Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 298 of 332
Found at i:98871884 original size:3 final size:3
Alignment explanation
Indices: 98871865--98872012 Score: 75
Period size: 3 Copynumber: 48.3 Consensus size: 3
98871855 TTAGTTAATT
* * * *
98871865 TTA TTA TTT TTA CTA TTA TTA TTA TTA TAA ATA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
98871912 TTG TTA TTA TTA TTTA CATG TTA TTA TTTC TTT TTC TT- TTA TTA TGGTC
1 TTA TTA TTA TTA -TTA -TTA TTA TTA -TTA TTA TTA TTA TTA TTA T--TA
** * * * * *
98871961 TTA TTA TTA TTA CCA TTA TTA ATA TTT TTA TTT TTA TTT TTA TTT TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
98872009 TTA T
1 TTA T
98872013 CATCTTATTT
Statistics
Matches: 106, Mismatches: 33, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
2 4 0.04
3 94 0.89
4 6 0.06
5 2 0.02
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:98871936 original size:32 final size:32
Alignment explanation
Indices: 98871866--98871939 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
98871856 TAGTTAATTT
* *
98871866 TATTATTTTTACTATTATTATTATTATAAATA
1 TATTATTATTACTATTATTATTATTATAAACA
* * **
98871898 TATTATTATTATTATTGTTATTATTATTTACA
1 TATTATTATTACTATTATTATTATTATAAACA
*
98871930 TGTTATTATT
1 TATTATTATT
98871940 TCTTTTTCTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (32 bp):
TATTATTATTACTATTATTATTATTATAAACA
Found at i:98872059 original size:20 final size:16
Alignment explanation
Indices: 98872036--98872093 Score: 66
Period size: 14 Copynumber: 3.5 Consensus size: 16
98872026 TACTATTGTC
98872036 ATTTTTGTACTATTATTATT
1 ATTTTT-TA-TATT-TTA-T
98872056 ATTTTTTATATTTTAT
1 ATTTTTTATATTTTAT
98872072 A--TTTTATATTTTAT
1 ATTTTTTATATTTTAT
98872086 ATTTTTTA
1 ATTTTTTA
98872094 CTACTATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 14 0.39
16 7 0.19
17 3 0.08
18 4 0.11
19 2 0.06
20 6 0.17
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (16 bp):
ATTTTTTATATTTTAT
Found at i:98872069 original size:7 final size:7
Alignment explanation
Indices: 98872049--98872090 Score: 66
Period size: 7 Copynumber: 5.9 Consensus size: 7
98872039 TTTGTACTAT
98872049 TATTATTA
1 TATT-TTA
*
98872057 TTTTTTA
1 TATTTTA
98872064 TATTTTA
1 TATTTTA
98872071 TATTTTA
1 TATTTTA
98872078 TATTTTA
1 TATTTTA
98872085 TATTTT
1 TATTTT
98872091 TTACTACTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
7 29 0.91
8 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TATTTTA
Found at i:98872213 original size:16 final size:15
Alignment explanation
Indices: 98872194--98872235 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
98872184 TTATATTTAC
*
98872194 TATTGTTATTATTATT
1 TATTGTTATTACTA-T
98872210 TATTGTTATTACTAT
1 TATTGTTATTACTAT
*
98872225 TATTCTTATTA
1 TATTGTTATTA
98872236 ATGTAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (15 bp):
TATTGTTATTACTAT
Found at i:98872247 original size:3 final size:3
Alignment explanation
Indices: 98872159--98872235 Score: 50
Period size: 3 Copynumber: 25.3 Consensus size: 3
98872149 TTTTGCTATC
* * * *
98872159 ATT ATT ATT ACT -TT ATTT ATT ATC ATT A-T ATTT ACT ATT GTT ATT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
* * *
98872204 ATT ATTT ATT GTT ATT ACT ATT ATT CTT ATT A
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT A
98872236 ATGTAATTAT
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
2 3 0.05
3 44 0.80
4 8 0.15
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:98872481 original size:15 final size:15
Alignment explanation
Indices: 98872463--98872500 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
98872453 CCTCTTTAAC
98872463 TATTATTACTATTAT
1 TATTATTACTATTAT
*
98872478 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
98872493 AATTATTA
1 TATTATTA
98872501 TTAATTTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:98873762 original size:23 final size:24
Alignment explanation
Indices: 98873636--98873763 Score: 70
Period size: 23 Copynumber: 5.5 Consensus size: 24
98873626 TTTTTTTTGT
* *
98873636 TATTA-TTATATTTCTTAATATTA
1 TATTATTTATATCTCTTAATACTA
* * *
98873659 TATTATATATAT-TCTT-TTAATA
1 TATTATTTATATCTCTTAATACTA
** * *
98873681 TATTAGGTATAT-TCTAAATTCTA
1 TATTATTTATATCTCTTAATACTA
** * *
98873704 TATTAAGTATATATATT-ATACTA
1 TATTATTTATATCTCTTAATACTA
*
98873727 TTTTATGTGTATATCT-TTAATACTA
1 TATTAT-T-TATATCTCTTAATACTA
98873752 TATTATTTATAT
1 TATTATTTATAT
98873764 TTTTTTTTTC
Statistics
Matches: 81, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
22 17 0.21
23 37 0.46
24 10 0.12
25 17 0.21
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.55
Consensus pattern (24 bp):
TATTATTTATATCTCTTAATACTA
Found at i:98873810 original size:22 final size:22
Alignment explanation
Indices: 98873780--98873821 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
98873770 TTTCTACATG
*
98873780 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
98873802 TTATATTATGTATGTATTTT
1 TTATATTATGTATATATTTT
98873822 TTACACTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:98873838 original size:25 final size:24
Alignment explanation
Indices: 98873786--98873872 Score: 61
Period size: 24 Copynumber: 3.5 Consensus size: 24
98873776 CATGTTATCT
*
98873786 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
*
98873812 TATGTATTTTTTACACTATATTGTG
1 TATGTATTTTTTA-ACTATATTATG
** * *
98873837 TACATA-TTTTTAA-TATTATCACG
1 TATGTATTTTTTAACTA-TATTATG
*
98873860 TATTTATTTTTTA
1 TATGTATTTTTTA
98873873 TATATGTACA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
22 2 0.04
23 9 0.18
24 17 0.35
25 14 0.29
26 7 0.14
ACGTcount: A:0.30, C:0.06, G:0.07, T:0.57
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:98874026 original size:16 final size:15
Alignment explanation
Indices: 98874002--98874049 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
98873992 TAATTATTAT
*
98874002 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
98874018 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
98874033 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
98874049 T
1 T
98874050 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:98874037 original size:7 final size:8
Alignment explanation
Indices: 98874002--98874053 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
98873992 TAATTATTAT
*
98874002 TATTCTAA
1 TATTTTAA
*
98874010 TATTTTGA
1 TATTTTAA
98874018 TATTTTAA
1 TATTTTAA
98874026 TATTTT-A
1 TATTTTAA
98874033 TATTTTATA
1 TATTTTA-A
* *
98874042 TACTTTAT
1 TATTTTAA
98874050 TATT
1 TATT
98874054 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:98883110 original size:6 final size:6
Alignment explanation
Indices: 98883078--98883118 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
98883068 AGGACATCTT
98883078 AAAA-A AAAAGA GAAAAG- AAAAGAA AAAAGA AAAAGA AAAAG
1 AAAAGA AAAAGA -AAAAGA AAAAG-A AAAAGA AAAAGA AAAAG
98883119 TGAGAGGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
5 9 0.28
6 13 0.41
7 10 0.31
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:98883118 original size:19 final size:19
Alignment explanation
Indices: 98883081--98883116 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
98883071 ACATCTTAAA
98883081 AAAAAAGAGAAAAGAAAAG
1 AAAAAAGAGAAAAGAAAAG
98883100 AAAAAAGA-AAAAGAAAA
1 AAAAAAGAGAAAAGAAAA
98883117 AGTGAGAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (19 bp):
AAAAAAGAGAAAAGAAAAG
Found at i:98884183 original size:73 final size:73
Alignment explanation
Indices: 98884063--98884229 Score: 244
Period size: 73 Copynumber: 2.3 Consensus size: 73
98884053 ATTTCCATTT
*
98884063 TTTCAATTTATGCTTTTCAAAAAATCAACTCATAGTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTC-AAAAATCAACTCATAGTGCGAGAGGTGAGCTGAGCCTCAGGACACG
*
98884128 CTGAGGTAA
65 CCGAGGTAA
* * *
98884137 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATAGTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
*
98884202 CGAGGTAT
66 CGAGGTAA
* * *
98884210 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
98884230 TTTCTGCTTT
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 66 0.79
74 18 0.21
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATAGTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
CGAGGTAA
Found at i:98884244 original size:13 final size:13
Alignment explanation
Indices: 98884210--98884245 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
98884200 GCCGAGGTAT
*
98884210 TTTTAATTTCTGT
1 TTTTAATTTCTGC
98884223 TTTTCAATTTCTGC
1 TTTT-AATTTCTGC
98884237 TTTTAATTT
1 TTTTAATTT
98884246 ATGTTTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67
Consensus pattern (13 bp):
TTTTAATTTCTGC
Found at i:98884253 original size:13 final size:13
Alignment explanation
Indices: 98884209--98884253 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
98884199 CGCCGAGGTA
98884209 TTTTTAATTTCTG
1 TTTTTAATTTCTG
98884222 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
* *
98884236 CTTTTAATTTATG
1 TTTTTAATTTCTG
98884249 TTTTT
1 TTTTT
98884254 CAAAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.16, C:0.09, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:98884276 original size:100 final size:101
Alignment explanation
Indices: 98884140--98884519 Score: 421
Period size: 100 Copynumber: 3.9 Consensus size: 101
98884130 GAGGTAATTT
* * *
98884140 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGA
1 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
98884205 GGTATTTTTAATTTCTGTTTTTCAATTTCTG-CTTT
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
* * *
98884240 TAATTTATGTTTTTCAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
1 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
98884305 GGTATTTTCAATTTTTGTTTTTCAATTTTTGCCTTA
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
* * * *
98884341 CAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGA
1 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* * *
98884404 GGTATTTTCAATTTTCAT-TTTTTTAATTTATG--TTT
66 GGTATTTTCAA-TTTC-TGTTTTTCAATTTCTGCCTTA
** * * * *
98884439 CAA---A------AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGA
1 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
98884495 GGTATTTTCAATTTCTGTATTTCAA
66 GGTATTTTCAATTTCTGTTTTTCAA
98884520 AAAAATCAGC
Statistics
Matches: 244, Mismatches: 30, Indels: 22
0.82 0.10 0.07
Matches are distributed among these distances:
89 1 0.00
90 10 0.04
91 55 0.23
98 5 0.02
99 56 0.23
100 102 0.42
101 15 0.06
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (101 bp):
CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
Found at i:98884328 original size:14 final size:14
Alignment explanation
Indices: 98884309--98884335 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
98884299 CGCTGAGGTA
98884309 TTTTCAATTTTTGT
1 TTTTCAATTTTTGT
98884323 TTTTCAATTTTTG
1 TTTTCAATTTTTG
98884336 CCTTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTTCAATTTTTGT
Found at i:98884548 original size:75 final size:74
Alignment explanation
Indices: 98884443--98885197 Score: 678
Period size: 75 Copynumber: 10.0 Consensus size: 74
98884433 ATGTTTCAAA
*
98884443 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
98884508 TCTGTATTTC
66 TCTGT-TTTC
*
98884518 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
98884583 TCTGTCTTTC
66 TCTGT-TTTC
* * * * *
98884593 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
98884656 TCTGTTCTTC
66 TCTGTT-TTC
***** * * * * ** * * ***
98884666 AATTTCTGTTTTTCAAAAACATCA-ACT-C-ATATTGCGAGAGGTGAG--TTGAGCCTCAGGACA
1 AA-----AAAAATC---AAC-TCATATTGCGAGA--G-GTGAGTTGAGCCTCAAGACAC-GTTGA
* ** ** *
98884726 CGCTGAGGTAATTTCAATTTTTGTTTGTC
53 -GGT-A--TTTTCA--ATTTCTGTTT-TC
* * * *
98884755 --AAAACTCAACTCATATTGGGAGAAGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
98884818 TCTGTTTTTC
66 TCTG-TTTTC
* * * *
98884828 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
98884893 TTTGTTTGTC
66 TCTGTTT-TC
98884903 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
98884967 TCTGTCTTTC
66 TCTGT-TTTC
* * * *
98884977 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
98885040 TTTGTTTGTC
66 TCTGTTT-TC
* * *
98885050 --AAAAATCAACTCATATTGTGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
98885113 TCTGTCTTTC
66 TCTGT-TTTC
* * * * *
98885123 AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC--TAAGGTGTTTTCCATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
98885186 TCTGTTCTTC
66 TCTGTT-TTC
98885196 AA
1 AA
98885198 TTTCTGTGTT
Statistics
Matches: 549, Mismatches: 90, Indels: 84
0.76 0.12 0.12
Matches are distributed among these distances:
71 37 0.07
72 4 0.01
73 105 0.19
74 74 0.13
75 259 0.47
77 1 0.00
78 15 0.03
79 9 0.02
80 8 0.01
81 7 0.01
82 13 0.02
83 2 0.00
84 2 0.00
87 2 0.00
88 1 0.00
89 10 0.02
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
TCTGTTTTC
Found at i:98885117 original size:146 final size:147
Alignment explanation
Indices: 98884663--98885169 Score: 827
Period size: 146 Copynumber: 3.4 Consensus size: 147
98884653 ATTTCTGTTC
* * *
98884663 TTCAATTTCTGTTTTTCAAAAACATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-GACACG
* * *
98884728 CTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGGGAGAAGTGAGTTGAGCCTC
65 CTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
98884793 AAGACATGTTGAGGTATT
130 AAGACACGTTGAGGTATT
* * *
98884811 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACG
1 TTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA-GACACG
98884876 CTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65 CTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
98884941 CAAGACACGTTGAGGTATT
129 CAAGACACGTTGAGGTATT
* *
98884960 TTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGC
1 TTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGC
* *
98885024 TGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGTGAGAGGTAAGTTGAGCCTCA
66 TGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
98885089 AGACACATTGAGGTATT
131 AGACACGTTGAGGTATT
*
98885106 TTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
1 TTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-AGACAC
98885170 TAAGGTGTTT
Statistics
Matches: 341, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
146 110 0.32
147 32 0.09
148 93 0.27
149 106 0.31
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (147 bp):
TTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGC
TGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTATT
Found at i:98885267 original size:384 final size:384
Alignment explanation
Indices: 98884356--98885289 Score: 1100
Period size: 384 Copynumber: 2.4 Consensus size: 384
98884346 TCTGCTTTTC
* *
98884356 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAATTTTCA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA--CT-AGGTGTTTTCAA-TTTC-
* * **
98884421 TTTTTTTAA-TT-TATGTTTCAAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
61 -TTTTTCAATTTCTGTGTTTC---AAAAAAATCAACTCATATTGCGAGTGGTGAGTTGAGCCTCA
* *
98884484 AGACACGTTGAGGTATTTTCAATTTCTGTATTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAG
122 AGACACGTTGAGGTATTTTCAATTTATGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
98884549 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGC
185 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGC
* *
98884614 GAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTTTTT
250 GAGAGGTGAGTTGAACCTCAAGACGCTGAGGTG--TT-CA----T-ATCTTCAATTTCTGTTTGT
* * *
98884679 CAAAAACATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
307 CAAAAACATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACACTGAGGTAATTTCAAT
*
98884744 TTTTGTTTGTCAA
372 TTCTGTTTGTCAA
* * * * * ** *
98884757 AACTCAACTCATATTGGGAGAAGTGAGTTGAGCCTCAAG--AC-A--TG--TT-GAGGT-ATTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACTAGGTGTTTTCAATTTCTTTTT
* * *
98884813 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGA-TAGGTGAGTTGAGCCTCAGGACACGC
66 CAATTTCTGTGTTTCAAAAAAATCAACTCATATTGCGAGT-GGTGAGTTGAGCCTCAAGACACGT
* *
98884877 TGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
130 TGAGGTATTTTCAATTTATGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
98884942 AAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGA
194 AAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGA
*
98885007 GTTGAACCTCAAGACGCTGA-G-G-T-A-AT-TTCAATTTTTGTTTGTC-AAAA-ATCAACTCAT
259 GTTGAACCTCAAGACGCTGAGGTGTTCATATCTTCAATTTCTGTTTGTCAAAAACATCAACTCAT
* * *
98885064 ATTGTGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGTCTT-TCAAAA
324 ATTGCGAGAGGTAAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTCTGT-TTGTC--AA
* *
98885127 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACTAAGGTGTTTTCCATTTCTGTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACT-AGGTGTTTTCAATTTCT-TT
** * **
98885192 CTTCAATTTCTGTGTTTCAAAAAAATCTGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCAC
64 -TTCAATTTCTGTGTTTCAAAAAAATCAACTCATATTGCGAGTGGTGAGTTGAGCC-TCA-AGAC
*
98885257 ACGTTGAGGTATTTTCAAATTATGTTTTTCAAA
126 ACGTTGAGGTATTTTCAATTTATG-TTTTCAAA
98885290 TTTTGTCTTT
Statistics
Matches: 461, Mismatches: 49, Indels: 63
0.80 0.09 0.11
Matches are distributed among these distances:
368 59 0.13
369 6 0.01
370 51 0.11
371 1 0.00
372 2 0.00
374 1 0.00
376 2 0.00
377 1 0.00
378 2 0.00
379 3 0.01
381 2 0.00
382 51 0.11
383 4 0.01
384 152 0.33
385 68 0.15
386 6 0.01
387 2 0.00
388 6 0.01
389 1 0.00
390 1 0.00
391 2 0.00
393 1 0.00
395 1 0.00
397 1 0.00
399 1 0.00
401 34 0.07
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (384 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACTAGGTGTTTTCAATTTCTTTTT
CAATTTCTGTGTTTCAAAAAAATCAACTCATATTGCGAGTGGTGAGTTGAGCCTCAAGACACGTT
GAGGTATTTTCAATTTATGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGT
TGAACCTCAAGACGCTGAGGTGTTCATATCTTCAATTTCTGTTTGTCAAAAACATCAACTCATAT
TGCGAGAGGTAAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTCTGTTTGTCAA
Found at i:98885320 original size:92 final size:90
Alignment explanation
Indices: 98885104--98885686 Score: 403
Period size: 87 Copynumber: 6.5 Consensus size: 90
98885094 CATTGAGGTA
* * *
98885104 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC-TCA---A
1 TTTTCAATTTATGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCACTCA
* * * * * *
98885165 GACACTAAGGTGTTTTCCATTTCTGT
65 CACGCTGAGGTATTTTCAAATTCTGT
* * ** * *
98885191 TCTTCAATTTCTGTGTTTCAAAAAAATCTGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCA
1 TTTTCAATTTATGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCACTCA
* *
98885256 CACGTTGAGGTATTTTCAAATTATGT
65 CACGCTGAGGTATTTTCAAATTCTGT
* * * *
98885282 TTTTCAAATTT-TGTCTTTCCAAAAAAATCAACTCATATTGCGAGATGTGAGTTCAACC-TCA-A
1 TTTTC-AATTTATGT-TTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCACT
* * *
98885344 GACACGCTGAGGTATTTTCAATTTCTTTTTT
63 CACACGCTGAGGTATTTTCAAATTC---TGT
* * * *
98885375 TTTTCAATTTATGTTTGTCAAAAAAATCAACTTATATTGCAAGAGGTAAGTTGAGCC-TCAGGTC
1 TTTTCAATTTATGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCA-CTC
* * * *
98885439 ACACGCCGATGTATTTTCAATTGATATTTTT
64 ACACGCTGAGGTATTTTCAA---AT-TCTGT
* ** ***
98885470 TTTTCAATTTATGCTTTGC--AAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTTGGGTCA
1 TTTTCAATTTATG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCACTCA
** * *
98885533 CATACCGAGGTATTTTCAAAATCTGT
65 CACGCTGAGGTATTTTCAAATTCTGT
* * *
98885559 TTTACAAATTT-TG--TTC-TAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-AGCTC
1 TTTTC-AATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCA-CTC
* * *
98885619 ACGCGCTGAGCTATTTTCAATTTCTGT
64 ACACGCTGAGGTATTTTCAAATTCTGT
* * *
98885646 TTTT-AATATCTA-GTTTT--AAAGAGTCAATTCATATTGCGAGA
1 TTTTCAAT-T-TATGTTTTCAAAAAAATCAACTCATATTGCGAGA
98885687 AATGAGTTAA
Statistics
Matches: 395, Mismatches: 74, Indels: 53
0.76 0.14 0.10
Matches are distributed among these distances:
85 3 0.01
86 3 0.01
87 114 0.29
88 22 0.06
89 11 0.03
90 27 0.07
91 31 0.08
92 81 0.21
93 62 0.16
94 19 0.05
95 17 0.04
96 3 0.01
97 1 0.00
98 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (90 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCACTCAC
ACGCTGAGGTATTTTCAAATTCTGT
Found at i:98885455 original size:184 final size:178
Alignment explanation
Indices: 98885104--98885686 Score: 442
Period size: 184 Copynumber: 3.2 Consensus size: 178
98885094 CATTGAGGTA
* *
98885104 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAGACA
* * * ** *
98885169 CTAAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCTGCTCATATTGCGAG
66 CTAAGGTATTTTCAATTTCTGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCAAG
* * * **
98885234 TGGTGAGTTGAGCCTTGACTCACACGTTGAGGTATTTTCAAATTATGT
131 AGGTAAGTTGAGCCTAGACTCACACGCCGAGGTATTTTCAAATTATGT
*
98885282 TTTTCAAATTT-TGTCTTTCCAAAAAAATCAACTCATATTGCGAGATGTGAGTTCAACCTCAAGA
1 TTTTC-AATTTCTGTCTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAGA
* * * *
98885346 CACGCTGAGGTATTTTCAATTTCTTTTTTTTTTCAATTTATGT-TTGTCAAAAAAATCAACTTAT
64 CA--CTAAGGTATTTTCAATTTC---TGTTCTTCAATTTATGTGTT-TCAAAAAAATCAACTCAT
* * * *
98885410 ATTGCAAGAGGTAAGTTGAGCCTCAG-GTCACACGCCGATGTATTTTCAATTGATATTTTT
123 ATTGCAAGAGGTAAGTTGAGCCT-AGACTCACACGCCGAGGTATTTTCAA---AT-TATGT
* ** * * *** *
98885470 TTTTCAATTTATG-CTTTGC--AAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTTGGGTC
1 TTTTCAATTTCTGTCTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAGAC
** * *
98885532 ACATACCGAGGTATTTTCAAAATCTGTT-TTACAAATT-T-TG-TTC-TAAAAATCAACTCATAT
65 AC-TA---AGGTATTTTCAATTTCTGTTCTT-CAATTTATGTGTTTCAAAAAAATCAACTCATAT
* * * * * * * *
98885592 TGCGAGAAGTGAGTTGAGCCTTAG-CTCACGCGCTGAGCTATTTTCAATTTCTGT
125 TGCAAGAGGTAAGTTGAGCC-TAGACTCACACGCCGAGGTATTTTCAAATTATGT
* * * *
98885646 TTTT-AATATCTAGT-TTT--AAAGAGTCAATTCATATTGCGAGA
1 TTTTCAATTTCT-GTCTTTCAAAAAAATCAACTCATATTGCGAGA
98885687 AATGAGTTAA
Statistics
Matches: 324, Mismatches: 57, Indels: 51
0.75 0.13 0.12
Matches are distributed among these distances:
175 23 0.07
176 11 0.03
177 1 0.00
178 12 0.04
179 49 0.15
180 52 0.16
181 19 0.06
182 2 0.01
183 6 0.02
184 77 0.24
185 36 0.11
187 26 0.08
188 10 0.03
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (178 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAGACA
CTAAGGTATTTTCAATTTCTGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCAAG
AGGTAAGTTGAGCCTAGACTCACACGCCGAGGTATTTTCAAATTATGT
Found at i:98885520 original size:93 final size:93
Alignment explanation
Indices: 98885193--98885640 Score: 277
Period size: 92 Copynumber: 4.9 Consensus size: 93
98885183 ATTTCTGTTC
* ** ** * * *
98885193 TTCAATTTCTGTGTT-TCAAAAAAATCTGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACTCA
1 TTCAATTTATGT-TTGTC-AAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCAG-GTCA
** * *
98885256 CACGTTGAGGTATTTTCAA---ATTATGTTT
63 CACGCCGAGGTATTTTCAATTGATTTTTTTT
** * * * *
98885284 TTCAAATTT-TGTCTT-TCCAAAAAAATCAACTCATATTGCGAGATGTGAGTTCAACCTCAAG--
1 TTC-AATTTATGT-TTGT-C-AAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCAGGTC
* **
98885345 ACACGCTGAGGTATTTTCAATTTCTTTTTTTT
62 ACACGCCGAGGTATTTTCAATTGATTTTTTTT
* * *
98885377 TTCAATTTATGTTTGTCAAAAAAATCAACTTATATTGCA-AGAGGTAAGTTGAGCCTCAGGTCAC
1 TTCAATTTATGTTTGTC-AAAAAATCAACTCATATT-AAGAGAGGTGAGTTGAGCCTCAGGTCAC
*
98885441 ACGCCGATGTATTTTCAATTGATATTTTTTT
64 ACGCCGAGGTATTTTCAATTGAT-TTTTTTT
**
98885472 TTCAATTTATGCTTTG-C-AAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTTGGGTCACA
1 TTCAATTTATG-TTTGTCAAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCAGGTCACA
** * * *
98885535 TACCGAGGTATTTTCAA---AATCTGTTT
65 CGCCGAGGTATTTTCAATTGATTTTTTTT
* * ** * * * *
98885561 TACAA---AT-TTTGTTCTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTAGCTCACG
1 TTCAATTTATGTTTG-TCAAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCAGGTCACA
* *
98885622 CGCTGAGCTATTTTCAATT
65 CGCCGAGGTATTTTCAATT
98885641 TCTGTTTTTA
Statistics
Matches: 290, Mismatches: 48, Indels: 40
0.77 0.13 0.11
Matches are distributed among these distances:
84 4 0.01
86 3 0.01
87 53 0.18
89 9 0.03
90 20 0.07
91 9 0.03
92 82 0.28
93 66 0.23
94 21 0.07
95 19 0.07
96 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (93 bp):
TTCAATTTATGTTTGTCAAAAAATCAACTCATATTAAGAGAGGTGAGTTGAGCCTCAGGTCACAC
GCCGAGGTATTTTCAATTGATTTTTTTT
Found at i:98886455 original size:16 final size:17
Alignment explanation
Indices: 98886434--98886489 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
98886424 TAGTAGGGGG
98886434 TTTTTTG-AGGAGTTTT
1 TTTTTTGAAGGAGTTTT
*
98886450 TTTTTTAGAAGG-TTTTT
1 TTTTTT-GAAGGAGTTTT
*
98886467 TTTTTTGAAGAAGTTTT
1 TTTTTTGAAGGAGTTTT
98886484 TTTTTT
1 TTTTTT
98886490 TGGGGGGGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 10 0.29
17 21 0.62
18 3 0.09
ACGTcount: A:0.16, C:0.00, G:0.18, T:0.66
Consensus pattern (17 bp):
TTTTTTGAAGGAGTTTT
Found at i:98886491 original size:18 final size:17
Alignment explanation
Indices: 98886434--98886491 Score: 82
Period size: 16 Copynumber: 3.4 Consensus size: 17
98886424 TAGTAGGGGG
*
98886434 TTTTTTGAGGAGTTTTT
1 TTTTTTGAAGAGTTTTT
*
98886451 TTTTTAGAAG-GTTTTT
1 TTTTTTGAAGAGTTTTT
98886467 TTTTTTGAAGAAGTTTTT
1 TTTTTTGAAG-AGTTTTT
98886485 TTTTTTG
1 TTTTTTG
98886492 GGGGGGGGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
16 15 0.42
17 8 0.22
18 13 0.36
ACGTcount: A:0.16, C:0.00, G:0.19, T:0.66
Consensus pattern (17 bp):
TTTTTTGAAGAGTTTTT
Found at i:98886873 original size:23 final size:23
Alignment explanation
Indices: 98886847--98886890 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
98886837 TTTTTTTTGT
98886847 TATTATTATATT-TCTTAATATTA
1 TATTA-TATATTCTCTTAATATTA
*
98886870 TATTATATATTCTTTTAATAT
1 TATTATATATTCTCTTAATAT
98886891 ATTAGGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTATATATTCTCTTAATATTA
Found at i:98886891 original size:20 final size:21
Alignment explanation
Indices: 98886850--98886922 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 21
98886840 TTTTTGTTAT
*
98886850 TATTATAT-TTCTTAATATTA
1 TATTATATATTCTTAATAATA
*
98886870 TATTATATATTCTT-TTAATA
1 TATTATATATTCTTAATAATA
* **
98886890 TATTAGGTATATTCTAAATTCTA
1 TATTA--TATATTCTTAATAATA
*
98886913 TATTACATAT
1 TATTATATAT
98886923 ATATATTATA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
20 17 0.40
21 9 0.21
22 8 0.19
23 8 0.19
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TATTATATATTCTTAATAATA
Found at i:98886936 original size:23 final size:25
Alignment explanation
Indices: 98886910--98886965 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
98886900 ATTCTAAATT
98886910 CTATATTACATATATAT-ATT-ATA
1 CTATATTACATATATATCATTAATA
* ** *
98886933 CTATTTTATGTATATATCTTTAATA
1 CTATATTACATATATATCATTAATA
98886958 CTATATTA
1 CTATATTA
98886966 TTTATATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 14 0.54
24 2 0.08
25 10 0.38
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (25 bp):
CTATATTACATATATATCATTAATA
Found at i:98886947 original size:25 final size:25
Alignment explanation
Indices: 98886910--98887058 Score: 76
Period size: 25 Copynumber: 6.0 Consensus size: 25
98886900 ATTCTAAATT
**
98886910 CTATATTACATATATATA-TT-ATA
1 CTATATTATGTATATATATTTAATA
* *
98886933 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* * * *
98886958 CTATATTATTTATATTTTTTTTTCTACATG
1 CTATATTATGTATA---TATATT-TA-ATA
* *
98886988 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATGTATATATATTTAATA
* * *
98887011 -TATATTATGTATGTAT-TTTTACA
1 CTATATTATGTATATATATTTAATA
* *
98887034 CTATATTATGTACATATTTTTAATA
1 CTATATTATGTATATATATTTAATA
98887059 TTATCACGTA
Statistics
Matches: 95, Mismatches: 21, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
22 18 0.19
23 14 0.15
24 18 0.19
25 22 0.23
26 2 0.02
27 2 0.02
28 4 0.04
29 2 0.02
30 13 0.14
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:98887013 original size:22 final size:23
Alignment explanation
Indices: 98886988--98887053 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
98886978 TTTCTACATG
*
98886988 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
98887010 TTATATTATGTATGTATTTTTACA
1 TTATATTATGTATATA-TTTTACA
* *
98887034 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
98887054 TAATATTATC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
22 14 0.38
23 9 0.24
24 14 0.38
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:98887043 original size:24 final size:23
Alignment explanation
Indices: 98886993--98887056 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 23
98886983 ACATGTTATC
*
98886993 TTATGTATATA-TTTTAATTATA
1 TTATGTATATATTTTTAACTATA
*
98887015 TTATGTATGTATTTTTACACTATA
1 TTATGTATATATTTTTA-ACTATA
*
98887039 TTATGTACATATTTTTAA
1 TTATGTATATATTTTTAA
98887057 TATTATCACG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 10 0.28
23 6 0.17
24 20 0.56
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (23 bp):
TTATGTATATATTTTTAACTATA
Found at i:98887059 original size:20 final size:20
Alignment explanation
Indices: 98887036--98887094 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
98887026 TTTTTACACT
98887036 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
98887056 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
98887079 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
98887095 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:98887231 original size:16 final size:15
Alignment explanation
Indices: 98887207--98887254 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
98887197 TAATTATTAT
*
98887207 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
98887223 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
98887238 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
98887254 T
1 T
98887255 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:98887242 original size:7 final size:8
Alignment explanation
Indices: 98887207--98887258 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
98887197 TAATTATTAT
*
98887207 TATTCTAA
1 TATTTTAA
*
98887215 TATTTTGA
1 TATTTTAA
98887223 TATTTTAA
1 TATTTTAA
98887231 TATTTT-A
1 TATTTTAA
98887238 TATTTTATA
1 TATTTTA-A
* *
98887247 TACTTTAT
1 TATTTTAA
98887255 TATT
1 TATT
98887259 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:98891996 original size:21 final size:22
Alignment explanation
Indices: 98891959--98891999 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
98891949 AATAAGAAGA
98891959 AAGCAATAAGAAAATAGCATAC
1 AAGCAATAAGAAAATAGCATAC
*
98891981 AAGCAATAA-TAAATAGCAT
1 AAGCAATAAGAAAATAGCAT
98892000 TTTTTTGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.59, C:0.12, G:0.12, T:0.17
Consensus pattern (22 bp):
AAGCAATAAGAAAATAGCATAC
Found at i:98894421 original size:24 final size:24
Alignment explanation
Indices: 98894394--98894447 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
98894384 GTTCTAACAT
*
98894394 TGGTGTTGGCTCAGATGCTGGCAC
1 TGGTGCTGGCTCAGATGCTGGCAC
98894418 TGGTGCTGGCTCAGATGCTGGCAC
1 TGGTGCTGGCTCAGATGCTGGCAC
98894442 TGGTGC
1 TGGTGC
98894448 ATTTATTGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.11, C:0.22, G:0.39, T:0.28
Consensus pattern (24 bp):
TGGTGCTGGCTCAGATGCTGGCAC
Found at i:98894424 original size:12 final size:12
Alignment explanation
Indices: 98894409--98894447 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
98894399 TTGGCTCAGA
98894409 TGCTGGCACTGG
1 TGCTGGCACTGG
* * *
98894421 TGCTGGCTCAGA
1 TGCTGGCACTGG
98894433 TGCTGGCACTGG
1 TGCTGGCACTGG
98894445 TGC
1 TGC
98894448 ATTTATTGAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.10, C:0.26, G:0.38, T:0.26
Consensus pattern (12 bp):
TGCTGGCACTGG
Found at i:98895215 original size:17 final size:17
Alignment explanation
Indices: 98895193--98895226 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98895183 ATCCACTAAT
*
98895193 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
98895210 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
98895227 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:98899844 original size:17 final size:17
Alignment explanation
Indices: 98899822--98899855 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98899812 ATCCACTAAT
*
98899822 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
98899839 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
98899856 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:98908841 original size:30 final size:30
Alignment explanation
Indices: 98908805--98908873 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
98908795 CTAGCCTTTG
98908805 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
98908835 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
98908865 CCACCACCA
1 CCACCACCA
98908874 CTTGTACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:98909475 original size:25 final size:25
Alignment explanation
Indices: 98909421--98909484 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
98909411 TCTAAATTTA
*
98909421 TATTACGTATATATTATTATACTAT
1 TATTATGTATATATTATTATACTAT
98909446 T-TTATGTATATATCT-TTAATACT-T
1 TATTATGTATATAT-TATT-ATACTAT
*
98909470 TATTATTTATATATT
1 TATTATGTATATATT
98909485 TTTTTTTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
24 16 0.47
25 18 0.53
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (25 bp):
TATTATGTATATATTATTATACTAT
Found at i:98909556 original size:25 final size:24
Alignment explanation
Indices: 98909506--98909568 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
98909496 CATGTTATCT
*
98909506 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
98909532 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
98909557 TACATATTTTTT
1 TATGTATTTTTT
98909569 TATATCTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:98909577 original size:27 final size:25
Alignment explanation
Indices: 98909511--98909582 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
98909501 TATCTTATGT
* *
98909511 ATATATTTTAAT-TATATTATGTAT
1 ATATTTTTTAATCTATATTATGTAC
*
98909535 GTATTTTTTACA-CTATATTATGTAC
1 ATATTTTTTA-ATCTATATTATGTAC
*
98909560 ATATTTTTTTATATCTATTTTAT
1 ATA-TTTTTTA-ATCTATATTAT
98909583 ACATATGTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 8 0.21
25 14 0.37
26 8 0.21
27 8 0.21
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (25 bp):
ATATTTTTTAATCTATATTATGTAC
Found at i:98909590 original size:80 final size:81
Alignment explanation
Indices: 98909427--98909604 Score: 182
Period size: 80 Copynumber: 2.2 Consensus size: 81
98909417 TTTATATTAC
* * * * * *
98909427 GTATATATTATTATACTATTTTATGTATATATCTTTAATACTTTATTATTTATATATTTTTTTTT
1 GTATATATTATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTA
*
98909492 TCTACATGTTATCTTAT
66 TCTA-ATGTTATCATAT
* * * *
98909509 GTATATATT-TTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTAT
1 GTATATATTATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTT-T
*
98909572 ATCT-ATTTTATACATAT
65 ATCTAATGTTAT-CATAT
*
98909589 GTGTATATTATATATA
1 GTATATATTAT-TATA
98909605 TCTTAACATT
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
79 6 0.08
80 52 0.67
81 8 0.10
82 11 0.14
83 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.58
Consensus pattern (81 bp):
GTATATATTATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTA
TCTAATGTTATCATAT
Found at i:98909657 original size:25 final size:24
Alignment explanation
Indices: 98909629--98909684 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
98909619 GTTATATTTT
*
98909629 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
98909654 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
98909677 CACTATTA
1 CACTATTA
98909685 GTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:98914842 original size:15 final size:15
Alignment explanation
Indices: 98914822--98914852 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98914812 CGAACCAAGA
98914822 CCAGCAAGGCCTAAT
1 CCAGCAAGGCCTAAT
98914837 CCAGCAAGGCCTAAT
1 CCAGCAAGGCCTAAT
98914852 C
1 C
98914853 TAGAGACGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.35, G:0.19, T:0.13
Consensus pattern (15 bp):
CCAGCAAGGCCTAAT
Found at i:98921770 original size:13 final size:13
Alignment explanation
Indices: 98921726--98921770 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
98921716 CGCCGAGGTA
98921726 TTTTTAATTTCTG
1 TTTTTAATTTCTG
98921739 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
98921753 CTTTTAATTTCTG
1 TTTTTAATTTCTG
98921766 TTTTT
1 TTTTT
98921771 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:98921835 original size:100 final size:101
Alignment explanation
Indices: 98921638--98921923 Score: 416
Period size: 100 Copynumber: 2.9 Consensus size: 101
98921628 CGCTGAGGTA
* ** * *
98921638 TTTTCAATTTCCGTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCT
1 TTTTCAATTTCTGCCTTTT-AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * *
98921703 GAGCCTCGGGGCACGCCGAGGTATTTTTAATTTCTGT
65 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT
*
98921740 TTTTCAATTTCTG-CTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGCCTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
98921804 AGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT
66 AGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT
* ** *
98921840 TTTTCAATTTTTGCCTTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGCCTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
98921903 AGCCTCAGGACACGCTGAGGT
66 AGCCTCAGGGCACGCTGAGGT
98921924 CAATTTTCGT
Statistics
Matches: 169, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
99 50 0.30
100 88 0.52
101 19 0.11
102 12 0.07
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (101 bp):
TTTTCAATTTCTGCCTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT
Found at i:98922150 original size:75 final size:75
Alignment explanation
Indices: 98921873--98922538 Score: 845
Period size: 75 Copynumber: 9.0 Consensus size: 75
98921863 TCTGCTTTTC
* **
98921873 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTCAATTTTCGTTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT--ATTTTC-AATTT
* *
98921938 TTTTATGTTTCTAAAA
63 CTGT-T-TTTC-AAAA
* * * *
98921954 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
*
98922019 TTTGTC--AA
66 TTTTTCAAAA
* * * *
98922027 AACTCAACTCATATTGCAAGA-TTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
98922091 TTTTTCAAAA
66 TTTTTCAAAA
* * * *
98922101 AAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
*
98922166 TTTGTC--AA
66 TTTTTCAAAA
*
98922174 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
* *
98922239 TCTTTAAAAA
66 TTTTTCAAAA
* * *
98922249 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
98922314 TTTTTC-AAA
66 TTTTTCAAAA
* * * *
98922323 AAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
*
98922386 TTTGTC--AA
66 TTTTTCAAAA
*
98922394 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
* *
98922459 TCTTTAAAAA
66 TTTTTCAAAA
* * * *
98922469 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-A-A-ACGCTGAGGTGTTTTCCATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
*
98922531 TTCTTCAA
66 TTTTTCAA
98922539 TTTCTGTGTT
Statistics
Matches: 519, Mismatches: 57, Indels: 27
0.86 0.09 0.04
Matches are distributed among these distances:
71 39 0.08
72 95 0.18
73 111 0.21
74 61 0.12
75 148 0.29
76 3 0.01
77 1 0.00
78 6 0.01
79 5 0.01
81 50 0.10
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (75 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
TTTTTCAAAA
Found at i:98922150 original size:147 final size:148
Alignment explanation
Indices: 98921873--98922538 Score: 855
Period size: 147 Copynumber: 4.5 Consensus size: 148
98921863 TCTGCTTTTC
* **
98921873 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTCAATTTTCGTTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT--ATTTTC-AATTT
* * * *
98921938 TTTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAG
63 CTGT-T-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
98922003 GTAATTTCAATTTTTGTTTGTCAA
125 GTAATTTCAATTTCTGTTTGTCAA
* * * *
98922027 AACTCAACTCATATTGCAAGA-TTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
* *
98922091 TTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
66 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATT
*
98922156 TCAATTTTTGTTTGTCAA
131 TCAATTTCTGTTTGTCAA
*
98922174 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
* * * * * *
98922239 TCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTT
66 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATT
*
98922304 TCAATTTCTGTTTTTCAAA
131 TCAATTTCTGTTTGTC-AA
* * * *
98922323 AAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
* * *
98922386 TTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
66 TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATT
*
98922449 TCAATTTCTGTCTT-TAAAAA
131 TCAATTTCTGT-TTGT--CAA
* * * *
98922469 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-A-A-ACGCTGAGGTGTTTTCCATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
*
98922531 TTCTTCAA
66 TTTTTCAA
98922539 TTTCTGTGTT
Statistics
Matches: 461, Mismatches: 43, Indels: 23
0.87 0.08 0.04
Matches are distributed among these distances:
145 92 0.20
146 38 0.08
147 118 0.26
148 117 0.25
149 40 0.09
150 5 0.01
151 6 0.01
153 26 0.06
154 19 0.04
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (148 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATT
TCAATTTCTGTTTGTCAA
Found at i:98922368 original size:220 final size:221
Alignment explanation
Indices: 98921873--98922538 Score: 979
Period size: 220 Copynumber: 3.0 Consensus size: 221
98921863 TCTGCTTTTC
* **
98921873 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTCAATTTTCGTTTTT
1 AAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCA-GACACGCTGAGGT-AA-TTTCAATTTT
* * * *
98921938 TTTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAG
63 TGTT-TG--TC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
* * * * * * * *
98922003 GTAATTTCAATTTTTGT-TTGT--CAAAACTCAACTCATATTGCAAGA-TTGAGTTGAGCCTCAA
122 GTATTTTCAATTTCTGTCTT-TAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAA
98922064 GACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAA
186 GACACGTTGAGGTATTTTCAATTTCTGTTTTTC-AAA
98922101 AAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG
1 AAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTTTTG
98922166 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
65 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
98922231 AATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTG
130 AATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTG
98922296 AGGTATTTTCAATTTCTGTTTTTCAAA
195 AGGTATTTTCAATTTCTGTTTTTCAAA
* *
98922323 AAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGACGCTGAGGTAATTTCAATTTTTGT
1 AAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTTTGT
98922387 TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
66 TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
*
98922452 ATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-A-A-ACGCTGA
131 ATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGA
* * *
98922514 GGTGTTTTCCATTTCTGTTCTTCAA
196 GGTATTTTCAATTTCTGTTTTTCAA
98922539 TTTCTGTGTT
Statistics
Matches: 413, Mismatches: 21, Indels: 19
0.91 0.05 0.04
Matches are distributed among these distances:
217 28 0.07
218 1 0.00
219 1 0.00
220 208 0.50
221 2 0.00
222 59 0.14
223 49 0.12
225 2 0.00
226 11 0.03
227 2 0.00
228 50 0.12
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (221 bp):
AAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTTTGT
TTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
ATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGA
GGTATTTTCAATTTCTGTTTTTCAAA
Found at i:98922645 original size:15 final size:14
Alignment explanation
Indices: 98922609--98922641 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
98922599 CGCTGAGGTA
98922609 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
98922623 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
98922637 TTTTC
1 TTTTC
98922642 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:98922649 original size:91 final size:90
Alignment explanation
Indices: 98922507--98922999 Score: 372
Period size: 91 Copynumber: 5.3 Consensus size: 90
98922497 TGAACCTCAA
* * * * * *
98922507 ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGC
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
*
98922572 GAGTGGTGAGTTGAGCCTTGACTCAC
66 GAGAGGTGAGTTGAGCCTTGA-TCAC
* *
98922598 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* * **
98922662 CGAGAGGTGAGTTCAGCC-TCAGGAC
65 CGAGAGGTGAGTTGAGCCTTGATCAC
* * *
98922687 ACGCTGAGATATTTTCAATTTCTTTTTTTTTTCAATTTATGTTTGTCAAAAAAAATCAACTCATA
1 ACGCTGAGGTATTTTCAATTTC---TGTTTTTCAATTTATGTTTTTC-AAAAAAATCAACTCATA
* *
98922752 TTGTGAGAGGTGAGTTGAGCCTCAGATCAC
62 TTGCGAGAGGTGAGTTGAGCCT-TGATCAC
* * * * * * * **
98922782 ACGCCGAGGTATTTTCAATTGATTTTTATTTTTATTTTTTTTCAATTTATGCTTTGCAAAAATCA
1 ACGCTGAGGTATTTTCAATT--TCTGT-TTTTCAATTTATGT---TTT-T-C---AAAAAAATCA
* * *
98922847 ACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCAC
55 ACTCATATTGCGAGAGGTGAGTTGAGCCT-TGATCAC
** * ** *
98922884 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTT-TG-TTTT---AAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* * *
98922944 CGAGAAGTGAGTTGAGCCTTG-GCTC
65 CGAGAGGTGAGTTGAGCCTTGATCAC
*
98922969 ACGTTCTGAGCTATTTTCAATTTCTGTTTTT
1 ACG--CTGAGGTATTTTCAATTTCTGTTTTT
98923000 AATGTTTAGT
Statistics
Matches: 321, Mismatches: 60, Indels: 46
0.75 0.14 0.11
Matches are distributed among these distances:
85 3 0.01
86 1 0.00
87 56 0.17
89 22 0.07
90 2 0.01
91 72 0.22
92 19 0.06
93 35 0.11
94 4 0.01
95 34 0.11
97 1 0.00
98 2 0.01
99 5 0.02
100 8 0.02
102 57 0.18
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (90 bp):
ACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGATCAC
Found at i:98922784 original size:184 final size:177
Alignment explanation
Indices: 98922466--98922799 Score: 447
Period size: 184 Copynumber: 1.8 Consensus size: 177
98922456 CTGTCTTTAA
* * * * *
98922466 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAACGCTGAGGTGTTTTCCATTTCTG
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAACGCTGAGATATTTTCAATTTCTG
* * * *
98922531 TTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTC
66 TTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGACTC
*
98922596 ACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
131 ACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
*
98922643 AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCA--A-ACGCTGAGATATTTTCAATTT
* * *
98922708 CTTTTTTTTTTCAATTTATGT-TTGTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
63 C---TGTTCTTCAATTTATGTGTT-TC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
98922772 CTCAGA-TCACACGCCGAGGTATTTTCAA
123 CT-AGACTCACACGCCGAGGTATTTTCAA
98922800 TTGATTTTTA
Statistics
Matches: 134, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
177 37 0.28
179 1 0.01
180 19 0.14
182 2 0.01
183 16 0.12
184 57 0.43
185 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (177 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAACGCTGAGATATTTTCAATTTCTG
TTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGACTC
ACACGCCGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
Found at i:98922862 original size:102 final size:103
Alignment explanation
Indices: 98922711--98922901 Score: 287
Period size: 102 Copynumber: 1.8 Consensus size: 103
98922701 TCAATTTCTT
**
98922711 TTTTTTTTCAATTTATGTTTGTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCA
1 TTTTTTTTCAATTTATGTTTGTC--AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCA
*
98922776 GATCACACGCCGAGGTATTTTCAATTGATTTTTATTTTTA
64 GATCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
*
98922816 TTTTTTTTCAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
1 TTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
* *
98922879 GTCACATACCGAGGTATTTTCAA
65 ATCACACACCGAGGTATTTTCAA
98922902 AATCTGTTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
102 57 0.72
105 18 0.23
106 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (103 bp):
TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGA
TCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
Found at i:98922985 original size:87 final size:87
Alignment explanation
Indices: 98922839--98923066 Score: 246
Period size: 87 Copynumber: 2.6 Consensus size: 87
98922829 TATGCTTTGC
* * * *
98922839 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
98922904 TCTGTTTTACAAAT-TTT-GTTTT
66 TCTGTTTT--AAATGTTTAGTTTT
* * * * **
98922926 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTTCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
*
98922991 TCTGTTTTTAATGTTTAGTTTT
66 TCTGTTTTAAATGTTTAGTTTT
* * * * * *
98923013 AAAGAGTCAATTCATATTGCGAGAAATGAGTTAAG-CTCAGGATCACATGCCGAG
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGCTCACATACCGAG
98923067 TAAAGAATAA
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 73 0.62
88 38 0.32
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
TCTGTTTTAAATGTTTAGTTTT
Found at i:98923759 original size:30 final size:29
Alignment explanation
Indices: 98923684--98923779 Score: 149
Period size: 30 Copynumber: 3.3 Consensus size: 29
98923674 AGCCTTTGCT
*
98923684 ACCACAACTCCACTAGCCACACTTGC-CC
1 ACCACCACTCCACTAGCCACACTTGCTCC
98923712 ACCACCACTCCACTAGCCACACTTGCTCC
1 ACCACCACTCCACTAGCCACACTTGCTCC
* *
98923741 ACCACCTACTCCATTAGCCACACTTGCTCT
1 ACCACC-ACTCCACTAGCCACACTTGCTCC
98923771 ACCACCACT
1 ACCACCACT
98923780 TGTACCTACA
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
28 25 0.40
29 11 0.17
30 27 0.43
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.19
Consensus pattern (29 bp):
ACCACCACTCCACTAGCCACACTTGCTCC
Found at i:98924287 original size:23 final size:24
Alignment explanation
Indices: 98924261--98924390 Score: 56
Period size: 23 Copynumber: 5.5 Consensus size: 24
98924251 TCTTTTTTTT
*
98924261 TATTA-TTATATTTCTTAATATTA
1 TATTACTTATATTTCTTAATACTA
* *
98924284 TATTA-TATATATATTCTT-TTAATA
1 TATTACT-TATAT-TTCTTAATACTA
** * **
98924308 TATTAGGTATA-TTCTAAATTTTA
1 TATTACTTATATTTCTTAATACTA
* * *
98924331 TATTACGTATATATATT-ATACTA
1 TATTACTTATATTTCTTAATACTA
* *
98924354 TTTTA-TGTATATATCTTTAATACTA
1 TATTACT-TATATTTC-TTAATACTA
*
98924379 TATTATTTATAT
1 TATTACTTATAT
98924391 ATATATTCTA
Statistics
Matches: 81, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
22 4 0.05
23 34 0.42
24 22 0.27
25 20 0.25
26 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (24 bp):
TATTACTTATATTTCTTAATACTA
Found at i:98924309 original size:24 final size:23
Alignment explanation
Indices: 98924261--98924312 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
98924251 TCTTTTTTTT
*
98924261 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
98924284 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
98924308 TATTA
1 TATTA
98924313 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:98924366 original size:25 final size:25
Alignment explanation
Indices: 98924338--98924507 Score: 89
Period size: 25 Copynumber: 6.8 Consensus size: 25
98924328 TTATATTACG
*
98924338 TATATATATTATACTATTTTATGTA
1 TATATATATTATACTATATTATGTA
* *
98924363 TATATCT-TTAATACTATATTATTTA
1 TATATATATT-ATACTATATTATGTA
* * *
98924388 TATATATATTCTAC-ATGTTATCTTA
1 TATATATATTATACTATATTAT-GTA
* * *
98924413 TGTATATATTTTAATTATATTATGTA
1 TATATATATTAT-ACTATATTATGTA
* * *
98924439 TGT-T-TTTTACACTATATTATGTA
1 TATATATATTATACTATATTATGTA
* * * * *
98924462 CATATTTTTTATATCTATTTTATACATA
1 TATATATATTATA-CTATATTAT--GTA
*
98924490 TGTATATATTATA-TATAT
1 TATATATATTATACTATAT
98924508 CTTAACATTA
Statistics
Matches: 110, Mismatches: 25, Indels: 19
0.71 0.16 0.12
Matches are distributed among these distances:
23 13 0.12
24 12 0.11
25 48 0.44
26 20 0.18
27 6 0.05
28 11 0.10
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTATACTATATTATGTA
Found at i:98924435 original size:22 final size:23
Alignment explanation
Indices: 98924380--98924469 Score: 85
Period size: 22 Copynumber: 3.9 Consensus size: 23
98924370 TTAATACTAT
* *
98924380 ATTAT-TTATATATATATTCTAC
1 ATTATATTATGTATATATTTTAC
*
98924402 ATGTTATCTTATGTATATATTTTA-
1 A--TTATATTATGTATATATTTTAC
* *
98924426 ATTATATTATGTATGTTTTTTAC
1 ATTATATTATGTATATATTTTAC
* *
98924449 ACTATATTATGTACATATTTT
1 ATTATATTATGTATATATTTT
98924470 TTATATCTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
22 19 0.35
23 17 0.31
24 5 0.09
25 14 0.25
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.57
Consensus pattern (23 bp):
ATTATATTATGTATATATTTTAC
Found at i:98924458 original size:23 final size:22
Alignment explanation
Indices: 98924329--98924469 Score: 84
Period size: 23 Copynumber: 5.9 Consensus size: 22
98924319 TTCTAAATTT
* *
98924329 TATATTACGTATATATATTATAC
1 TATATTATGTATATATTTTA-AC
*
98924352 TATTTTATGTATATATCTTTAATAC
1 TATATTATGTATATAT-TTT-A-AC
* *
98924377 TATATTATTTATATATATATTCTACATGT
1 TATATTA--TGTATATAT-TT-TA-A--C
* *
98924406 TATCTTATGTATATATTTTAAT
1 TATATTATGTATATATTTTAAC
* *
98924428 TATATTATGTATGTTTTTTACAC
1 TATATTATGTATATATTTTA-AC
*
98924451 TATATTATGTACATATTTT
1 TATATTATGTATATATTTT
98924470 TTATATCTAT
Statistics
Matches: 93, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
22 18 0.19
23 31 0.33
24 3 0.03
25 12 0.13
26 2 0.02
27 20 0.22
28 1 0.01
29 6 0.06
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (22 bp):
TATATTATGTATATATTTTAAC
Found at i:98928625 original size:6 final size:6
Alignment explanation
Indices: 98928614--98928649 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
98928604 TGTTAAAAAC
*
98928614 ATATTA ATATTA ATATTA ATAATA ATATTA ATATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
98928650 CATAAAGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATATTA
Found at i:98928641 original size:18 final size:19
Alignment explanation
Indices: 98928612--98928654 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
98928602 AATGTTAAAA
*
98928612 ACATATTAATATTAATATT
1 ACATAATAATATTAATATT
98928631 A-ATAATAATATTAATATT
1 ACATAATAATATTAATATT
98928649 ACATAA
1 ACATAA
98928655 AGATATACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
ACATAATAATATTAATATT
Found at i:98928689 original size:21 final size:21
Alignment explanation
Indices: 98928652--98928691 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
98928642 TAATATTACA
*
98928652 TAAAGATATACTTATATATAT
1 TAAAGATATACTCATATATAT
98928673 TAAAGATATA-TGCATATAT
1 TAAAGATATACT-CATATAT
98928692 GATATAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (21 bp):
TAAAGATATACTCATATATAT
Found at i:98929682 original size:24 final size:24
Alignment explanation
Indices: 98929654--98929710 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
98929644 AAATCACCTT
98929654 TTGGTCTTTTTAGCTTCTGATTTG
1 TTGGTCTTTTTAGCTTCTGATTTG
98929678 TTGGTCTTTTTAGCTTCTGATTTG
1 TTGGTCTTTTTAGCTTCTGATTTG
*
98929702 TTGATCTTT
1 TTGGTCTTT
98929711 GATATTTCGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.09, C:0.12, G:0.19, T:0.60
Consensus pattern (24 bp):
TTGGTCTTTTTAGCTTCTGATTTG
Found at i:98930919 original size:14 final size:14
Alignment explanation
Indices: 98930896--98930929 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98930886 GAGTTGATTT
* *
98930896 TTGAAGAATATAAA
1 TTGAAAAATAGAAA
98930910 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
98930924 TTGAAA
1 TTGAAA
98930930 TTACCTCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:98931059 original size:84 final size:86
Alignment explanation
Indices: 98930849--98931179 Score: 286
Period size: 85 Copynumber: 3.9 Consensus size: 86
98930839 AAATACCTAG
*
98930849 TCACATGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAATATAAATTG
1 TCACATG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATGAAGAATATAAATTG
98930913 AAAAATAGAAATTGAAATTACC
65 AAAAATAGAAATTGAAATTACC
* * * * *
98930935 TCA-ACGTCCTGAGACCCAACTCACCTCTTGCAATATGAGTTGATTTATGAA-AAGTATAAATT-
1 TCACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATGAAGAA-TATAAATTG
* *
98930997 AAACA-A-AAATTGAAATTTCC
65 AAAAATAGAAATTGAAATTACC
*
98931017 TCAGCATGCCCTGAGGCTCAACTCATCTCTCGCAATATGA---G---T-TGAA-AATATAAATTG
1 TCA-CATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATGAAGAATATAAATTG
*
98931074 AAAGAACAGAAATTGGAAA-TACC
65 AAA-AATAGAAATT-GAAATTACC
* * * *
98931097 TCAGTATACGAACC-GAGGCCCAACTCACCTCTCGCAATATGAGTTGACTTT-TGAA-AACTAGA
1 TCA-CAT--G-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTATGAAGAA-TATA
* *
98931159 AATT-AAAAACAGAATTTGAAA
60 AATTGAAAAATAGAAATTGAAA
98931180 AAAAACAGAT
Statistics
Matches: 203, Mismatches: 22, Indels: 39
0.77 0.08 0.15
Matches are distributed among these distances:
76 8 0.04
77 9 0.04
78 2 0.01
79 1 0.00
80 14 0.07
81 5 0.02
82 43 0.21
83 3 0.01
84 37 0.18
85 48 0.24
86 3 0.01
87 4 0.02
88 9 0.04
89 10 0.05
90 7 0.03
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (86 bp):
TCACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTATGAAGAATATAAATTGA
AAAATAGAAATTGAAATTACC
Found at i:98931121 original size:166 final size:164
Alignment explanation
Indices: 98930852--98931165 Score: 390
Period size: 166 Copynumber: 1.9 Consensus size: 164
98930842 TACCTAGTCA
98930852 CATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAGAATATAAATTGAAAA
1 CATGACCCGAGGCTCAACTCACCTCTCGCAATATGA--TG---TTTGAAGAATATAAATTGAAAA
* * *
98930917 ATAGAAATTGAAATTACCTCAACGTCCTGAGACCCAACTCACCTCTTGCAATATGAGTTGA-TTT
61 ACAGAAATTGAAATTACCTCAACGACCTGAGACCCAACTCACCTCTCGCAATATGAGTTGACTTT
* *
98930981 ATGAAAAGTATAAATTAAACAAAAATTGAAATTTCCTCAG
126 -TGAAAACTAGAAATTAAACAAAAATTGAAATTTCCTCAG
*
98931021 CATG-CCCTGAGGCTCAACTCATCTCTCGCAATATGA-G-TTGAA-AATATAAATTGAAAGAACA
1 CATGACCC-GAGGCTCAACTCACCTCTCGCAATATGATGTTTGAAGAATATAAATTGAAA-AACA
*
98931082 GAAATTGGAAA-TACCTCAGTATACGAACC-GAGGCCCAACTCACCTCTCGCAATATGAGTTGAC
64 GAAATT-GAAATTACCTC---A-ACG-ACCTGAGACCCAACTCACCTCTCGCAATATGAGTTGAC
98931145 TTTTGAAAACTAGAAATTAAA
123 TTTTGAAAACTAGAAATTAAA
98931166 AACAGAATTT
Statistics
Matches: 129, Mismatches: 7, Indels: 21
0.82 0.04 0.13
Matches are distributed among these distances:
161 14 0.11
162 20 0.16
163 4 0.03
165 1 0.01
166 51 0.40
167 5 0.04
168 3 0.02
169 31 0.24
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.26
Consensus pattern (164 bp):
CATGACCCGAGGCTCAACTCACCTCTCGCAATATGATGTTTGAAGAATATAAATTGAAAAACAGA
AATTGAAATTACCTCAACGACCTGAGACCCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAA
ACTAGAAATTAAACAAAAATTGAAATTTCCTCAG
Found at i:98931185 original size:17 final size:18
Alignment explanation
Indices: 98931163--98931198 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
98931153 ACTAGAAATT
98931163 AAAAACAGA-ATTTGAAA
1 AAAAACAGATATTTGAAA
*
98931180 AAAAACAGATTTTTGAAA
1 AAAAACAGATATTTGAAA
98931198 A
1 A
98931199 TAACTCGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.61, C:0.06, G:0.11, T:0.22
Consensus pattern (18 bp):
AAAAACAGATATTTGAAA
Found at i:98934516 original size:24 final size:23
Alignment explanation
Indices: 98934395--98934538 Score: 72
Period size: 22 Copynumber: 6.3 Consensus size: 23
98934385 ATAGTATTTG
*
98934395 AAATATATACATAAA-ATA-AAA
1 AAATATATACATAAATATATGAA
* *
98934416 AAATATATA-ACT-AGTA-ATGTTA
1 AAATATATACA-TAAATATATG-AA
* *
98934438 AAGTATATACAT-AATA-AT-AT
1 AAATATATACATAAATATATGAA
* *
98934458 ATATATATAAATAAATAT-TGAA
1 AAATATATACATAAATATATGAA
*
98934480 AAATGTATGTACATAACATATATGAA
1 AAA--TATATACATAA-ATATATGAA
*
98934506 AAATATATACATTATATAATATGTAA
1 AAATATATACA-TAAAT-ATATG-AA
98934532 AAATATA
1 AAATATA
98934539 ATATAGTATT
Statistics
Matches: 92, Mismatches: 16, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
20 12 0.13
21 16 0.17
22 18 0.20
23 1 0.01
24 18 0.20
25 11 0.12
26 16 0.17
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (23 bp):
AAATATATACATAAATATATGAA
Found at i:98934739 original size:21 final size:20
Alignment explanation
Indices: 98934713--98934753 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
98934703 ATATACCTAT
* *
98934713 ATATATATTAAAGATATATAC
1 ATATATAATAAA-ACATATAC
98934734 ATATATAATAAAACATATAC
1 ATATATAATAAAACATATAC
98934754 TAAGATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATATAATAAAACATATAC
Found at i:98934828 original size:56 final size:53
Alignment explanation
Indices: 98934762--98934871 Score: 123
Period size: 54 Copynumber: 2.0 Consensus size: 53
98934752 ACTAAGATTA
* *
98934762 ATAATAATAATAAGGATAATATAAAAATATATACATGAAATAGTATA-AAAAATAT
1 ATAATAATAAT-AGGAAAAAATAAAAA-ATATACATGAAATA-TATATAAAAATAT
** * *
98934817 ATAACTAATAATATTAAAAAATAAAAAATATACATGATATATATATAAACATAT
1 ATAA-TAATAATAGGAAAAAATAAAAAATATACATGAAATATATATAAAAATAT
98934871 A
1 A
98934872 CGATATATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
53 4 0.09
54 21 0.45
55 15 0.32
56 7 0.15
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.30
Consensus pattern (53 bp):
ATAATAATAATAGGAAAAAATAAAAAATATACATGAAATATATATAAAAATAT
Found at i:98935112 original size:19 final size:20
Alignment explanation
Indices: 98935078--98935115 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
98935068 ATAATGTATT
98935078 AATAAGAATGATAATAATAA
1 AATAAGAATGATAATAATAA
*
98935098 AATAAG-ATTATAATAATA
1 AATAAGAATGATAATAATA
98935116 GTATCATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (20 bp):
AATAAGAATGATAATAATAA
Found at i:98935160 original size:15 final size:15
Alignment explanation
Indices: 98934982--98935172 Score: 51
Period size: 15 Copynumber: 13.3 Consensus size: 15
98934972 ATACTAGTAC
* *
98934982 TAATAATATTATTAA
1 TAATAATAGTAATAA
98934997 T-A-AATA-TAATAA
1 TAATAATAGTAATAA
**
98935009 TAATAATAGT-ATGT
1 TAATAATAGTAATAA
* * *
98935023 TAATAACAGCAAGAA
1 TAATAATAGTAATAA
*
98935038 T-AT-ATA-AAATAA
1 TAATAATAGTAATAA
*
98935050 TAAT-ATGGTAA-AA
1 TAATAATAGTAATAA
*
98935063 TAATAATAATGTATTAA
1 TAATAAT-A-GTAATAA
*
98935080 TAAGAAT-GATAATAA
1 TAATAATAG-TAATAA
*
98935095 TAA-AATA--AGATTA
1 TAATAATAGTA-ATAA
98935108 TAATAATAGTATCATAA
1 TAATAATAGTA--ATAA
98935125 -AA-AATAG-ACATGAA
1 TAATAATAGTA-AT-AA
98935139 -AGA-AATAGTAATAA
1 TA-ATAATAGTAATAA
98935153 TAATAATA-TAAATAA
1 TAATAATAGT-AATAA
98935168 TAATA
1 TAATA
98935173 TATGTATGCA
Statistics
Matches: 133, Mismatches: 20, Indels: 46
0.67 0.10 0.23
Matches are distributed among these distances:
12 12 0.09
13 26 0.20
14 37 0.28
15 40 0.30
16 7 0.05
17 11 0.08
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (15 bp):
TAATAATAGTAATAA
Found at i:98940948 original size:26 final size:26
Alignment explanation
Indices: 98940902--98940954 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
98940892 TCAAACATGC
*
98940902 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
98940928 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
98940954 A
1 A
98940955 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:98952519 original size:15 final size:15
Alignment explanation
Indices: 98952489--98952530 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
98952479 AATAAATAAC
*
98952489 AATTAA-TAATACTA
1 AATTAATTAATAATA
98952503 AATTAATTAATAATA
1 AATTAATTAATAATA
* *
98952518 AATAAATAAATAA
1 AATTAATTAATAA
98952531 ACATAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 6 0.25
15 18 0.75
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
AATTAATTAATAATA
Found at i:98952521 original size:7 final size:7
Alignment explanation
Indices: 98952476--98952562 Score: 52
Period size: 7 Copynumber: 12.1 Consensus size: 7
98952466 TAATAAGGAC
98952476 AATAATA
1 AATAATA
*
98952483 AATAACA
1 AATAATA
*
98952490 ATTAAT-
1 AATAATA
*
98952496 AATACTA
1 AATAATA
*
98952503 AATTAATT
1 AA-TAATA
98952511 AATAATA
1 AATAATA
98952518 AATAAATA
1 AAT-AATA
98952526 AATAA-A
1 AATAATA
* *
98952532 CATAAAA
1 AATAATA
*
98952539 AGAGAATA
1 A-ATAATA
*
98952547 TATAATA
1 AATAATA
98952554 TAATAATA
1 -AATAATA
98952562 A
1 A
98952563 CAATATGAAC
Statistics
Matches: 59, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
6 9 0.15
7 28 0.47
8 22 0.37
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (7 bp):
AATAATA
Found at i:98952601 original size:3 final size:3
Alignment explanation
Indices: 98952593--98952630 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
98952583 TAGTACTAAG
*
98952593 ATA ATA ATA ATA ATG ATA A-A A-A ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
98952631 CGACAATACA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:98953325 original size:10 final size:10
Alignment explanation
Indices: 98953306--98953339 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
98953296 AAGGTATATA
98953306 TTTT-TATTT
1 TTTTATATTT
98953315 TTTTATATTT
1 TTTTATATTT
*
98953325 TTTTATATAT
1 TTTTATATTT
98953335 TTTTA
1 TTTTA
98953340 ATATATGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTATATTT
Found at i:98962154 original size:3 final size:3
Alignment explanation
Indices: 98962146--98962209 Score: 103
Period size: 3 Copynumber: 21.0 Consensus size: 3
98962136 TAAAGAGTGT
98962146 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
98962194 T-A TACA TGAA TAA TAA
1 TAA TA-A T-AA TAA TAA
98962210 CAGTAACAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.03
3 51 0.88
4 4 0.07
5 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:98962435 original size:3 final size:3
Alignment explanation
Indices: 98962427--98962472 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
98962417 TAGTACTAAG
* * * *
98962427 ATA ATA ATA ATA ATG ATA ATA AAA ATA AAA AAA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
98962473 CGACAATACA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:98963131 original size:10 final size:10
Alignment explanation
Indices: 98963112--98963152 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
98963102 TCAAAAAAGG
98963112 TATATTTTTT
1 TATATTTTTT
98963122 T-TATTTTTT
1 TATATTTTTT
98963131 TATATTTTTT
1 TATATTTTTT
* *
98963141 AATATATTTT
1 TATATTTTTT
98963151 TA
1 TA
98963153 ATATATGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TATATTTTTT
Found at i:98963140 original size:12 final size:12
Alignment explanation
Indices: 98963112--98963158 Score: 52
Period size: 11 Copynumber: 4.4 Consensus size: 12
98963102 TCAAAAAAGG
98963112 TATATTTTTT--
1 TATATTTTTTAA
98963122 T-TATTTTTT--
1 TATATTTTTTAA
98963131 TATATTTTTTAA
1 TATATTTTTTAA
98963143 TATA-TTTTTAA
1 TATATTTTTTAA
98963154 TATAT
1 TATAT
98963159 GTATGTATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.27
10 9 0.27
11 11 0.33
12 4 0.12
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TATATTTTTTAA
Found at i:98963152 original size:11 final size:11
Alignment explanation
Indices: 98963112--98963158 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
98963102 TCAAAAAAGG
**
98963112 TATATTTTTTT
1 TATATTTTTAA
*
98963123 TAT-TTTTTTA
1 TATATTTTTAA
98963133 TAT-TTTTTAA
1 TATATTTTTAA
98963143 TATATTTTTAA
1 TATATTTTTAA
98963154 TATAT
1 TATAT
98963159 GTATGTATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
10 18 0.55
11 15 0.45
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATATTTTTAA
Found at i:98963616 original size:15 final size:16
Alignment explanation
Indices: 98963596--98963633 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
98963586 AGGGTTAAAA
*
98963596 GGGTTTTAGGCT-GTT
1 GGGTTTTAGGATAGTT
*
98963611 GGGTTTTGGGATAGTT
1 GGGTTTTAGGATAGTT
98963627 GGGTTTT
1 GGGTTTT
98963634 GGGCAGGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.08, C:0.03, G:0.42, T:0.47
Consensus pattern (16 bp):
GGGTTTTAGGATAGTT
Found at i:98964659 original size:27 final size:26
Alignment explanation
Indices: 98964629--98964679 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
98964619 AATGTAAATC
* *
98964629 ATGTATATATATATATACAAAATAATA
1 ATGTATAAAAATATATA-AAAATAATA
*
98964656 ATGTATAAAAATATTTAAAAATAA
1 ATGTATAAAAATATATAAAAATAA
98964680 CCATGATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (26 bp):
ATGTATAAAAATATATAAAAATAATA
Found at i:98964823 original size:17 final size:17
Alignment explanation
Indices: 98964803--98964853 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
98964793 GAATAATATA
98964803 GAATAATTTAAAATAAT
1 GAATAATTTAAAATAAT
* *
98964820 GAATAGTATAAAAATGAAT
1 GAATAAT-TTAAAAT-AAT
*
98964839 -AATAACTTAAAATAA
1 GAATAATTTAAAATAA
98964854 ATAATAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
16 2 0.07
17 12 0.44
18 10 0.37
19 3 0.11
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (17 bp):
GAATAATTTAAAATAAT
Found at i:98967176 original size:19 final size:20
Alignment explanation
Indices: 98967154--98967203 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
98967144 GGTCTTTTCG
* *
98967154 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGAA
98967173 TGAAATGTAATGCAAATGAA
1 TGAAATGTAATGCAAATGAA
98967193 TGAAATG-AATG
1 TGAAATGTAATG
98967204 TGAAAAGAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGAA
Found at i:98971467 original size:27 final size:26
Alignment explanation
Indices: 98971362--98971475 Score: 88
Period size: 27 Copynumber: 4.3 Consensus size: 26
98971352 TGAAGGAAAC
* *
98971362 TTAAAATGGATAATACATAAATAATAG
1 TTAAAATGAATAATATATAAA-AATAG
** *
98971389 TTTAAAATGAATAACGTATAAAAATAT
1 -TTAAAATGAATAATATATAAAAATAG
* *
98971416 TTCAAAAT-AAGTAATATGT-ATAATAG
1 TT-AAAATGAA-TAATATATAAAAATAG
* *
98971442 TTAAAATGAATAATATATGTAAAATAT
1 TTAAAATGAATAATATAT-AAAAATAG
98971469 TTAAAAT
1 TTAAAAT
98971476 CTGTAATATC
Statistics
Matches: 68, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
25 12 0.18
26 13 0.19
27 26 0.38
28 17 0.25
ACGTcount: A:0.54, C:0.03, G:0.09, T:0.34
Consensus pattern (26 bp):
TTAAAATGAATAATATATAAAAATAG
Found at i:98971475 original size:52 final size:53
Alignment explanation
Indices: 98971382--98971484 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 53
98971372 TAATACATAA
*
98971382 ATAATAGTTTAAAATGAATAACGTATAAAAATATTTCAAAATAAGTAATATGT
1 ATAATAGTTTAAAATGAATAACATATAAAAATATTTCAAAATAAGTAATATGT
* * **
98971435 ATAATAG-TTAAAATGAATAATATATGTAAAATATTT-AAAATCTGTAATAT
1 ATAATAGTTTAAAATGAATAACATAT-AAAAATATTTCAAAATAAGTAATAT
98971485 CTTAAAGTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
52 28 0.64
53 16 0.36
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (53 bp):
ATAATAGTTTAAAATGAATAACATATAAAAATATTTCAAAATAAGTAATATGT
Found at i:98973732 original size:1 final size:1
Alignment explanation
Indices: 98973726--98973750 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
98973716 TGTTACGGTG
98973726 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
98973751 CTGATCACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:98986193 original size:19 final size:19
Alignment explanation
Indices: 98986169--98986208 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
98986159 AAATTACATG
98986169 CGAAGGATCAGATCTGTAT
1 CGAAGGATCAGATCTGTAT
98986188 CGAAGGATCAGATCTGTAT
1 CGAAGGATCAGATCTGTAT
98986207 CG
1 CG
98986209 TCTAAGCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (19 bp):
CGAAGGATCAGATCTGTAT
Found at i:98987727 original size:17 final size:17
Alignment explanation
Indices: 98987702--98987855 Score: 191
Period size: 17 Copynumber: 8.6 Consensus size: 17
98987692 ATTCAATATG
*
98987702 CAATATTAGATATGATA
1 CAATCTTAGATATGATA
98987719 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
98987736 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
98987755 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
98987773 TAATCTTAGATATGATA
1 CAATCTTAGATATGATA
98987790 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
98987809 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
98987827 TAATCTTAGATATGATA
1 CAATCTTAGATATGATA
98987844 TGCAATCTTAGA
1 --CAATCTTAGA
98987856 AGATATGATT
Statistics
Matches: 120, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
17 48 0.40
18 30 0.25
19 42 0.35
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:98987737 original size:36 final size:36
Alignment explanation
Indices: 98987697--98987855 Score: 234
Period size: 36 Copynumber: 4.4 Consensus size: 36
98987687 ATAATATTCA
*
98987697 ATATGCAATATTAGATATGATACAATCTTAGATATG
1 ATATGCAATCTTAGATATGATACAATCTTAGATATG
98987733 ATATGCAATCTTAGATATGATACAATCTTAGATATG
1 ATATGCAATCTTAGATATGATACAATCTTAGATATG
*
98987769 AT-TGTAATCTTAGATATGATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATGATA--CAATCTTAGATATG
**
98987806 ATA--CAATCTTAGATATGATTGTAATCTTAGATATG
1 ATATGCAATCTTAGATATGA-TACAATCTTAGATATG
98987841 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
98987856 AGATATGATT
Statistics
Matches: 112, Mismatches: 5, Indels: 11
0.88 0.04 0.09
Matches are distributed among these distances:
35 34 0.30
36 51 0.46
37 27 0.24
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (36 bp):
ATATGCAATCTTAGATATGATACAATCTTAGATATG
Found at i:98987784 original size:54 final size:54
Alignment explanation
Indices: 98987702--98987855 Score: 274
Period size: 54 Copynumber: 2.9 Consensus size: 54
98987692 ATTCAATATG
* **
98987702 CAATATTAGATATGA-TACAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGTAATCTTAGATATGATATGCAATCTTAGATATGATA
98987755 CAATCTTAGATATGATTGTAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGTAATCTTAGATATGATATGCAATCTTAGATATGATA
98987809 CAATCTTAGATATGATTGTAATCTTAGATATGATATGCAATCTTAGA
1 CAATCTTAGATATGATTGTAATCTTAGATATGATATGCAATCTTAGA
98987856 AGATATGATT
Statistics
Matches: 97, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
53 14 0.14
54 83 0.86
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (54 bp):
CAATCTTAGATATGATTGTAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:98987862 original size:17 final size:19
Alignment explanation
Indices: 98987697--98987855 Score: 235
Period size: 19 Copynumber: 8.8 Consensus size: 19
98987687 ATAATATTCA
*
98987697 ATATGCAATATTAGATATG
1 ATATGCAATCTTAGATATG
98987716 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
98987733 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
98987752 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
*
98987769 AT-TGTAATCTTAGATATG
1 ATATGCAATCTTAGATATG
98987787 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
98987806 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
*
98987823 AT-TGTAATCTTAGATATG
1 ATATGCAATCTTAGATATG
98987841 ATATGCAATCTTAGA
1 ATATGCAATCTTAGA
98987856 AGATATGATT
Statistics
Matches: 127, Mismatches: 5, Indels: 16
0.86 0.03 0.11
Matches are distributed among these distances:
17 48 0.38
18 30 0.24
19 49 0.39
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:98987881 original size:22 final size:22
Alignment explanation
Indices: 98987834--98987878 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
98987824 TTGTAATCTT
*
98987834 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
98987856 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
98987879 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:98990584 original size:17 final size:17
Alignment explanation
Indices: 98990562--98990595 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
98990552 AATAAGCTTC
98990562 ACAACCCTTTCTCACAA
1 ACAACCCTTTCTCACAA
98990579 ACAACCCTTTCTCACAA
1 ACAACCCTTTCTCACAA
98990596 TACTTAATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (17 bp):
ACAACCCTTTCTCACAA
Found at i:99001346 original size:20 final size:22
Alignment explanation
Indices: 99001315--99001356 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
99001305 TGAAAATAGT
99001315 TAAATGTTGTGTTAAT-TTTAC
1 TAAATGTTGTGTTAATGTTTAC
99001336 TAAAT-TTGTGTTAATGTTTAC
1 TAAATGTTGTGTTAATGTTTAC
99001357 AGTCAATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.52
Consensus pattern (22 bp):
TAAATGTTGTGTTAATGTTTAC
Found at i:99002154 original size:5 final size:5
Alignment explanation
Indices: 99002144--99002173 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
99002134 CCAATTAGTA
99002144 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
99002174 TTTAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:99016297 original size:50 final size:50
Alignment explanation
Indices: 99016222--99016322 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
99016212 TCTTATTAGA
99016222 TGCCGCAGATCCCCACATTGTCACTACCACATCGAATGAGGAAATCCCTC
1 TGCCGCAGATCCCCACATTGTCACTACCACATCGAATGAGGAAATCCCTC
*
99016272 TGCCGCAGATCCCCATATTGTCACTACCACATCGAATGAGGAAATCCCTC
1 TGCCGCAGATCCCCACATTGTCACTACCACATCGAATGAGGAAATCCCTC
99016322 T
1 T
99016323 TACGGTACTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.28, C:0.35, G:0.16, T:0.22
Consensus pattern (50 bp):
TGCCGCAGATCCCCACATTGTCACTACCACATCGAATGAGGAAATCCCTC
Found at i:99022458 original size:12 final size:13
Alignment explanation
Indices: 99022421--99022455 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
99022411 CAGAAATTAT
99022421 AAAGAAAATAAAG
1 AAAGAAAATAAAG
99022434 AAAGAAATAATAAAG
1 AAAG-AA-AATAAAG
99022449 AAAGAAA
1 AAAGAAA
99022456 TAATGTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.25
14 4 0.20
15 11 0.55
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (13 bp):
AAAGAAAATAAAG
Found at i:99022478 original size:15 final size:18
Alignment explanation
Indices: 99022430--99022483 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 18
99022420 TAAAGAAAAT
99022430 AAAGAAAGAAATAA--T-
1 AAAGAAAGAAATAATGTA
99022445 AAAGAAAGAAATAATGTA
1 AAAGAAAGAAATAATGTA
99022463 AAAGAAA-AAA-AA-GTA
1 AAAGAAAGAAATAATGTA
99022478 AAAGAA
1 AAAGAA
99022484 TTATATATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
15 23 0.64
16 2 0.06
17 4 0.11
18 7 0.19
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (18 bp):
AAAGAAAGAAATAATGTA
Found at i:99027919 original size:14 final size:14
Alignment explanation
Indices: 99027900--99027931 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
99027890 AGGTCATTTA
99027900 GCCCAACCAAACTG
1 GCCCAACCAAACTG
*
99027914 GCCCAATCAAACTG
1 GCCCAACCAAACTG
99027928 GCCC
1 GCCC
99027932 GGTGATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.44, G:0.16, T:0.09
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:99033040 original size:14 final size:14
Alignment explanation
Indices: 99033021--99033052 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
99033011 AGGTCATTTA
99033021 GCCCAACCAAACTG
1 GCCCAACCAAACTG
99033035 GCCCAACCAAACTG
1 GCCCAACCAAACTG
99033049 GCCC
1 GCCC
99033053 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:99033971 original size:12 final size:12
Alignment explanation
Indices: 99033954--99033978 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99033944 GGTGTTCAGT
99033954 CGGTTAACCGAC
1 CGGTTAACCGAC
99033966 CGGTTAACCGAC
1 CGGTTAACCGAC
99033978 C
1 C
99033979 CGAAATTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:99034153 original size:9 final size:9
Alignment explanation
Indices: 99034139--99034219 Score: 117
Period size: 9 Copynumber: 8.6 Consensus size: 9
99034129 TTTGGTTAAA
99034139 AATTACCCG
1 AATTACCCG
99034148 AATTACCCG
1 AATTACCCG
99034157 AATTACCCG
1 AATTACCCG
*
99034166 ACTTACCCG
1 AATTACCCG
99034175 AATTACCCG
1 AATTACCCG
99034184 AAAATTACCCG
1 --AATTACCCG
99034195 AAAATTACCCG
1 --AATTACCCG
99034206 AATTACCCG
1 AATTACCCG
99034215 AATTA
1 AATTA
99034220 AATCACTACA
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
9 48 0.71
11 20 0.29
ACGTcount: A:0.37, C:0.31, G:0.10, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:99034248 original size:17 final size:17
Alignment explanation
Indices: 99034226--99034286 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
99034216 ATTAAATCAC
99034226 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
99034243 TACATAAATCTTTGAATCAC
1 TACAT-AA--TTAAAAACAT
*
99034263 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
99034280 TACATAA
1 TACATAA
99034287 GTCTTTGAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 17 0.53
18 2 0.06
19 2 0.06
20 11 0.34
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:99034268 original size:20 final size:20
Alignment explanation
Indices: 99034243--99034306 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
99034233 TTAAAAACAT
99034243 TACATAAATCTTTGAATCAC
1 TACATAAATCTTTGAATCAC
*** *
99034263 TACAT-AAT-TAAAAAT-AT
1 TACATAAATCTTTGAATCAC
*
99034280 TACATAAGTCTTTGAATCAC
1 TACATAAATCTTTGAATCAC
99034300 TACATAA
1 TACATAA
99034307 TTAAAAATAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 7 0.22
20 13 0.41
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (20 bp):
TACATAAATCTTTGAATCAC
Found at i:99034326 original size:37 final size:37
Alignment explanation
Indices: 99034220--99034332 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
99034210 ACCCGAATTA
* *
99034220 AATCACTACATAATTAAAAACATTACATAAATCTTTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
99034257 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
*
99034294 AATCACTACATAATTAAAAATATTACACAAGTC-TTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
99034330 AAT
1 AAT
99034333 TAAAACATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 6 0.08
37 67 0.92
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (37 bp):
AATCACTACATAATTAAAAATATTACATAAGTCTTTG
Found at i:99034400 original size:24 final size:24
Alignment explanation
Indices: 99034373--99034431 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
99034363 ATTCTCCATT
*
99034373 TATATCCATTTCATCTTTCCAAAA
1 TATATCCATTTCATCTCTCCAAAA
*
99034397 TATATTCATTTCATCTCTCCAAAA
1 TATATCCATTTCATCTCTCCAAAA
*
99034421 TATCTCCATTT
1 TATATCCATTT
99034432 GCATTAAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (24 bp):
TATATCCATTTCATCTCTCCAAAA
Found at i:99037510 original size:16 final size:16
Alignment explanation
Indices: 99037489--99037522 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
99037479 TTTTTTTTCT
*
99037489 TACATTAATTATAATA
1 TACATTAATTACAATA
99037505 TACATTAATTACAATA
1 TACATTAATTACAATA
99037521 TA
1 TA
99037523 TTCAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (16 bp):
TACATTAATTACAATA
Found at i:99038439 original size:16 final size:17
Alignment explanation
Indices: 99038418--99038458 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
99038408 GCCTAAGAGA
99038418 AAATTGGGCT-GGATTT
1 AAATTGGGCTGGGATTT
*
99038434 AAATTGGGCTGGGTTTT
1 AAATTGGGCTGGGATTT
99038451 AAATTGGG
1 AAATTGGG
99038459 AGGGAGTAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.24, C:0.05, G:0.34, T:0.37
Consensus pattern (17 bp):
AAATTGGGCTGGGATTT
Found at i:99050262 original size:26 final size:29
Alignment explanation
Indices: 99050209--99050264 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 29
99050199 AGGTTTCCAT
* *
99050209 TGATGAATCTTGTGATTTTTGATGTTATA
1 TGATGAATCTTGTGAATGTTGATGTTATA
99050238 TGATGAAT-TTG-GAATGTTGAT-TTATA
1 TGATGAATCTTGTGAATGTTGATGTTATA
99050264 T
1 T
99050265 TTAAAAGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.24
27 8 0.32
28 3 0.12
29 8 0.32
ACGTcount: A:0.27, C:0.02, G:0.21, T:0.50
Consensus pattern (29 bp):
TGATGAATCTTGTGAATGTTGATGTTATA
Found at i:99054924 original size:3 final size:3
Alignment explanation
Indices: 99054916--99054953 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
99054906 TTCCAAAAGT
99054916 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
99054954 GTTTAATCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:99055026 original size:30 final size:30
Alignment explanation
Indices: 99054991--99055064 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
99054981 GGCTTAAGAA
* * *
99054991 AGAATTTCAAAAACTTTTA-TAAATTTACTT
1 AGAATTT-AAAAAATTTTAGAAAATTTAATT
* *
99055021 GGAATTTTTAAAAATTTTAGAAAATTTAATT
1 AGAA-TTTAAAAAATTTTAGAAAATTTAATT
99055052 AGAATTTAAAAAA
1 AGAATTTAAAAAA
99055065 ATTTCATGGA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
30 20 0.57
31 15 0.43
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.41
Consensus pattern (30 bp):
AGAATTTAAAAAATTTTAGAAAATTTAATT
Found at i:99055375 original size:53 final size:51
Alignment explanation
Indices: 99055293--99055393 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 51
99055283 TGGTTAACTT
99055293 TTTTTAAAGAAATAAAAAATTATAAAAATAATTATTTAACTTATCAACACG
1 TTTTTAAAGAAATAAAAAATTATAAAAATAATTATTTAACTTATCAACACG
99055344 TTTTTAAAGAAATTATAAAAAATTAT-AAAATAATTATTTAACTTATCAAC
1 TTTTTAAAG-AA--ATAAAAAATTATAAAAATAATTATTTAACTTATCAAC
99055394 TTCGCCTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
51 9 0.19
52 2 0.04
53 24 0.51
54 12 0.26
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.38
Consensus pattern (51 bp):
TTTTTAAAGAAATAAAAAATTATAAAAATAATTATTTAACTTATCAACACG
Done.