Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 295 of 332
Found at i:98091019 original size:53 final size:54
Alignment explanation
Indices: 98090918--98091031 Score: 133
Period size: 53 Copynumber: 2.1 Consensus size: 54
98090908 TGGAGGAAGC
* * *
98090918 GTTCTGGTGGCTATGGCACAAACATCTGTTTCTGGTGGCTACGCCACAAAATCT
1 GTTCTGGTGGCTATGCCACAAACATCTGTATCTGGTGACTACGCCACAAAATCT
* * * * *
98090972 GTTCTTGTGGCTTTGCCAC-AATATCTGTATCTGGTGACT-CTGTCACAATATCT
1 GTTCTGGTGGCTATGCCACAAACATCTGTATCTGGTGACTAC-GCCACAAAATCT
98091025 GTTCTGG
1 GTTCTGG
98091032 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
52 1 0.02
53 33 0.66
54 16 0.32
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAACATCTGTATCTGGTGACTACGCCACAAAATCT
Found at i:98091020 original size:27 final size:26
Alignment explanation
Indices: 98090918--98091031 Score: 95
Period size: 27 Copynumber: 4.3 Consensus size: 26
98090908 TGGAGGAAGC
* * * *
98090918 GTTCTGGTGGCTATGGCACAAACATCT
1 GTTCTGGTGACTCTGCCAC-AATATCT
* *
98090945 GTTTCTGGTGGCTAC-GCCACAAAATCT
1 G-TTCTGGTGACT-CTGCCACAATATCT
* * *
98090972 GTTCTTGTGGCTTTGCCACAATATCT
1 GTTCTGGTGACTCTGCCACAATATCT
*
98090998 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGACTCTGCCACAATATCT
98091025 GTTCTGG
1 GTTCTGG
98091032 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
26 28 0.38
27 30 0.41
28 15 0.21
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGACTCTGCCACAATATCT
Found at i:98092578 original size:42 final size:42
Alignment explanation
Indices: 98092531--98092667 Score: 213
Period size: 42 Copynumber: 3.3 Consensus size: 42
98092521 CATAGTTCAA
98092531 CTATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAG
1 CTATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAG
*
98092573 CTATGGTCTTACACATCTTCACATAATGATGCCATAGCCTAG
1 CTATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAG
* * *
98092615 CTATGGTCTTACACATATTCATAT-ATCGATGCCATATCCCAG
1 CTATGGTCTTACACATCTTCACATAAT-GATGCCATAGCCCAG
*
98092657 ATATGGTCTTA
1 CTATGGTCTTA
98092668 TACAGTAGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 2 0.02
42 86 0.98
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (42 bp):
CTATGGTCTTACACATCTTCACATAATGATGCCATAGCCCAG
Found at i:98092735 original size:7 final size:7
Alignment explanation
Indices: 98092723--98092772 Score: 82
Period size: 7 Copynumber: 7.1 Consensus size: 7
98092713 TATACGGAAA
98092723 TCACTTG
1 TCACTTG
*
98092730 TCACTTT
1 TCACTTG
98092737 TCACTTG
1 TCACTTG
*
98092744 TCACTTT
1 TCACTTG
98092751 TCACTTG
1 TCACTTG
98092758 TCACTTG
1 TCACTTG
98092765 TCACTTG
1 TCACTTG
98092772 T
1 T
98092773 AGCCGGAGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.14, C:0.28, G:0.10, T:0.48
Consensus pattern (7 bp):
TCACTTG
Found at i:98092742 original size:14 final size:14
Alignment explanation
Indices: 98092723--98092772 Score: 91
Period size: 14 Copynumber: 3.6 Consensus size: 14
98092713 TATACGGAAA
98092723 TCACTTGTCACTTT
1 TCACTTGTCACTTT
98092737 TCACTTGTCACTTT
1 TCACTTGTCACTTT
*
98092751 TCACTTGTCACTTG
1 TCACTTGTCACTTT
98092765 TCACTTGT
1 TCACTTGT
98092773 AGCCGGAGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.14, C:0.28, G:0.10, T:0.48
Consensus pattern (14 bp):
TCACTTGTCACTTT
Found at i:98092806 original size:31 final size:31
Alignment explanation
Indices: 98092771--98092888 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
98092761 CTTGTCACTT
* *
98092771 GTAGCCGGAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
98092802 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
98092833 GTAGCCGGAGCTACCACTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
98092864 GTAGCAGAAGCTACAACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
98092889 TGTCATTTGT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:98092969 original size:50 final size:50
Alignment explanation
Indices: 98092864--98093040 Score: 241
Period size: 50 Copynumber: 3.5 Consensus size: 50
98092854 CATTGATCAG
* *
98092864 GTAGCAGAAGCTA-CAACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATC-ACTTATCACTT-TCATTTGTCATTGATCAGATAAGT
* *
98092915 GTAGCCGAAGCTATCACTTATCACTTTCACTTT-TCCTTGATGAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCA-TTTGTCATTGATCAGATAAGT
* * *
98092965 GTAGCCGAAGCTATTACTTATCACTTTTATTTGTCGTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCATTGATCAGATAAGT
*
98093015 GTAGCCAAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
98093041 GTTGCCATGG
Statistics
Matches: 113, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
49 3 0.03
50 84 0.74
51 25 0.22
52 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCATTGATCAGATAAGT
Found at i:98096995 original size:5 final size:5
Alignment explanation
Indices: 98096979--98097021 Score: 77
Period size: 5 Copynumber: 8.4 Consensus size: 5
98096969 AAATAGTAAT
98096979 AATAA GAATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
1 AATAA -AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
98097022 AAGGCTAACA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 32 0.86
6 5 0.14
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:98102076 original size:15 final size:15
Alignment explanation
Indices: 98102034--98102076 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
98102024 TACTTACCAT
* *
98102034 AAAATAAATAAATTT
1 AAAATAAATAACTTA
*
98102049 AAAATTAAT-ACTTA
1 AAAATAAATAACTTA
98102063 AAAATAAATAACTT
1 AAAATAAATAACTT
98102077 GAATTATAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATAAATAACTTA
Found at i:98102235 original size:13 final size:13
Alignment explanation
Indices: 98102217--98102242 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98102207 AGTAATTAAT
98102217 AATAATAACTGAA
1 AATAATAACTGAA
98102230 AATAATAACTGAA
1 AATAATAACTGAA
98102243 TTTCTATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (13 bp):
AATAATAACTGAA
Found at i:98104260 original size:3 final size:3
Alignment explanation
Indices: 98104252--98104340 Score: 117
Period size: 3 Copynumber: 30.0 Consensus size: 3
98104242 CCTGGGCAGT
* * *
98104252 AGA AGA AGA A-T AGA AGA AGA AGA AGA AGA AGA AGA AAA AAA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* * *
98104299 AAA AGA AGA AAA AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
98104341 GAAAATGGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
2 1 0.01
3 74 0.99
ACGTcount: A:0.72, C:0.00, G:0.27, T:0.01
Consensus pattern (3 bp):
AGA
Found at i:98105214 original size:30 final size:31
Alignment explanation
Indices: 98105162--98105244 Score: 96
Period size: 30 Copynumber: 2.6 Consensus size: 31
98105152 AACCCTTCCT
* *
98105162 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAGAAAATATA
*
98105193 GCATGAAATCCAACC-AAAACAGAAAATGTA
1 GCATGAAATCCAACCAAAAACAGAAAATATA
* *
98105223 GCATAAAAAATACAACCAAAAA
1 GCAT--GAAATCCAACCAAAAA
98105245 TAATAAATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
30 17 0.39
31 14 0.32
32 9 0.20
33 4 0.09
ACGTcount: A:0.58, C:0.20, G:0.08, T:0.13
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGAAAATATA
Found at i:98105992 original size:13 final size:14
Alignment explanation
Indices: 98105966--98105994 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
98105956 ACTAACGACG
98105966 AATTAAACCATTAT
1 AATTAAACCATTAT
98105980 AATTAAA-CATTAT
1 AATTAAACCATTAT
98105993 AA
1 AA
98105995 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:98108449 original size:27 final size:26
Alignment explanation
Indices: 98108380--98108490 Score: 89
Period size: 27 Copynumber: 4.1 Consensus size: 26
98108370 AGCATGGCTG
** *
98108380 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
98108406 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
98108433 CCAGAACAGATATTTGTAGC-GTAGCCA
1 CCAGAACAGATA-TTGTGGCAG-AGCCA
* * * *
98108460 CTAGAAATAGATGTCTGTGGCATAGCCA
1 CCAG-AACAGATAT-TGTGGCAGAGCCA
98108488 CCA
1 CCA
98108491 AAACGCTTCC
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
26 12 0.18
27 37 0.55
28 18 0.27
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:98111949 original size:19 final size:19
Alignment explanation
Indices: 98111925--98111971 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
98111915 CAACGCCTCT
98111925 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCA-TCA
98111944 TTTGCATTACATTTCATCA
1 TTTGCATTACATTTCATCA
*
98111963 TATGCATTA
1 TTTGCATTA
98111972 AGTTTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (19 bp):
TTTGCATTACATTTCATCA
Found at i:98120122 original size:13 final size:13
Alignment explanation
Indices: 98120104--98120128 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98120094 GTAATCACAT
98120104 CACACGGGCGTGG
1 CACACGGGCGTGG
98120117 CACACGGGCGTG
1 CACACGGGCGTG
98120129 TCCCTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.44, T:0.08
Consensus pattern (13 bp):
CACACGGGCGTGG
Found at i:98120995 original size:13 final size:13
Alignment explanation
Indices: 98120979--98121003 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98120969 GTTAATTAGT
98120979 TAATTAGTTTAAA
1 TAATTAGTTTAAA
98120992 TAATTAGTTTAA
1 TAATTAGTTTAA
98121004 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:98126321 original size:16 final size:16
Alignment explanation
Indices: 98126300--98126351 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
98126290 ATTTTCTTTC
98126300 TATTTTTATTTATTCT
1 TATTTTTATTTATTCT
98126316 TATTTTTATTTA-T-T
1 TATTTTTATTTATTCT
98126330 TA--TTTATTTCATTCT
1 TATTTTTATTT-ATTCT
98126345 TATTTTT
1 TATTTTT
98126352 CTTTTGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
12 7 0.23
13 1 0.03
14 4 0.13
15 4 0.13
16 12 0.39
17 3 0.10
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTTTTATTTATTCT
Found at i:98126364 original size:29 final size:28
Alignment explanation
Indices: 98126291--98126372 Score: 96
Period size: 29 Copynumber: 2.8 Consensus size: 28
98126281 AATCCTCCTA
98126291 TTTTCTTTCTATTTTTATTT-ATTCTTAT
1 TTTTCTTT-TATTTTTATTTCATTCTTAT
*
98126319 TTTT-ATTTATTTATTTATTTCATTCTTAT
1 TTTTCTTTTA-TT-TTTATTTCATTCTTAT
98126348 TTTTCTTTTGATTTTTATTTTCATT
1 TTTTCTTTT-ATTTTTA-TTTCATT
98126373 TCAATTTTCC
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
28 11 0.24
29 16 0.35
30 12 0.26
31 1 0.02
ACGTcount: A:0.16, C:0.09, G:0.01, T:0.74
Consensus pattern (28 bp):
TTTTCTTTTATTTTTATTTCATTCTTAT
Found at i:98129297 original size:13 final size:13
Alignment explanation
Indices: 98129281--98129305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98129271 CTAAATTAGT
98129281 TAATTAGTTTAAA
1 TAATTAGTTTAAA
98129294 TAATTAGTTTAA
1 TAATTAGTTTAA
98129306 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:98130127 original size:185 final size:186
Alignment explanation
Indices: 98129885--98130363 Score: 658
Period size: 185 Copynumber: 2.6 Consensus size: 186
98129875 ATGTCCCTGG
* * * *
98129885 AGTTGCAGTGGAGCGGACTAAA-AATAGCAAATCTTATTTCACTGAAATTGTAGTGGAACAGATT
1 AGTTGCAGTGGAGCAGACTAAAGAA-AACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATT
98129949 AAAGCTACAAATTACAAACCTTATCCCCCTGAAGTTGCAGTGGAGC-AGGTTTAAGTTACGAGTC
65 AAAGCTACAAATTACAAACCTTATCCCCCTGAAGTTGCAGTGGAGCTAGGTTTAAGTTACGAGTC
* * * * *
98130013 TTATCTCCCTTAAGTTGCAGTGGAGTAGACTAAAGATAGCAAATCTTATTTCCCTAA
130 TCATCTCCCTGAAGTTACAATGGAGTAGACTAAAGATAGCAAATCTTATCTCCCTAA
* * ** *
98130070 AGTTACAGTGGAGCAGACGAAAGAAAACAAATCTTATTTCCCTGAAGTTACAGTGGAACATATTA
1 AGTTGCAGTGGAGCAGACTAAAGAAAACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTA
* *
98130135 AAGCTACAAATTACAAACCTTATCCCCTTGAAGCTGCAGTGG-GCTAGGTTTAAGTTACGAGTCT
66 AAGCTACAAATTACAAACCTTATCCCCCTGAAGTTGCAGTGGAGCTAGGTTTAAGTTACGAGTCT
* * * * *
98130199 CATCTCTCTGAAGTTACAATGGAGTAGACTGAAGATAGCCAATGTTATCTCTCTAA
131 CATCTCCCTGAAGTTACAATGGAGTAGACTAAAGATAGCAAATCTTATCTCCCTAA
* * * *
98130255 AGTTGCAGTGGAGTAGATTAAAGAATACAAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTA
1 AGTTGCAGTGGAGCAGACTAAAGAAAACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTA
* * * * *
98130320 AAGCTATAAGTCACAAATCTTATCTCCCTGAAGTTGCAGTGGAG
66 AAGCTACAAATTACAAACCTTATCCCCCTGAAGTTGCAGTGGAG
98130364 TAAATTAAAG
Statistics
Matches: 254, Mismatches: 37, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
184 2 0.01
185 249 0.98
186 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (186 bp):
AGTTGCAGTGGAGCAGACTAAAGAAAACAAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTA
AAGCTACAAATTACAAACCTTATCCCCCTGAAGTTGCAGTGGAGCTAGGTTTAAGTTACGAGTCT
CATCTCCCTGAAGTTACAATGGAGTAGACTAAAGATAGCAAATCTTATCTCCCTAA
Found at i:98130361 original size:51 final size:45
Alignment explanation
Indices: 98129878--98130418 Score: 261
Period size: 45 Copynumber: 11.7 Consensus size: 45
98129868 GAGTCCCATG
* ** * *
98129878 TCCCTGGAGTTGCAGTGGAGCGGACTAAA-AATAGCAAATCTTATT
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATA-CAAATCTTATC
* * * ** *
98129923 TCACTGAAATTGTAGTGGAACAGATTAAAGCTACAAATTACAAACCTTATC
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAG-----AA-TACAAATCTTATC
* * * * * * *
98129974 CCCCTGAAGTTGCAGTGGAGCAGGTTTAAG-TTACGAGTCTTATC
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATACAAATCTTATC
* * *
98130018 TCCCTTAAGTTGCAGTGGAGTAGACTAAAG-ATAGCAAATCTTATT
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATA-CAAATCTTATC
* * * ** * *
98130063 TCCCTAAAGTTACAGTGGAGCAGACGAAAGAAAACAAATCTTATT
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATACAAATCTTATC
* ** * *
98130108 TCCCTGAAGTTACAGTGGAACATATTAAAGCTACAAATTACAAACCTTATC
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAG-----AA-TACAAATCTTATC
* * * * * * *
98130159 -CCCTTGAAGCTGCAGTGG-GCTAGGTTTAAG-TTACGAGTCTCATC
1 TCCC-TGAAGTTGCAGTGGAG-TAGATTAAAGAATACAAATCTTATC
* * * * * * *
98130203 TCTCTGAAGTTACAATGGAGTAGACTGAAG-ATAGCCAATGTTATC
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATA-CAAATCTTATC
* * *
98130248 TCTCTAAAGTTGCAGTGGAGTAGATTAAAGAATACAAATCTTATT
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATACAAATCTTATC
* *
98130293 TCCCTGAAGTTGTAGTGGAATAGATTAAAGCTATAAGTCACAAATCTTATC
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAG----AA-T-ACAAATCTTATC
* * * * *
98130344 TCCCTGAAGTTGCAGTGGAGTAAATTAAAG-ATAGAGAGTTTTATT
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATACA-AATCTTATC
* * * *
98130389 TCCTTAAAGTTGTAGTGGAATAGATTAAAG
1 TCCCTGAAGTTGCAGTGGAGTAGATTAAAG
98130419 CTACAAGTTA
Statistics
Matches: 376, Mismatches: 92, Indels: 56
0.72 0.18 0.11
Matches are distributed among these distances:
44 67 0.18
45 193 0.51
46 6 0.02
49 2 0.01
50 6 0.02
51 100 0.27
52 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (45 bp):
TCCCTGAAGTTGCAGTGGAGTAGATTAAAGAATACAAATCTTATC
Found at i:98130407 original size:96 final size:96
Alignment explanation
Indices: 98129885--98130451 Score: 292
Period size: 96 Copynumber: 6.1 Consensus size: 96
98129875 ATGTCCCTGG
*** * * *
98129885 AGTTGCAGTGGAGCGGACTAAA-AATAGCAAATCTTATTTCACTGAAA-TTGTAGTGGAACAGAT
1 AGTTGCAGTGGAGTAAATTAAAGAATA-CAAATCTTATTTCCCT-AAAGTTGTAGTGGAATAGAT
* * * * *
98129948 TAAAGCTACAAATTACAAACCTTATCCCCCTGA
64 TAAAGCTACAAGTCACAAATCTTATCTCTCTGA
* ** * * * * * * * * *
98129981 AGTTGCAGTGGAGCAGGTTTAAG-TTACGAGTCTTATCTCCCTTAAGTTGCAGTGGAGTAGACTA
1 AGTTGCAGTGGAGTAAATTAAAGAATACAAATCTTATTTCCCTAAAGTTGTAGTGGAATAGATTA
* * * *
98130045 AAG--A-TAG---CAAATCTTATTTCCCTAA
66 AAGCTACAAGTCACAAATCTTATCTCTCTGA
* * * ** * * ** * *
98130070 AGTTACAGTGGAGCAGACGAAAGAAAACAAATCTTATTTCCCTGAAGTTACAGTGGAACATATTA
1 AGTTGCAGTGGAGTAAATTAAAGAATACAAATCTTATTTCCCTAAAGTTGTAGTGGAATAGATTA
* * * *
98130135 AAGCTACAAATTACAAACCTTATC-CCCTTGA
66 AAGCTACAAGTCACAAATCTTATCTCTC-TGA
* ** * * * * * * * * ** * * *
98130166 AGCTGCAGTGG-GCTAGGTTTAAG-TTACGAGTCTCATCTCTCTGAAGTTACAATGGAGTAGACT
1 AGTTGCAGTGGAG-TAAATTAAAGAATACAAATCTTATTTCCCTAAAGTTGTAGTGGAATAGATT
* * * *
98130229 GAAG--A-TAG-C-C-AATGTTATCTCTCTAA
65 AAAGCTACAAGTCACAAATCTTATCTCTCTGA
* *
98130255 AGTTGCAGTGGAGTAGATTAAAGAATACAAATCTTATTTCCCTGAAGTTGTAGTGGAATAGATTA
1 AGTTGCAGTGGAGTAAATTAAAGAATACAAATCTTATTTCCCTAAAGTTGTAGTGGAATAGATTA
* *
98130320 AAGCTATAAGTCACAAATCTTATCTCCCTGA
66 AAGCTACAAGTCACAAATCTTATCTCTCTGA
* * * *
98130351 AGTTGCAGTGGAGTAAATTAAAG-ATAGAGAGTTTTATTTCCTTAAAGTTGTAGTGGAATAGATT
1 AGTTGCAGTGGAGTAAATTAAAGAATACA-AATCTTATTTCCCTAAAGTTGTAGTGGAATAGATT
* *
98130415 AAAGCTACAAGTTACAAATCCTATAC-CTCTGA
65 AAAGCTACAAGTCACAAATCTTAT-CTCTCTGA
98130447 AGTTG
1 AGTTG
98130452 TGGTAGGTTA
Statistics
Matches: 352, Mismatches: 97, Indels: 44
0.71 0.20 0.09
Matches are distributed among these distances:
89 59 0.17
90 69 0.20
92 4 0.01
93 5 0.01
94 3 0.01
95 69 0.20
96 142 0.40
97 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (96 bp):
AGTTGCAGTGGAGTAAATTAAAGAATACAAATCTTATTTCCCTAAAGTTGTAGTGGAATAGATTA
AAGCTACAAGTCACAAATCTTATCTCTCTGA
Found at i:98130787 original size:55 final size:54
Alignment explanation
Indices: 98130714--98130820 Score: 151
Period size: 55 Copynumber: 2.0 Consensus size: 54
98130704 ATTAAATCAT
* * * *
98130714 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTAGC
1 AAATCTTATCACCCTGAAGTTGCAGTAGAGCAGATCGAAGATA-CAAAACTTAGC
**
98130769 AAATCTTATCACTTTGAAGTTGCAGTAGAGCAGATCGAAGATACAAAACTTA
1 AAATCTTATCACCCTGAAGTTGCAGTAGAGCAGATCGAAGATACAAAACTTA
98130821 TCTCTCTGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 8 0.17
55 38 0.83
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
AAATCTTATCACCCTGAAGTTGCAGTAGAGCAGATCGAAGATACAAAACTTAGC
Found at i:98133716 original size:17 final size:17
Alignment explanation
Indices: 98133676--98133731 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
98133666 TATATTAAAA
* *
98133676 TTATTATTATTATGGTT
1 TTATAATTATTATGATT
98133693 TTATAATTATTATGATTAT
1 TTATAATTATTATGA-T-T
*
98133712 TTAATAAATATTAT-ATT
1 TT-ATAATTATTATGATT
98133729 TTA
1 TTA
98133732 ATTAAATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 1 0.03
17 16 0.48
18 2 0.06
19 4 0.12
20 10 0.30
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (17 bp):
TTATAATTATTATGATT
Found at i:98134126 original size:12 final size:12
Alignment explanation
Indices: 98134109--98134139 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
98134099 GAAGCAGGGG
98134109 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
98134121 AGAAAAAGGGAA
1 AGAAAAAGAGAA
98134133 AGAAAAA
1 AGAAAAA
98134140 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:98135306 original size:18 final size:18
Alignment explanation
Indices: 98135283--98135323 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
98135273 TAAAAAAAAA
98135283 AGAAATT-GAATTATGAAT
1 AGAAATTGGAATTATG-AT
*
98135301 AGAAATTGGAATTGTGAT
1 AGAAATTGGAATTATGAT
98135319 AGAAA
1 AGAAA
98135324 GAGAAAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (18 bp):
AGAAATTGGAATTATGAT
Found at i:98141175 original size:38 final size:38
Alignment explanation
Indices: 98141124--98141200 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
98141114 TTAGTCAAGC
98141124 ATCTTACCGAGGCTTATAACAGCATAAACATCATTTTA
1 ATCTTACCGAGGCTTATAACAGCATAAACATCATTTTA
98141162 ATCTTACCGAGGCTTATAACAGCATAAACATCATTTTA
1 ATCTTACCGAGGCTTATAACAGCATAAACATCATTTTA
98141200 A
1 A
98141201 CAATTCAAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (38 bp):
ATCTTACCGAGGCTTATAACAGCATAAACATCATTTTA
Found at i:98157247 original size:12 final size:12
Alignment explanation
Indices: 98157232--98157256 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98157222 GTAATGGTAA
98157232 CAGTAACAGTAG
1 CAGTAACAGTAG
98157244 CAGTAACAGTAG
1 CAGTAACAGTAG
98157256 C
1 C
98157257 GGTACACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CAGTAACAGTAG
Found at i:98158620 original size:138 final size:135
Alignment explanation
Indices: 98158385--98158635 Score: 310
Period size: 138 Copynumber: 1.8 Consensus size: 135
98158375 ACTTTTATGT
* * * *
98158385 TTTAATTATATTATAATATAATATTATTCTTAAATAATAAGTAAGTATACATGTATACTACAAAT
1 TTTAATTATATTATAAAATAATAATATTCTTAAATAACAAGTAAATATACATGTATA-TACAAAT
* *
98158450 GTATATATATCATTGGTACACATATAAATTATTATTACCACACACTTGTCTTTATTTAATTATTT
65 GTATATAAATCATTAGTACACATATAAATTATTATTACCACACACTTGTCTTTATTTAATTATTT
98158515 ACTTTA
130 ACTTTA
98158521 TTTAATTA-ATTATAAAATAATAATATTTACTTAAATAACAAGTAAATACATACATGTAT-TACA
1 TTTAATTATATTATAAAATAATAATA-TT-CTTAAATAACAAGTAAAT--ATACATGTATATACA
* * ** * *
98158584 AATGTATGTACAAT-ATTTATTACACATATATTTTATTTTTATCACACACTTG
62 AATGTATATA-AATCA-TTAGTACACATATAAATTATTATTACCACACACTTG
98158636 GCATTCACTT
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
135 15 0.15
136 10 0.10
137 30 0.31
138 32 0.33
139 10 0.10
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.43
Consensus pattern (135 bp):
TTTAATTATATTATAAAATAATAATATTCTTAAATAACAAGTAAATATACATGTATATACAAATG
TATATAAATCATTAGTACACATATAAATTATTATTACCACACACTTGTCTTTATTTAATTATTTA
CTTTA
Found at i:98164630 original size:44 final size:44
Alignment explanation
Indices: 98164563--98164803 Score: 146
Period size: 44 Copynumber: 5.4 Consensus size: 44
98164553 TTTAACCTGT
* * ** *
98164563 TCCACTGTAACTTCAAGGG-GATAAGGTTTGTGGTTTCAATCCGC
1 TCCACTGCAACTTC-AGGGAGATAAGGTTAGTAATTTCAATCTGC
** * * * *
98164607 TCCACTGCAACTTCAGGGAGATAAGACTAGTGACTTCAACCCGC
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTAATTTCAATCTGC
* * * * * * *
98164651 TCTACTACAACTTTAGAGAGATAAGGTTCACTATTTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGGTT-AGTAATTTCAATCTGC
* * *
98164696 TCTACTGCAACTTCAGAGAGATAAGACTT-GTAATTTCAA-CTTGC
1 TCCACTGCAACTTCAGGGAGATAAG-GTTAGTAATTTCAATC-TGC
* * * *** * *
98164740 TCCACTGCAACTTCAGGAAGACAAGGTTCGCCGTCTTCGATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTAAT-TTCAATCTGC
*
98164785 TCCACTACAACTTCAGGGA
1 TCCACTGCAACTTCAGGGA
98164804 AACAAGATCT
Statistics
Matches: 152, Mismatches: 38, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
43 7 0.05
44 87 0.57
45 55 0.36
46 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGGTTAGTAATTTCAATCTGC
Found at i:98164766 original size:89 final size:89
Alignment explanation
Indices: 98164596--98164768 Score: 213
Period size: 89 Copynumber: 1.9 Consensus size: 89
98164586 AGGTTTGTGG
* * *
98164596 TTTCAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGTGACTTCAACCCGCTCTACTACAA
1 TTTCAATCCGCTCCACTGCAACTTCAGAGAGATAAGACTAGTAACTTCAACCCGCTCCACTACAA
* *
98164661 CTTTAGAGAGATAAGGTTCACTAT
66 CTTCAGAGAGACAAGGTTCACTAT
* * * * * ** *
98164685 TTTCAGTCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTAATTTCAACTTGCTCCACTGCAA
1 TTTCAATCCGCTCCACTGCAACTTCAGAGAGATAAGACTAGTAACTTCAACCCGCTCCACTACAA
98164750 CTTCAG-GAAGACAAGGTTC
66 CTTCAGAG-AGACAAGGTTC
98164769 GCCGTCTTCG
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
88 1 0.01
89 69 0.99
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (89 bp):
TTTCAATCCGCTCCACTGCAACTTCAGAGAGATAAGACTAGTAACTTCAACCCGCTCCACTACAA
CTTCAGAGAGACAAGGTTCACTAT
Found at i:98164883 original size:133 final size:133
Alignment explanation
Indices: 98164737--98165345 Score: 975
Period size: 133 Copynumber: 4.6 Consensus size: 133
98164727 AATTTCAACT
* * * * *
98164737 TGCTCCACTGCAACTTCAGGAAGACAAGGTTCGCCGTCTTCGATCTGTTCCACTACAACTTCAGG
1 TGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGG
* * *
98164802 GAAACAAGATCTACAATCTTCAGGCTACTCCACTACAACTTTAGGGAGATAGGATGATGGCTTAA
66 GAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAA
*
98164867 AAC
131 ATC
* *
98164870 TGCTTTACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATTTGCTCCACTGCAACTTCAGG
1 TGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGG
*
98164935 GAGACAAGATCTACAATCTTCAGCCTACTCCACTAAAACTTTAGGGAGATAGGATGGTGGCTTAA
66 GAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAA
98165000 ATC
131 ATC
* *
98165003 TGCTTCACTGCAACTTCAGGAGGACAAGATTCGCCATCTTCGATTTGCTCCACTGCAACTTCAGG
1 TGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGG
* * * *
98165068 GAGACAAGATCTATAATCTTCCGGCTACTCCACTACAACTTTAGGAAGATAGGATGGTGGCTTAA
66 GAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAA
98165133 ATC
131 ATC
* * * *
98165136 TGCTTCACTGTAACTTCAAGAAGACAAGATTTGTCGTCTTCGATTTGCTCCACTGCAACTTCAGG
1 TGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGG
98165201 GAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAA
66 GAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAA
98165266 ATC
131 ATC
* * * *
98165269 TGCTTCACTACAACTTCAGGAAGACTAGATTCGCCGTCCTCGATCTGCTCCACTGCAACTTCAGG
1 TGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGG
*
98165334 GAGGCAAGATCT
66 GAGACAAGATCT
98165346 GTAGAATTGG
Statistics
Matches: 436, Mismatches: 40, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
133 436 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (133 bp):
TGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATTTGCTCCACTGCAACTTCAGG
GAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAA
ATC
Found at i:98164926 original size:45 final size:45
Alignment explanation
Indices: 98164737--98165343 Score: 249
Period size: 45 Copynumber: 13.7 Consensus size: 45
98164727 AATTTCAACT
* *
98164737 TGCTCCACTGCAACTTCAGGAAGACAAGGTTCGCCGTCTTCGATC
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATC
* * * * ** *
98164782 TGTTCCACTACAACTTCAGGGAA-ACAAGATCTACAATCTTC-AGGC
1 TGCTCCACTGCAACTTCA-GGAAGACAAGATTTGCCGTCTTCGA-TC
* * * * * * * ** *
98164827 TACTCCACTACAACTTTAGGGAGATAGGATGATG--G-CTTAAAAC
1 TGCTCCACTGCAACTTCAGGAAGACAAGAT-TTGCCGTCTTCGATC
** *
98164870 TGCTTTACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATT
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATC
* * * ** *
98164915 TGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTC-AGCC
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGA-TC
* ** * * * * * **
98164960 TACTCCACTAAAACTTTAGGGAGATAGGATGGTG--G-CTTAAATC
1 TGCTCCACTGCAACTTCAGGAAGACAAGAT-TTGCCGTCTTCGATC
* * * * *
98165003 TGCTTCACTGCAACTTCAGGAGGACAAGATTCGCCATCTTCGATT
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATC
* * **** *
98165048 TGCTCCACTGCAACTTCAGGGAGACAAGATCTATAATCTTCCG-GC
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTT-CGATC
* * * * * * **
98165093 TACTCCACTACAACTTTAGGAAGATAGGATGGTG--G-CTTAAATC
1 TGCTCCACTGCAACTTCAGGAAGACAAGAT-TTGCCGTCTTCGATC
* * * * *
98165136 TGCTTCACTGTAACTTCAAGAAGACAAGATTTGTCGTCTTCGATT
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATC
* * * ** *
98165181 TGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTC-AGCC
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGA-TC
* * * * * * * **
98165226 TACTCCACTACAACTTTAGGGAGATAGGATGGTG--G-CTTAAATC
1 TGCTCCACTGCAACTTCAGGAAGACAAGAT-TTGCCGTCTTCGATC
* * * * *
98165269 TGCTTCACTACAACTTCAGGAAGACTAGATTCGCCGTCCTCGATC
1 TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATC
* *
98165314 TGCTCCACTGCAACTTCAGGGAGGCAAGAT
1 TGCTCCACTGCAACTTCAGGAAGACAAGAT
98165344 CTGTAGAATT
Statistics
Matches: 396, Mismatches: 140, Indels: 52
0.67 0.24 0.09
Matches are distributed among these distances:
42 6 0.02
43 104 0.26
44 12 0.03
45 264 0.67
46 10 0.03
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (45 bp):
TGCTCCACTGCAACTTCAGGAAGACAAGATTTGCCGTCTTCGATC
Found at i:98169367 original size:19 final size:19
Alignment explanation
Indices: 98169340--98169386 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
98169330 ATAAAAGTTT
*
98169340 AATGCAAATG-ATGCAATG
1 AATGAAAATGCATGCAATG
*
98169358 CAATGAAAATGCATGGAATG
1 -AATGAAAATGCATGCAATG
98169378 AATGCAAAA
1 AATG-AAAA
98169387 GAAAGGAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.49, C:0.11, G:0.21, T:0.19
Consensus pattern (19 bp):
AATGAAAATGCATGCAATG
Found at i:98171493 original size:25 final size:27
Alignment explanation
Indices: 98171451--98171500 Score: 86
Period size: 25 Copynumber: 1.9 Consensus size: 27
98171441 GTAAAACAAT
98171451 TTAAAATAGAGTATATATATATAATTA
1 TTAAAATAGAGTATATATATATAATTA
98171478 TTAAAATAG-GTA-ATATATATAAT
1 TTAAAATAGAGTATATATATATAAT
98171501 AAATACTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 11 0.48
26 3 0.13
27 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (27 bp):
TTAAAATAGAGTATATATATATAATTA
Found at i:98171605 original size:21 final size:22
Alignment explanation
Indices: 98171579--98171619 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
98171569 AATAAGTTGT
98171579 ATAAGACAAATTT-AAATAAGA
1 ATAAGACAAATTTGAAATAAGA
*
98171600 ATAAGACAAGTTTGAAATAA
1 ATAAGACAAATTTGAAATAA
98171620 TATATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.59, C:0.05, G:0.12, T:0.24
Consensus pattern (22 bp):
ATAAGACAAATTTGAAATAAGA
Found at i:98171707 original size:28 final size:29
Alignment explanation
Indices: 98171658--98171733 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
98171648 TAAGAAGCTC
98171658 AAAAT-AATAATATGTAAAAAGAAA-TTT
1 AAAATAAATAATATGTAAAAAGAAATTTT
*
98171685 AAAATAAATAATAATGT-ATAAGAAATTTT
1 AAAATAAATAAT-ATGTAAAAAGAAATTTT
* * *
98171714 AAAGTAAATAACATATAAAA
1 AAAATAAATAATATGTAAAA
98171734 TAAGTTAAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 5 0.12
28 16 0.40
29 19 0.47
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (29 bp):
AAAATAAATAATATGTAAAAAGAAATTTT
Found at i:98171714 original size:29 final size:28
Alignment explanation
Indices: 98171658--98171839 Score: 94
Period size: 26 Copynumber: 6.8 Consensus size: 28
98171648 TAAGAAGCTC
98171658 AAAAT-AATAATATGTAAAAAGAAATTT
1 AAAATAAATAATATGTAAAAAGAAATTT
*
98171685 AAAATAAATAATAATGT-ATAAGAAATTTT
1 AAAATAAATAAT-ATGTAAAAAGAAA-TTT
* * * * *
98171714 AAAGTAAATAACATAT-AAAA-TAAGTT
1 AAAATAAATAATATGTAAAAAGAAATTT
** * ** * *
98171740 AAACCAAGTAATACAT-ATAA-AACTTT
1 AAAATAAATAATATGTAAAAAGAAATTT
* ** *
98171766 AAAATAGATAATATACACAAAG--ATTT
1 AAAATAAATAATATGTAAAAAGAAATTT
* **
98171792 AAAATAAATCATATGTGGAAA-AAATTT
1 AAAATAAATAATATGTAAAAAGAAATTT
*
98171819 AAAATAAATAATGTGTAAAAA
1 AAAATAAATAATATGTAAAAA
98171840 TAATTTTGAA
Statistics
Matches: 113, Mismatches: 35, Indels: 14
0.70 0.22 0.09
Matches are distributed among these distances:
26 47 0.42
27 30 0.27
28 19 0.17
29 17 0.15
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (28 bp):
AAAATAAATAATATGTAAAAAGAAATTT
Found at i:98171838 original size:25 final size:27
Alignment explanation
Indices: 98171788--98171839 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
98171778 ATACACAAAG
98171788 ATTTAAAATAAATCATATGTGGAAAAA
1 ATTTAAAATAAATCATATGTGGAAAAA
*
98171815 ATTTAAAATAAAT-A-ATGTGTAAAAA
1 ATTTAAAATAAATCATATGTGGAAAAA
98171840 TAATTTTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 10 0.42
26 1 0.04
27 13 0.54
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.31
Consensus pattern (27 bp):
ATTTAAAATAAATCATATGTGGAAAAA
Found at i:98171844 original size:27 final size:27
Alignment explanation
Indices: 98171788--98171845 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
98171778 ATACACAAAG
*
98171788 ATTTAAAATAAATCATATGTGGAAAAA
1 ATTTAAAATAAATCATATGTGAAAAAA
98171815 ATTTAAAATAAAT-A-ATGTGTAAAAATA
1 ATTTAAAATAAATCATATGTG-AAAAA-A
98171842 ATTT
1 ATTT
98171846 TGAAATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 5 0.18
26 5 0.18
27 18 0.64
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (27 bp):
ATTTAAAATAAATCATATGTGAAAAAA
Found at i:98172592 original size:18 final size:18
Alignment explanation
Indices: 98172553--98172592 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
98172543 ATGATGAATG
*
98172553 AATAAATAATAAAACAAT
1 AATAAATAATAAAACAAC
* *
98172571 AATAGATAATAAAATAAC
1 AATAAATAATAAAACAAC
98172589 AATA
1 AATA
98172593 CAAAGGCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.23
Consensus pattern (18 bp):
AATAAATAATAAAACAAC
Found at i:98174445 original size:44 final size:44
Alignment explanation
Indices: 98174323--98174467 Score: 172
Period size: 44 Copynumber: 3.4 Consensus size: 44
98174313 GGCTCCGCTA
98174323 CAACTTCAGGGAGATAAGACTTGT---TTTGATCTGCTCTACTG
1 CAACTTCAGGGAGATAAGACTTGTAACTTTGATCTGCTCTACTG
* ** * *
98174364 CAACTTCAGAGAGATAAGACTTGTAACTTCAACCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGTAACTTTGATCTGCTCTACTG
* * **
98174408 CATCTTCAGGGAGATAAG-GTTAGTGGCTTTGATCTGCTCTACTG
1 CAACTTCAGGGAGATAAGACTT-GTAACTTTGATCTGCTCTACTG
98174452 CAACTTCAGGGAGATA
1 CAACTTCAGGGAGATA
98174468 GGATCCGCCA
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
41 23 0.27
43 2 0.02
44 60 0.71
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGACTTGTAACTTTGATCTGCTCTACTG
Found at i:98174736 original size:91 final size:91
Alignment explanation
Indices: 98174581--98174746 Score: 217
Period size: 91 Copynumber: 1.8 Consensus size: 91
98174571 ATTTTCGGTC
* * *
98174581 TGCTCCACTGCAACTTCAGGGAAATTAGACTCGTAATTTCAACCCATTCCACTAAAACTTCAGGG
1 TGCTCCACTGCAACTTCAGGGAAATAAGACTCGTAACTTCAACCCACTCCACTAAAACTTCAGGG
98174646 AGATAAGGTTCATGGTTTCTTCAATT
66 AGATAAGGTTCATGGTTTCTTCAATT
* * * * ** *
98174672 TGCTCCACTGCAACTTCA-GGAAGATAAGATTTGTAACTTCAACCTACTCCATTGCATCTTCAGG
1 TGCTCCACTGCAACTTCAGGGAA-ATAAGACTCGTAACTTCAACCCACTCCACTAAAACTTCAGG
*
98174736 GAGATAGGGTT
65 GAGATAAGGTT
98174747 TTATAATCGA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 4 0.06
91 59 0.94
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (91 bp):
TGCTCCACTGCAACTTCAGGGAAATAAGACTCGTAACTTCAACCCACTCCACTAAAACTTCAGGG
AGATAAGGTTCATGGTTTCTTCAATT
Found at i:98186739 original size:22 final size:21
Alignment explanation
Indices: 98186705--98186749 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
98186695 TTATAAAAAG
98186705 AATATAAATAAATAAATGGTAA
1 AATATAAATAAATAAAT-GTAA
*
98186727 AATA-AAATAAAATCAATGTAA
1 AATATAAAT-AAATAAATGTAA
98186748 AA
1 AA
98186750 AGGAATAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (21 bp):
AATATAAATAAATAAATGTAA
Found at i:98190085 original size:6 final size:6
Alignment explanation
Indices: 98190076--98190114 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
98190066 CACCGTAAGG
*
98190076 GTAACA GTAACA GTAACA GTAACA GTAGCA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
98190115 GCGGTACACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:98190211 original size:57 final size:58
Alignment explanation
Indices: 98190090--98190212 Score: 135
Period size: 57 Copynumber: 2.1 Consensus size: 58
98190080 CAGTAACAGT
*
98190090 AACAGTAACAGTAGCAGTAACAGTAGCGGTACACAAAGTACCTCATCGAAACAAATCCGA
1 AACAGTAACAGTAACAGTAACAGTA-CGGTA-ACAAAGTACCTCATCGAAACAAATCCGA
* * * * *
98190150 AACAGTAACAGTAACAGTCACAGT-CAGGT-ACAGAGTACCTCTTCGGAAA-GAATCCGG
1 AACAGTAACAGTAACAGTAACAGTAC-GGTAACAAAGTACCTCATC-GAAACAAATCCGA
98190207 AACAGT
1 AACAGT
98190213 CACAATAGTC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
57 25 0.45
58 5 0.09
59 3 0.05
60 22 0.40
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (58 bp):
AACAGTAACAGTAACAGTAACAGTACGGTAACAAAGTACCTCATCGAAACAAATCCGA
Found at i:98203377 original size:20 final size:20
Alignment explanation
Indices: 98203352--98203400 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
98203342 CCGAAACCGT
98203352 AAAAAAAATTGAAAA-AGAAA
1 AAAAAAAATTGAAAACA-AAA
* *
98203372 AAAAAACACTGAAAACAAAA
1 AAAAAAAATTGAAAACAAAA
*
98203392 ATAAAAAAT
1 AAAAAAAAT
98203401 AAAAAAGGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.78, C:0.06, G:0.06, T:0.10
Consensus pattern (20 bp):
AAAAAAAATTGAAAACAAAA
Found at i:98203572 original size:19 final size:19
Alignment explanation
Indices: 98203536--98203586 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
98203526 AAAATAAAGG
*
98203536 GAAAGAAAGGAGAA-GAGAA
1 GAAAGAAA-AAGAAGGAGAA
98203555 GAAAGAAAAAGAAGGAGAA
1 GAAAGAAAAAGAAGGAGAA
*
98203574 G-GAG-AAAAGAAGG
1 GAAAGAAAAAGAAGG
98203587 TATAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 9 0.31
18 6 0.21
19 14 0.48
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (19 bp):
GAAAGAAAAAGAAGGAGAA
Found at i:98203747 original size:38 final size:39
Alignment explanation
Indices: 98203672--98203764 Score: 118
Period size: 38 Copynumber: 2.4 Consensus size: 39
98203662 TTTTTTGTTG
* ** **
98203672 TTAGTTATTAATATTGTTAGTAAAAAATTATTGTTATTA
1 TTAGTTATTATTATTGTTAGTAAAAAACCATAATTATTA
*
98203711 TT-GTTATTATTATTGTTAGTAAAAAACCATAATTATTG
1 TTAGTTATTATTATTGTTAGTAAAAAACCATAATTATTA
98203749 TTAGTTA-TATTATTGT
1 TTAGTTATTATTATTGT
98203765 AAAAAAAATC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 41 0.87
39 6 0.13
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.52
Consensus pattern (39 bp):
TTAGTTATTATTATTGTTAGTAAAAAACCATAATTATTA
Found at i:98208455 original size:17 final size:17
Alignment explanation
Indices: 98208433--98208471 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
98208423 CGGTAATAGT
*
98208433 ATGTTCCAATTTA-ATTA
1 ATGTT-CAAATTAGATTA
98208450 ATGTTCAAATTAGATTA
1 ATGTTCAAATTAGATTA
98208467 ATGTT
1 ATGTT
98208472 GTAATGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (17 bp):
ATGTTCAAATTAGATTA
Found at i:98209129 original size:72 final size:72
Alignment explanation
Indices: 98209012--98209148 Score: 229
Period size: 72 Copynumber: 1.9 Consensus size: 72
98209002 CCTGATGAGT
* *
98209012 CCGGGAAATTGTCATTGCCCGCCAAATTCGGATGATAAGAAGTATCAGCCGAATGTGAATGCGAT
1 CCGGGAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATGCGAT
98209077 GACGAGC
66 GACGAGC
* * *
98209084 CCGGGAAATAGTTATTGCCTGCCAAATCCGGATGATAAGAAGTATCAGTCGAATGTGAATGCGAT
1 CCGGGAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATGCGAT
98209149 CGTTCGGACT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (72 bp):
CCGGGAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATGCGAT
GACGAGC
Found at i:98211706 original size:11 final size:11
Alignment explanation
Indices: 98211690--98211719 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
98211680 TGAGTTTAGC
98211690 ATTTTATTCGT
1 ATTTTATTCGT
98211701 ATTTTATTCGT
1 ATTTTATTCGT
*
98211712 ATATTATT
1 ATTTTATT
98211720 TTTTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (11 bp):
ATTTTATTCGT
Found at i:98211760 original size:12 final size:13
Alignment explanation
Indices: 98211728--98211763 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
98211718 TTTTTTAAAA
98211728 TATATTATTTTCT
1 TATATTATTTTCT
*
98211741 TATTTTATTTT-T
1 TATATTATTTTCT
98211753 TATATTATTTT
1 TATATTATTTT
98211764 AGCAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TATATTATTTTCT
Found at i:98211903 original size:296 final size:290
Alignment explanation
Indices: 98210998--98212193 Score: 1331
Period size: 296 Copynumber: 4.1 Consensus size: 290
98210988 ATAAGTAAAA
* * * * *
98210998 TATTTTCGTATATTATTT-TTTATATTATTTTAGCA-AAAATATTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAA--G
* * * * *
98211061 TTTTTTTATATTTATTTAATAAATAACACTGATTTTGGCACTTTTTTCATATTTTTTATTTTCAT
64 TTTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATA----TT-TTTTCGT
* * * * * *
98211126 ATCTTATTTTTTAAAATATATTACTTTCGTATTATT-TTATTTTAAAACCTTTATTTTAGTACAT
124 ATATTATTTTTTAAAATATATTATTTTCGTATT-TTATT-TTTT-ATA---TTATTTTAGCAAAA
* * *
98211190 AATGTTTCAAATGTATTATTTAAATGTTTTTTATATT-TTTTAAATAAATAACCCTGATTTT-AG
183 AATGTTTCAAATGTATTAATTAAGTGTTTTTTATATTAATTT-AATAAATAACCCTGATTTTGA-
*
98211253 CACTTTATTCGTA--TTTTTTCGTA-A-T-TTTTTTAAAATATAT
246 CACTTTCTTCGTATTTTTTTTCGTATATTATTTTTTAAAATATAT
*
98211293 TATTATCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTT
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTT
* * *
98211358 TTTTTATATTTTTTTAATAAATAACCCTAATTTTAGTACTTTATTCGTATTTTTTCGTATATTAT
66 TTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTCGTATATTAT
98211423 TTTTTAAAATATATTATTTTCGTA---T-TTTTTTATATTATTTTAGCAAAAAATGTTTCAAATG
131 TTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATG
* *
98211484 TATTAGGTATATTATGTAAGTGTTTTTTTACACTAATTTAATAAATAACCCTGATTTTGACACTT
196 ---TA--T-TA--AT-TAAGTG-TTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTT
* *
98211549 TCTTCGTATTTTTTTT-GTATCTTATTTTTTAAAATACAT
251 TCTTCGTATTTTTTTTCGTATATTATTTTTTAAAATATAT
* *
98211588 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCGAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-
* * * *
98211653 TTTTTTATA-TTTTTCAATAAATAACCCTGAGTTTAGCATTTTATTCGTATTTTATTCGTATATT
65 TTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTT-TTCGTATATT
* ***
98211717 ATTTTTTAAAATATATTATTTTCTTATTTTATTTTTTATATTATTTTAGCAAAAAAAAATTCAAA
129 ATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAA
* * *
98211782 TGTATTACTTAAGTGTTTCTTTATATTAATTTACTAAATAACCCTGATTTTGATACTTTCTTCGT
194 TGTATTAATTAAGTGTTT-TTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGT
*
98211847 AATTTTTTATTTTCATATATTATTTTTTAAAATATAT
258 -A--TTTT-TTTTCGTATATTATTTTTTAAAATATAT
98211884 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-
98211949 TTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTCGTATATTA
65 TTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTCGTATATTA
* * *
98212014 TTTTTTAAAATATATTATTTT-G----GTA-----T-T-TTATTTTAGCATAAAATCTTTCAAAT
130 TTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAAT
* * * * * *
98212067 GTATTATTTAAGT-TTTTTTATATTAATTTAATAAATAA-CTTGACTTTGGCACTTTATTAGTAT
195 GTATTAATTAAGTGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTAT
* *** *
98212130 TTTTTTAT--TTTCGGATTTTTTTAAAATATAC
260 TTTTTT-TCGTATATTA-TTTTTTAAAATATAT
* *
98212161 TATTTTCATATTTTATTTTTTTATATTATTTTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTA
98212194 ACAAAAAACT
Statistics
Matches: 791, Mismatches: 76, Indels: 86
0.83 0.08 0.09
Matches are distributed among these distances:
276 3 0.00
277 48 0.06
278 5 0.01
280 1 0.00
281 41 0.05
282 21 0.03
283 3 0.00
284 38 0.05
285 5 0.01
286 5 0.01
287 2 0.00
289 1 0.00
290 43 0.05
291 92 0.12
292 9 0.01
293 6 0.01
294 7 0.01
295 180 0.23
296 183 0.23
297 64 0.08
299 1 0.00
300 33 0.04
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (290 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTT
TTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTCGTATATTAT
TTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATG
TATTAATTAAGTGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATT
TTTTTTCGTATATTATTTTTTAAAATATAT
Found at i:98212004 original size:130 final size:129
Alignment explanation
Indices: 98211867--98212134 Score: 301
Period size: 132 Copynumber: 2.1 Consensus size: 129
98211857 TTTCATATAT
** * * * * *
98211867 TATTTTTTAAAATA-TATTATTTT-CGTATTTTATTTCT-TTATATTATTTTAGTACATAATGTT
1 TATTTTTTAAAATATTATT-TTTTAAATATATTATTT-TGGTATATTATTTTAGCACAAAATCTT
** *
98211929 TCAAATGTATTATTTAAGTGTTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTAT
64 TCAAATGTATTATTTAAGT-TTTTTTATATTAATTTAATAAATAA-CCTGACTTTAGCACTTTAT
98211994 TCA-
127 T-AG
*** * *
98211997 TATTTTTTCGTATATTATTTTTTAAAATATATTATTTTGGTATTTTATTTTAGCATAAAATCTTT
1 TATTTTTTAAAATATTATTTTTT-AAATATATTATTTTGGTATATTATTTTAGCACAAAATCTTT
* *
98212062 CAAATGTATTATTTAAGTTTTTTTATATTAATTTAATAAATAACTTGACTTTGGCACTTTATTAG
65 CAAATGTATTATTTAAGTTTTTTTATATTAATTTAATAAATAACCTGACTTTAGCACTTTATTAG
98212127 TATTTTTT
1 TATTTTTT
98212135 TATTTTCGGA
Statistics
Matches: 116, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
129 1 0.01
130 40 0.34
131 28 0.24
132 47 0.41
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (129 bp):
TATTTTTTAAAATATTATTTTTTAAATATATTATTTTGGTATATTATTTTAGCACAAAATCTTTC
AAATGTATTATTTAAGTTTTTTTATATTAATTTAATAAATAACCTGACTTTAGCACTTTATTAG
Found at i:98212063 original size:132 final size:130
Alignment explanation
Indices: 98211909--98212179 Score: 341
Period size: 132 Copynumber: 2.1 Consensus size: 130
98211899 TTTCTTTATA
* * * **
98211909 TTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTTAATAAATAA
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGT-TTTTTTATATTAATTTAATAAATAA
* * *
98211974 CCCTGATTTTAGCACTTTATTCA-TATTTTTTCGTATATT-A-TTTTTTAAAATATATTATTTTG
65 -CCTGACTTTAGCACTTTATT-AGTATTTTTT--TATATTGATTTTTTTAAAATATACTATTTTC
*
98212036 GTATT
126 ATATT
*
98212041 TTATTTTAGCATAAAATCTTTCAAATGTATTATTTAAGTTTTTTTATATTAATTTAATAAATAAC
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGTTTTTTTATATTAATTTAATAAATAAC
* * *
98212106 TTGACTTTGGCACTTTATTAGTATTTTTTTATTTTCGGATTTTTTTAAAATATACTATTTTCATA
66 CTGACTTTAGCACTTTATTAGTATTTTTTTATATT--GATTTTTTTAAAATATACTATTTTCATA
98212171 TT
129 TT
98212173 TTATTTT
1 TTATTTT
98212180 TTTATATTAT
Statistics
Matches: 121, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
128 5 0.04
129 1 0.01
130 25 0.21
131 24 0.20
132 66 0.55
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (130 bp):
TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGTTTTTTTATATTAATTTAATAAATAAC
CTGACTTTAGCACTTTATTAGTATTTTTTTATATTGATTTTTTTAAAATATACTATTTTCATATT
Found at i:98212657 original size:14 final size:14
Alignment explanation
Indices: 98212638--98212700 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
98212628 AAAAAATTAC
98212638 CTTTTTCTTTCCTT
1 CTTTTTCTTTCCTT
* *
98212652 CTTTTTCCTTCCCT
1 CTTTTTCTTTCCTT
*
98212666 CTTCTTCTTCTCCTTCT
1 CTTTTTCTT-TCC-T-T
98212683 CTTTTTCTTT--TT
1 CTTTTTCTTTCCTT
98212695 CTTTTT
1 CTTTTT
98212701 TCTTCTCTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
12 7 0.17
13 1 0.03
14 19 0.47
15 3 0.08
16 1 0.03
17 9 0.22
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
CTTTTTCTTTCCTT
Found at i:98212671 original size:17 final size:18
Alignment explanation
Indices: 98212649--98212695 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
98212639 TTTTTCTTTC
98212649 CTTCTTTTTCCTTC-CCT
1 CTTCTTTTTCCTTCTCCT
*
98212666 CTTCTTCTTCTCCTTCTCTT
1 CTTCTT-TT-TCCTTCTCCT
*
98212686 TTTCTTTTTC
1 CTTCTTTTTC
98212696 TTTTTTCTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 8 0.32
20 7 0.28
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTCTTTTTCCTTCTCCT
Found at i:98212756 original size:3 final size:3
Alignment explanation
Indices: 98212737--98212796 Score: 52
Period size: 3 Copynumber: 20.0 Consensus size: 3
98212727 TCCTCCTCTC
* *
98212737 CTT CTT TTT CTTT CTT CTT CTT C-T CTT CTT -TC CTT CTT CTCT CTT
1 CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT-T CTT
* *
98212782 TTT CTT CTT TTT CTT
1 CTT CTT CTT CTT CTT
98212797 TGTTCCCGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
2 3 0.07
3 36 0.80
4 6 0.13
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
CTT
Found at i:98212758 original size:16 final size:17
Alignment explanation
Indices: 98212737--98212797 Score: 69
Period size: 16 Copynumber: 3.8 Consensus size: 17
98212727 TCCTCCTCTC
98212737 CTTCTT-TTTCTTTCTT
1 CTTCTTCTTTCTTTCTT
98212753 CTTCTTCTCTTCTTTC--
1 CTTCTTCT-TTCTTTCTT
*
98212769 CTTCTTCTCTCTTT-TT
1 CTTCTTCTTTCTTTCTT
98212785 CTTCTT-TTTCTTT
1 CTTCTTCTTTCTTT
98212798 GTTCCCGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 11 0.28
16 20 0.51
17 1 0.03
18 7 0.18
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
CTTCTTCTTTCTTTCTT
Found at i:98212765 original size:38 final size:38
Alignment explanation
Indices: 98212723--98212796 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
98212713 CGCCGTCCTC
98212723 CTTCTCCTCC-TCTCCT-TCTTTTTCTTTCTTCTTCTTCT
1 CTTCT-CTCCTTCTCCTCTCTTTTTC-TTCTTCTTCTTCT
* * *
98212761 CTTCTTTCCTTCTTCTCTCTTTTTCTTCTTTTTCTT
1 CTTCTCTCCTTCTCCTCTCTTTTTCTTCTTCTTCTT
98212797 TGTTCCCGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 3 0.10
38 20 0.65
39 8 0.26
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (38 bp):
CTTCTCTCCTTCTCCTCTCTTTTTCTTCTTCTTCTTCT
Found at i:98212964 original size:21 final size:20
Alignment explanation
Indices: 98212939--98212983 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
98212929 CCCTTTTCTA
*
98212939 TTTTTATTT-TTTTT-AGTGT
1 TTTTTTTTTCTTTTTCAGT-T
98212958 TTTTTTTTTCTTTTTCAGTT
1 TTTTTTTTTCTTTTTCAGTT
98212978 TTTTTT
1 TTTTTT
98212984 ACTGTTTCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 12 0.52
21 3 0.13
ACGTcount: A:0.07, C:0.04, G:0.07, T:0.82
Consensus pattern (20 bp):
TTTTTTTTTCTTTTTCAGTT
Found at i:98212967 original size:31 final size:31
Alignment explanation
Indices: 98212932--98212990 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
98212922 ACATGACCCC
* *
98212932 TTTTCTATTTTTA-TTTTTTTTAGTGTTTTTT
1 TTTTCT-TTTTCAGTTTTTTTTACTGTTTTTT
98212963 TTTTCTTTTTCAGTTTTTTTTACTGTTT
1 TTTTCTTTTTCAGTTTTTTTTACTGTTT
98212991 CGACTGTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.08, C:0.07, G:0.07, T:0.78
Consensus pattern (31 bp):
TTTTCTTTTTCAGTTTTTTTTACTGTTTTTT
Found at i:98219013 original size:117 final size:117
Alignment explanation
Indices: 98218804--98219025 Score: 367
Period size: 117 Copynumber: 1.9 Consensus size: 117
98218794 CGTAGGAGCC
* *
98218804 TTTTTCAGTAATTTTGTTGACAGTGCATCCTACTTGAAGCGTTTTGGACACTATTTGTTCAGAAA
1 TTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTGAAGCGTTTTGGACACTATTTATTCAGAAA
98218869 CGTCTTCTCAAAATTAGTTTTCTAGATACTAC-AGTAGAAAAAAAACATAGCT
66 CGTCTTCTCAAAATTAGTTTTCTAGATACTACTA-TAGAAAAAAAACATAGCT
*
98218921 TTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTGAAGCGTTTTTGACACTATTTATTCAGAAA
1 TTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTGAAGCGTTTTGGACACTATTTATTCAGAAA
* *
98218986 TGTCTTCTCAAAATTA-TTTTTTCAGATACTACTATAGAAA
66 CGTCTTCTCAAAATTAGTTTTCT-AGATACTACTATAGAAA
98219026 TGAAAAATAA
Statistics
Matches: 98, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
116 5 0.05
117 92 0.94
118 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (117 bp):
TTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTGAAGCGTTTTGGACACTATTTATTCAGAAA
CGTCTTCTCAAAATTAGTTTTCTAGATACTACTATAGAAAAAAAACATAGCT
Found at i:98223284 original size:34 final size:34
Alignment explanation
Indices: 98223241--98223305 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
98223231 TCTTATCAAC
*
98223241 AATTTTTCATCTTTCTACTCTACCAAGCAAAGAT
1 AATTTTTCATCTTTCCACTCTACCAAGCAAAGAT
98223275 AATTTTTCATCTTTCCACTCTACCAAGCAAA
1 AATTTTTCATCTTTCCACTCTACCAAGCAAA
98223306 AGCCTAAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (34 bp):
AATTTTTCATCTTTCCACTCTACCAAGCAAAGAT
Found at i:98232107 original size:17 final size:18
Alignment explanation
Indices: 98232073--98232118 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
98232063 CCGTTATGTC
98232073 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
98232088 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
98232105 CGCGACCGCGACCG
1 CGCGACCGCGACCG
98232119 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:98233323 original size:21 final size:19
Alignment explanation
Indices: 98233289--98233327 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
98233279 TAAAATATTT
98233289 AAAAATAAATATTTTAAAAA
1 AAAAATAAATA-TTTAAAAA
*
98233309 AAAAGATATATATTTAAAA
1 AAAA-ATAAATATTTAAAA
98233328 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
AAAAATAAATATTTAAAAA
Found at i:98236837 original size:66 final size:65
Alignment explanation
Indices: 98236726--98236881 Score: 172
Period size: 66 Copynumber: 2.4 Consensus size: 65
98236716 ATGGCCGAGG
* * * *
98236726 ACACGCCCGTGTGCCAGACCGTGTGAAAACTGGAGGGTATGCTGACTTATGCAACACGGCCAAGT
1 ACACGCCCGTGTGCTAGACCGTGTGAAAACTAGAGGGTATACTGACTTATACAACACGGCC-AGT
98236791 C
65 C
** * * *
98236792 ACACGCCCGTGTGCTAGACCGTGTGCCAATTA-AGGGGTATACTGACTTGTACCACACGGCCAGT
1 ACACGCCCGTGTGCTAGACCGTGTGAAAACTAGA-GGGTATACTGACTTATACAACACGGCCAGT
98236856 C
65 C
* *
98236857 ACACGACCATGTG-TGAGACCGTGTG
1 ACACGCCCGTGTGCT-AGACCGTGTG
98236882 GGGCATACTA
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
64 1 0.01
65 26 0.34
66 50 0.65
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (65 bp):
ACACGCCCGTGTGCTAGACCGTGTGAAAACTAGAGGGTATACTGACTTATACAACACGGCCAGTC
Found at i:98248914 original size:37 final size:38
Alignment explanation
Indices: 98248816--98248921 Score: 106
Period size: 37 Copynumber: 2.8 Consensus size: 38
98248806 ACACACTAGT
* * *
98248816 TTGGCACCCAGTGCCTTATCGAATAATTTGAAGTAATAAA
1 TTGGCACCCAGTGCCTCATCGAATAAATCGAAG--ATAAA
* * ** *
98248856 TTGTCACCCAATGTTTCATCGATTAAATCGAAG-TAAA
1 TTGGCACCCAGTGCCTCATCGAATAAATCGAAGATAAA
*
98248893 TTGGCACCCAGTGCCTGATCGAATAAATC
1 TTGGCACCCAGTGCCTCATCGAATAAATC
98248922 CAAAGTGATA
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
37 27 0.52
40 25 0.48
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (38 bp):
TTGGCACCCAGTGCCTCATCGAATAAATCGAAGATAAA
Found at i:98249859 original size:13 final size:13
Alignment explanation
Indices: 98249843--98249875 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
98249833 TCTTTCTCCC
98249843 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
98249856 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
98249869 TCTTTCT
1 T-TTTCT
98249876 GTTTTGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:98249869 original size:23 final size:22
Alignment explanation
Indices: 98249843--98249917 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 22
98249833 TCTTTCTCCC
98249843 TTTTCTTTCTTTTTTTTCTTTCT
1 TTTTCTTTCTTTTTTTTCTTT-T
**
98249866 TTTTCTTTCTGTTTTGTTT-TGGT
1 TTTTCTTTCT-TTTT-TTTCTTTT
*
98249889 TTTTCTATTC--CTTTTTCTTTT
1 TTTTCT-TTCTTTTTTTTCTTTT
98249910 TTTTCTTT
1 TTTTCTTT
98249918 TATTTATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
20 5 0.12
21 10 0.23
23 17 0.40
24 8 0.19
25 3 0.07
ACGTcount: A:0.01, C:0.15, G:0.05, T:0.79
Consensus pattern (22 bp):
TTTTCTTTCTTTTTTTTCTTTT
Found at i:98249918 original size:8 final size:9
Alignment explanation
Indices: 98249842--98249918 Score: 55
Period size: 9 Copynumber: 7.6 Consensus size: 9
98249832 TTCTTTCTCC
*
98249842 CTTTTCTTT
1 CTTTTTTTT
98249851 CTTTTTTTT
1 CTTTTTTTT
98249860 CTTTCTTTTT
1 CTTT-TTTTT
98249870 CTTTCTGTTTT
1 CTTT-T-TTTT
*
98249881 GTTTTGGTTTTT
1 -CTTT--TTTTT
98249893 CTATTCCTTTTT
1 CT-TT--TTTTT
98249905 CTTTTTTTT
1 CTTTTTTTT
98249914 CTTTT
1 CTTTT
98249919 ATTTATTCAT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
9 22 0.39
10 11 0.19
11 7 0.12
12 16 0.28
13 1 0.02
ACGTcount: A:0.01, C:0.16, G:0.05, T:0.78
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:98249983 original size:10 final size:10
Alignment explanation
Indices: 98249934--98249988 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
98249924 TTCATTTTAT
98249934 TATTATAATA
1 TATTATAATA
*
98249944 TAATATATATA
1 TATTATA-ATA
98249955 TACTTA-AATA
1 TA-TTATAATA
*
98249965 T-TAAGTAATA
1 TATTA-TAATA
98249975 TATTATAATA
1 TATTATAATA
98249985 TATT
1 TATT
98249989 TTAACTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
8 2 0.06
10 24 0.67
11 8 0.22
12 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (10 bp):
TATTATAATA
Found at i:98254092 original size:10 final size:9
Alignment explanation
Indices: 98254067--98254291 Score: 76
Period size: 10 Copynumber: 23.9 Consensus size: 9
98254057 CATTACAAAT
*
98254067 TTATATAAAC
1 TTATA-AAAA
98254077 TTATAAAAA
1 TTATAAAAA
98254086 TTCATAAAAA
1 TT-ATAAAAA
98254096 CTTATAAAAAAA
1 -TTAT--AAAAA
*
98254108 TTCTAATAAA
1 TTATAA-AAA
98254118 TTATAAAAA
1 TTATAAAAA
*
98254127 -GATAAAAA
1 TTATAAAAA
98254135 -TA-AAACATA
1 TTATAAA-A-A
*
98254144 TT-T-GAAA
1 TTATAAAAA
* *
98254151 TT-TGAAAT
1 TTATAAAAA
*
98254159 TTCTATAAAA
1 TTATA-AAAA
98254169 TTATAAAAA
1 TTATAAAAA
98254178 TTTATAATAAAA
1 -TTAT-A-AAAA
*
98254190 TTCATACAAAT
1 TT-ATA-AAAA
*
98254201 TTATAAATA
1 TTATAAAAA
98254210 TTATAATAAA
1 TTATAA-AAA
98254220 TTAT-AAAA
1 TTATAAAAA
*
98254228 -TATCAATAA
1 TTAT-AAAAA
**
98254237 TTATAAACC
1 TTATAAAAA
98254246 TTAT-AAAA
1 TTATAAAAA
98254254 TTCA-AAACAA
1 TT-ATAAA-AA
98254264 GTTATAATAAA
1 -TTATAA-AAA
98254275 TTATAAAATA
1 TTATAAAA-A
98254285 TTA-AAAA
1 TTATAAAA
98254292 TATATAATGA
Statistics
Matches: 166, Mismatches: 22, Indels: 55
0.68 0.09 0.23
Matches are distributed among these distances:
7 10 0.06
8 21 0.13
9 44 0.27
10 59 0.36
11 20 0.12
12 12 0.07
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (9 bp):
TTATAAAAA
Found at i:98254203 original size:22 final size:21
Alignment explanation
Indices: 98254155--98254206 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
98254145 TTGAAATTTG
*
98254155 AAATTTCT-ATAAAATTATAA
1 AAATTTATAATAAAATTATAA
*
98254175 AAATTTATAATAAAATTCATAC
1 AAATTTATAATAAAATT-ATAA
98254197 AAATTTATAA
1 AAATTTATAA
98254207 ATATTATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 7 0.25
21 8 0.29
22 13 0.46
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
AAATTTATAATAAAATTATAA
Found at i:98254758 original size:30 final size:30
Alignment explanation
Indices: 98254705--98254789 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 30
98254695 ATTTATTACG
* ** *
98254705 ATTTTATGATTTAAATGACTTTTTTAAAAA
1 ATTTTATAATTTATTTGAATTTTTTAAAAA
* * *
98254735 ATTTTATAATTTATTTGAATTTTTTTATAT
1 ATTTTATAATTTATTTGAATTTTTTAAAAA
* *
98254765 TTTTTATAAGTTATTATGAATTTTT
1 ATTTTATAATTTATT-TGAATTTTT
98254790 ATAAGTTATT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 36 0.80
31 9 0.20
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.60
Consensus pattern (30 bp):
ATTTTATAATTTATTTGAATTTTTTAAAAA
Found at i:98254807 original size:31 final size:30
Alignment explanation
Indices: 98254738--98254803 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
98254728 TTAAAAAATT
* * * *
98254738 TTATAATTTATTTGAATTTTTTTATATTTT
1 TTATAAGTTATTTGAATTTTTATATAGTTA
98254768 TTATAAGTTATTATGAATTTTTATA-AGTTA
1 TTATAAGTTATT-TGAATTTTTATATAGTTA
98254798 TTATAA
1 TTATAA
98254804 AGTTGTAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 20 0.65
31 11 0.35
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (30 bp):
TTATAAGTTATTTGAATTTTTATATAGTTA
Found at i:98255321 original size:8 final size:8
Alignment explanation
Indices: 98255308--98255335 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
98255298 AGCCTAAAAA
98255308 TTTTTTAT
1 TTTTTTAT
98255316 TTTTTTAT
1 TTTTTTAT
98255324 TTTTTTAT
1 TTTTTTAT
98255332 TTTT
1 TTTT
98255336 GTCAAGGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTAT
Found at i:98269259 original size:172 final size:172
Alignment explanation
Indices: 98268967--98269300 Score: 533
Period size: 172 Copynumber: 1.9 Consensus size: 172
98268957 CAAAGCACCC
* * *
98268967 AAGAACTTAGGCAAATATAAACACAAATTCCTAGATGTACAAAGCATTAGCAAGATACTCCAACA
1 AAGAACTTAGGCAAATATAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAGATACTCCAAAA
* * * *
98269032 TATTATAGTAAAGACTAGCGAGACATCAGACTAAAGAAGAAATTTGATAAGGTTAAAAGAAACAA
66 TATTATAGTAAAGACTAGAGAGACATCAGACCAAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
98269097 TTGAAGGGATAAAAATATAGAAGAATCAAAAATATACTAGAA
131 TTGAAGGGATAAAAATATAGAAGAATCAAAAATATACTAGAA
* * *
98269139 AAGAATTTAGGCAAATGTAAACACAAATCCCTAGAAGTACAAAGCATTAGGAAGATACTCCAAAA
1 AAGAACTTAGGCAAATATAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAGATACTCCAAAA
* * * *
98269204 TATTATAGTAGAGACTAGATAGACATCAGACCGAAGAAGAAACTTGACAAGGTTAAACGAAACAA
66 TATTATAGTAAAGACTAGAGAGACATCAGACCAAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
*
98269269 TTGAAGGGATAAAAATATAGGAGAATCAAAAA
131 TTGAAGGGATAAAAATATAGAAGAATCAAAAA
98269301 CCACAATTTA
Statistics
Matches: 147, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
172 147 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.20
Consensus pattern (172 bp):
AAGAACTTAGGCAAATATAAACACAAATCCCTAGAAGTACAAAGCATTAGCAAGATACTCCAAAA
TATTATAGTAAAGACTAGAGAGACATCAGACCAAAGAAGAAACTTGACAAGGTTAAAAGAAACAA
TTGAAGGGATAAAAATATAGAAGAATCAAAAATATACTAGAA
Found at i:98272994 original size:29 final size:30
Alignment explanation
Indices: 98272932--98272994 Score: 94
Period size: 29 Copynumber: 2.1 Consensus size: 30
98272922 AATTTATTTT
*
98272932 TTTGTTAATTTTCTTATTATTTTAAAGGCG
1 TTTGTTAATTTTCTTATTATTTTAAAGGCA
98272962 TTTGTTAATTTT-TTATTATTTTAGAA-GCA
1 TTTGTTAATTTTCTTATTATTTTA-AAGGCA
98272991 TTTG
1 TTTG
98272995 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.24, C:0.05, G:0.13, T:0.59
Consensus pattern (30 bp):
TTTGTTAATTTTCTTATTATTTTAAAGGCA
Found at i:98274241 original size:17 final size:17
Alignment explanation
Indices: 98274219--98274251 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
98274209 AATTTGAAAT
*
98274219 AATTTTATTTTTAATTA
1 AATTTTAATTTTAATTA
98274236 AATTTTAATTTTAATT
1 AATTTTAATTTTAATT
98274252 TTTTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
AATTTTAATTTTAATTA
Found at i:98274261 original size:23 final size:23
Alignment explanation
Indices: 98274218--98274268 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
98274208 AAATTTGAAA
98274218 TAATTTTATTTTTAATTAAAT-TT
1 TAATTTTATTTTT-ATTAAATATT
98274241 TAATTTTAATTTTT-TTAAAATATT
1 TAATTTT-ATTTTTATT-AAATATT
98274265 TAAT
1 TAAT
98274269 CTAAAGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 2 0.08
23 11 0.44
24 12 0.48
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TAATTTTATTTTTATTAAATATT
Found at i:98282287 original size:210 final size:210
Alignment explanation
Indices: 98281759--98282427 Score: 1177
Period size: 210 Copynumber: 3.2 Consensus size: 210
98281749 GTCCAACTAG
* * *
98281759 ATATTACTGAATCTGCTAATAAATGCTTCATCCGGATAAAGTATGCACTATTAAAATTAAATTAA
1 ATATTACTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAA
98281824 AATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTATTGTAATG
66 AATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTATTGTAATG
* *
98281889 AGAAACATGTTTTATTAGGTATAAGTATTTAAAATTTTGTTTTTGTAATGTGATACATGCGT--A
131 AGATACATGTTTTATTAGGTATAAGTATTTAAAATTTTGTTTTTTTAATGTGATACATGCGTAAA
98281952 -A-ATATATATAATC
196 TATATATATATAATC
* *
98281965 ATATTAGTGAATCTGCTAATACGTACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAA
1 ATATTACTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAA
*
98282030 AATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACAATTATTGTAATG
66 AATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTATTGTAATG
*
98282095 AGATACATGTTTTACTAGGTATAAGTATTTAAAATTTTGTTTTTTTAATGTGATACATGCGTAAA
131 AGATACATGTTTTATTAGGTATAAGTATTTAAAATTTTGTTTTTTTAATGTGATACATGCGTAAA
*
98282160 TATATATATATAATT
196 TATATATATATAATC
98282175 ATATTACTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAA
1 ATATTACTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAA
98282240 AATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTATTGTAATG
66 AATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTATTGTAATG
98282305 AGATACATGTTTTATTAGGTATAAGTATTTAAAATTTTGTTTTTGTT-ATGTGATACATGCGTAA
131 AGATACATGTTTTATTAGGTATAAGTATTTAAAATTTTGTTTTT-TTAATGTGATACATGCGTAA
98282369 ATATATATATATAATC
195 ATATATATATATAATC
* * *
98282385 ATATTAGTAAATCTGCTAATACATACTTCATCCGGATGAAGTA
1 ATATTACTGAATCTGCTAATACATACTTCATCCGGATAAAGTA
98282428 CGTATTAGCA
Statistics
Matches: 440, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
206 183 0.42
208 1 0.00
209 1 0.00
210 253 0.57
211 2 0.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (210 bp):
ATATTACTGAATCTGCTAATACATACTTCATCCGGATAAAGTATGCATTATTAAAATTAAATTAA
AATATTAAATAAGAAATAAAATTATAAAACAATATGTTATTTGGAAAATAACTATTATTGTAATG
AGATACATGTTTTATTAGGTATAAGTATTTAAAATTTTGTTTTTTTAATGTGATACATGCGTAAA
TATATATATATAATC
Found at i:98283592 original size:23 final size:24
Alignment explanation
Indices: 98283556--98283605 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
98283546 TCGATATTTT
98283556 ATTTTTCTAGAATTTCTATATA-A
1 ATTTTTCTAGAATTTCTATATAGA
* *
98283579 ATTTTTTTATAATTTCTATATAGA
1 ATTTTTCTAGAATTTCTATATAGA
98283603 ATT
1 ATT
98283606 AGAGTCAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (24 bp):
ATTTTTCTAGAATTTCTATATAGA
Found at i:98288146 original size:138 final size:138
Alignment explanation
Indices: 98287909--98288263 Score: 505
Period size: 138 Copynumber: 2.5 Consensus size: 138
98287899 ATGAAATTTG
* * * * ** *
98287909 TAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATAGTTGAAAGA
* ** *
98287974 TACCATAGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
66 TACCATGGCAACCTAATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
*
98288039 GAAATGAA
131 GAAAAGAA
*
98288047 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATAGTTGAAAGA
* *
98288112 TACCATGGCAACCTGATATGAAATGAATACGACCATGGTTGAAAGATACCATGGCAACGTGACAT
66 TACCATGGCAACCTAATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
98288177 GAAAAGAA
131 GAAAAGAA
98288185 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGACTAAGACCATAGTTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-G-A--A-TAAGACCATAGTTG
* *
98288249 AAAGACACAATGGCA
61 AAAGATACCATGGCA
98288264 TCATGTCAAA
Statistics
Matches: 195, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
137 5 0.03
138 161 0.83
139 1 0.01
141 1 0.01
142 27 0.14
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATAGTTGAAAGA
TACCATGGCAACCTAATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
GAAAAGAA
Found at i:98288221 original size:46 final size:46
Alignment explanation
Indices: 98287909--98288215 Score: 470
Period size: 46 Copynumber: 6.7 Consensus size: 46
98287899 ATGAAATTTG
* **
98287909 TAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
* * **
98287955 TAAGACCATGGTTGAAAGATACCATAGCAACCTAATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
*
98288001 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
* * *
98288047 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
*
98288093 TAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
* * * *
98288139 TACGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
98288185 TAAGACCATGGTTGAAAGATACCATGGCAAC
1 TAAGACCATGGTTGAAAGATACCATGGCAAC
98288216 ATGACAGAAA
Statistics
Matches: 241, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 241 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
Found at i:98288275 original size:92 final size:93
Alignment explanation
Indices: 98287909--98288263 Score: 433
Period size: 92 Copynumber: 3.8 Consensus size: 93
98287899 ATGAAATTTG
* * *
98287909 TAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATG--T-GTAAGACCATGGTTGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATACTAAGACCATGGTTGAA
* * * **
98287971 AGATACCATAGCAACCTAATATGAAATGTG
66 AGATACCATGGCAA-CT-ACATGAAAAGAA
*
98288001 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATG-A-A-TAAGACCATGGTTGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATACTAAGACCATGGTTGAA
98288063 AGATACCATGGCAACGTGACATGAAAAGAA
66 AGATACCATGGCAAC-T-ACATGAAAAGAA
* *
98288093 TAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAC---GACCATGGTTGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATACTAAGACCATGGTTGAA
98288155 AGATACCATGGCAACGTGACATGAAAAGAA
66 AGATACCATGGCAAC-T-ACATGAAAAGAA
* *
98288185 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGACTAAGACCATAGTTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGAAT-ACTAAGACCATGGTTG
* *
98288249 AAAGACACAATGGCA
64 AAAGATACCATGGCA
98288264 TCATGTCAAA
Statistics
Matches: 236, Mismatches: 16, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
91 2 0.01
92 207 0.88
93 3 0.01
94 1 0.00
96 23 0.10
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.20
Consensus pattern (93 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATACTAAGACCATGGTTGAA
AGATACCATGGCAACTACATGAAAAGAA
Found at i:98294472 original size:13 final size:15
Alignment explanation
Indices: 98294442--98294473 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
98294432 TCATTTCATG
98294442 CATTTCATCAATAAT
1 CATTTCATCAATAAT
98294457 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
98294470 CATT
1 CATT
98294474 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:98294705 original size:12 final size:12
Alignment explanation
Indices: 98294688--98294712 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98294678 CGATATCTCA
98294688 ATTTCAATTCAT
1 ATTTCAATTCAT
98294700 ATTTCAATTCAT
1 ATTTCAATTCAT
98294712 A
1 A
98294713 ATTTTACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTCAATTCAT
Found at i:98295130 original size:21 final size:21
Alignment explanation
Indices: 98295066--98295130 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
98295056 CAGGAGCAGT
*
98295066 ATACGACACATAAAGTGCTTG
1 ATACGACACATAAAGTGCCTG
* * * *
98295087 AAATGACACACAAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
98295108 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
98295129 AT
1 AT
98295131 TGGCAAAGCC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:98296357 original size:15 final size:16
Alignment explanation
Indices: 98296327--98296362 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
98296317 AATCTCCAAT
98296327 TTTCCCTTTATCTTTC
1 TTTCCCTTTATCTTTC
98296343 TTTCCCTTT-TCTTTC
1 TTTCCCTTTATCTTTC
*
98296358 CTTCC
1 TTTCC
98296363 TATTTTCGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTCCCTTTATCTTTC
Found at i:98296575 original size:3 final size:3
Alignment explanation
Indices: 98296567--98296605 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
98296557 TCTTTAATTT
*
98296567 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
98296606 CCAATGTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:98296641 original size:12 final size:11
Alignment explanation
Indices: 98296567--98296641 Score: 55
Period size: 12 Copynumber: 6.6 Consensus size: 11
98296557 TCTTTAATTT
98296567 ATAATAATAATA
1 ATAATAAT-ATA
98296579 ATAATAATAATA
1 ATAATAAT-ATA
*
98296591 ATAATAATAACA
1 ATAATAAT-ATA
** * *
98296603 ATACCAATGTC
1 ATAATAATATA
98296614 ATAAT-ATA-A
1 ATAATAATATA
98296623 ATAATAATATA
1 ATAATAATATA
98296634 ATACATAA
1 ATA-ATAA
98296642 ATATCTTTTA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
9 5 0.10
10 5 0.10
11 7 0.14
12 33 0.66
ACGTcount: A:0.61, C:0.07, G:0.01, T:0.31
Consensus pattern (11 bp):
ATAATAATATA
Found at i:98296914 original size:20 final size:18
Alignment explanation
Indices: 98296889--98296925 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
98296879 ACTATTTGAT
98296889 TTATTTCATAATATAATATC
1 TTATTT-ATAAT-TAATATC
98296909 TTATTTATAATTAATAT
1 TTATTTATAATTAATAT
98296926 AAATACAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTTATAATTAATATC
Found at i:98296960 original size:20 final size:20
Alignment explanation
Indices: 98296913--98296972 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 20
98296903 AATATCTTAT
98296913 TTATAATTAATATAA-ATACAATA
1 TTATAATTAA-ATAATATAC---A
98296936 TTATAA-TATAATAATATACA
1 TTATAATTA-AATAATATACA
98296956 TTATAATTAAATAATAT
1 TTATAATTAAATAATAT
98296973 TTAATTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
20 15 0.44
21 2 0.06
22 6 0.18
23 11 0.32
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TTATAATTAAATAATATACA
Found at i:98296969 original size:23 final size:22
Alignment explanation
Indices: 98296913--98296971 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
98296903 AATATCTTAT
98296913 TTATAATT-AAT-ATAAATACA
1 TTATAATTAAATAATAAATACA
* *
98296933 ATATTA-TAATATAATAATATACA
1 TTATAATTAA-ATAATAA-ATACA
98296956 TTATAATTAAATAATA
1 TTATAATTAAATAATA
98296972 TTTAATTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
19 1 0.03
20 5 0.17
21 2 0.07
22 4 0.13
23 15 0.50
24 3 0.10
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (22 bp):
TTATAATTAAATAATAAATACA
Found at i:98299402 original size:23 final size:24
Alignment explanation
Indices: 98299366--98299411 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
98299356 AACAAATTTA
*
98299366 AAAAATATAATAAATTAAATATACT
1 AAAAATAT-ATAAAATAAATATACT
98299391 AAAAATAT-TAAAATAAATATA
1 AAAAATATATAAAATAAATATA
98299412 TATTAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
25 8 0.40
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (24 bp):
AAAAATATATAAAATAAATATACT
Found at i:98299412 original size:25 final size:25
Alignment explanation
Indices: 98299366--98299419 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
98299356 AACAAATTTA
*
98299366 AAAAATATAATAAATTAAATATACT
1 AAAAATATAATAAATAAAATATACT
* *
98299391 AAAAATATTA-AAATAAATATATATT
1 AAAAATATAATAAATAAA-ATATACT
98299416 AAAA
1 AAAA
98299420 TAATTATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAAATATAATAAATAAAATATACT
Found at i:98299427 original size:14 final size:16
Alignment explanation
Indices: 98299395--98299429 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
98299385 TATACTAAAA
98299395 ATATTAAAATAAATAT
1 ATATTAAAATAAATAT
*
98299411 ATATTAAAATAATTAT
1 ATATTAAAATAAATAT
98299427 ATA
1 ATA
98299430 ATATCTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATTAAAATAAATAT
Found at i:98308534 original size:6 final size:6
Alignment explanation
Indices: 98308523--98308550 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
98308513 TATATTTCTG
98308523 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
98308551 TGAATTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:98318108 original size:15 final size:15
Alignment explanation
Indices: 98318075--98318134 Score: 61
Period size: 15 Copynumber: 3.9 Consensus size: 15
98318065 TAATATTAGT
*
98318075 ATATAAATAGAATAAAA
1 ATAT-AATA-AATAGAA
98318092 ATATAATAAATAGAA
1 ATATAATAAATAGAA
98318107 ATATAAT-AATAGTAA
1 ATATAATAAATAG-AA
*
98318122 AAAT-ATAAATAGA
1 ATATAATAAATAGA
98318135 TAATTAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
14 8 0.21
15 23 0.59
16 4 0.10
17 4 0.10
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
ATATAATAAATAGAA
Found at i:98318158 original size:29 final size:28
Alignment explanation
Indices: 98318094--98318158 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 28
98318084 GAATAAAAAT
98318094 ATAATAAATAGAAATATAATAATAGTAA
1 ATAATAAATAGAAATATAATAATAGTAA
*
98318122 AAATATAAATAGATAAT-TAA-AATTAGATAA
1 ATA-ATAAATAGA-AATATAATAA-TAG-TAA
98318152 ATAATAA
1 ATAATAA
98318159 TAGTATTAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
28 4 0.13
29 19 0.61
30 8 0.26
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (28 bp):
ATAATAAATAGAAATATAATAATAGTAA
Found at i:98326582 original size:46 final size:46
Alignment explanation
Indices: 98326522--98326748 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
98326512 TTTGACATGA
* * * * * *
98326522 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** *
98326568 TGCCATGGTATCTTTCAACCATGGTCTT-GTCATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
98326613 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
98326659 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
98326705 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
98326749 AGAGCACACT
Statistics
Matches: 167, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
44 4 0.02
45 37 0.22
46 126 0.75
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:98326677 original size:91 final size:92
Alignment explanation
Indices: 98326522--98326748 Score: 332
Period size: 91 Copynumber: 2.5 Consensus size: 92
98326512 TTTGACATGA
* * * * * *
98326522 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
** *
98326586 CCATGGTCTT-GTCATTTCATATCAAGT
65 CCATGGTCTTACACATTTCATATCAAGC
*
98326613 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
98326678 CATGGTCTTACACATTTCATATCAGGC
66 CATGGTCTTACACATTTCATATCAAGC
98326705 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
98326749 AGAGCACACT
Statistics
Matches: 123, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
90 4 0.03
91 62 0.50
92 57 0.46
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAAGC
Found at i:98330510 original size:82 final size:80
Alignment explanation
Indices: 98330379--98330577 Score: 283
Period size: 82 Copynumber: 2.5 Consensus size: 80
98330369 AACACACTGA
*
98330379 AACAAAGCCTGCTAGGCACAGAG-TCTGATATAAATCACCGGCACAAAGCTTGCTAGGCACAGAG
1 AACAAAGCCTGCTAGGCACAGAGCT-TGATATAAATCACCAGCACAAAGCTTGCTAGGCAC--AG
* *
98330443 CCTGATATAAATTATCAG
63 CCTGATATAAATCACCAG
* **
98330461 CACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCAGCATGAAGCTTGCTAGGCACAGCCT
1 AACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCAGCACAAAGCTTGCTAGGCACAGCCT
*
98330526 GATATAAATCACCGG
66 GATATAAATCACCAG
* *
98330541 AAAAAAGCCTGCTAGACACAGAGCTTGATATAAATCA
1 AACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCA
98330578 TCGGTATGAA
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
80 51 0.48
82 54 0.51
83 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (80 bp):
AACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCAGCACAAAGCTTGCTAGGCACAGCCT
GATATAAATCACCAG
Found at i:98330587 original size:80 final size:81
Alignment explanation
Indices: 98330377--98330589 Score: 286
Period size: 80 Copynumber: 2.6 Consensus size: 81
98330367 ATAACACACT
**
98330377 GAAACAAAGCCTGCTAGGCACAGAG-TCTGATATAAATCACCGGCACAAAGCTTGCTAGGCACAG
1 GAAA-AAAGCCTGCTAGGCACAGAGCT-TGATATAAATCACCGGCATGAAGCTTGCTAGGCACA-
* *
98330441 AGCCTGATATAAATTATCA
63 AGCCTGATATAAATCACCA
* * *
98330460 GCACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCAGCATGAAGCTTGCTAGGCAC-AGC
1 GAAAAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCGGCATGAAGCTTGCTAGGCACAAGC
*
98330524 CTGATATAAATCACCG
66 CTGATATAAATCACCA
* * *
98330540 GAAAAAAGCCTGCTAGACACAGAGCTTGATATAAATCATCGGTATGAAGC
1 GAAAAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCGGCATGAAGC
98330590 ATACTAGACT
Statistics
Matches: 115, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
80 60 0.52
82 52 0.45
83 3 0.03
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (81 bp):
GAAAAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCGGCATGAAGCTTGCTAGGCACAAGC
CTGATATAAATCACCA
Found at i:98330598 original size:41 final size:41
Alignment explanation
Indices: 98330380--98330577 Score: 249
Period size: 41 Copynumber: 4.9 Consensus size: 41
98330370 ACACACTGAA
98330380 ACAAAGCCTGCTAGGCACAGAG-TCTGATATAAATCACCGGC
1 ACAAAGCCTGCTAGGCACAGAGCT-TGATATAAATCACCGGC
* * * * *
98330421 ACAAAGCTTGCTAGGCACAGAGCCTGATATAAATTATCAGC
1 ACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCGGC
*
98330462 ACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCAGC
1 ACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCGGC
** * * *
98330503 ATGAAGCTTGCTAGGCAC--AGCCTGATATAAATCACCGGA
1 ACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCGGC
* *
98330542 AAAAAGCCTGCTAGACACAGAGCTTGATATAAATCA
1 ACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCA
98330578 TCGGTATGAA
Statistics
Matches: 134, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 32 0.24
41 102 0.76
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (41 bp):
ACAAAGCCTGCTAGGCACAGAGCTTGATATAAATCACCGGC
Found at i:98338468 original size:20 final size:20
Alignment explanation
Indices: 98338431--98338468 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
98338421 TGATGGGGAG
*
98338431 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
98338451 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
98338469 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:98340420 original size:46 final size:46
Alignment explanation
Indices: 98340368--98340512 Score: 263
Period size: 46 Copynumber: 3.2 Consensus size: 46
98340358 AGTGTGCTCT
* *
98340368 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
98340414 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
98340460 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
98340506 GTGATAT
1 CTGATAT
98340513 TCAGGTAATA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 96 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:98342899 original size:24 final size:24
Alignment explanation
Indices: 98342843--98342899 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
98342833 ATAAAAATGG
* *
98342843 TTTATAAATAAAAATAAAATAATAT
1 TTTA-AAATTAAAATAAAATAAAAT
*
98342868 TTT-TAATTAAAATAAAATAAAAT
1 TTTAAAATTAAAATAAAATAAAAT
98342891 TTTAAAATT
1 TTTAAAATT
98342900 TCTTGAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 20 0.74
24 4 0.15
25 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TTTAAAATTAAAATAAAATAAAAT
Found at i:98348462 original size:22 final size:20
Alignment explanation
Indices: 98348436--98348477 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
98348426 AATAAGAGAG
98348436 TTAAAAATAAAATATATATTAA
1 TTAAAAATAAAA-ATA-ATTAA
98348458 TTAAAAATAAAAATAATTAA
1 TTAAAAATAAAAATAATTAA
98348478 AAAATATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 3 0.15
22 12 0.60
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TTAAAAATAAAAATAATTAA
Found at i:98348466 original size:17 final size:17
Alignment explanation
Indices: 98348444--98348484 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
98348434 AGTTAAAAAT
*
98348444 AAAATATATATTAATTA
1 AAAATATATAATAATTA
*
98348461 AAAATA-AAAATAATTA
1 AAAATATATAATAATTA
98348477 AAAA-ATAT
1 AAAATATAT
98348485 CATCAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 1 0.05
16 13 0.65
17 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAATATATAATAATTA
Found at i:98348772 original size:142 final size:138
Alignment explanation
Indices: 98348620--98348984 Score: 387
Period size: 140 Copynumber: 2.6 Consensus size: 138
98348610 ATGAGTTAAT
* * * * * *
98348620 ATTAATTAAAAAAATTTAAAAAAAACTTAAAGCAACATGAAATAAAAATACAAATGTGAGTGGTA
1 ATTAATT--AAAAATTT--AAAAAGCTTAAAGCAACATAAAATAAAAATACAAATATAAGTAGAA
* * * *
98348685 GATG-AATTGAATTTGAGATTCAATG-ATGTAATTACAACTATCCAA-CATTTAACT-AAAGAAC
62 GA-GAAATTGAACTCGAGACTCAA-GAATGTAATTACAACTATCCAACCATCTAACTAAAAGAAC
98348746 TAATATGTTAAAAAA
125 TAATATGTT-AAAAA
* *
98348761 CATTAATTAAAAATTTAAAAAGCTTAAAGCAACGTAAAATAAAAAAATATAAATATAAGTAGAAG
1 -ATTAATTAAAAATTTAAAAAGCTTAAAGCAACATAAAAT--AAAAATACAAATATAAGTAGAAG
* * *
98348826 AGAAATTTAACTCGAGACTCAAGAATGTAATTGCAACTATCTAACCATCTAACTAAAAGAACTAA
63 AGAAATTGAACTCGAGACTCAAGAATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAA
98348891 TATGTTAAAAA
128 TATGTTAAAAA
* * * * * * *
98348902 TTTAATTAAAAATTTAAAAAGCTTAAAGTAACATAAAATAAAAAAATAAATATGAGTAGGAGAGG
1 ATTAATTAAAAATTTAAAAAGCTTAAAGCAACATAAAATAAAAATACAAATATAAGTAGAAGAGA
** *
98348967 AATCAAACTCAAGACTCA
66 AATTGAACTCGAGACTCA
98348985 TAAATAAAAA
Statistics
Matches: 192, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
138 58 0.30
139 2 0.01
140 96 0.50
141 13 0.07
142 23 0.12
ACGTcount: A:0.53, C:0.10, G:0.11, T:0.26
Consensus pattern (138 bp):
ATTAATTAAAAATTTAAAAAGCTTAAAGCAACATAAAATAAAAATACAAATATAAGTAGAAGAGA
AATTGAACTCGAGACTCAAGAATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAATAT
GTTAAAAA
Found at i:98348865 original size:140 final size:138
Alignment explanation
Indices: 98348710--98348984 Score: 392
Period size: 140 Copynumber: 2.0 Consensus size: 138
98348700 AGATTCAATG
*
98348710 ATGTAATTACAACTATCCAA-CATTTAACT-AAAGAACTAATATGTTAAAAAACATTAATTAAAA
1 ATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAATATGTT-AAAAA-ATTAATTAAAA
* **
98348773 ATTTAAAAAGCTTAAAGCAACGTAAAATAAAAAAATATAAATATAAGTAGAAGAGAAATTTAACT
64 ATTTAAAAAGCTTAAAGCAACATAAAAT-AAAAAA-ATAAATATAAGTAGAAGAGAAATCAAACT
*
98348838 CGAGACTCAAGA
127 CAAGACTCAAGA
* * *
98348850 ATGTAATTGCAACTATCTAACCATCTAACTAAAAGAACTAATATGTTAAAAATTTAATTAAAAAT
1 ATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAATATGTTAAAAAATTAATTAAAAAT
* * * *
98348915 TTAAAAAGCTTAAAGTAACATAAAATAAAAAAATAAATATGAGTAGGAGAGGAATCAAACTCAAG
66 TTAAAAAGCTTAAAGCAACATAAAATAAAAAAATAAATATAAGTAGAAGAGAAATCAAACTCAAG
98348980 ACTCA
131 ACTCA
98348985 TAAATAAAAA
Statistics
Matches: 121, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
138 32 0.26
139 6 0.05
140 54 0.45
141 13 0.11
142 16 0.13
ACGTcount: A:0.53, C:0.11, G:0.10, T:0.26
Consensus pattern (138 bp):
ATGTAATTACAACTATCCAACCATCTAACTAAAAGAACTAATATGTTAAAAAATTAATTAAAAAT
TTAAAAAGCTTAAAGCAACATAAAATAAAAAAATAAATATAAGTAGAAGAGAAATCAAACTCAAG
ACTCAAGA
Found at i:98350915 original size:14 final size:14
Alignment explanation
Indices: 98350896--98350933 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
98350886 ATAAAAGTAT
98350896 AATAAAATATTAAA
1 AATAAAATATTAAA
98350910 AAT-AAATATTAAA
1 AATAAAATATTAAA
*
98350923 AA-AACATATTA
1 AATAAAATATTA
98350934 TTTTTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 19 0.86
14 3 0.14
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (14 bp):
AATAAAATATTAAA
Found at i:98352360 original size:21 final size:20
Alignment explanation
Indices: 98352321--98352367 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
98352311 TTTATTTTAT
* *
98352321 TTATTTAATGTAAATAATAA
1 TTATTTAAAGTAAAAAATAA
98352341 TTATTTAAAGATAAAAAATAA
1 TTATTTAAAG-TAAAAAATAA
98352362 TTATTT
1 TTATTT
98352368 TATTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TTATTTAAAGTAAAAAATAA
Found at i:98358102 original size:9 final size:9
Alignment explanation
Indices: 98358068--98358094 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
98358058 AATTTATTAT
98358068 TATTTTTAA
1 TATTTTTAA
98358077 TATTTTTAA
1 TATTTTTAA
98358086 TATTTTTAA
1 TATTTTTAA
98358095 ATTATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TATTTTTAA
Found at i:98363185 original size:3 final size:3
Alignment explanation
Indices: 98363179--98363220 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
98363169 AGAAGATGCT
*
98363179 AAG AAG AAG AAG AAG AAG AAG AAG AAG GAG AA- AAG AA- AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
98363221 AATATTATGC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:98365094 original size:15 final size:15
Alignment explanation
Indices: 98365058--98365105 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
98365048 GATATTTTAT
* *
98365058 AAAAAAAATAAAATA
1 AAAAAAAATTATATA
*
98365073 TAAAAAAATTATATA
1 AAAAAAAATTATATA
*
98365088 AAAAAAAGTTAT-TA
1 AAAAAAAATTATATA
98365102 AAAA
1 AAAA
98365106 TTATCTACAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 6 0.21
15 22 0.79
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (15 bp):
AAAAAAAATTATATA
Done.