0.09
46 4 0.06
ACGTcount: A:0.46, C:0.14, G:0.25, T:0.16
Consensus pattern (43 bp):
AAAAAGGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATAAC
Found at i:98020751 original size:75 final size:74
Alignment explanation
Indices: 98020592--98020946 Score: 410
Period size: 70 Copynumber: 4.9 Consensus size: 74
98020582 ATTTTTGTTT
* * * *
98020592 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACA--TTGAGGTATTTTCAA
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGGTACACGCTGAGGTATTTTCAA
98020655 TTTCTATCTT-
65 TTTCTAT-TTG
* *
98020665 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGTAATTTCAA
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGT-ACACGCTGAGGTATTTTCAA
98020730 TTTCTATTTG
65 TTTCTATTTG
* * ** *
98020740 TCAAAAATCAACTCATATTACAAGAAGTGAGTTGAGCCT-A---ATGCGCTGAGGTGTTTTCAAT
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAAT
* *
98020801 TTTTGTTTG
66 TTCTATTTG
* * * *
98020810 TCAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCACGT----GTTGAGGTGTTTTCAAT
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAAT
**
98020871 TTCTGCTTG
66 TTCTATTTG
* *
98020880 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG-ACACGCTGAGGTATTTTCAAT
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAAT
98020944 TTC
66 TTC
98020947 CTTTTTTTTT
Statistics
Matches: 243, Mismatches: 27, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
70 122 0.50
71 1 0.00
72 3 0.01
73 58 0.24
74 3 0.01
75 56 0.23
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (74 bp):
TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAAT
TTCTATTTG
Found at i:98020917 original size:140 final size:142
Alignment explanation
Indices: 98020592--98020946 Score: 428
Period size: 145 Copynumber: 2.5 Consensus size: 142
98020582 ATTTTTGTTT
* * **
98020592 TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACATTGAGGTATTTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT--AGATACGCTGAGGTATTTTCAATT
* *
98020657 TCTATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAGGT
64 TCTATCTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCACGT----CGCTGAGGT
*
98020722 AATTTCAATTTCTATTTG
125 AATTTCAATTTCTACTTG
* * * * *
98020740 TCAAAAATCAACTCATATTACAAGAAGTGAGTTGAGCCTA-ATGCGCTGAGGTGTTTTCAATTTT
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGATACGCTGAGGTATTTTCAATTTC
* * * **
98020804 TGT-TTGTCAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCACGT-GTTGAGGTGTTTT
66 TATCTT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCACGTCGCTGAGGTAATTT
*
98020867 CAATTTCTGCTTG
130 CAATTTCTACTTG
* *
98020880 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTATTTTCAATT
1 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC-TA-GATACGCTGAGGTATTTTCAATT
98020945 TC
64 TC
98020947 CTTTTTTTTT
Statistics
Matches: 178, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
140 56 0.31
141 2 0.01
143 20 0.11
144 2 0.01
145 62 0.35
146 1 0.01
148 35 0.20
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (142 bp):
TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGATACGCTGAGGTATTTTCAATTTC
TATCTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCACGTCGCTGAGGTAATTTC
AATTTCTACTTG
Found at i:98021117 original size:87 final size:92
Alignment explanation
Indices: 98020880--98021117 Score: 280
Period size: 87 Copynumber: 2.7 Consensus size: 92
98020870 TTTCTGCTTG
*
98020880 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG-ACA--CGCTGAGGTATTTTCA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCACATGTGCTGAGGTATTTTCA
** ** * *
98020942 ATTTCCTTTTTTTTTCAATTTATATTTT
66 AAATCC-TTGCTTTTCAAATTATATGTT
*
98020970 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGT-C-GAGGTATTTTC
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG-CACATGTGCTGAGGTATTTTC
98021033 AAAAT-C-TGCTTTTCAAATTA-A-GTT
65 AAAATCCTTGCTTTTCAAATTATATGTT
* * * *
98021057 TCAAAAACCAACTCATATTGCGAAAGGTGAGTTGAGCCTT-GGCTCATGTGCTGAGCTATTT
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCACATGTGCTGAGGTATTT
98021118 CCAATTTCAG
Statistics
Matches: 130, Mismatches: 12, Indels: 15
0.83 0.08 0.10
Matches are distributed among these distances:
85 6 0.05
86 3 0.02
87 48 0.37
88 1 0.01
89 11 0.08
90 42 0.32
91 1 0.01
92 17 0.13
93 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (92 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCACATGTGCTGAGGTATTTTCA
AAATCCTTGCTTTTCAAATTATATGTT
Found at i:98023044 original size:46 final size:46
Alignment explanation
Indices: 98022979--98023434 Score: 713
Period size: 46 Copynumber: 10.0 Consensus size: 46
98022969 TTATCTTTGA
* * * * * * *
98022979 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-ATTTCATAT
98023025 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
98023071 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
98023117 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
98023163 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATC-C-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-CACATTTCATAT
* *
98023208 CATGTTGCCATGGTATCTTTGAACCATGGTCTTGCACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
98023254 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * ** *
98023300 TAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
98023345 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
98023391 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
98023435 TTTAGAGAGC
Statistics
Matches: 379, Mismatches: 26, Indels: 10
0.91 0.06 0.02
Matches are distributed among these distances:
44 1 0.00
45 84 0.22
46 293 0.77
47 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:98023216 original size:183 final size:183
Alignment explanation
Indices: 98022979--98023434 Score: 738
Period size: 183 Copynumber: 2.5 Consensus size: 183
98022969 TTATCTTTGA
* * * * **
98022979 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTC-TGTCATGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TCACTTTCATGTCATGTTGCCATGGTATCT
98023043 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
65 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
98023108 ATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
130 ATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-TTTCATAT
98023163 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATC-CTTTCATGTCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATCACTTTCATGTCATGTTGCCATGGTATCTT
* *
98023227 TGAACCATGGTCTTGCACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
* ** *
98023292 TTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGT
131 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTTTCATAT
* *
98023345 CACGTTGCCATGGTATCTTTCAACCATGGTCTTA-CACATTTCATATCATGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATCAC-TTTCATGTCATGTTGCCATGGTATCT
98023409 TTCAACCATGGTCTTACACATTTCAT
65 TTCAACCATGGTCTTACACATTTCAT
98023435 TTTAGAGAGC
Statistics
Matches: 254, Mismatches: 15, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
181 1 0.00
182 45 0.18
183 178 0.70
184 30 0.12
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (183 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATCACTTTCATGTCATGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTTTCATAT
Found at i:98023263 original size:137 final size:137
Alignment explanation
Indices: 98022979--98023434 Score: 736
Period size: 137 Copynumber: 3.3 Consensus size: 137
98022969 TTATCTTTGA
* * * * * * *
98022979 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTC-TGTCATGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC-ATTTCATATCATGTTGCCATGGTATCT
*
98023043 TTCAACCATGGTCTTA-CACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
65 TTCAACCATGGTCTTATC-C-TTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
98023107 CATTTCATAT
128 CATTTCATAT
*
98023117 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
* *
98023182 TCAACCATGGTCTTATCCTTTCATGTCATGTTGCCATGGTATCTTTGAACCATGGTCTTGCACAT
66 TCAACCATGGTCTTATCCTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
98023247 TTCATAT
131 TTCATAT
* *
98023254 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
* *
98023319 TCAACCATGGTCTTATTCTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
66 TCAACCATGGTCTTATCCTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
98023384 TTCATAT
131 TTCATAT
98023391 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
98023435 TTTAGAGAGC
Statistics
Matches: 298, Mismatches: 18, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
137 229 0.77
138 68 0.23
139 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (137 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTATCCTTTCATGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
TTCATAT
Found at i:98025593 original size:11 final size:11
Alignment explanation
Indices: 98025579--98025619 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
98025569 ACTAAATAAT
98025579 TAATAAAAAAA
1 TAATAAAAAAA
**
98025590 TAATAATGAAA
1 TAATAAAAAAA
*
98025601 TAATAATAAAA
1 TAATAAAAAAA
98025612 TAATAAAA
1 TAATAAAA
98025620 TATCTCATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (11 bp):
TAATAAAAAAA
Found at i:98025644 original size:20 final size:21
Alignment explanation
Indices: 98025591--98025666 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 21
98025581 ATAAAAAAAT
* *
98025591 AATAATGAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
98025610 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
98025631 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
98025652 TAATCATAAAATATC
1 -AATAATAAAATATC
98025667 ATCAACATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.24
20 12 0.27
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:98026195 original size:12 final size:12
Alignment explanation
Indices: 98026178--98026204 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
98026168 CTGTTTGTTT
98026178 AAACAAAGAATA
1 AAACAAAGAATA
98026190 AAACAAAGAATA
1 AAACAAAGAATA
98026202 AAA
1 AAA
98026205 AAATAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (12 bp):
AAACAAAGAATA
Found at i:98027363 original size:3 final size:3
Alignment explanation
Indices: 98027355--98027438 Score: 159
Period size: 3 Copynumber: 28.0 Consensus size: 3
98027345 GGTGTACATA
*
98027355 CTT CTT CTT CTT CTT CTT CTT CTT CTT TTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
98027403 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
98027439 ATTATTATTA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Found at i:98027508 original size:21 final size:21
Alignment explanation
Indices: 98027474--98027514 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
98027464 TGTGTTCTAT
*
98027474 TATATATGTATATATCTTTAA
1 TATATATATATATATCTTTAA
* *
98027495 TATATATATGTATATGTTTA
1 TATATATATATATATCTTTA
98027515 CTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (21 bp):
TATATATATATATATCTTTAA
Found at i:98027630 original size:23 final size:21
Alignment explanation
Indices: 98027598--98027656 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 21
98027588 TTTTTAACAC
98027598 TATATTATGTACATACTCTTAA
1 TATATTATGTACATA-TCTTAA
** *
98027620 TATTATTATGTATTTATTTTAA
1 TA-TATTATGTACATATCTTAA
98027642 TATA-TATGTACATAT
1 TATATTATGTACATAT
98027657 TTATGTAGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 9 0.29
21 2 0.06
22 9 0.29
23 11 0.35
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.53
Consensus pattern (21 bp):
TATATTATGTACATATCTTAA
Found at i:98027657 original size:20 final size:21
Alignment explanation
Indices: 98027598--98027658 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
98027588 TTTTTAACAC
*
98027598 TATATTATGTACATACTCTTAA
1 TATATTATGTACATA-TTTTAA
**
98027620 TATTATTATGTATTTATTTTAA
1 TA-TATTATGTACATATTTTAA
98027642 TATA-TATGTACATATTT
1 TATATTATGTACATATTT
98027659 ATGTAGTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 11 0.33
21 2 0.06
22 9 0.27
23 11 0.33
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (21 bp):
TATATTATGTACATATTTTAA
Found at i:98027951 original size:21 final size:21
Alignment explanation
Indices: 98027927--98027997 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
98027917 TTATTTCGCA
98027927 TTTAATATTATTGTTATCATG
1 TTTAATATTATTGTTATCATG
* ** **
98027948 TTTAATATCGCATACTTCGCA--
1 TTTAATAT--TATTGTTATCATG
98027969 TTTAATATTATTGTTATCATG
1 TTTAATATTATTGTTATCATG
98027990 TTTAATAT
1 TTTAATAT
98027998 CGCATACGTT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
19 6 0.17
21 24 0.67
23 6 0.17
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (21 bp):
TTTAATATTATTGTTATCATG
Found at i:98027969 original size:42 final size:42
Alignment explanation
Indices: 98027921--98028004 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
98027911 TCATCCTTAT
98027921 TTCGCATTTAATATTATTGTTATCATGTTTAATATCGCATAC
1 TTCGCATTTAATATTATTGTTATCATGTTTAATATCGCATAC
98027963 TTCGCATTTAATATTATTGTTATCATGTTTAATATCGCATAC
1 TTCGCATTTAATATTATTGTTATCATGTTTAATATCGCATAC
98028005 GTTGTTATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.48
Consensus pattern (42 bp):
TTCGCATTTAATATTATTGTTATCATGTTTAATATCGCATAC
Found at i:98030470 original size:18 final size:19
Alignment explanation
Indices: 98030442--98030477 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
98030432 ATTTCCTTTA
98030442 TATTAGAAATTTTTAAATT
1 TATTAGAAATTTTTAAATT
98030461 TATTAG-AATTTTTAAAT
1 TATTAGAAATTTTTAAAT
98030478 AATATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
TATTAGAAATTTTTAAATT
Found at i:98030536 original size:20 final size:18
Alignment explanation
Indices: 98030494--98030536 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
98030484 AATTTGGAAT
*
98030494 TTTTTATAAATATTTTAA
1 TTTTTAAAAATATTTTAA
*
98030512 ATTTTAAAAATTACTTTTAA
1 TTTTTAAAAA-TA-TTTTAA
98030532 TTTTT
1 TTTTT
98030537 TAAATTTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 8 0.40
19 2 0.10
20 10 0.50
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTAAAAATATTTTAA
Found at i:98030541 original size:19 final size:19
Alignment explanation
Indices: 98030491--98030542 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
98030481 ATAAATTTGG
*
98030491 AATTTTTTATAAATATTTTA
1 AATTTTTTA-AATTATTTTA
**
98030511 AATTTTAAAAATTACTTTT-
1 AATTTTTTAAATTA-TTTTA
98030530 AATTTTTTAAATT
1 AATTTTTTAAATT
98030543 TTTGTTGAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
AATTTTTTAAATTATTTTA
Found at i:98031254 original size:87 final size:85
Alignment explanation
Indices: 98031107--98031277 Score: 218
Period size: 87 Copynumber: 2.0 Consensus size: 85
98031097 AAATCTCTCC
* * * * *
98031107 TCTTTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGTATTAAAAAGGCCCTCAAATTT
1 TCTTTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAGACACTCAAAATT
*
98031172 CTTTAAAAAAAAGCAGTTAAGT
66 -TTT-AAAAAAAGCAATTAAGT
* * *
98031194 TCTTTTTTTTTTCACTCAATTG-GATACTTGAACTTTTAAAATGCATCAAAAATACACTCAAAAT
1 TCTTTTTTTTTTCACTCAATTGAG-CACTTGAACTTTCAAAATGCATCAAAAAGACACTCAAAAT
*
98031258 TTTTCAAAAAAGCAATTAAG
65 TTTTAAAAAAAGCAATTAAG
98031278 GCCATGCTCT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 14 0.19
86 4 0.05
87 55 0.75
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (85 bp):
TCTTTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAGACACTCAAAATT
TTTAAAAAAAGCAATTAAGT
Found at i:98031319 original size:19 final size:19
Alignment explanation
Indices: 98031297--98031355 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
98031287 TTATTAAAAA
98031297 TTAGAAAAATAAATAAATT
1 TTAGAAAAATAAATAAATT
* * *
98031316 TTAGATAAATTATTAAATT
1 TTAGAAAAATAAATAAATT
* *
98031335 TTAATAAAAATATA-AAATT
1 TT-AGAAAAATAAATAAATT
98031354 TT
1 TT
98031356 CAAATTTATT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
19 25 0.81
20 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
TTAGAAAAATAAATAAATT
Found at i:98031329 original size:38 final size:35
Alignment explanation
Indices: 98031287--98031377 Score: 92
Period size: 38 Copynumber: 2.5 Consensus size: 35
98031277 GGCCATGCTC
*
98031287 TTATTAAAAATTAGAAAAATAAATAAATTTTAGATAAA
1 TTATTAAAAATTAGAAAAATAAA-AAATTTT-CA-AAA
** * * *
98031325 TTATTAAATTTTAATAAAAATATAAAATTTTCAAAT
1 TTATTAAAAATT-AGAAAAATAAAAAATTTTCAAAA
98031361 TTATTAAAAATTAGAAA
1 TTATTAAAAATTAGAAA
98031378 TTTTTTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
35 4 0.09
36 12 0.28
37 1 0.02
38 17 0.40
39 9 0.21
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.38
Consensus pattern (35 bp):
TTATTAAAAATTAGAAAAATAAAAAATTTTCAAAA
Found at i:98031704 original size:8 final size:8
Alignment explanation
Indices: 98031691--98031768 Score: 57
Period size: 8 Copynumber: 8.8 Consensus size: 8
98031681 GACTTTATAA
98031691 AATTTTAT
1 AATTTTAT
*
98031699 AATTTTTT
1 AATTTTAT
98031707 ATATTTCTAT
1 A-ATTT-TAT
98031717 ATATTTTAT
1 A-ATTTTAT
98031726 AATTCATTAT
1 AATT--TTAT
98031736 AATTTTTAT
1 AA-TTTTAT
*
98031745 AAAATTTTAC
1 --AATTTTAT
*
98031755 AATTTTAC
1 AATTTTAT
98031763 AATTTT
1 AATTTT
98031769 TATGATTTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
8 25 0.42
9 12 0.20
10 19 0.32
11 4 0.07
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (8 bp):
AATTTTAT
Found at i:98031706 original size:10 final size:10
Alignment explanation
Indices: 98031693--98031799 Score: 66
Period size: 10 Copynumber: 11.3 Consensus size: 10
98031683 CTTTATAAAA
98031693 TTTTATAATT
1 TTTTATAATT
98031703 TTTTAT-A-T
1 TTTTATAATT
* *
98031711 TTCTAT-ATA
1 TTTTATAATT
98031720 TTTTATAATT
1 TTTTATAATT
**
98031730 CATTATAA-T
1 TTTTATAATT
**
98031739 TTTTATAAAA
1 TTTTATAATT
*
98031749 TTTTACAA--
1 TTTTATAATT
*
98031757 TTTTACAA-T
1 TTTTATAATT
*
98031766 TTTTATGATT
1 TTTTATAATT
98031776 TTTTATATATT
1 TTTTATA-ATT
*
98031787 TTTTTTAATT
1 TTTTATAATT
98031797 TTT
1 TTT
98031800 AATATTTGAA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
8 15 0.19
9 19 0.25
10 34 0.44
11 9 0.12
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:98031735 original size:27 final size:28
Alignment explanation
Indices: 98031692--98031745 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
98031682 ACTTTATAAA
**
98031692 ATTTTATAATTTTTTAT-ATTTCTATAT
1 ATTTTATAATTCATTATAATTTCTATAT
*
98031719 ATTTTATAATTCATTATAATTTTTATA
1 ATTTTATAATTCATTATAATTTCTATA
98031746 AAATTTTACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (28 bp):
ATTTTATAATTCATTATAATTTCTATAT
Found at i:98031736 original size:17 final size:19
Alignment explanation
Indices: 98031696--98031746 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 19
98031686 TATAAAATTT
*
98031696 TATAATTTTTTATATTTCTA
1 TATAA-TTTTTATAATTCTA
98031716 TAT-A-TTTTATAATTC-A
1 TATAATTTTTATAATTCTA
98031732 TTATAATTTTTATAA
1 -TATAATTTTTATAA
98031747 AATTTTACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
16 1 0.04
17 13 0.48
18 1 0.04
19 9 0.33
20 3 0.11
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (19 bp):
TATAATTTTTATAATTCTA
Found at i:98031780 original size:56 final size:57
Alignment explanation
Indices: 98031684--98031800 Score: 139
Period size: 56 Copynumber: 2.1 Consensus size: 57
98031674 TTCTTACGAC
* **
98031684 TTTATAAAATTTTATAATTTTTTATATTTCTATATATTTTATA-ATTCATTATAATT
1 TTTATAAAATTTTACAATTTTACATATTTCTATATATTTTATATATTCATTATAATT
* * ** *
98031740 TTTATAAAATTTTACAATTTTACA-ATTTTTATGATTTTTTATATATTTTTTTTAATT
1 TTTATAAAATTTTACAATTTTACATATTTCTAT-ATATTTTATATATTCATTATAATT
98031797 TTTA
1 TTTA
98031801 ATATTTGAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
55 7 0.14
56 30 0.59
57 14 0.27
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (57 bp):
TTTATAAAATTTTACAATTTTACATATTTCTATATATTTTATATATTCATTATAATT
Found at i:98035349 original size:134 final size:133
Alignment explanation
Indices: 98035091--98035362 Score: 400
Period size: 137 Copynumber: 2.0 Consensus size: 133
98035081 TTGGTGACTA
* * *
98035091 TGCTTTAAAGGTGTCATGTTGTTTCTAATGTAACTTCTAGACTTACATGGTAGTGCCTTAAGGAT
1 TGCTTGAAAGGTGTCATCTTGTTTCTAATGTAACTTCTAGACTTACATAGTAGTGCCTTAAGGAT
* * *
98035156 TTCTCTCACTTAATTTGGATATGTCCAATAACTATCGGAACTCCAAATAAATTAATAATAATTAG
66 TTCTCTCACTTAATTTGAATATGTCCAATAACAATAGGAACTCCAAATAAATT-ATAATAATTAG
98035221 AGAT
130 AGAT
* * *
98035225 TGCTTGAAAGGTGTCATCTTTTTTCTAATGTAATTTCTAGACTTATATAGTAGTGCCTTAAGGAT
1 TGCTTGAAAGGTGTCATCTTGTTTCTAATGTAACTTCTAGACTTACATAGTAGTGCCTTAAGGA-
* *
98035290 TTTCCCTTTCACTTAATTTGAATATGTCCAATAACAATAGGAACTCCAAATAATTTAATAATAAT
65 TTT--CTCTCACTTAATTTGAATATGTCCAATAACAATAGGAACTCCAAATAAATT-ATAATAAT
98035355 TAGAGAT
127 TAGAGAT
98035362 T
1 T
98035363 TTATCTTTTG
Statistics
Matches: 124, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
134 58 0.47
135 3 0.02
137 63 0.51
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (133 bp):
TGCTTGAAAGGTGTCATCTTGTTTCTAATGTAACTTCTAGACTTACATAGTAGTGCCTTAAGGAT
TTCTCTCACTTAATTTGAATATGTCCAATAACAATAGGAACTCCAAATAAATTATAATAATTAGA
GAT
Found at i:98037204 original size:17 final size:17
Alignment explanation
Indices: 98037182--98037269 Score: 62
Period size: 17 Copynumber: 5.4 Consensus size: 17
98037172 AGCTCGAAGA
98037182 TGAGCTCTCATTCTTGG
1 TGAGCTCTCATTCTTGG
* * *
98037199 TGAGCTCGCAATGTTGG
1 TGAGCTCTCATTCTTGG
* *
98037216 TGAGCTCGCGA-TCTTGA
1 TGAGCTCTC-ATTCTTGG
98037233 TGAG--CT-ATTC-TGG
1 TGAGCTCTCATTCTTGG
*
98037246 TGAGCT-TGCAGTCTTGG
1 TGAGCTCT-CATTCTTGG
98037263 TGAGCTC
1 TGAGCTC
98037270 ACACATTCGG
Statistics
Matches: 55, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
13 7 0.13
14 3 0.05
15 1 0.02
16 3 0.05
17 40 0.73
18 1 0.02
ACGTcount: A:0.15, C:0.20, G:0.31, T:0.34
Consensus pattern (17 bp):
TGAGCTCTCATTCTTGG
Found at i:98045265 original size:14 final size:16
Alignment explanation
Indices: 98045240--98045272 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
98045230 AAGAATAAGA
98045240 AAAGTACAATAAT-GG
1 AAAGTACAATAATAGG
98045255 AAAGTAC-ATAATAGG
1 AAAGTACAATAATAGG
98045270 AAA
1 AAA
98045273 TAATTCAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (16 bp):
AAAGTACAATAATAGG
Found at i:98046172 original size:7 final size:8
Alignment explanation
Indices: 98046163--98046212 Score: 57
Period size: 8 Copynumber: 6.1 Consensus size: 8
98046153 TACTTATTAA
98046163 ATAATAA-
1 ATAATAAT
98046170 ATAATAATT
1 ATAATAA-T
98046179 ATAATAAT
1 ATAATAAT
98046187 ATAATAAT
1 ATAATAAT
**
98046195 ATATATGTT
1 ATA-ATAAT
98046204 ATAATAAT
1 ATAATAAT
98046212 A
1 A
98046213 ATGGAATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 7 0.19
8 16 0.44
9 13 0.36
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (8 bp):
ATAATAAT
Found at i:98057695 original size:40 final size:40
Alignment explanation
Indices: 98057618--98057695 Score: 90
Period size: 39 Copynumber: 1.9 Consensus size: 40
98057608 ATTATAAAAT
*
98057618 AAAATTATAAAATCTAAAAAAATAAAAAGTAGTTTTAATA
1 AAAATTATAAAATCTAAAAAAATAAAAAATAGTTTTAATA
*
98057658 AAAATTA-AAAA-CATAAAATAATAAATAAAT-GTCTTTAA
1 AAAATTATAAAATC-TAAAAAAATAAA-AAATAGT-TTTAA
98057696 ATATCTTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
38 1 0.03
39 17 0.52
40 15 0.45
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (40 bp):
AAAATTATAAAATCTAAAAAAATAAAAAATAGTTTTAATA
Found at i:98074791 original size:17 final size:18
Alignment explanation
Indices: 98074769--98074804 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
98074759 AGTTAAATAT
98074769 TTAAATTGA-AAAAAAAA
1 TTAAATTGATAAAAAAAA
*
98074786 TTAAATTGATAAATAAAA
1 TTAAATTGATAAAAAAAA
98074804 T
1 T
98074805 GCCAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
TTAAATTGATAAAAAAAA
Found at i:98074811 original size:74 final size:74
Alignment explanation
Indices: 98074689--98074828 Score: 228
Period size: 73 Copynumber: 1.9 Consensus size: 74
98074679 AAAGGTTATT
*
98074689 TATTTAAATTGAAAAAAAACCCATAAAATTGATAAATAAAATGGCAAAAAAATTCATTACATAAA
1 TATTTAAATTGAAAAAAAA--CATAAAATTGATAAATAAAAT-GCCAAAAAATTCATTACATAAA
98074754 TACAAAGTTAAA
63 TACAAAGTTAAA
*
98074766 TATTTAAATTGAAAAAAAA-ATTAAATTGATAAATAAAATGCCAAAAAATTCATTACATAAATA
1 TATTTAAATTGAAAAAAAACATAAAATTGATAAATAAAATGCCAAAAAATTCATTACATAAATA
98074829 TGAAGTTATT
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
73 23 0.38
74 19 0.31
77 19 0.31
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.28
Consensus pattern (74 bp):
TATTTAAATTGAAAAAAAACATAAAATTGATAAATAAAATGCCAAAAAATTCATTACATAAATAC
AAAGTTAAA
Found at i:98077201 original size:14 final size:16
Alignment explanation
Indices: 98077163--98077194 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
98077153 ATAAATAATA
98077163 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
98077178 ATATAAAAATTACATT
1 ATATAAAAATTACATT
98077194 A
1 A
98077195 AAAAAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:98077318 original size:99 final size:102
Alignment explanation
Indices: 98077181--98077471 Score: 355
Period size: 99 Copynumber: 2.9 Consensus size: 102
98077171 TTACATTATA
* *
98077181 TAAAAATTACATTA--AAAAAATCACAAAACAC-TAAACTAAACACTAACAATTTATATAATCTA
1 TAAAAAATACATTACTAAAAAATCACAAAACACAT-AACTAAACACTAACAATTTGTATAATCTA
98077243 ATCATAAATTACTAACAAAATAACTAT-AATT-TTTTT
65 ATCATAAATTACTAACAAAATAACTATAAATTGTTTTT
* * *
98077279 TAAAAAA-ACATTACTAGAAATTCACAAAACACATAACTAAACACTAACAATTTGTATAACCTAA
1 TAAAAAATACATTACTAAAAAATCACAAAACACATAACTAAACACTAACAATTTGTATAATCTAA
98077343 TCATAAATTACTAACAAAATAACTATAAAATTGTTTTT
66 TCATAAATTACTAACAAAATAACTAT-AAATTGTTTTT
* * * * *
98077381 TAAAAAATTACATTACTAAAAAATAACAATACCCTAAACCACTAAACACTAACAATTTGTA-ACT
1 TAAAAAA-TACATTACTAAAAAATCACAAAACAC-ATA--ACTAAACACTAACAATTTGTATAAT
*
98077445 -TAATCCCATAAATTATTAACAAAATAA
62 CTAAT--CATAAATTACTAACAAAATAA
98077472 ATAACTATAG
Statistics
Matches: 166, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
97 6 0.04
98 6 0.04
99 69 0.42
100 1 0.01
101 4 0.02
102 12 0.07
104 20 0.12
105 6 0.04
106 1 0.01
107 41 0.25
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.29
Consensus pattern (102 bp):
TAAAAAATACATTACTAAAAAATCACAAAACACATAACTAAACACTAACAATTTGTATAATCTAA
TCATAAATTACTAACAAAATAACTATAAATTGTTTTT
Found at i:98077713 original size:34 final size:33
Alignment explanation
Indices: 98077675--98077783 Score: 108
Period size: 33 Copynumber: 3.5 Consensus size: 33
98077665 CTAAACACAA
* *
98077675 TAATTTATAATATAATCCTAAATTACTAATAAAT
1 TAATTT-TAAAATAATCCTAAATTACTAACAAAT
98077709 TAATTTTAAAATAAT--TACAA--AC--ACAAA-
1 TAATTTTAAAATAATCCTA-AATTACTAACAAAT
*
98077736 -AATTTATAACATAATCCTAAATTACTAACAAAT
1 TAATTT-TAAAATAATCCTAAATTACTAACAAAT
98077769 TAATTTTAAAATAAT
1 TAATTTTAAAATAAT
98077784 TATAAAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 21
0.71 0.05 0.24
Matches are distributed among these distances:
26 5 0.08
27 8 0.13
28 6 0.10
29 2 0.03
30 4 0.07
31 2 0.03
32 7 0.11
33 16 0.26
34 11 0.18
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (33 bp):
TAATTTTAAAATAATCCTAAATTACTAACAAAT
Found at i:98077734 original size:60 final size:60
Alignment explanation
Indices: 98077667--98077785 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
98077657 ATACTAAACT
* * *
98077667 AAACACAATAATTTATAATATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
98077727 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
98077786 TAAAAAAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:98079096 original size:14 final size:14
Alignment explanation
Indices: 98079073--98079117 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
98079063 TTAATTATGA
98079073 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
98079087 TTAT-GATTTAGGGT
1 TTATAG-TTTAGGGT
*
98079101 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
98079115 TTA
1 TTA
98079118 AGGTTTAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:98079123 original size:14 final size:14
Alignment explanation
Indices: 98079078--98079124 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
98079068 TATGATTATA
*
98079078 GTTTAGGGTTTATG
1 GTTTAGGGTTTAAG
* *
98079092 ATTTAGGGTATATA-
1 GTTTAGGGTTTA-AG
98079106 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
98079120 GTTTA
1 GTTTA
98079125 AGAGTTACTA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
13 1 0.04
14 25 0.96
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:98079226 original size:21 final size:21
Alignment explanation
Indices: 98079202--98079249 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
98079192 TAAGATTTAG
*
98079202 GGGTTTG-AGGTTAAGGATTAC
1 GGGTTTGTA-GTTAAGGATTAA
* *
98079223 GGGTTAGTAGTTAAGGGTTAA
1 GGGTTTGTAGTTAAGGATTAA
98079244 GGGTTT
1 GGGTTT
98079250 AGGGGTTAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.23, C:0.02, G:0.40, T:0.35
Consensus pattern (21 bp):
GGGTTTGTAGTTAAGGATTAA
Found at i:98080719 original size:18 final size:18
Alignment explanation
Indices: 98080696--98080730 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98080686 CGGCAAAATA
*
98080696 AAAATGACAATGATAATG
1 AAAATGACAATAATAATG
*
98080714 AAAATGATAATAATAAT
1 AAAATGACAATAATAAT
98080731 ATAAATAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.11, T:0.26
Consensus pattern (18 bp):
AAAATGACAATAATAATG
Found at i:98080736 original size:18 final size:17
Alignment explanation
Indices: 98080696--98080743 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
98080686 CGGCAAAATA
* *
98080696 AAAATGACAATGATAAT
1 AAAATGATAATAATAAT
98080713 GAAAATGATAATAATAAT
1 -AAAATGATAATAATAAT
*
98080731 ATAAATAATAATA
1 A-AAATGATAATA
98080744 GTATGAAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (17 bp):
AAAATGATAATAATAAT
Found at i:98080980 original size:26 final size:26
Alignment explanation
Indices: 98080930--98080981 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
98080920 TATATGTATT
*
98080930 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
98080956 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
98080982 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:98081296 original size:11 final size:11
Alignment explanation
Indices: 98081282--98081386 Score: 74
Period size: 11 Copynumber: 9.5 Consensus size: 11
98081272 TATTTACATA
98081282 ATATAAAAAAT
1 ATATAAAAAAT
*
98081293 ATATGAATAATAT
1 ATAT-AA-AAAAT
*
98081306 GATATTAAAAAT
1 -ATATAAAAAAT
*
98081318 ATATACATAAAT
1 ATATA-AAAAAT
*
98081330 ATATAATAAAT
1 ATATAAAAAAT
*
98081341 ATAT--ATAAT
1 ATATAAAAAAT
*
98081350 ATATATAAAAT
1 ATATAAAAAAT
*
98081361 GTAT--AAAAT
1 ATATAAAAAAT
*
98081370 ATATAAAATAT
1 ATATAAAAAAT
98081381 ATATAA
1 ATATAA
98081387 TACATACACA
Statistics
Matches: 75, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
9 15 0.20
11 35 0.47
12 16 0.21
13 5 0.07
14 4 0.05
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (11 bp):
ATATAAAAAAT
Found at i:98081310 original size:25 final size:23
Alignment explanation
Indices: 98081242--98081414 Score: 109
Period size: 20 Copynumber: 7.7 Consensus size: 23
98081232 CAATATAGAC
* *
98081242 AAAAATATATACATAATGTAGTATT
1 AAAAATATATA-ATAATATA-TATA
98081267 AAAAATAT-T--TACATA-ATATA
1 AAAAATATATAATA-ATATATATA
*
98081287 AAAAATATATGAATAATATGATATT
1 AAAAATATAT-AATAATAT-ATATA
98081312 AAAAATATATACATAA-ATATATA
1 AAAAATATATA-ATAATATATATA
*
98081335 ATAAATATAT-ATAATATATAT-
1 AAAAATATATAATAATATATATA
*
98081356 -AAAATGTAT-A-AA-ATATATA
1 AAAAATATATAATAATATATATA
* * * *
98081375 AAATATATATAATACATACACATT
1 AAAAATATATAATA-ATATATATA
*
98081399 AGAAATA-ATAATAATA
1 AAAAATATATAATAATA
98081415 ATGTTACAAA
Statistics
Matches: 119, Mismatches: 14, Indels: 33
0.72 0.08 0.20
Matches are distributed among these distances:
18 6 0.05
19 2 0.02
20 26 0.22
21 9 0.08
22 12 0.10
23 23 0.19
24 15 0.13
25 26 0.22
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (23 bp):
AAAAATATATAATAATATATATA
Found at i:98081312 original size:45 final size:45
Alignment explanation
Indices: 98081242--98081388 Score: 157
Period size: 45 Copynumber: 3.3 Consensus size: 45
98081232 CAATATAGAC
* *
98081242 AAAAATATATACATAATGTAGTATTAAAAATATTTACAT-AATATA-
1 AAAAATATATA-ATAATATA-TATTAAAAATATATACATAAATATAT
98081287 AAAAATATATGAATAATATGATATTAAAAATATATACATAAATATAT
1 AAAAATATAT-AATAATAT-ATATTAAAAATATATACATAAATATAT
*
98081334 AATAAATATAT-ATAATATATA-T-AAAATGTAT--A-AAATATAT
1 AA-AAATATATAATAATATATATTAAAAATATATACATAAATATAT
98081374 AAAATATATATAATA
1 AAAA-ATATATAATA
98081389 CATACACATT
Statistics
Matches: 92, Mismatches: 3, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
39 2 0.02
40 16 0.17
41 4 0.04
43 8 0.09
44 1 0.01
45 36 0.39
46 15 0.16
47 2 0.02
48 8 0.09
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (45 bp):
AAAAATATATAATAATATATATTAAAAATATATACATAAATATAT
Found at i:98081350 original size:9 final size:9
Alignment explanation
Indices: 98081279--98081388 Score: 65
Period size: 9 Copynumber: 12.7 Consensus size: 9
98081269 AAATATTTAC
98081279 ATAATATA-
1 ATAATATAT
*
98081287 A-AAAATAT
1 ATAATATAT
98081295 ATGAATA-AT
1 AT-AATATAT
*
98081304 ATGATAT-T
1 ATAATATAT
*
98081312 A-AAAATAT
1 ATAATATAT
*
98081320 ATACATAAAT
1 ATA-ATATAT
98081330 AT-ATA-AT
1 ATAATATAT
98081337 A-AATATAT
1 ATAATATAT
98081345 ATAATATAT
1 ATAATATAT
*
98081354 ATAAAATGTAT
1 AT--AATATAT
*
98081365 AAAATATAT
1 ATAATATAT
*
98081374 AAAATATAT
1 ATAATATAT
98081383 ATAATA
1 ATAATA
98081389 CATACACATT
Statistics
Matches: 79, Mismatches: 11, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
7 14 0.18
8 15 0.19
9 34 0.43
10 9 0.11
11 7 0.09
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAATATAT
Found at i:98081492 original size:23 final size:23
Alignment explanation
Indices: 98081447--98081492 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
98081437 AATACCTCAT
* *
98081447 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
98081470 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
98081493 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:98083822 original size:26 final size:26
Alignment explanation
Indices: 98083786--98083837 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
98083776 TGTGCTTGTT
* *
98083786 TTGTTGTGATAGGGTGGAAATAGAAC
1 TTGTTGTGATAGAGTAGAAATAGAAC
98083812 TTGTTGTGATAGAGTAGAAATAGAAC
1 TTGTTGTGATAGAGTAGAAATAGAAC
98083838 ACTTTTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.31, T:0.31
Consensus pattern (26 bp):
TTGTTGTGATAGAGTAGAAATAGAAC
Found at i:98085741 original size:165 final size:166
Alignment explanation
Indices: 98085437--98085751 Score: 569
Period size: 166 Copynumber: 1.9 Consensus size: 166
98085427 TTTTTTTATT
*
98085437 TTTTCCACATCGTCAAATTTTATTTTTATTATTTTTTTCCAAGGAACAAAGTTGACATTTCATCT
1 TTTTCCACATCGTCAAACTTTATTTTTATTATTTTTTTCCAAGGAACAAAGTTGACATTTCATCT
* *
98085502 TTTACAGTTTTCGACTTTTTTATACACAATTTTTTTAAATTATATAATTTGGATTAATTTATTTA
66 TATACAGTTTTCGACTTTTTTAAACACAATTTTTTTAAATTATATAATTTGGATTAATTTATTTA
98085567 AAAATTATTTAATTAAAATATTTTTTTTCCTGGTGA
131 AAAATTATTTAATTAAAATATTTTTTTTCCTGGTGA
*
98085603 TTTTCCACATCGTCAAACTTTATTTTTATTTTTTTTTTCCAAGGAACAAAGTTGACATTTCATCT
1 TTTTCCACATCGTCAAACTTTATTTTTATTATTTTTTTCCAAGGAACAAAGTTGACATTTCATCT
*
98085668 TATACGGTTTTCGACTTTTTTAAACACAA-TTTTTTAAATTATATAATTTGGATTAATTTATTTA
66 TATACAGTTTTCGACTTTTTTAAACACAATTTTTTTAAATTATATAATTTGGATTAATTTATTTA
*
98085732 AATATTATTTAATTAAAATA
131 AAAATTATTTAATTAAAATA
98085752 ATTAAATACA
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
165 54 0.38
166 89 0.62
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (166 bp):
TTTTCCACATCGTCAAACTTTATTTTTATTATTTTTTTCCAAGGAACAAAGTTGACATTTCATCT
TATACAGTTTTCGACTTTTTTAAACACAATTTTTTTAAATTATATAATTTGGATTAATTTATTTA
AAAATTATTTAATTAAAATATTTTTTTTCCTGGTGA
Found at i:98085817 original size:34 final size:34
Alignment explanation
Indices: 98085779--98085859 Score: 135
Period size: 34 Copynumber: 2.4 Consensus size: 34
98085769 TTAAACTTAC
*
98085779 ATAACTTACATAATACATAAATATATATCATATA
1 ATAACTTACATAATACATAAACATATATCATATA
* *
98085813 ATAACTTACATAATACATAAACCTATATCATGTA
1 ATAACTTACATAATACATAAACATATATCATATA
98085847 ATAACTTACATAA
1 ATAACTTACATAA
98085860 CTTACGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.51, C:0.15, G:0.01, T:0.33
Consensus pattern (34 bp):
ATAACTTACATAATACATAAACATATATCATATA
Found at i:98085943 original size:9 final size:9
Alignment explanation
Indices: 98085929--98085965 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
98085919 TATATCATAT
98085929 CATAACTTA
1 CATAACTTA
98085938 CATAACTTA
1 CATAACTTA
98085947 CATAACTTA
1 CATAACTTA
*
98085956 CTTAACTTA
1 CATAACTTA
98085965 C
1 C
98085966 GTAATACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:98087803 original size:15 final size:15
Alignment explanation
Indices: 98087785--98087817 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
98087775 TAATATTTAT
98087785 ATGGGTTCGACATTA
1 ATGGGTTCGACATTA
98087800 ATGGGTTCGACATTA
1 ATGGGTTCGACATTA
98087815 ATG
1 ATG
98087818 ATGTAGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (15 bp):
ATGGGTTCGACATTA
Found at i:98090983 original size:26 final size:26
Alignment explanation
Indices: 98090918--98091031 Score: 120
Period size: 26 Copynumber: 4.3 Consensus size: 26
98090908 TGGAGGAAGC
*
98090918 GTTCTGGTGGCTATGGCACAAACATCT
1 GTTCTGGTGGCTATGCCACAAA-ATCT
*
98090945 GTTTCTGGTGGCTACGCCACAAAATCT
1 G-TTCTGGTGGCTATGCCACAAAATCT
* * *
98090972 GTTCTTGTGGCTTTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAAAATCT
* * * *
98090998 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAAAATCT
98091025 GTTCTGG
1 GTTCTGG
98091032 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 28 0.37
27 28 0.37
28 19 0.25
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAAAATCT
Done.