Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 300 of 332
Found at i:99399042 original size:19 final size:15
Alignment explanation
Indices: 99399001--99399029 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99398991 CTAATAATAT
99399001 TAATAATAAATATAA
1 TAATAATAAATATAA
99399016 TAATAATAAATATA
1 TAATAATAAATATA
99399030 TATGCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TAATAATAAATATAA
Found at i:99400805 original size:14 final size:14
Alignment explanation
Indices: 99400782--99400811 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
99400772 GATTTTTTTG
*
99400782 AAACATAAATTGAA
1 AAACAGAAATTGAA
99400796 AAACAGAAATTGAA
1 AAACAGAAATTGAA
99400810 AA
1 AA
99400812 TACCTCGGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (14 bp):
AAACAGAAATTGAA
Found at i:99400917 original size:72 final size:72
Alignment explanation
Indices: 99400790--99400936 Score: 251
Period size: 72 Copynumber: 2.0 Consensus size: 72
99400780 TGAAACATAA
* *
99400790 ATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATA
1 ATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTAGCAATA
99400855 TGAGTTG
66 TGAGTTG
*
99400862 ATTGTAAAAA-AGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTAGTAAT
1 ATTG-AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTAGCAAT
99400926 ATGAGTTG
65 ATGAGTTG
99400934 ATT
1 ATT
99400937 TTTTTCGAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
72 66 0.93
73 5 0.07
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (72 bp):
ATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTAGCAATA
TGAGTTG
Found at i:99401030 original size:90 final size:90
Alignment explanation
Indices: 99400862--99401030 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 90
99400852 ATATGAGTTG
* * * * ** *
99400862 ATTGTAAAAAAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTAGTAATA
1 ATTGTAAAAAAGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCACCTCTAGCAATA
** *
99400927 TGAGTTGATTTTTTTCGAAACATGA
66 CAAGTTGACTTTTTTCGAAACATGA
* *
99400952 ATTG-AAAAATAGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCGCCTCTCGCAAT
1 ATTGTAAAAA-AGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCACCTCTAGCAAT
99401016 ACAAGTTGACTTTTT
65 ACAAGTTGACTTTTT
99401031 AAAAAAATAA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
89 5 0.08
90 61 0.92
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (90 bp):
ATTGTAAAAAAGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCACCTCTAGCAATA
CAAGTTGACTTTTTTCGAAACATGA
Found at i:99401052 original size:90 final size:90
Alignment explanation
Indices: 99400862--99401050 Score: 202
Period size: 90 Copynumber: 2.1 Consensus size: 90
99400852 ATATGAGTTG
* * * * ** *
99400862 ATTGTAAAAA-AGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTAGTAAT
1 ATTG-AAAAATAGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCACCTCTAGCAAT
** * ** *
99400926 ATGAGTTGATTTTTTTCGAAACATGA
65 ACAAGTTGATCTTTTTAAAAAAATGA
* *
99400952 ATTGAAAAATAGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCGCCTCTCGCAATA
1 ATTGAAAAATAGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCACCTCTAGCAATA
99401017 CAAGTTGA-CTTTTTAAAAAAATAAGA
66 CAAGTTGATCTTTTTAAAAAAAT--GA
99401043 ATTGAAAA
1 ATTGAAAA
99401051 TACCTCAGCG
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
89 15 0.19
90 56 0.69
91 10 0.12
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.27
Consensus pattern (90 bp):
ATTGAAAAATAGAAATTGAAAATACCTCGACATATAACCCAAGGCTCAACTCACCTCTAGCAATA
CAAGTTGATCTTTTTAAAAAAATGA
Found at i:99401131 original size:14 final size:14
Alignment explanation
Indices: 99401112--99401139 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
99401102 TTTTTTTGAC
99401112 ACAGAAATTGAAAA
1 ACAGAAATTGAAAA
99401126 ACAGAAATTGAAAA
1 ACAGAAATTGAAAA
99401140 TACCTCGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
ACAGAAATTGAAAA
Found at i:99401140 original size:89 final size:89
Alignment explanation
Indices: 99401040--99401259 Score: 286
Period size: 89 Copynumber: 2.5 Consensus size: 89
99401030 TAAAAAAATA
* * *
99401040 AGAATTGAAAATACCTCAGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAATTGAAAATACCTCAGCGTGTATCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTAATTT
* *
99401105 TTTTG-ACACAGAAATTGAAAAAC
66 TTATGAAAACAGAAATTGAAAAAC
* * *
99401128 AGAAATTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTAAT
1 AG-AATTGAAAATACCTCAG-CGTGTATCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTAAT
*
99401192 TTTTATGAAAAACAGAATTTGAAAAAC
64 TTTTATG-AAAACAGAAATTGAAAAAC
* *
99401219 AGAATTGAAAATACCTCA--GTGTCTCTTGAGGCTCAACTCAC
1 AGAATTGAAAATACCTCAGCGTGTATCCTGAGGCTCAACTCAC
99401260 TTTTCGTGTT
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
88 21 0.19
89 59 0.52
90 15 0.13
91 18 0.16
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (89 bp):
AGAATTGAAAATACCTCAGCGTGTATCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTAATTT
TTATGAAAACAGAAATTGAAAAAC
Found at i:99401226 original size:13 final size:14
Alignment explanation
Indices: 99401197--99401229 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
99401187 TTAATTTTTA
99401197 TGAAAAACAGAATT
1 TGAAAAACAGAATT
99401211 TGAAAAACAGAA-T
1 TGAAAAACAGAATT
99401224 TGAAAA
1 TGAAAA
99401230 TACCTCAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.61, C:0.06, G:0.15, T:0.18
Consensus pattern (14 bp):
TGAAAAACAGAATT
Found at i:99401870 original size:12 final size:12
Alignment explanation
Indices: 99401847--99401879 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
99401837 ATATATATTT
99401847 TAAAAAATAAAAG
1 TAAAAAA-AAAAG
99401860 TAAAAAAAAAAG
1 TAAAAAAAAAAG
99401872 -AAAAAAAA
1 TAAAAAAAA
99401880 TTTACCTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 5 0.25
13 7 0.35
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (12 bp):
TAAAAAAAAAAG
Found at i:99402601 original size:11 final size:13
Alignment explanation
Indices: 99402576--99402600 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99402566 CGTGCATTTT
99402576 TTTATATAATATA
1 TTTATATAATATA
99402589 TTTATATAATAT
1 TTTATATAATAT
99402601 TATTAATAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTATATAATATA
Found at i:99402696 original size:14 final size:15
Alignment explanation
Indices: 99402672--99402703 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
99402662 ATTCTAACAC
99402672 TATATTATATATATG
1 TATATTATATATATG
99402687 TATA-TATATATATG
1 TATATTATATATATG
99402701 TAT
1 TAT
99402704 GTATTTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (15 bp):
TATATTATATATATG
Found at i:99402779 original size:21 final size:21
Alignment explanation
Indices: 99402753--99402796 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
99402743 TATATTCTTA
99402753 TATTATGTGTATTAAATGTAT
1 TATTATGTGTATTAAATGTAT
* * *
99402774 TATTATTTTTATTATATGTAT
1 TATTATGTGTATTAAATGTAT
99402795 TA
1 TA
99402797 CGTATATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (21 bp):
TATTATGTGTATTAAATGTAT
Found at i:99406594 original size:23 final size:24
Alignment explanation
Indices: 99406559--99406759 Score: 157
Period size: 23 Copynumber: 8.2 Consensus size: 24
99406549 TCATTTCTAA
*
99406559 TATATATATTGTATATGTTTTTAT-T
1 TATAT-TA-TGTATATATTTTTATAT
99406584 TATATTATGTATATATTTTTA-A-
1 TATATTATGTATATATTTTTATAT
*
99406606 TATTATTA-GTTATATATTTTTTATAC
1 TA-TATTATG-TATATA-TTTTTATAT
99406632 TAT-TTCATGTATATATTTTTATAT
1 TATATT-ATGTATATATTTTTATAT
* *
99406656 TATCTTATGTATATATTTTTAATAAC
1 TATATTATGTATATATTTTT-AT-AT
* * *
99406682 TATATTATGTATGTATTTTTAACAC
1 TATATTATGTATATATTTTT-ATAT
* *
99406707 TATATTATGTACATACTTTTA-A-
1 TATATTATGTATATATTTTTATAT
*
99406729 TATTATTATGTATTTATTTTTA-AT
1 TA-TATTATGTATATATTTTTATAT
99406753 ATATATT
1 -TATATT
99406760 TACATATTTA
Statistics
Matches: 150, Mismatches: 12, Indels: 29
0.79 0.06 0.15
Matches are distributed among these distances:
22 5 0.03
23 42 0.28
24 40 0.27
25 39 0.26
26 24 0.16
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (24 bp):
TATATTATGTATATATTTTTATAT
Found at i:99406646 original size:48 final size:48
Alignment explanation
Indices: 99406551--99406759 Score: 198
Period size: 48 Copynumber: 4.3 Consensus size: 48
99406541 TATTATTATC
* * *
99406551 ATTTCTAATATATA-TATTGTATATGTTTTT-AT-TTATATTATGTATAT
1 ATTTTTAATATATATTA-TGTATATATTTTTAATACTAT-TTATGTATAT
*
99406598 ATTTTTAATAT-TATTA-GTTATATATTTTTTATACTATTTCATGTATAT
1 ATTTTTAATATATATTATG-TATATATTTTTAATACTATTT-ATGTATAT
* *
99406646 ATTTTT-ATATTATCTTATGTATATATTTTTAATAACTATATTATGTATGT
1 ATTTTTAATA-TATATTATGTATATATTTTTAAT-ACTAT-TTATGTATAT
* * * * *
99406696 ATTTTTAACACTATATTATGTACATACTTTTAATATTA-TTATGTATTT
1 ATTTTTAATA-TATATTATGTATATATTTTTAATACTATTTATGTATAT
99406744 ATTTTTAATATATATT
1 ATTTTTAATATATATT
99406760 TACATATTTA
Statistics
Matches: 137, Mismatches: 14, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
45 1 0.01
46 12 0.09
47 25 0.18
48 36 0.26
49 17 0.12
50 22 0.16
51 24 0.18
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (48 bp):
ATTTTTAATATATATTATGTATATATTTTTAATACTATTTATGTATAT
Found at i:99406651 original size:26 final size:25
Alignment explanation
Indices: 99406570--99406759 Score: 164
Period size: 25 Copynumber: 7.8 Consensus size: 25
99406560 ATATATATTG
*
99406570 TATATGTTTTTAT-TTATATTATGTA
1 TATAT-TTTTTATACTATATTATGTA
*
99406595 TATATTTTTAATA-T-TATTA-GTTA
1 TATATTTTTTATACTATATTATG-TA
99406618 TATATTTTTTATACTAT-TTCATGTA
1 TATATTTTTTATACTATATT-ATGTA
* *
99406643 TATA-TTTTTATATTATCTTATGTA
1 TATATTTTTTATACTATATTATGTA
*
99406667 TATATTTTTAATAACTATATTATGTA
1 TATATTTTTTAT-ACTATATTATGTA
* * *
99406693 TGTATTTTTAACACTATATTATGTA
1 TATATTTTTTATACTATATTATGTA
* * *
99406718 CATACTTTTAATA-T-TATTATGTA
1 TATATTTTTTATACTATATTATGTA
* *
99406741 TTTATTTTTAATA-TATATT
1 TATATTTTTTATACTATATT
99406760 TACATATTTA
Statistics
Matches: 140, Mismatches: 15, Indels: 21
0.80 0.09 0.12
Matches are distributed among these distances:
22 1 0.01
23 39 0.28
24 35 0.25
25 43 0.31
26 22 0.16
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (25 bp):
TATATTTTTTATACTATATTATGTA
Found at i:99406767 original size:25 final size:23
Alignment explanation
Indices: 99406723--99406770 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
99406713 ATGTACATAC
**
99406723 TTTTAATATTATTATGTATTTAT
1 TTTTAATATTATTACATATTTAT
99406746 TTTTAATATATATTTACATATTTAT
1 TTTTAATAT-TA-TTACATATTTAT
99406771 GTAGTATTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 2 0.10
25 10 0.48
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
TTTTAATATTATTACATATTTAT
Found at i:99406946 original size:18 final size:18
Alignment explanation
Indices: 99406908--99406942 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
99406898 TGTATGTCGT
*
99406908 TATTATTAGTTATTTTTA
1 TATTATTAGCTATTTTTA
99406926 TATTATTA-CTATTTTTA
1 TATTATTAGCTATTTTTA
99406943 ATATATATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (18 bp):
TATTATTAGCTATTTTTA
Found at i:99407178 original size:6 final size:6
Alignment explanation
Indices: 99407167--99407192 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
99407157 TCGATATTAG
99407167 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
99407193 AAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:99408296 original size:33 final size:33
Alignment explanation
Indices: 99408248--99408334 Score: 138
Period size: 33 Copynumber: 2.6 Consensus size: 33
99408238 GGGCCCACAC
* *
99408248 GCCCATGTGGCTCACACGGCCCAACTTGGCCTT
1 GCCCGTGTGGATCACACGGCCCAACTTGGCCTT
99408281 GCCCGTGTGGATCACACGGCCCAACTTGGCCTT
1 GCCCGTGTGGATCACACGGCCCAACTTGGCCTT
* *
99408314 GCTCGTGTGGATTACACGGCC
1 GCCCGTGTGGATCACACGGCC
99408335 TGGCCTAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.15, C:0.36, G:0.28, T:0.22
Consensus pattern (33 bp):
GCCCGTGTGGATCACACGGCCCAACTTGGCCTT
Found at i:99411288 original size:85 final size:85
Alignment explanation
Indices: 99411138--99411443 Score: 337
Period size: 85 Copynumber: 3.6 Consensus size: 85
99411128 AGATAAAAAC
* * * **
99411138 ATTTGCAGTTACTGCCACTTGTTGTGAGTGCATAACATGGTT-GCAGATTAAACAAACTGTAATT
1 ATTTGCAGTTACTGCCACTTGTTGTAAGTGCACAACAT-ATTCGCAGATTAAACAAACTGCCATT
* *
99411202 GGG-GTTGTGGACGATCCACAT
65 GGGTTTTGTGGA-GAGCCACAT
** * * *
99411223 ATTTTTAGTTACTACTACTTGTTGTAAGTGCACAACATATTCGCAGATTAAACAATCTGCCATTG
1 ATTTGCAGTTACTGCCACTTGTTGTAAGTGCACAACATATTCGCAGATTAAACAAACTGCCATTG
99411288 GGTTTTGTGGAGAGCCACAT
66 GGTTTTGTGGAGAGCCACAT
* * * * * * * *
99411308 ATTTGCGGTTATTGCCACTTGTTATGAGTGCACAACATGTTCGCAAATTAAACAAACTCCCACTG
1 ATTTGCAGTTACTGCCACTTGTTGTAAGTGCACAACATATTCGCAGATTAAACAAACTGCCATTG
99411373 GGTTTTGTGGATGAGCCACAT
66 GGTTTTGTGGA-GAGCCACAT
* * * *
99411394 ATTTGCAGTTATTGCCACTTGTTGTGAGTGTGTACAACATATTTGCAGAT
1 ATTTGCAGTTACTGCCACTTGTTGT-A-AGTGCACAACATATTCGCAGAT
99411444 CATGAAAATA
Statistics
Matches: 183, Mismatches: 33, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
84 2 0.01
85 125 0.68
86 39 0.21
88 17 0.09
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34
Consensus pattern (85 bp):
ATTTGCAGTTACTGCCACTTGTTGTAAGTGCACAACATATTCGCAGATTAAACAAACTGCCATTG
GGTTTTGTGGAGAGCCACAT
Found at i:99423715 original size:105 final size:105
Alignment explanation
Indices: 99423533--99423734 Score: 368
Period size: 105 Copynumber: 1.9 Consensus size: 105
99423523 ACTTTGAAGC
* *
99423533 TTTAAGAGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTT
99423598 CCTCGATTTTCCAAACGCGAAATATTGCCTTATTCAAAAG
66 CCTCGATTTTCCAAACGCGAAATATTGCCTTATTCAAAAG
*
99423638 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTT
*
99423703 TCTCGATTTTCCAAACGCGAAATATTGCCTTA
66 CCTCGATTTTCCAAACGCGAAATATTGCCTTA
99423735 CTTAGAAAAA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 93 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (105 bp):
TTTAAAAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTT
CCTCGATTTTCCAAACGCGAAATATTGCCTTATTCAAAAG
Found at i:99426425 original size:44 final size:44
Alignment explanation
Indices: 99426291--99427221 Score: 628
Period size: 44 Copynumber: 21.2 Consensus size: 44
99426281 AGATTTGTGC
* ** * * * *
99426291 TCTTCAATCTACTTCATGCCAATACATG-AGACAAGATCTACTT
1 TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
* * *
99426334 TCTTCGATCTACTTTACCACCAGTATGGGAAGACAAGATCTG-TA
1 TCTTCGATCTACTTCA-CACCAATATAGGAAGACAAGATCTGCTA
* * * * * *
99426378 TCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGACCTGCTA
1 TCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTA
* * * *
99426422 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
* * *
99426466 TCTGCGATCTACTTCGCCACCAATAT-GAGAAGACAAGATCTGC-G
1 TCTTCGATCTACTTC-ACACCAATATAG-GAAGACAAGATCTGCTA
* * * * * * * * *
99426510 TCGTCGATCCACTTC-CAATCATTATGGGAAGATAGGACCTGTTA
1 TCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTA
* * * * *
99426554 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
* * * *
99426598 TCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-G
1 TCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTA
* * * * * * * *
99426642 TCGTCGATCCACTTC-CAATCATTATAGGAAGATAGGACCTGTTA
1 TCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTA
* * * * * *
99426686 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
*
99426730 TCTTCGATCTACTTCGCCACCAATAT-GGAAAGACAAGATCTG-TA
1 TCTTCGATCTACTTC-ACACCAATATAGG-AAGACAAGATCTGCTA
* * * * *
99426774 TCTTGGATCCACTTC-CTATCC-ATATAGGAAGATAGGACCTGCTA
1 TCTTCGATCTACTTCAC-A-CCAATATAGGAAGACAAGATCTGCTA
* * * *
99426818 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
* * * *
99426862 TCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-G
1 TCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTA
* * * * * * *
99426906 TCGTCGATCCACTTC-CAATCATTATAGGAAGATAAGACCTGTTA
1 TCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTA
* * * * *
99426950 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
* * *
99426994 TCTTTGATCTACTTCGC-CACAATATGGGAAGACAAGAT-TG-TA
1 TCTTCGATCTACTTCACAC-CAATATAGGAAGACAAGATCTGCTA
* * * * *
99427036 TCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGA-CTTGCTA
1 TCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATC-TGCTA
* * * *
99427080 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
* * * *
99427124 TCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-G
1 TCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTA
* * * * *
99427168 TCGTCGATCCACTTC-CTA-CAATATAGGAAGATAGGATCAGCTA
1 TCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTA
99427211 TCTTCGATCTA
1 TCTTCGATCTA
99427222 TTTCTTGCCC
Statistics
Matches: 671, Mismatches: 179, Indels: 76
0.72 0.19 0.08
Matches are distributed among these distances:
41 1 0.00
42 54 0.08
43 118 0.18
44 373 0.56
45 125 0.19
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
TCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTA
Found at i:99426519 original size:132 final size:132
Alignment explanation
Indices: 99426291--99427221 Score: 1447
Period size: 132 Copynumber: 7.1 Consensus size: 132
99426281 AGATTTGTGC
* * * * **
99426291 TCTTCAATCTACTTCATGCCAATACATG-AGACAAGATCTACTTTCTTCGATCTACTTTACCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
* ** * *
99426355 AGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
66 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
99426420 TA
131 TA
99426422 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
* * * * *
99426487 AATATGAGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATGGGAAGATAGGACCTGT
66 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
99426552 TA
131 TA
*
99426554 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
* * *
99426619 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGT
66 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
99426684 TA
131 TA
* * *
99426686 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
* ** * * *
99426751 AATATGGAAAGACAAGATCTGTATCTTGGATCCACTTCCTATCCATATAGGAAGATAGGACCTGC
66 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
99426816 TA
131 TA
99426818 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
* * * *
99426883 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAAGACCTGT
66 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
99426948 TA
131 TA
* **
99426950 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCCA-C
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
** * * *
99427014 AATATGGGAAGACAAGAT-TGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACTTGC
66 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
99427078 TA
131 TA
99427080 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
* *
99427145 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTA-CAATATAGGAAGATAGGATCAGC
66 AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
99427209 TA
131 TA
99427211 TCTTCGATCTA
1 TCTTCGATCTA
99427222 TTTCTTGCCC
Statistics
Matches: 732, Mismatches: 65, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
130 99 0.14
131 97 0.13
132 536 0.73
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (132 bp):
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACC
AATATGGGAAGACAAGATCTGCGTCGTCGATCCACTTCCTATCAATATAGGAAGATAGGACCTGC
TA
Found at i:99427496 original size:95 final size:95
Alignment explanation
Indices: 99427336--99427621 Score: 499
Period size: 95 Copynumber: 3.0 Consensus size: 95
99427326 CAGATCTGCA
99427336 ATCTTCAATCTATT-C-CTG-CAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC-CAT
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCAC-T
99427397 GTAGTCAGGGAGGTAAAATCTGCCATCTTTG
65 GTAGTCAGGGAGGTAAAATCTGCCATCTTTG
* * *
99427428 ATCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
99427493 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
99427523 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
99427588 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
99427618 ATCT
1 ATCT
99427622 GCTTCGCTGC
Statistics
Matches: 183, Mismatches: 7, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
92 14 0.08
93 1 0.01
94 3 0.02
95 164 0.90
96 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:99427855 original size:127 final size:131
Alignment explanation
Indices: 99427523--99427920 Score: 600
Period size: 128 Copynumber: 3.1 Consensus size: 131
99427513 GCCATCTTTG
*
99427523 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACA-GGAGATAGAGTTATCGGCTTCAATGTACTCCTCTG
* * *
99427588 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
65 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT--CTGCCAAATACAGAAAGACAAGATC
99427653 TGCA
128 TGCA
*
99427657 ATCTTCAATCTATTCCACTGCCAAATACAGGAGATAGAGTTATC-GCTTCACTGTACTCCTCTGT
1 ATCTTCAATCTATTCCACTGCCAAATACAGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
* *
99427721 AGTCAGGGAGGTAAAATCTGCCATCTTCGAT-TACTT-TGCCAAATACAGAAAGACAAGATCTGC
66 AGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCTGCCAAATACAGAAAGACAAGATCTGC
99427784 A
131 A
99427785 ATCTTCAATCTATTCCA-TGCCAAATACAGG-GATAGAGTTATCGGCTTCAATGTACTCCTCTGT
1 ATCTTCAATCTATTCCACTGCCAAATACAGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
99427848 AGTCAGGGAGGTAAAA--TG-CATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGA-AAGATC
66 AGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT--CTGCCAAATACA-GAAAGACAAGATC
99427909 TG-A
128 TGCA
99427912 TATCTTCAA
1 -ATCTTCAA
99427921 CCAGCTCTGC
Statistics
Matches: 247, Mismatches: 10, Indels: 20
0.89 0.04 0.07
Matches are distributed among these distances:
124 9 0.04
125 6 0.02
126 12 0.05
127 49 0.20
128 70 0.28
129 6 0.02
131 4 0.02
132 47 0.19
133 15 0.06
134 29 0.12
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (131 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
AGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCTGCCAAATACAGAAAGACAAGATCTGC
A
Found at i:99428056 original size:84 final size:85
Alignment explanation
Indices: 99427868--99428127 Score: 364
Period size: 84 Copynumber: 3.1 Consensus size: 85
99427858 GTAAAATGCA
* * * * *
99427868 TCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGAAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTA
99427933 CAAACGAGAGAGGCAAGGTTTG
65 C-AACGAGAGAGGCAAGGTTTG
* * *
99427955 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
*
99428020 -ACGAGAGTGGCAAGGTTTG
66 AACGAGAGAGGCAAGGTTTG
*
99428039 TCTTCGATCTGCTTCGCTGTCAATGC-GGAAGGCAAGATCTGATAACTT-AACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
* *
99428102 GACCGAGAGAGGCAAGGTTTA
66 -AACGAGAGAGGCAAGGTTTG
99428123 TCTTC
1 TCTTC
99428128 AATTTTTACT
Statistics
Matches: 155, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
82 14 0.09
83 20 0.13
84 64 0.41
86 38 0.25
87 19 0.12
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (85 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
AACGAGAGAGGCAAGGTTTG
Found at i:99439666 original size:106 final size:106
Alignment explanation
Indices: 99439481--99439677 Score: 367
Period size: 106 Copynumber: 1.9 Consensus size: 106
99439471 AAGCTTTAAG
*
99439481 AGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
99439546 TTTTCCAAACGCGAAATATTGCCTTATTCAAAAGTTTAAAA
66 TTTTCCAAACGCGAAATATTGCCTTATTCAAAAGTTTAAAA
* *
99439587 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
99439652 TTTTCCAAACGCGAAATATTGCCTTA
66 TTTTCCAAACGCGAAATATTGCCTTA
99439678 CTTAGAAAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 88 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (106 bp):
AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
TTTTCCAAACGCGAAATATTGCCTTATTCAAAAGTTTAAAA
Found at i:99440488 original size:74 final size:75
Alignment explanation
Indices: 99440398--99440549 Score: 281
Period size: 74 Copynumber: 2.0 Consensus size: 75
99440388 ATGTATGCAC
99440398 AATTTGAAATTATGAATATTAAAGTATTTAATATAGATAATAATATATAAGATGATAATAT-TG-
1 AATTTGAAATTATGAATATTAAAGTATTTAATATAGATAATAATATATAAGATGATAATATATGA
99440461 ATTTAAACCA
66 ATTTAAACCA
99440471 AATTTGTAAATTATGAATATTAAAGTATTTAATATAGATAATAATATATAAGATGATAATATATG
1 AATTTG-AAATTATGAATATTAAAGTATTTAATATAGATAATAATATATAAGATGATAATATATG
99440536 AATTTAAACCA
65 AATTTAAACCA
99440547 AAT
1 AAT
99440550 AAATAAACAG
Statistics
Matches: 76, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
73 6 0.08
74 55 0.72
75 2 0.03
76 13 0.17
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (75 bp):
AATTTGAAATTATGAATATTAAAGTATTTAATATAGATAATAATATATAAGATGATAATATATGA
ATTTAAACCA
Found at i:99456306 original size:14 final size:14
Alignment explanation
Indices: 99456268--99456297 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
99456258 TAATAAAATA
*
99456268 ATAAAAATATTTTT
1 ATAATAATATTTTT
99456282 ATAATAATATTTTT
1 ATAATAATATTTTT
99456296 AT
1 AT
99456298 TATTTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATAATAATATTTTT
Found at i:99457674 original size:18 final size:18
Alignment explanation
Indices: 99457651--99457686 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
99457641 GATATTCCCT
99457651 CAATCAAAATCTCAATTA
1 CAATCAAAATCTCAATTA
99457669 CAATCAAAATCTCAATTA
1 CAATCAAAATCTCAATTA
99457687 TTACTTGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (18 bp):
CAATCAAAATCTCAATTA
Found at i:99459154 original size:19 final size:19
Alignment explanation
Indices: 99459130--99459167 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
99459120 AACTTAAATC
99459130 ACATCTTTTACTATTTATT
1 ACATCTTTTACTATTTATT
99459149 ACATCTTTTACTATTTATT
1 ACATCTTTTACTATTTATT
99459168 GATAGTGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.00, T:0.58
Consensus pattern (19 bp):
ACATCTTTTACTATTTATT
Found at i:99471818 original size:2 final size:2
Alignment explanation
Indices: 99471811--99471849 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
99471801 AAATCAGAAT
* *
99471811 TA TA TA TA TA TA CA TA TA TA TA TA TA TG TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
99471850 TCATTACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:99472436 original size:16 final size:19
Alignment explanation
Indices: 99472395--99472437 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
99472385 GAAACAGAGC
99472395 AAGGAAAGAAAGAAAGAAA
1 AAGGAAAGAAAGAAAGAAA
99472414 AAGGGAAAG-AA-AAAG-AA
1 AA-GGAAAGAAAGAAAGAAA
99472431 AAGGAAA
1 AAGGAAA
99472438 ATTTAGGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.22
17 4 0.17
18 4 0.17
19 4 0.17
20 6 0.26
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (19 bp):
AAGGAAAGAAAGAAAGAAA
Found at i:99477628 original size:5 final size:5
Alignment explanation
Indices: 99477585--99477646 Score: 54
Period size: 5 Copynumber: 11.6 Consensus size: 5
99477575 ATAAAGTAAT
* *
99477585 AAATA ATAATA AAATA ATATATA ATATA TAATA AAATA AAATAA AAATA
1 AAATA A-AATA AAATA A-A-ATA AAATA AAATA AAATA AAAT-A AAATA
99477634 AAGA-A AAATA AAA
1 AA-ATA AAATA AAA
99477647 ATTGGGTTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
4 1 0.02
5 30 0.64
6 12 0.26
7 4 0.09
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (5 bp):
AAATA
Found at i:99481808 original size:68 final size:68
Alignment explanation
Indices: 99481687--99481838 Score: 187
Period size: 68 Copynumber: 2.2 Consensus size: 68
99481677 ATAGCTCGTT
* * *
99481687 GATTTAACATCACAGCTGATATCACTAGGGCTCGTTGATTTAAGATCACAGCCTCCAAACAACTC
1 GATTTAATATCACAGCTGATATCACTAAGACTCGTTGATTTAAGATCACAGCCTCCAAACAACTC
*
99481752 TCA
66 GCA
* * ** * * *
99481755 GATTTAATATCGCAGTTGATATCACTAAGACTCGTTGATTTAAGATCGTAGCCTTCAAATAGCTC
1 GATTTAATATCACAGCTGATATCACTAAGACTCGTTGATTTAAGATCACAGCCTCCAAACAACTC
*
99481820 GCT
66 GCA
*
99481823 GATTTAATACCACAGC
1 GATTTAATATCACAGC
99481839 ATCTAAACAG
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (68 bp):
GATTTAATATCACAGCTGATATCACTAAGACTCGTTGATTTAAGATCACAGCCTCCAAACAACTC
GCA
Found at i:99481829 original size:100 final size:100
Alignment explanation
Indices: 99481716--99481928 Score: 237
Period size: 100 Copynumber: 2.1 Consensus size: 100
99481706 TATCACTAGG
* * * * * *
99481716 GCTCGTTGATTTAAGATCACAGCCTCCAAACAACTCTCAGATTTAATATCGCAGTTGATATCACT
1 GCTCGCTGATTTAAGACCACAGCATCCAAACAACTCGCAGATTTAACATCGCAGTTAATATCACT
* *
99481781 AAGACTCGTTGATTTAAGATCGTAGCCTTCAAATA
66 AAGACTCGTTGATTTAAGATCGTAACCTCCAAATA
* * ** * **
99481816 GCTCGCTGATTTAATACCACAGCATCTAAACAGGTCGCTGATTTAACATCGCAGTTAATATCGTT
1 GCTCGCTGATTTAAGACCACAGCATCCAAACAACTCGCAGATTTAACATCGCAGTTAATATCACT
* * * *
99481881 AGGGCTCGTTGATTTAATATTGTAACCTCCAAATA
66 AAGACTCGTTGATTTAAGATCGTAACCTCCAAATA
* *
99481916 GCTCTCTAATTTA
1 GCTCGCTGATTTA
99481929 TTATTGCAAC
Statistics
Matches: 92, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (100 bp):
GCTCGCTGATTTAAGACCACAGCATCCAAACAACTCGCAGATTTAACATCGCAGTTAATATCACT
AAGACTCGTTGATTTAAGATCGTAACCTCCAAATA
Found at i:99481945 original size:168 final size:168
Alignment explanation
Indices: 99481686--99481997 Score: 392
Period size: 168 Copynumber: 1.9 Consensus size: 168
99481676 AATAGCTCGT
* *
99481686 TGATTTAACATCACAGCTGATATCACTAGGGCTCGTTGATTTAAGATCACAGCCTCCAAACAACT
1 TGATTTAACATCACAGCTAATATCACTAGGGCTCGTTGATTTAAGATCACAACCTCCAAACAACT
** * * *
99481751 CTCAGATTTAATATCGCAGTTGATATCACTAAGACTCGTTGATTTAAGATCGTAGCCTTCAAATA
66 CTCAGATTTAATATCGCAACTGATATCACTAAGACTCGCTAATTTAAGATCGCAGCCTTCAAATA
99481816 GCTCGCTGATTTAATACCACAGCATCTAAACAGGTCGC
131 GCTCGCTGATTTAATACCACAGCATCTAAACAGGTCGC
* * ** * *** * *
99481854 TGATTTAACATCGCAGTTAATATCGTTAGGGCTCGTTGATTTAATATTGTAACCTCCAAATAGCT
1 TGATTTAACATCACAGCTAATATCACTAGGGCTCGTTGATTTAAGATCACAACCTCCAAACAACT
* * * * * *
99481919 CTCTA-ATTTATTATTGCAACTGATATCATTAAGGCTCGCTAATTTAAGGTTGCAGCCTTCAAAT
66 CTC-AGATTTAATATCGCAACTGATATCACTAAGACTCGCTAATTTAAGATCGCAGCCTTCAAAT
*
99481983 AGCTCGTTGATTTAA
130 AGCTCGCTGATTTAA
99481998 GATCGCGACC
Statistics
Matches: 119, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
168 118 0.99
169 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (168 bp):
TGATTTAACATCACAGCTAATATCACTAGGGCTCGTTGATTTAAGATCACAACCTCCAAACAACT
CTCAGATTTAATATCGCAACTGATATCACTAAGACTCGCTAATTTAAGATCGCAGCCTTCAAATA
GCTCGCTGATTTAATACCACAGCATCTAAACAGGTCGC
Found at i:99487455 original size:49 final size:48
Alignment explanation
Indices: 99487396--99487518 Score: 140
Period size: 49 Copynumber: 2.5 Consensus size: 48
99487386 TAACGTACCT
*
99487396 TACTAGTGGCCCATCATTCATGCCAATCTAGTTAGCAACTAACATGCCC
1 TACTAGTGGCCCATCATTC-TGCCAACCTAGTTAGCAACTAACATGCCC
* * *
99487445 TACTAGTGGCCCATCTTATTCT-CCCACCTGGTTAGCAACTAGCATGCCC
1 TACTAGTGGCCCATC--ATTCTGCCAACCTAGTTAGCAACTAACATGCCC
* * *
99487494 TACCAATGGTCCATCATATCTGCCA
1 TACTAGTGGCCCATCAT-TCTGCCA
99487519 TTTTGTGTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
47 2 0.03
48 3 0.05
49 52 0.84
50 1 0.02
51 4 0.06
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (48 bp):
TACTAGTGGCCCATCATTCTGCCAACCTAGTTAGCAACTAACATGCCC
Found at i:99492017 original size:20 final size:20
Alignment explanation
Indices: 99491992--99492041 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
99491982 TGGCTTAAAA
99491992 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
99492012 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
99492029 GTGGTAGTGGATT
1 TTGGTAGTGGATT
99492042 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:99496645 original size:20 final size:20
Alignment explanation
Indices: 99496620--99496669 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
99496610 TGGCTTAAAA
99496620 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
99496640 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
99496657 GTGGTAGTGGATT
1 TTGGTAGTGGATT
99496670 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:99498771 original size:28 final size:28
Alignment explanation
Indices: 99498740--99498804 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
99498730 TAGTAAAAAC
* *
99498740 ACAAATATATTAATATATCAAAATTTAT
1 ACAAATATATAAATATACCAAAATTTAT
99498768 ACAAATCAT-TAAATATACCAAAATTTAT
1 ACAAAT-ATATAAATATACCAAAATTTAT
*
99498796 ATAAATATA
1 ACAAATATA
99498805 AAGTATCGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 2 0.06
28 28 0.88
29 2 0.06
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.35
Consensus pattern (28 bp):
ACAAATATATAAATATACCAAAATTTAT
Found at i:99519058 original size:24 final size:24
Alignment explanation
Indices: 99519030--99519078 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
99519020 ACCTTAAAAG
99519030 TCAGTCTTTAATAACCTTTTGTGT
1 TCAGTCTTTAATAACCTTTTGTGT
99519054 TCAGTCTTTAATAACCTTTTGTGT
1 TCAGTCTTTAATAACCTTTTGTGT
99519078 T
1 T
99519079 GTTATAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.51
Consensus pattern (24 bp):
TCAGTCTTTAATAACCTTTTGTGT
Found at i:99520263 original size:13 final size:13
Alignment explanation
Indices: 99520245--99520288 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
99520235 ACATTAACAT
*
99520245 TTAATTAAAATAA
1 TTAATTAAATTAA
*
99520258 TTAATTATATTAA
1 TTAATTAAATTAA
* *
99520271 TTATTTGAATTAA
1 TTAATTAAATTAA
99520284 TTAAT
1 TTAAT
99520289 AATTTTATAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TTAATTAAATTAA
Found at i:99520288 original size:17 final size:18
Alignment explanation
Indices: 99520260--99520293 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
99520250 TAAAATAATT
*
99520260 AATTATATTAATTATTTG
1 AATTATATTAATAATTTG
99520278 AATTA-ATTAATAATTT
1 AATTATATTAATAATTT
99520294 TATAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
AATTATATTAATAATTTG
Found at i:99520366 original size:22 final size:22
Alignment explanation
Indices: 99520320--99520367 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
99520310 CAAATTATAC
*
99520320 TAAGTATGAAAAGAAATAAATT
1 TAAGTATGAAAAGAAATAAAAT
99520342 TAAGTAT-AACAA-AAATCAAAAT
1 TAAGTATGAA-AAGAAAT-AAAAT
99520364 TAAG
1 TAAG
99520368 GTAAAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.60, C:0.04, G:0.10, T:0.25
Consensus pattern (22 bp):
TAAGTATGAAAAGAAATAAAAT
Found at i:99524830 original size:43 final size:44
Alignment explanation
Indices: 99524782--99524929 Score: 151
Period size: 43 Copynumber: 3.4 Consensus size: 44
99524772 TACCGAGATG
* * *
99524782 TGATTACATGTAAGACCATGTCAGGGACATCGGTATTGTAT-TT
1 TGATTACATGTAAGACCATGTCAGGGACATCGGCATCGTATATA
** * *
99524825 TGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCAGGGACATCGGCATCGTATATA
*** *
99524868 TGATTTTGTGTAAGACCATGTCTA-GGACATCGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTC-AGGGACATCGGCATCGTATATA
*
99524911 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
99524930 ATCTGGGATA
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
42 1 0.01
43 86 0.99
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCAGGGACATCGGCATCGTATATA
Found at i:99528571 original size:40 final size:39
Alignment explanation
Indices: 99528426--99528606 Score: 159
Period size: 39 Copynumber: 4.6 Consensus size: 39
99528416 ACTAGTTCGA
* ** * * ***
99528426 AGCCTGCGGGATTTTTGCCCGGACATATTTCCAGCGCGT
1 AGCCTGCGGGCTTTAAGCCCGGATATAATTCCAGCATAT
* * * *
99528465 AGCCTGCGGACCTTAAGTCC-GATTATAATTCCAGCACAT
1 AGCCTGCGGGCTTTAAGCCCGGA-TATAATTCCAGCATAT
* * * * *
99528504 AGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGTATAT
1 AGCCTGCGGGCTTTAAGCCCGGATATAATTCCAGCATAT
* *
99528543 AGCCAGCGGGTCTTTAAGGCCGGATATAATTCCAGCATAT
1 AGCCTGCGGG-CTTTAAGCCCGGATATAATTCCAGCATAT
99528583 AGCCTGCGGG-TTTAAGCCCGGATA
1 AGCCTGCGGGCTTTAAGCCCGGATA
99528607 CACATCAAAT
Statistics
Matches: 118, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 15 0.13
39 68 0.58
40 35 0.30
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (39 bp):
AGCCTGCGGGCTTTAAGCCCGGATATAATTCCAGCATAT
Found at i:99537664 original size:27 final size:27
Alignment explanation
Indices: 99537623--99537726 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 27
99537613 AAAAAATATT
**
99537623 AGATAGTCCAACGAGATAAGAAACATG
1 AGATAGTCCGTCGAGATAAGAAACATG
* * *
99537650 AGATAGTCCGTCGAGATAGGAAATACG
1 AGATAGTCCGTCGAGATAAGAAACATG
99537677 AGATAGTCCGTCGAGATAAGAAACATG
1 AGATAGTCCGTCGAGATAAGAAACATG
99537704 AGATAGTCCGTC-AGGATAAGAAA
1 AGATAGTCCGTCGA-GATAAGAAA
99537727 TACATGATAG
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 67 0.99
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.17
Consensus pattern (27 bp):
AGATAGTCCGTCGAGATAAGAAACATG
Found at i:99537681 original size:54 final size:53
Alignment explanation
Indices: 99537623--99537740 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 53
99537613 AAAAAATATT
*
99537623 AGATAGTCCAACGAGATAAGAAACATGAGATAGTCCGTC-GAGATAGGAAATAC
1 AGATAGTCCAACGAGATAAGAAACATGAGATAGTCCGTCAG-GATAAGAAATAC
**
99537676 GAGATAGTCCGTCGAGATAAGAAACATGAGATAGTCCGTCAGGATAAGAAATAC
1 -AGATAGTCCAACGAGATAAGAAACATGAGATAGTCCGTCAGGATAAGAAATAC
99537730 ATGATAGTCCA
1 A-GATAGTCCA
99537741 TCAGAATAGG
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
53 1 0.02
54 56 0.97
55 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.19
Consensus pattern (53 bp):
AGATAGTCCAACGAGATAAGAAACATGAGATAGTCCGTCAGGATAAGAAATAC
Found at i:99537722 original size:81 final size:80
Alignment explanation
Indices: 99537637--99537899 Score: 196
Period size: 81 Copynumber: 3.2 Consensus size: 80
99537627 AGTCCAACGA
99537637 GATAAGAAACATGAGATAGTCCGTCGAGATAGGAAATACGAGATAGTCCGTCGAGATAAGAAACA
1 GATAAGAAACATG-GATAGTCCGTCGAGATAGGAAATACGAGATAGTCCGTCGAGATAAGAAACA
*
99537702 TGAGATAGTCCGTCAG
65 TGGGATAGTCCGTCAG
* * * * * * *
99537718 GATAAGAAATACAT-GATAGTCCATC-AGAATAGGAAATACGGGATAATACGT-TAGGACAAAAA
1 GATAAG-AA-ACATGGATAGTCCGTCGAG-ATAGGAAATACGAGATAGTCCGTCGA-GATAAGAA
* * *
99537780 AGATGGGATAGTCCATCAA
62 ACATGGGATAGTCCGTCAG
* * * * * * * **
99537799 GACAAGCAATATGGGATAAAT-CGTCGAGACAGAAAACACGAGATAGTCCACCGAGAT-AGAAAA
1 GATAAGAAACAT-GGAT-AGTCCGTCGAGATAGGAAATACGAGATAGTCCGTCGAGATAAG-AAA
**
99537862 CATGGGATAGTTTGTCAG
63 CATGGGATAGTCCGTCAG
99537880 GATAAGAGACACA-GGATAGT
1 GATAAGA-A-ACATGGATAGT
99537900 TTGTTAAGAC
Statistics
Matches: 134, Mismatches: 36, Indels: 25
0.69 0.18 0.13
Matches are distributed among these distances:
79 3 0.02
80 7 0.05
81 110 0.82
82 8 0.06
83 6 0.04
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.18
Consensus pattern (80 bp):
GATAAGAAACATGGATAGTCCGTCGAGATAGGAAATACGAGATAGTCCGTCGAGATAAGAAACAT
GGGATAGTCCGTCAG
Found at i:99537762 original size:27 final size:27
Alignment explanation
Indices: 99537623--99537762 Score: 142
Period size: 27 Copynumber: 5.2 Consensus size: 27
99537613 AAAAAATATT
** * *
99537623 AGATAGTCCAACGAGATAAGAAACATG
1 AGATAGTCCGTCGAGATAAGAAATACG
*
99537650 AGATAGTCCGTCGAGATAGGAAATACG
1 AGATAGTCCGTCGAGATAAGAAATACG
* *
99537677 AGATAGTCCGTCGAGATAAGAAACATG
1 AGATAGTCCGTCGAGATAAGAAATACG
99537704 AGATAGTCCGTC-AGGATAAGAAATAC-
1 AGATAGTCCGTCGA-GATAAGAAATACG
* *
99537730 ATGATAGTCCATC-AGAATAGGAAATACG
1 A-GATAGTCCGTCGAG-ATAAGAAATACG
*
99537758 GGATA
1 AGATA
99537763 ATACGTTAGG
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 3 0.03
27 93 0.97
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (27 bp):
AGATAGTCCGTCGAGATAAGAAATACG
Found at i:99537883 original size:27 final size:27
Alignment explanation
Indices: 99537852--99537926 Score: 64
Period size: 27 Copynumber: 2.8 Consensus size: 27
99537842 TAGTCCACCG
99537852 AGATAGAAAACATGGGATAGTTTGTCA
1 AGATAGAAAACATGGGATAGTTTGTCA
* * *
99537879 GGATAAGAGACACA--GGATAGTTTGTTA
1 AGAT-AGA-AAACATGGGATAGTTTGTCA
* * *
99537906 AGACAGGAAATATGGGATAGT
1 AGATAGAAAACATGGGATAGT
99537927 CCATTAGGAT
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
25 3 0.08
26 2 0.06
27 24 0.67
28 3 0.08
29 4 0.11
ACGTcount: A:0.40, C:0.07, G:0.29, T:0.24
Consensus pattern (27 bp):
AGATAGAAAACATGGGATAGTTTGTCA
Found at i:99544470 original size:27 final size:27
Alignment explanation
Indices: 99544440--99544580 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
99544430 ATGACGAAGT
*
99544440 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
*
99544467 CACCAGA-ATAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
99544494 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
99544521 CACCA-AGACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
99544548 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
99544575 CACCAG
1 CACCAG
99544581 GACGCTTCCT
Statistics
Matches: 101, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
26 11 0.11
27 85 0.84
28 5 0.05
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:99544512 original size:54 final size:55
Alignment explanation
Indices: 99544440--99544580 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 55
99544430 ATGACGAAGT
* * *
99544440 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGA-ATAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
99544494 CACCAGATCAGATAATTGTGGCATAGCCACCA-AGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
99544548 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
99544581 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (55 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAGACAGATATATGTGGCAGAGC
Found at i:99546161 original size:26 final size:26
Alignment explanation
Indices: 99546131--99546212 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
99546121 TGAAATGCCC
99546131 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
99546157 ATCATGGAATATTTACATAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
99546183 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99546209 ATCA
1 ATCA
99546213 ATTTGTACCA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:99549872 original size:12 final size:12
Alignment explanation
Indices: 99549855--99549884 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
99549845 ACATGTCTCG
99549855 CACACGGCCTAC
1 CACACGGCCTAC
*
99549867 CACACGGGCTAC
1 CACACGGCCTAC
99549879 CACACG
1 CACACG
99549885 CCCGTGTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.47, G:0.20, T:0.07
Consensus pattern (12 bp):
CACACGGCCTAC
Found at i:99560119 original size:29 final size:29
Alignment explanation
Indices: 99560086--99560145 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
99560076 CCCCTACCAA
99560086 GAAAGATTCGATTTAGGTTGTCATTGATT
1 GAAAGATTCGATTTAGGTTGTCATTGATT
* *
99560115 GAAAGATTTGATTTGGGTTGTCATTGATT
1 GAAAGATTCGATTTAGGTTGTCATTGATT
99560144 GA
1 GA
99560146 TTGACCAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.27, T:0.42
Consensus pattern (29 bp):
GAAAGATTCGATTTAGGTTGTCATTGATT
Found at i:99563466 original size:27 final size:27
Alignment explanation
Indices: 99563428--99563482 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
99563418 TATTTTAAAA
*
99563428 CCTATGAACTTACTAAGCTTTCATAAG
1 CCTACGAACTTACTAAGCTTTCATAAG
99563455 CCTACGAACTTACTAAGCTTTCATAAG
1 CCTACGAACTTACTAAGCTTTCATAAG
99563482 C
1 C
99563483 TTACTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (27 bp):
CCTACGAACTTACTAAGCTTTCATAAG
Found at i:99565821 original size:35 final size:37
Alignment explanation
Indices: 99565740--99565832 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 37
99565730 ATGGGAAATG
**
99565740 CCATACCTACGTTTCTTAACTCAGTATGGATTTGATAATA
1 CCATACCTACGTTTCACAACTCAGTATGGA-TTG--AATA
*
99565780 CCATACCTACGTTTCACAACTCATTATGGA-TG-ATA
1 CCATACCTACGTTTCACAACTCAGTATGGATTGAATA
99565815 CCATACCTACGTTTCACA
1 CCATACCTACGTTTCACA
99565833 CTTTTCCATG
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
35 21 0.42
38 2 0.04
40 27 0.54
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.33
Consensus pattern (37 bp):
CCATACCTACGTTTCACAACTCAGTATGGATTGAATA
Found at i:99571014 original size:6 final size:6
Alignment explanation
Indices: 99571003--99571037 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
99570993 GTCAATATCC
* *
99571003 ATCATA ATCATA ACCATA ATCATA ATCATT ATCAT
1 ATCATA ATCATA ATCATA ATCATA ATCATA ATCAT
99571038 CGTAATCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (6 bp):
ATCATA
Found at i:99575806 original size:2 final size:2
Alignment explanation
Indices: 99575799--99575830 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
99575789 CCAACAACTT
99575799 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
99575831 AGGGAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:99578504 original size:164 final size:164
Alignment explanation
Indices: 99578233--99578556 Score: 639
Period size: 164 Copynumber: 2.0 Consensus size: 164
99578223 AAAACTAAGG
*
99578233 AATATACGTAAGTTCCTATCTGAGACAATAAGTTATGTGTGAAATCTTATTTTTGCAGGTGCCCG
1 AATATACGTAAGTTCCTATCTGAGACAATAAGTTATGTGTGAAATCTTATTTTTGAAGGTGCCCG
99578298 TGCATGTAATCAGGCAACAAACCATGTTCAAGTTCAGGCAACAATATTTCCATGTAACCACATTA
66 TGCATGTAATCAGGCAACAAACCATGTTCAAGTTCAGGCAACAATATTTCCATGTAACCACATTA
99578363 CAGATTTAAGAAAGAAGAAATTCCTCACCGCAAC
131 CAGATTTAAGAAAGAAGAAATTCCTCACCGCAAC
99578397 AATATACGTAAGTTCCTATCTGAGACAATAAGTTATGTGTGAAATCTTATTTTTGAAGGTGCCCG
1 AATATACGTAAGTTCCTATCTGAGACAATAAGTTATGTGTGAAATCTTATTTTTGAAGGTGCCCG
99578462 TGCATGTAATCAGGCAACAAACCATGTTCAAGTTCAGGCAACAATATTTCCATGTAACCACATTA
66 TGCATGTAATCAGGCAACAAACCATGTTCAAGTTCAGGCAACAATATTTCCATGTAACCACATTA
99578527 CAGATTTAAGAAAGAAGAAATTCCTCACCG
131 CAGATTTAAGAAAGAAGAAATTCCTCACCG
99578557 ACATGCAAGA
Statistics
Matches: 159, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 159 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (164 bp):
AATATACGTAAGTTCCTATCTGAGACAATAAGTTATGTGTGAAATCTTATTTTTGAAGGTGCCCG
TGCATGTAATCAGGCAACAAACCATGTTCAAGTTCAGGCAACAATATTTCCATGTAACCACATTA
CAGATTTAAGAAAGAAGAAATTCCTCACCGCAAC
Found at i:99581596 original size:24 final size:25
Alignment explanation
Indices: 99581569--99581616 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
99581559 CTTATTTCAT
99581569 TAAATAAAAAT-TTTAAAAATATAA
1 TAAATAAAAATATTTAAAAATATAA
* *
99581593 TAAATCAAATTCATTTAAAAATAT
1 TAAATAAAAAT-ATTTAAAAATAT
99581617 TAAAACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
26 11 0.55
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
TAAATAAAAATATTTAAAAATATAA
Found at i:99582340 original size:11 final size:11
Alignment explanation
Indices: 99582318--99582399 Score: 58
Period size: 11 Copynumber: 7.5 Consensus size: 11
99582308 TAAAACACCA
99582318 CAAAAGTAGCAC
1 CAAAA-TAGCAC
*
99582330 TAAAATAGCAC
1 CAAAATAGCAC
*
99582341 CAAAATAGCAT
1 CAAAATAGCAC
* *
99582352 CAAAACAGCTC
1 CAAAATAGCAC
* *
99582363 CAAAACAGCTC
1 CAAAATAGCAC
* * *
99582374 CGAAACAGCAA
1 CAAAATAGCAC
*
99582385 CAAAACAGCA-
1 CAAAATAGCAC
99582395 CAAAA
1 CAAAA
99582400 AAAACAGCAC
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
10 5 0.08
11 51 0.85
12 4 0.07
ACGTcount: A:0.54, C:0.27, G:0.11, T:0.09
Consensus pattern (11 bp):
CAAAATAGCAC
Found at i:99582349 original size:22 final size:23
Alignment explanation
Indices: 99582309--99582367 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
99582299 AAAGAACAAT
*
99582309 AAAACACCA-CAAAAGTAGCA-C
1 AAAACAGCACCAAAAGTAGCATC
*
99582330 TAAAATAGCACCAAAA-TAGCATC
1 -AAAACAGCACCAAAAGTAGCATC
*
99582353 AAAACAGCTCCAAAA
1 AAAACAGCACCAAAA
99582368 CAGCTCCGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 25 0.81
23 6 0.19
ACGTcount: A:0.56, C:0.25, G:0.08, T:0.10
Consensus pattern (23 bp):
AAAACAGCACCAAAAGTAGCATC
Found at i:99582620 original size:9 final size:9
Alignment explanation
Indices: 99582606--99582656 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
99582596 ATTGAAGAAA
99582606 CATCATCCT
1 CATCATCCT
99582615 CATCATCCT
1 CATCATCCT
99582624 CATCATCCT
1 CATCATCCT
* *
99582633 CATCGTCTT
1 CATCATCCT
* *
99582642 CATCGTCAT
1 CATCATCCT
99582651 CATCAT
1 CATCAT
99582657 TCTTGCAACT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35
Consensus pattern (9 bp):
CATCATCCT
Found at i:99586149 original size:20 final size:20
Alignment explanation
Indices: 99586124--99586173 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
99586114 AAAAACCTGC
*
99586124 AAGAAGAAGATGCAGCAGTG
1 AAGAAGAAGATGCAGCAGTA
99586144 AAGAAGAAGATGCAGCAGTA
1 AAGAAGAAGATGCAGCAGTA
99586164 AAGAAGAAGA
1 AAGAAGAAGA
99586174 AGAAGAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (20 bp):
AAGAAGAAGATGCAGCAGTA
Found at i:99586543 original size:14 final size:14
Alignment explanation
Indices: 99586524--99586550 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
99586514 AAAAAATATA
99586524 AGTAAAGTTAAAAG
1 AGTAAAGTTAAAAG
99586538 AGTAAAGTTAAAA
1 AGTAAAGTTAAAA
99586551 ATAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.19, T:0.22
Consensus pattern (14 bp):
AGTAAAGTTAAAAG
Found at i:99587197 original size:11 final size:11
Alignment explanation
Indices: 99587181--99587212 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
99587171 TCATATTTAA
99587181 TTTTTATATAT
1 TTTTTATATAT
*
99587192 TTTTTATAAAT
1 TTTTTATATAT
99587203 TTTTTATATA
1 TTTTTATATA
99587213 ATTGCTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTTATATAT
Found at i:99588731 original size:46 final size:43
Alignment explanation
Indices: 99588604--99588736 Score: 155
Period size: 46 Copynumber: 3.0 Consensus size: 43
99588594 CATGACAAAA
*
99588604 TGTGAAATGTAGGTATGGTATTTCAG---AAACTATACTGAGT
1 TGTGAAATGTAGGTATGGTATTTCAGAAAAAACCATACTGAGT
* * *
99588644 TATGAAATATAGGTATGGTATTTCAGAGAAGAAACCGATACTAAGT
1 TGTGAAATGTAGGTATGGTATTTCAGA-AA-AAACC-ATACTGAGT
99588690 TGTGAAATGTAGGTATGGTATTTCAGTAAAAAAAACCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTTCAG---AAAAAACCATACTGAGT
99588736 T
1 T
99588737 ATAGCATTGT
Statistics
Matches: 77, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
40 24 0.31
45 4 0.05
46 41 0.53
47 5 0.06
48 2 0.03
49 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTGAAATGTAGGTATGGTATTTCAGAAAAAACCATACTGAGT
Found at i:99607565 original size:26 final size:26
Alignment explanation
Indices: 99607536--99607588 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
99607526 TCAAACATGC
99607536 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
99607562 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
99607588 A
1 A
99607589 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:99615967 original size:20 final size:19
Alignment explanation
Indices: 99615930--99615968 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
99615920 TTATTTTGAT
*
99615930 TATTTTAATTTATTATCGA
1 TATTTTAATTTATAATCGA
99615949 TATTTTAATTTTATAATCGA
1 TATTTTAA-TTTATAATCGA
99615969 ATGATCGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (19 bp):
TATTTTAATTTATAATCGA
Found at i:99618073 original size:28 final size:27
Alignment explanation
Indices: 99617976--99618074 Score: 162
Period size: 28 Copynumber: 3.6 Consensus size: 27
99617966 TAGTAAGTCC
*
99617976 GCACACTTAGTGTTATATAATCAAACT
1 GCACACTTAGTGCTATATAATCAAACT
*
99618003 GCACACTTAGTGCTTACATAATCAAACT
1 GCACACTTAGTGC-TATATAATCAAACT
99618031 GCACACTTAGTGCTATATAATCAAACTT
1 GCACACTTAGTGCTATATAATCAAAC-T
99618059 GCACACTTAGTGCTAT
1 GCACACTTAGTGCTAT
99618075 GCAATTTAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 24 0.36
28 43 0.64
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (27 bp):
GCACACTTAGTGCTATATAATCAAACT
Found at i:99618095 original size:29 final size:28
Alignment explanation
Indices: 99617974--99618100 Score: 125
Period size: 28 Copynumber: 4.5 Consensus size: 28
99617964 TATAGTAAGT
* *
99617974 CCGCACACTTAGTGTTATATAATCAAA-
1 CCGCACACTTAGTGCTATACAATCAAAC
*
99618001 CTGCACACTTAGTGCT-TACATAATCAAA-
1 CCGCACACTTAGTGCTATAC--AATCAAAC
* *
99618029 CTGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
** * *
99618057 TTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATACAA-TCAAAC
99618086 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
99618101 CAATCTCATG
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
26 2 0.02
27 21 0.25
28 42 0.49
29 20 0.24
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:99625452 original size:28 final size:28
Alignment explanation
Indices: 99625420--99625547 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
99625410 ATAGTAAGTC
*
99625420 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
99625448 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
99625477 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
99625505 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
99625534 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99625548 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:99625510 original size:57 final size:57
Alignment explanation
Indices: 99625419--99625547 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
99625409 TATAGTAAGT
*
99625419 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
99625476 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
99625533 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
99625548 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:99629995 original size:23 final size:23
Alignment explanation
Indices: 99629961--99630014 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
99629951 GCAGAGATTC
*
99629961 TTTTAA-GATAAGCTTGTTATGA
1 TTTTAACGATAAGCTTGTCATGA
99629983 TTTTAACGATAAGCTTGTCATGA
1 TTTTAACGATAAGCTTGTCATGA
99630006 TTTTAACGA
1 TTTTAACGA
99630015 AATTAGAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 6 0.20
23 24 0.80
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (23 bp):
TTTTAACGATAAGCTTGTCATGA
Found at i:99636867 original size:133 final size:132
Alignment explanation
Indices: 99636646--99636921 Score: 417
Period size: 133 Copynumber: 2.1 Consensus size: 132
99636636 GCAACTTCAG
* * * * *
99636646 GGAGATAAAATCTTCAATTTTTAGTCTACTTCCTTGCTACCTCAGGAAGATAAAATTCATTCTTC
1 GGAGATAAGATCTTCAATTCTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAAACTCATTCTTC
*
99636711 AACCTGCTCTCTTACTACGTCAGAGAGATAAGGCTTGGTAAGTAAAATCTGCTCCATTGCCGATA
66 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGT-AGTAAAATCTGCTCCATTGCCGATA
99636776 CAT
130 CAT
* * * *
99636779 GGAGATAAGATCTTCAATTCTCAGTCTGCTTCCTTGCTACTTCAGGAAAATAAGACTCATTCTTT
1 GGAGATAAGATCTTCAATTCTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAAACTCATTCTTC
* * *
99636844 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGTGGTGAAATCTGCTCCCTTGCCGATAC
66 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGTAGTAAAATCTGCTCCATTGCCGATAC
*
99636909 GT
131 AT
99636911 GGAGATAAGAT
1 GGAGATAAGAT
99636922 TCCATCTACG
Statistics
Matches: 129, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
132 35 0.27
133 94 0.73
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (132 bp):
GGAGATAAGATCTTCAATTCTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAAACTCATTCTTC
AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGTAGTAAAATCTGCTCCATTGCCGATAC
AT
Found at i:99636954 original size:133 final size:132
Alignment explanation
Indices: 99636646--99637010 Score: 348
Period size: 133 Copynumber: 2.7 Consensus size: 132
99636636 GCAACTTCAG
* * * * ** * * * *
99636646 GGAGATAAAATCTTCAATTTTTAGTCTACTTCCTTGCTACCTCAGGAAGATAAAATTCATTCTTC
1 GGAGATAAGA-CTTCAATTCTCAGTCTGCTTCCCCGCAACTTCAGGAAAATAAAACTCATTCTTC
*
99636711 AACCTGCTCTCTTACTACGTCAGAGAGATAAGGCTTGGTAAGTAAAATCTGCTCCATTGCCGATA
65 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGTAAGTAAAATCTGCTCCATTGCCGATA
99636776 CAT
130 CAT
** * * *
99636779 GGAGATAAGATCTTCAATTCTCAGTCTGCTTCCTTGCTACTTCAGGAAAATAAGACTCATTCTTT
1 GGAGATAAGA-CTTCAATTCTCAGTCTGCTTCCCCGCAACTTCAGGAAAATAAAACTCATTCTTC
* * *
99636844 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGT-GGTGAAATCTGCTCCCTTGCCGATA
65 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGTAAGTAAAATCTGCTCCATTGCCGATA
*
99636908 CGT
130 CAT
* * *
99636911 GGAGATAAGA-TTCCA-TCTACGAAGATCTGC-TCCGCCGCAACTTCAGGGAGATAAAATCTTCA
1 GGAGATAAGACTTCAATTCT-C--AG-TCTGCTTCC-CCGCAACTTCAGGAAAATAAAA-C-TC-
* *
99636973 ATTC-TCAATCTGCT-TCCTTGCTACCTCAG-GAAGATAAG
58 ATTCTTCAACCTGCTCT-CTTACTACCTCAGAG-AGATAAG
99637011 ACTCATTCTT
Statistics
Matches: 198, Mismatches: 24, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
129 3 0.02
130 5 0.03
132 39 0.20
133 115 0.58
134 3 0.02
135 29 0.15
136 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
GGAGATAAGACTTCAATTCTCAGTCTGCTTCCCCGCAACTTCAGGAAAATAAAACTCATTCTTCA
ACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGTAAGTAAAATCTGCTCCATTGCCGATAC
AT
Found at i:99636963 original size:178 final size:179
Alignment explanation
Indices: 99636779--99637181 Score: 596
Period size: 178 Copynumber: 2.3 Consensus size: 179
99636769 GCCGATACAT
* * *
99636779 GGAGATAAGATCTTCAATTCTCAGTCTGCTTCCTTGCTACTTCAGGAAAATAAGACTCATTCTTT
1 GGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAAATAAGACTCATTCTTC
* ** * * * *
99636844 AACCTGCTCTCTTACTACCTCAGAGAGATAAGGCTTGGTG-GTGAAATCTGCTCCCTTGCCGATA
66 AACCTGCTCTCTTACTACCTCAGAGAAATAAGG-TCAGTGACTAAAATCTGCTCCATCGCCGATA
*
99636908 CGTGGAGATAAGATT-CCATCTACGAAGATCTGCTCCGCCGCAA-CTTCAG
130 CATGGAGATAAGATTACCATCTACGAAGATCTGCTCCGCCGCAATC-TCAG
* *
99636957 GGAGATAAAATCTTCAATTCTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTC
1 GGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAAATAAGACTCATTCTTC
*
99637022 AACCTGCTCTCTTGCTACCTCAGAGAAATAAGGTCAGTGACTAAAATCTGCTCCATCGCCGATAC
66 AACCTGCTCTCTTACTACCTCAGAGAAATAAGGTCAGTGACTAAAATCTGCTCCATCGCCGATAC
* *
99637087 ATGGAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAATCTCAG
131 ATGGAGATAAGATT-ACCATCTACGAAGATCTGCTCCGCCGCAATCTCAG
* *
99637137 GGAGATAAAATCTTCAATTCTTAGTCCGCTTCCTTGCTACCTCAG
1 GGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAG
99637182 AGAGATGAGG
Statistics
Matches: 202, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
177 4 0.02
178 125 0.62
180 72 0.36
181 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (179 bp):
GGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAAATAAGACTCATTCTTC
AACCTGCTCTCTTACTACCTCAGAGAAATAAGGTCAGTGACTAAAATCTGCTCCATCGCCGATAC
ATGGAGATAAGATTACCATCTACGAAGATCTGCTCCGCCGCAATCTCAG
Found at i:99637002 original size:45 final size:43
Alignment explanation
Indices: 99636953--99637052 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 43
99636943 CGCCGCAACT
* *
99636953 TCAGGGAGATAAAATCTTCAATTC-TCAATCTGCT-TCCTTGCTACC
1 TCAGGAAGATAAAA-C-TC-ATTCTTCAACCTGCTCT-CTTGCTACC
*
99636998 TCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACC
1 TCAGGAAGATAAAACTCATTCTTCAACCTGCTCTCTTGCTACC
99637041 TCAGAGAA-ATAA
1 TCAG-GAAGATAA
99637053 GGTCAGTGAC
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
42 4 0.08
43 28 0.57
44 5 0.10
45 12 0.24
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (43 bp):
TCAGGAAGATAAAACTCATTCTTCAACCTGCTCTCTTGCTACC
Found at i:99637006 original size:311 final size:313
Alignment explanation
Indices: 99636574--99637295 Score: 908
Period size: 311 Copynumber: 2.3 Consensus size: 313
99636564 CTTAAGGCTT
* * **
99636574 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTTATCATCTACGAAGATCTGCTCTACTGCA
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT-CCATCTACGAAGATCTGCTCCGCTGCA
* * * *
99636639 ACTTCAGGGAGATAAAATCTTCAATTTTTAGTCTACTTCCTTGCTACCTCAGGAAGATAAAATTC
64 ACTTCAGGGAGATAAAATCTTCAATTCTCAATCTACTTCCTTGCTACCTCAGGAAGATAAAACTC
* * ** * *
99636704 ATTCTTCAACCTGCTCTCTTACTACGTCAGAGAGATAAGGCTTGGTAAGTAAAATCTGCTCCATT
129 ATTCTTCAACCTGCTCTCTTACTACCTCAGAGAAATAAGG-TCAGTAACTAAAATCTGCTCCATC
* *
99636769 GCCGATACATGGAGATAAGATCTTCA-ATTCT-C-AG-TCTGCTTCC-TTGCTA-CTTCAGGAAA
193 GCCGATACATGGAGATAAGA--TTCACA-TCTGCAAGATCTGC-TCCGCTGCAATC-TCAGGAAA
* * *
99636828 ATAAGA-C-TC-ATTCTTTA-ACCTGC-TCTCTTACTACCTCAGAGAGATAAGGCTTGGTGGTG
253 ATAAAATCTTCAATTC-TTAGACC-GCTTC-CTTACTACCTCAGAGAGATAAGGCTTGGTAGTA
* * *
99636887 AAATCTGCTCCCTTGCCGATACGTGGAGATAAGATTCCATCTACGAAGATCTGCTCCGCCGCAAC
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCCATCTACGAAGATCTGCTCCGCTGCAAC
* *
99636952 TTCAGGGAGATAAAATCTTCAATTCTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAT
66 TTCAGGGAGATAAAATCTTCAATTCTCAATCTACTTCCTTGCTACCTCAGGAAGATAAAACTCAT
* *
99637017 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAAATAAGGTCAGTGACTAAAATCTGCTCCATCGCC
131 TCTTCAACCTGCTCTCTTACTACCTCAGAGAAATAAGGTCAGTAACTAAAATCTGCTCCATCGCC
* *
99637082 GATACATGGAGATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAATCTCAGGGAGATAAAA
196 GATACATGGAGATAAGATTCA-CATCTGC-AAGATCTGCTCCGCTGCAATCTCAGGAAAATAAAA
* * *
99637147 TCTTCAATTCTTAGTCCGCTTCCTTGCTACCTCAGAGAGATGAGGCTTGGTAGTA
259 TCTTCAATTCTTAGACCGCTTCCTTACTACCTCAGAGAGATAAGGCTTGGTAGTA
* * *
99637202 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCATCATTTATGGAGATCTGCTCCGCTGCA
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTC--CATCTACGAAGATCTGCTCCGCTGCA
* *
99637267 ACTTCAGGGAGATAAGATCTTCCATTCTC
64 ACTTCAGGGAGATAAAATCTTCAATTCTC
99637296 TACCAATATT
Statistics
Matches: 355, Mismatches: 39, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
308 4 0.01
309 3 0.01
310 41 0.12
311 119 0.34
312 7 0.02
313 51 0.14
314 2 0.01
315 71 0.20
316 8 0.02
317 49 0.14
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (313 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCCATCTACGAAGATCTGCTCCGCTGCAAC
TTCAGGGAGATAAAATCTTCAATTCTCAATCTACTTCCTTGCTACCTCAGGAAGATAAAACTCAT
TCTTCAACCTGCTCTCTTACTACCTCAGAGAAATAAGGTCAGTAACTAAAATCTGCTCCATCGCC
GATACATGGAGATAAGATTCACATCTGCAAGATCTGCTCCGCTGCAATCTCAGGAAAATAAAATC
TTCAATTCTTAGACCGCTTCCTTACTACCTCAGAGAGATAAGGCTTGGTAGTA
Found at i:99637037 original size:43 final size:42
Alignment explanation
Indices: 99636973--99637053 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
99636963 AAAATCTTCA
*
99636973 ATTCTCAATCTGCTTCCTTGCTACCTCAG-GAAGATAAGACTC
1 ATTCTCAACCTGCTTCCTTGCTACCTCAGAGAA-ATAAGACTC
99637015 ATTCTTCAACCTGC-TCTCTTGCTACCTCAGAGAAATAAG
1 ATTC-TCAACCTGCTTC-CTTGCTACCTCAGAGAAATAAG
99637054 GTCAGTGACT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
42 6 0.17
43 26 0.74
44 3 0.09
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (42 bp):
ATTCTCAACCTGCTTCCTTGCTACCTCAGAGAAATAAGACTC
Found at i:99637207 original size:137 final size:137
Alignment explanation
Indices: 99637032--99637294 Score: 377
Period size: 137 Copynumber: 1.9 Consensus size: 137
99637022 AACCTGCTCT
99637032 CTTGCTACCTCAGAGAAATAAGGTCAGTGACTAAAATCTGCTCCATCGCCGATACATGGAGATAA
1 CTTGCTACCTCAGAGAAATAAGGTCAGTGACTAAAATCTGCTCCATCGCCGATACATGGAGATAA
*
99637097 GATTCACCATCTGCGAAGATCTGCTCCGCTGCAA-TCTCAGGGAGATAAAATCTTCAATTCTTAG
66 GATTCACCATCTACGAAGATCTGCTCCGCTGCAACT-TCAGGGAGATAAAATCTTCAATTCTTAG
99637161 TCCGCTTC
130 TCCGCTTC
* * ** * *
99637169 CTTGCTACCTCAGAGAGATGAGGCTTGGT-AGTAAAATCTGCTCCATTGCCGATACATGGAGATA
1 CTTGCTACCTCAGAGAAATAAGG-TCAGTGACTAAAATCTGCTCCATCGCCGATACATGGAGATA
* * * * * *
99637233 AGATTCATCATTTATGGAGATCTGCTCCGCTGCAACTTCAGGGAGATAAGATCTTCCATTCT
65 AGATTCACCATCTACGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTCT
99637295 CTACCAATAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
137 107 0.96
138 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (137 bp):
CTTGCTACCTCAGAGAAATAAGGTCAGTGACTAAAATCTGCTCCATCGCCGATACATGGAGATAA
GATTCACCATCTACGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTTCAATTCTTAGT
CCGCTTC
Found at i:99653038 original size:21 final size:20
Alignment explanation
Indices: 99653006--99653071 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
99652996 GATAGCTTTT
*
99653006 AAATTATTTTTAAATTTTAA
1 AAATTTTTTTTAAATTTTAA
99653026 AAATATTTTTTTAATAATTTTAA
1 AAAT-TTTTTTT-A-AATTTTAA
** *
99653049 TGATTTTTTTAAAATTTTAA
1 AAATTTTTTTTAAATTTTAA
99653069 AAA
1 AAA
99653072 ATTAAATACA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 13 0.35
21 7 0.19
22 7 0.19
23 10 0.27
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
AAATTTTTTTTAAATTTTAA
Found at i:99657885 original size:23 final size:22
Alignment explanation
Indices: 99657859--99657903 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
99657849 TTGGATTATG
* *
99657859 GAGTTAGGGAGTAATAGTTTAAA
1 GAGTGAGGGACTAA-AGTTTAAA
*
99657882 GAGTGAGTGACTAAAGTTTAAA
1 GAGTGAGGGACTAAAGTTTAAA
99657904 CTTGTAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.02, G:0.29, T:0.29
Consensus pattern (22 bp):
GAGTGAGGGACTAAAGTTTAAA
Found at i:99673126 original size:21 final size:22
Alignment explanation
Indices: 99673092--99673132 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
99673082 AACAATTATA
*
99673092 AATATAAAGAATTAATTTTTTT
1 AATATAAAGAATTAAATTTTTT
*
99673114 AATATTAA-AATTAAATTTT
1 AATATAAAGAATTAAATTTT
99673133 CACAATGCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
AATATAAAGAATTAAATTTTTT
Found at i:99677783 original size:4 final size:4
Alignment explanation
Indices: 99677774--99677800 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
99677764 TACAAGTTAA
99677774 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
99677801 AACCCAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:99680471 original size:18 final size:18
Alignment explanation
Indices: 99680448--99680511 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
99680438 CCTTCGTGAT
99680448 CTGAAGCCCGAAGTTTAA
1 CTGAAGCCCGAAGTTTAA
** *
99680466 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT--TTAA
* *
99680487 CGGAAGCCCGAAGTTTAG
1 CTGAAGCCCGAAGTTTAA
99680505 CTGAAGC
1 CTGAAGC
99680512 ACATAAGTGC
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
18 15 0.44
19 5 0.15
20 5 0.15
21 9 0.26
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (18 bp):
CTGAAGCCCGAAGTTTAA
Found at i:99680509 original size:39 final size:39
Alignment explanation
Indices: 99680450--99680744 Score: 423
Period size: 39 Copynumber: 7.6 Consensus size: 39
99680440 TTCGTGATCT
* * *
99680450 GAAGCCCGAAGTTTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGCTAAACG
* *
99680489 GAAGCCCGAA-GTTTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGTTGA-CTGAAGCACAGAAGTGCTAAACG
* * * *
99680528 GAAGCCCGGAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGCTAAACG
* *
99680567 GAAGCCCAAAGGTTGACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGCTAAACG
99680606 GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGC-AAACG
1 GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGCTAAACG
* *
99680644 GAAGCCCGAAGGCTGATTGAAGCACAGAAGTGCTAAACG
1 GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGCTAAACG
*
99680683 GAAGCCCGAAGGCTGACTGAAGCACAGAAGTGCTAAACG
1 GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGCTAAACG
* *
99680722 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGTTGACTGAAGC
99680745 TCACCAGAGC
Statistics
Matches: 237, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
38 39 0.16
39 195 0.82
40 3 0.01
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGTTGACTGAAGCACAGAAGTGCTAAACG
Found at i:99680700 original size:116 final size:117
Alignment explanation
Indices: 99680450--99680744 Score: 448
Period size: 116 Copynumber: 2.5 Consensus size: 117
99680440 TTCGTGATCT
* * * * *
99680450 GAAGCCCGAAGTTTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGTTTAGCTGAAGCACA
1 GAAGCCCGAAGGTTGACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGTTAACTGAAGCACA
* *
99680515 TAAGTGCTAAACGGAAGCCCGGAGGCTAACTGAAGCACACAAGTGCTAAACG
66 GAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
99680567 GAAGCCCAAAGGTTGACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGTTGACTGAAGCACA
1 GAAGCCCGAAGGTTGACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGTTAACTGAAGCACA
* * *
99680632 GAAGTGC-AAACGGAAGCCCGAAGGCTGATTGAAGCACAGAAGTGCTAAACG
66 GAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * *
99680683 GAAGCCCGAAGGCTGACTGAAGCACAGAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGTTGACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGTTAACTGAAGC
99680745 TCACCAGAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
116 97 0.60
117 64 0.40
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.13
Consensus pattern (117 bp):
GAAGCCCGAAGGTTGACTGAAGCACACAAGTGCTAAACGGAAGCCCGAAGGTTAACTGAAGCACA
GAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:99684445 original size:23 final size:22
Alignment explanation
Indices: 99684394--99684445 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
99684384 CCTCGTCTTT
*
99684394 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
99684416 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
99684439 TTCTTTT
1 TTCTTTT
99684446 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:99686823 original size:8 final size:8
Alignment explanation
Indices: 99686812--99686836 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
99686802 TAAACTAAGT
99686812 AAATAAAA
1 AAATAAAA
99686820 AAATAAAA
1 AAATAAAA
99686828 AAATAAAA
1 AAATAAAA
99686836 A
1 A
99686837 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:99688196 original size:3 final size:3
Alignment explanation
Indices: 99688188--99688317 Score: 81
Period size: 3 Copynumber: 43.7 Consensus size: 3
99688178 TATAAAAGAC
* * * *
99688188 AAT AAT AAT AAT AAT -AT AAT ACCT -AT GAT ACT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * *
99688232 AAT AAT AGT AAT AAT AAG AA- AATT AAT ATT AGT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
* * *
99688277 GGAA- AAT AAT AAT AAA AAT GAT AAT -AT AGT AAT AAT AAT AA
1 --AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
99688318 AAGTGAAATT
Statistics
Matches: 98, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
2 9 0.09
3 84 0.86
4 3 0.03
5 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:99688342 original size:43 final size:43
Alignment explanation
Indices: 99688255--99688345 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
99688245 ATAAGAAAAT
* *
99688255 TAATATTAGTATTAATAATAATGGAAAATAATAATAAAAATGA
1 TAATATTAGTAATAATAATAAAGGAAAATAATAATAAAAATGA
* * *
99688298 TAATA-TAGTAATAATAATAAAAGTGAAATTAATAGT-AAATTGA
1 TAATATTAGTAATAATAAT-AAAG-GAAAATAATAATAAAAATGA
99688341 TAATA
1 TAATA
99688346 ATAATGTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
42 12 0.29
43 19 0.46
44 10 0.24
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (43 bp):
TAATATTAGTAATAATAATAAAGGAAAATAATAATAAAAATGA
Found at i:99688419 original size:22 final size:23
Alignment explanation
Indices: 99688391--99688436 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
99688381 GATAGGAAAT
*
99688391 AATAATATGGTAA-AAAAATAAC
1 AATAATATGATAATAAAAATAAC
99688413 AATAATATGATAATAAAAATAAC
1 AATAATATGATAATAAAAATAAC
99688436 A
1 A
99688437 GTGGTGGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.24
Consensus pattern (23 bp):
AATAATATGATAATAAAAATAAC
Found at i:99688921 original size:21 final size:20
Alignment explanation
Indices: 99688897--99688945 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
99688887 ATATATACAT
99688897 ATATATATTAAAGACATATAC
1 ATATATATTAAA-ACATATAC
**
99688918 ATATATAACAAAACATATAC
1 ATATATATTAAAACATATAC
99688938 -TA-ATATTA
1 ATATATATTA
99688946 GTAACAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 4 0.17
19 2 0.08
20 8 0.33
21 10 0.42
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (20 bp):
ATATATATTAAAACATATAC
Found at i:99689008 original size:22 final size:22
Alignment explanation
Indices: 99688983--99689027 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
99688973 GATATAATGA
*
99688983 TAATAGGTATATAACATGGTAT
1 TAATAGGTATATAACATAGTAT
* * *
99689005 TAATATGTGTATAATATAGTAT
1 TAATAGGTATATAACATAGTAT
99689027 T
1 T
99689028 TAAATGTGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (22 bp):
TAATAGGTATATAACATAGTAT
Found at i:99690872 original size:14 final size:14
Alignment explanation
Indices: 99690821--99690872 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
99690811 TTTAAATATA
99690821 TAATATTATATATTT
1 TAATATT-TATATTT
* * *
99690836 AAATTTTTATTTTT
1 TAATATTTATATTT
* *
99690850 TATTTTTTATATTT
1 TAATATTTATATTT
99690864 TAATATTTA
1 TAATATTTA
99690873 AAATATATTT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 24 0.83
15 5 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TAATATTTATATTT
Found at i:99690891 original size:20 final size:20
Alignment explanation
Indices: 99690857--99690906 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
99690847 TTTTATTTTT
99690857 TATATTTTA-ATATTTAAAA
1 TATATTTTATATATTTAAAA
* *
99690876 TATATTTTATATATTTGAAT
1 TATATTTTATATATTTAAAA
*
99690896 TAAATTTTATA
1 TATATTTTATA
99690907 AATAATTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TATATTTTATATATTTAAAA
Found at i:99691822 original size:30 final size:30
Alignment explanation
Indices: 99691786--99691849 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
99691776 TCATCCCCGA
* *
99691786 AATTC-AATCATTTT-ATTGTAATAATATTTT
1 AATTCAAATAATTTTCATT-TAATAA-ATTAT
99691816 AATTCAAATAATTTTCATTTAATAAATTAT
1 AATTCAAATAATTTTCATTTAATAAATTAT
99691846 AATT
1 AATT
99691850 AATAGGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 13 0.43
31 14 0.47
32 3 0.10
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (30 bp):
AATTCAAATAATTTTCATTTAATAAATTAT
Found at i:99699783 original size:25 final size:24
Alignment explanation
Indices: 99699751--99699833 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 24
99699741 ATTTCAATAT
99699751 TTGTTGTAGGCTTCGTGTTTATTGA
1 TTGTTGTAGGCTTC-TGTTTATTGA
* * *
99699776 TTGTTGTA-GATTCTTTTTCAATTTA
1 TTGTTGTAGGCTTCTGTTT--ATTGA
99699801 -TGTTGTAGGCTTCATGTTTATTGA
1 TTGTTGTAGGCTTC-TGTTTATTGA
*
99699825 GTTCTTGTA
1 -TTGTTGTA
99699834 TTGTTGATTA
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
23 4 0.09
24 15 0.33
25 16 0.36
26 10 0.22
ACGTcount: A:0.16, C:0.08, G:0.22, T:0.54
Consensus pattern (24 bp):
TTGTTGTAGGCTTCTGTTTATTGA
Found at i:99700010 original size:160 final size:160
Alignment explanation
Indices: 99699829--99700158 Score: 552
Period size: 160 Copynumber: 2.1 Consensus size: 160
99699819 TATTGAGTTC
*
99699829 TTGTATTGTTGATTATTGTAGATTCTCTTGTTTGTTTTTTTAGAAAGGTTATCTCGATTGTTATG
1 TTGTATTGTTGATTATTGTAGATTCTCTAGTTTGTTTTTTTAGAAAGGTTATCTCGATTGTTATG
* * * *
99699894 AATCATTGTTTAATTAATTAATGAAAGTATATAAAGAGATAGGTAGAAAAAGAAGACCTTGTACA
66 AATCATTGTTTAATTAATAAATAAAAATATATAAAGAGATAGGTAGAAAAAAAAGACCTTGTACA
* *
99699959 ATGGCCACCATCGCCCTCTCTTCATCTGTG
131 ATGACCACCATCGCCCTCTCTTCATCTGAG
*
99699989 TTGTATTGTTGATTATTGTAGATTCTCTAGTTTGTTTTTTTAGAAAGGTTATCTTGATTGTTATG
1 TTGTATTGTTGATTATTGTAGATTCTCTAGTTTGTTTTTTTAGAAAGGTTATCTCGATTGTTATG
*
99700054 AATCATTGTTTAATTAATAAATAAAAATATATAAAGGGATAGGTAGAAAAAAAAGACCTTGTACA
66 AATCATTGTTTAATTAATAAATAAAAATATATAAAGAGATAGGTAGAAAAAAAAGACCTTGTACA
* * *
99700119 ATGACCATCATCGCCCTCTTTTCTTCTGAG
131 ATGACCACCATCGCCCTCTCTTCATCTGAG
99700149 TTGTATTGTT
1 TTGTATTGTT
99700159 TGTAAGTTTC
Statistics
Matches: 158, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
160 158 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (160 bp):
TTGTATTGTTGATTATTGTAGATTCTCTAGTTTGTTTTTTTAGAAAGGTTATCTCGATTGTTATG
AATCATTGTTTAATTAATAAATAAAAATATATAAAGAGATAGGTAGAAAAAAAAGACCTTGTACA
ATGACCACCATCGCCCTCTCTTCATCTGAG
Found at i:99702165 original size:7 final size:7
Alignment explanation
Indices: 99702137--99702189 Score: 54
Period size: 8 Copynumber: 7.3 Consensus size: 7
99702127 AACAGTTCTT
99702137 TTATATA
1 TTATATA
*
99702144 -TATTTA
1 TTATATA
99702150 TTATTATA
1 TTA-TATA
*
99702158 TTAGATA
1 TTATATA
99702165 TGTATATA
1 T-TATATA
99702173 TTATATA
1 TTATATA
99702180 TATATATA
1 T-TATATA
99702188 TT
1 TT
99702190 TTTATATACA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 5 0.13
7 14 0.37
8 19 0.50
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (7 bp):
TTATATA
Found at i:99702174 original size:15 final size:15
Alignment explanation
Indices: 99702138--99702189 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
99702128 ACAGTTCTTT
*
99702138 TATATATATT-TAT-
1 TATATATATTAGATA
99702151 TAT-TATATTAGATA
1 TATATATATTAGATA
* *
99702165 TGTATATATTATATA
1 TATATATATTAGATA
99702180 TATATATATT
1 TATATATATT
99702190 TTTATATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 6 0.19
13 5 0.16
14 2 0.06
15 19 0.59
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (15 bp):
TATATATATTAGATA
Found at i:99702328 original size:17 final size:16
Alignment explanation
Indices: 99702287--99702330 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
99702277 TACTACGTTC
*
99702287 TATATATATTTTTATAT
1 TATATATA-TTTTAAAT
*
99702304 TATGTATATTTTAAAT
1 TATATATATTTTAAAT
99702320 TATTATATATT
1 TA-TATATATT
99702331 AAGTATTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TATATATATTTTAAAT
Found at i:99704629 original size:54 final size:56
Alignment explanation
Indices: 99704533--99704651 Score: 206
Period size: 54 Copynumber: 2.1 Consensus size: 56
99704523 GGAAGGTGTT
*
99704533 AACTAGAGATTGGTTGCCAAAAAATGGGTTTCTAATGGAAGAGTCAATTATACAAAC
1 AACT-GAGATCGGTTGCCAAAAAATGGGTTTCTAATGGAAGAGTCAATTATACAAAC
99704590 AACTGAGATCGGTTGCC-AAAAAT-GGTTTCTAATGGAAGAGTCAATTATACAAAC
1 AACTGAGATCGGTTGCCAAAAAATGGGTTTCTAATGGAAGAGTCAATTATACAAAC
99704644 AACTGAGA
1 AACTGAGA
99704652 AGAATGTTGT
Statistics
Matches: 61, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
54 39 0.64
55 6 0.10
56 12 0.20
57 4 0.07
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (56 bp):
AACTGAGATCGGTTGCCAAAAAATGGGTTTCTAATGGAAGAGTCAATTATACAAAC
Found at i:99715033 original size:87 final size:86
Alignment explanation
Indices: 99714911--99715341 Score: 427
Period size: 87 Copynumber: 4.9 Consensus size: 86
99714901 TTATTTTTGC
* * *
99714911 TTTCGAAAATCAACTCATATTGCGAGAGGTAAGTTGAACCTTGGCTCGCATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTGG---GCACGCCGAGGTATTTTC
* *
99714976 AAATTCTGTTTCTCAATTT-TA-T
63 AAATTCTATTTTTCAATTTATATT
* * * *
99714998 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTATCTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT-TGGGCACGCCGAGGTATTTTCAA
* * *
99715063 ATTTTGTTTTTTAATTTATATTTT
65 ATTCTATTTTTCAATTTATA--TT
* * *
99715087 TTTAAAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTT
1 TTTCAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAACCTTGGG-CAC--GCCGAGGTATTTT
** *
99715152 CAAATTCTATTTTT-AATTCCTACT
62 CAAATTCTATTTTTCAATTTATATT
* * * *
99715176 TTTCTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTT-GGGCACGCCGAGGTATTTTCAA
* * *
99715241 TTTCTATTTTTCAATTTCTACT
65 ATTCTATTTTTCAATTTATATT
* * * * * * *
99715263 TTTCAAAACTCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT-TGGGCACGCCGAGGTATTTTCAA
* *
99715328 TTTCTATGTTTCAA
65 ATTCTATTTTTCAA
99715342 AAATCAACTC
Statistics
Matches: 298, Mismatches: 34, Indels: 24
0.84 0.10 0.07
Matches are distributed among these distances:
85 31 0.10
86 26 0.09
87 119 0.40
88 38 0.13
89 21 0.07
90 34 0.11
91 6 0.02
92 23 0.08
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTGGGCACGCCGAGGTATTTTCAAA
TTCTATTTTTCAATTTATATT
Found at i:99715254 original size:14 final size:14
Alignment explanation
Indices: 99715235--99715268 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
99715225 GCTGAGGTAA
*
99715235 TTTCAATTTCTATT
1 TTTCAATTTCTACT
99715249 TTTCAATTTCTACT
1 TTTCAATTTCTACT
99715263 TTTCAA
1 TTTCAA
99715269 AACTCAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:99715368 original size:73 final size:72
Alignment explanation
Indices: 99715249--99715449 Score: 285
Period size: 73 Copynumber: 2.8 Consensus size: 72
99715239 AATTTCTATT
* *
99715249 TTTCAATTTCTACTTTTCAAAACTCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTA-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
99715314 TGAGGTAA
65 TGAGGTAA
* * ** *
99715322 TTTCAATTTCTATGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGGGCCTTGGGGCACGC
1 TTTCAATTTCTAT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
*
99715387 TGAGGTAT
65 TGAGGTAA
** *
99715395 TTTCAAACTCTATTTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTC
1 TTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
99715450 GGGTCACATG
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
72 39 0.35
73 74 0.65
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (72 bp):
TTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAA
Found at i:99715589 original size:14 final size:14
Alignment explanation
Indices: 99715570--99715604 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
99715560 CGCTGAGGTA
*
99715570 TTTTCAATTTCTGT
1 TTTTCAATTTCTGC
*
99715584 TTTTCAGTTTCTGC
1 TTTTCAATTTCTGC
99715598 TTTTCAA
1 TTTTCAA
99715605 AAAAAAAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.14, C:0.17, G:0.09, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:99715730 original size:87 final size:88
Alignment explanation
Indices: 99715515--99715901 Score: 381
Period size: 87 Copynumber: 4.4 Consensus size: 88
99715505 CTACTTTTCC
* *
99715515 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--CGCACGCTGAGGTATTTTC-ATT
* * *
99715579 TCTGTTTTTCAGTTTCTGCTTTTCAAAAA
63 TCTGTTTTTCAATTTATGATTTTC---AA
*
99715608 AAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCACGCTGAGGTATTTTTAGTTT
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCGCACGCTGAGGTATTTTCA-TTT
*
99715672 CAGTTTTTCAATTTAT-ATTTGTC-A
64 CTGTTTTTCAATTTATGATTT-TCAA
* *
99715696 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCACGCTGAGGAATTTTCATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCGCACGCTGAGGTATTTTCATTTCT
** * * *
99715760 GCCTTTCAATCTCTGCTTTTCAAA
66 GTTTTTCAATTTATGATTTTC-AA
* *
99715784 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACATGCTGAGGTA---T--TTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCGCAC--GCTGAGGTATTTTCATTT
*
99715843 CGGTTTTT--ATTTAT-ACTTTTC-A
64 CTGTTTTTCAATTTATGA-TTTTCAA
* *
99715865 AAAATCAACTCATATGGTGAGAGGTGAGTTGAGCCTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
99715902 GGGTCACATG
Statistics
Matches: 254, Mismatches: 28, Indels: 35
0.80 0.09 0.11
Matches are distributed among these distances:
81 35 0.14
83 9 0.04
85 7 0.03
86 15 0.06
87 59 0.23
88 45 0.18
90 8 0.03
91 4 0.02
92 34 0.13
93 4 0.02
94 32 0.13
95 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.35
Consensus pattern (88 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCGCACGCTGAGGTATTTTCATTTCT
GTTTTTCAATTTATGATTTTCAA
Found at i:99715941 original size:14 final size:14
Alignment explanation
Indices: 99715922--99715948 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
99715912 CCGAGATATT
99715922 TTCAAATTCTGTTG
1 TTCAAATTCTGTTG
99715936 TTCAAATTCTGTT
1 TTCAAATTCTGTT
99715949 TTTAATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTG
Found at i:99716034 original size:102 final size:101
Alignment explanation
Indices: 99715845--99716034 Score: 263
Period size: 102 Copynumber: 1.9 Consensus size: 101
99715835 GGTATTTTCG
* * *
99715845 GTTTTTATTTATACTTTTCAAAAATCAACTCATATGGTGAGAGGTGAGTTGAGCCTCGGGTCACA
1 GTTTTTATTTATACTTTTCAAAAATCAACTCATATGGCGAAAGGTGAGTTGAGCCTCGGCTCACA
*
99715910 TGCCGAGATATTTTCAAATTCTGTTGTTCAAATTCT
66 CGCCGAGATATTTTCAAATTCTGTTGTTCAAATTCT
* * * * *
99715946 GTTTTTAATTTCTACTTTTCCAAAATCAACTGATATTGCGAAAGGTGAGTTGAGCCTTGGCTCAC
1 GTTTTT-ATTTATACTTTTCAAAAATCAACTCATATGGCGAAAGGTGAGTTGAGCCTCGGCTCAC
* * *
99716011 ACGCTGAGGTATTTTCAATTTCTG
65 ACGCCGAGATATTTTCAAATTCTG
99716035 CTTTTCCAAA
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
101 6 0.08
102 70 0.92
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (101 bp):
GTTTTTATTTATACTTTTCAAAAATCAACTCATATGGCGAAAGGTGAGTTGAGCCTCGGCTCACA
CGCCGAGATATTTTCAAATTCTGTTGTTCAAATTCT
Found at i:99716468 original size:44 final size:44
Alignment explanation
Indices: 99716420--99716511 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
99716410 AGTTATAGTT
*
99716420 GAGCAGGCCAAAGTTACAAGTCTTGTCTCCCTGAAGTTGCAGCG
1 GAGCAGGCCAAAGTTACAAGTCTTGTCCCCCTGAAGTTGCAGCG
* * * *
99716464 GAGCAGGTCAAAGTTGCAAGTTTTGTCCCCCTGAAGTTGCAGTG
1 GAGCAGGCCAAAGTTACAAGTCTTGTCCCCCTGAAGTTGCAGCG
99716508 GAGC
1 GAGC
99716512 TGATCGAGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (44 bp):
GAGCAGGCCAAAGTTACAAGTCTTGTCCCCCTGAAGTTGCAGCG
Found at i:99718063 original size:3 final size:3
Alignment explanation
Indices: 99718055--99718083 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
99718045 ACTTTAATTT
99718055 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
99718084 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:99718203 original size:12 final size:14
Alignment explanation
Indices: 99718182--99718280 Score: 58
Period size: 12 Copynumber: 7.5 Consensus size: 14
99718172 CAAATGTGTC
99718182 TATA-TTATGTAT-
1 TATATTTATGTATA
99718194 TAT-TTTATGTATA
1 TATATTTATGTATA
99718207 TATATTTATACGTTATA
1 TATATTTAT--G-TATA
*
99718224 TATACTTT-T-AATA
1 TATA-TTTATGTATA
*
99718237 CTATATTT-TATATA
1 -TATATTTATGTATA
99718251 T-TA-TTATGTATA
1 TATATTTATGTATA
99718263 T-T-TTTA-GTATA
1 TATATTTATGTATA
99718274 TATATTT
1 TATATTT
99718281 GTGAAGCATT
Statistics
Matches: 71, Mismatches: 3, Indels: 25
0.72 0.03 0.25
Matches are distributed among these distances:
11 8 0.11
12 24 0.34
13 14 0.20
14 12 0.17
16 1 0.01
17 9 0.13
18 3 0.04
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (14 bp):
TATATTTATGTATA
Found at i:99718333 original size:7 final size:7
Alignment explanation
Indices: 99718305--99718356 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
99718295 ATAGTTCTTT
99718305 TTATATA
1 TTATATA
*
99718312 -TATTTA
1 TTATATA
99718318 TTATTATA
1 TTA-TATA
*
99718326 TTAGATA
1 TTATATA
99718333 TGTATATA
1 T-TATATA
99718341 TTATATA
1 TTATATA
99718348 TTATATA
1 TTATATA
99718355 TT
1 TT
99718357 TTTTATATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
6 5 0.13
7 21 0.55
8 12 0.32
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (7 bp):
TTATATA
Found at i:99718493 original size:21 final size:19
Alignment explanation
Indices: 99718457--99718500 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
99718447 CTACGTTCTA
*
99718457 TATATATTTTTATATTATG
1 TATATATTTTAATATTATG
99718476 TATATATTTTAA-ATTAT-
1 TATATATTTTAATATTATG
99718493 TATATATT
1 TATATATT
99718501 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 5 0.21
19 11 0.46
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATTTTAATATTATG
Found at i:99718496 original size:17 final size:18
Alignment explanation
Indices: 99718457--99718500 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
99718447 CTACGTTCTA
*
99718457 TATATATTTTTATATTATG
1 TATATA-TTTTAAATTATG
99718476 TATATATTTTAAATTAT-
1 TATATATTTTAAATTATG
99718493 TATATATT
1 TATATATT
99718501 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 10 0.42
19 6 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TATATATTTTAAATTATG
Done.