Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109233746
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2708888 characters in sequence are not A, C, G, or T
File 301 of 332
Found at i:99729168 original size:12 final size:12
Alignment explanation
Indices: 99729147--99729177 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
99729137 ATTAGAAGTT
*
99729147 GATTTTGATTTC
1 GATTTAGATTTC
99729159 GATTTAGATTTC
1 GATTTAGATTTC
99729171 GATTTAG
1 GATTTAG
99729178 GGTTATTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (12 bp):
GATTTAGATTTC
Found at i:99729384 original size:64 final size:64
Alignment explanation
Indices: 99729314--99729447 Score: 232
Period size: 64 Copynumber: 2.1 Consensus size: 64
99729304 GATTTTGATG
* * *
99729314 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTGTATCTGCCAT
1 TGTTTGTATCTGCCATTATATGAATGCCATTACCAAACTGATCTTTATTGTGTATATCTGCCAT
*
99729378 TGTTTGTATCTGTCATTATATGAATGCCATTACCAAACTGATCTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTATATGAATGCCATTACCAAACTGATCTTTATTGTGTATATCTGCCAT
99729442 TGTTTG
1 TGTTTG
99729448 AATGTCATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.45
Consensus pattern (64 bp):
TGTTTGTATCTGCCATTATATGAATGCCATTACCAAACTGATCTTTATTGTGTATATCTGCCAT
Found at i:99729385 original size:16 final size:16
Alignment explanation
Indices: 99729360--99729394 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
99729350 ACTGATCTTT
99729360 ATTGTGTGTATCTGCC
1 ATTGTGTGTATCTGCC
* *
99729376 ATTGTTTGTATCTGTC
1 ATTGTGTGTATCTGCC
99729392 ATT
1 ATT
99729395 ATATGAATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.14, G:0.20, T:0.51
Consensus pattern (16 bp):
ATTGTGTGTATCTGCC
Found at i:99729491 original size:48 final size:48
Alignment explanation
Indices: 99729384--99729495 Score: 161
Period size: 48 Copynumber: 2.3 Consensus size: 48
99729374 CCATTGTTTG
* * *
99729384 TATCTGTCATTATATGAATGCCATTACCAAACTGATCTTTATTGTGTA
1 TATCTGCCATTGTTTGAATGCCATTACCAAACTGATCTTTATTGTGTA
* * * *
99729432 TATCTGCCATTGTTTGAATGTCATTATCAAATTGATGTTTATTGTGTA
1 TATCTGCCATTGTTTGAATGCCATTACCAAACTGATCTTTATTGTGTA
99729480 TATCTGCCATTGTTTG
1 TATCTGCCATTGTTTG
99729496 TATCTGCCAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (48 bp):
TATCTGCCATTGTTTGAATGCCATTACCAAACTGATCTTTATTGTGTA
Found at i:99729535 original size:62 final size:62
Alignment explanation
Indices: 99729453--99729685 Score: 430
Period size: 62 Copynumber: 3.8 Consensus size: 62
99729443 GTTTGAATGT
* *
99729453 CATTATCAAATTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
1 CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
99729515 CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
1 CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
*
99729577 CATTATTAAACTGATGTTTATTGTGTATATCTGTCATTGTTTGTATCTGCCATTAAATTATA
1 CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
*
99729639 CATTATTAAACTGATGTTTATTGTGTATATCTGTCATTGTTTGTATC
1 CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATC
99729686 CAGGCTCCTA
Statistics
Matches: 168, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 168 1.00
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.48
Consensus pattern (62 bp):
CATTATTAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGTATCTGCCATTAAATTATA
Found at i:99729569 original size:112 final size:110
Alignment explanation
Indices: 99729320--99729681 Score: 445
Period size: 124 Copynumber: 3.1 Consensus size: 110
99729310 GATGTGTTTG
* * *
99729320 TATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTGTATCTGCCATTGTTTGT
1 TATCTGCCATTGTTTGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGT
* * * * ** *
99729385 ATCTGTCATTATATGAATGCCATTACCAAACTGATCTTTATTGTGTA
66 ATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTA
* *
99729432 TATCTGCCATTGTTTGAATGTCATTATCAAATTGATGTTTATTGTGTATATCTGCCATTGTTTGT
1 TATCTGCCATTGTTTGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGT
99729497 ATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTA
66 ATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTA
*
99729542 TATCTGCCATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTATAT
1 TATCTGCCATTGTTTG-A-ATGCC-----ATTAT-C------AAACTGATGTTTATTGTGTATAT
*
99729607 CTGTCATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTA
52 CTGCCATTGTTTGTATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTA
*
99729666 TATCTGTCATTGTTTG
1 TATCTGCCATTGTTTG
99729682 TATCCAGGCT
Statistics
Matches: 219, Mismatches: 17, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
110 40 0.18
111 3 0.01
112 75 0.34
117 5 0.02
118 1 0.00
124 95 0.43
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (110 bp):
TATCTGCCATTGTTTGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGCCATTGTTTGT
ATCTGCCATTAAATTATACATTATTAAACTGATGTTTATTGTGTA
Found at i:99729995 original size:15 final size:15
Alignment explanation
Indices: 99729971--99730014 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
99729961 GAAGAAAACA
99729971 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
* *
99729986 TGTTTGGTAGTGAAG
1 TGTCTGGTAGTGATG
*
99730001 TGTCTGGTATTGAT
1 TGTCTGGTAGTGAT
99730015 AGTGATGCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.16, C:0.05, G:0.36, T:0.43
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:99731573 original size:43 final size:43
Alignment explanation
Indices: 99731488--99731656 Score: 229
Period size: 43 Copynumber: 4.0 Consensus size: 43
99731478 TGTTGCTGAT
* *
99731488 ATTGTTGGAAAGTTATTGACT-TTTTTTAATATGTATGCAATG
1 ATTGTTGGAAAGTTGTTGACTATTTTTTAATATGCATGCAATG
* * *
99731530 ATTATTGGAGAGTTGTTGACTATTTTTTAATATGCATGTAATG
1 ATTGTTGGAAAGTTGTTGACTATTTTTTAATATGCATGCAATG
* *
99731573 ATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATACAATG
1 ATTGTTGGAAAGTTGTTGACTATTTTTTAATATGCATGCAATG
* *
99731616 ATTGTTGG-TA--TGTTGCCTATTTTTTAATATGCATGCAATG
1 ATTGTTGGAAAGTTGTTGACTATTTTTTAATATGCATGCAATG
99731656 A
1 A
99731657 GTTTTTTTAT
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 29 0.26
42 19 0.17
43 65 0.58
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (43 bp):
ATTGTTGGAAAGTTGTTGACTATTTTTTAATATGCATGCAATG
Found at i:99731649 original size:83 final size:84
Alignment explanation
Indices: 99731488--99731656 Score: 234
Period size: 83 Copynumber: 2.0 Consensus size: 84
99731478 TGTTGCTGAT
* * *
99731488 ATTGTTGGAAAGTTATTGACTTTTTTTAATATGTATGCAATGATTATTGGAGAGTTGTTGACTAT
1 ATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATACAATGATTATTGGAGAG-TGTTGACTAT
*
99731553 TTTTTAATATGCATGTAATG
65 TTTTTAATATGCATGCAATG
* * * *
99731573 ATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATACAATGATTGTTGG-TA-TGTTGCCTAT
1 ATTGTTGGAAAGCTATTGACT-TTTTTTAATATGCATACAATGATTATTGGAGAGTGTTGACTAT
99731636 TTTTTAATATGCATGCAATG
65 TTTTTAATATGCATGCAATG
99731656 A
1 A
99731657 GTTTTTTTAT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
83 29 0.39
85 20 0.27
86 26 0.35
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (84 bp):
ATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATACAATGATTATTGGAGAGTGTTGACTATT
TTTTAATATGCATGCAATG
Found at i:99732366 original size:21 final size:20
Alignment explanation
Indices: 99732342--99732385 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
99732332 CCTAAGTTAG
99732342 CAAGAGGGTACCCCAACTCAA
1 CAAGA-GGTACCCCAACTCAA
*
99732363 C-A-AGGTACCCCAACTCAT
1 CAAGAGGTACCCCAACTCAA
99732381 CAAGA
1 CAAGA
99732386 AGCTGTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
18 15 0.75
19 2 0.10
20 2 0.10
21 1 0.05
ACGTcount: A:0.39, C:0.34, G:0.16, T:0.11
Consensus pattern (20 bp):
CAAGAGGTACCCCAACTCAA
Found at i:99732371 original size:18 final size:18
Alignment explanation
Indices: 99732348--99732384 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
99732338 TTAGCAAGAG
99732348 GGTACCCCAACTCAACAA
1 GGTACCCCAACTCAACAA
*
99732366 GGTACCCCAACTCATCAA
1 GGTACCCCAACTCAACAA
99732384 G
1 G
99732385 AAGCTGTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.38, G:0.14, T:0.14
Consensus pattern (18 bp):
GGTACCCCAACTCAACAA
Found at i:99732865 original size:56 final size:56
Alignment explanation
Indices: 99732775--99732885 Score: 179
Period size: 56 Copynumber: 2.0 Consensus size: 56
99732765 TATCATGTTG
* *
99732775 TTTGTTATCCAACTGTTATCTTTTCTAACTAGCAGCCATGTATACCAACTGTTAAA
1 TTTGTTATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAAA
*
99732831 TTTGTATAT-CAATTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
1 TTTGT-TATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
99732886 GCAATTTGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 48 0.94
57 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.40
Consensus pattern (56 bp):
TTTGTTATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAAA
Found at i:99733465 original size:15 final size:14
Alignment explanation
Indices: 99733445--99733489 Score: 58
Period size: 12 Copynumber: 3.3 Consensus size: 14
99733435 CATTTTTCAG
99733445 TCTTCTCTTTCTTCT
1 TCTTCTC-TTCTTCT
99733460 TCTTCTCTTC--CT
1 TCTTCTCTTCTTCT
*
99733472 ACTTCTCTTCTTCT
1 TCTTCTCTTCTTCT
99733486 TCTT
1 TCTT
99733490 TTTTTTCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 11 0.42
14 8 0.31
15 7 0.27
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (14 bp):
TCTTCTCTTCTTCT
Found at i:99740351 original size:26 final size:26
Alignment explanation
Indices: 99740311--99740363 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
99740301 AAAAATATAA
*
99740311 ATGTGAGTAAGAGAAGAATCAAACTT
1 ATGTGAGTAAAAGAAGAATCAAACTT
99740337 ATGTGAGTAAAAGAAGAATCAAACTT
1 ATGTGAGTAAAAGAAGAATCAAACTT
99740363 A
1 A
99740364 AGACTCAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.21, T:0.23
Consensus pattern (26 bp):
ATGTGAGTAAAAGAAGAATCAAACTT
Found at i:99742909 original size:21 final size:20
Alignment explanation
Indices: 99742883--99742940 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
99742873 ATATCAATTA
*
99742883 ATAAAACATATTTAAAATTTT
1 ATAAAA-ATATTTAAAATTCT
*
99742904 ATAAAAATGTATTAAAATTCT
1 ATAAAAATAT-TTAAAATTCT
99742925 ATAAAAA-ATATTAAAA
1 ATAAAAATAT-TTAAAA
99742941 CTGATATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.33
21 22 0.67
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (20 bp):
ATAAAAATATTTAAAATTCT
Found at i:99751453 original size:263 final size:263
Alignment explanation
Indices: 99750986--99751497 Score: 934
Period size: 263 Copynumber: 1.9 Consensus size: 263
99750976 ACATAATAAT
99750986 GTTCTTAAAAACAAATGCAGCTTTTCCATCATCTAGTTACTATTTGTAACATCACCATTAGCACC
1 GTTCTTAAAAACAAATGCAGCTTTTCCATCATCTAGTTACTATTTGTAACATCACCATTAGCACC
99751051 AATAAAGAAAATAAGAAAGATGACCTTGATTAAAAGAATGCCTTCCAACAAACAAAATAACAGGA
66 AATAAAGAAAATAAGAAAGATGACCTTGATTAAAAGAATGCCTTCCAACAAACAAAATAACAGGA
99751116 ACACCTTAATGGTCTATTTTACTGAAACTCTTTCTTTTTCTTCTATTCCAACCATGCAAGGTTCA
131 ACACCTTAATGGTCTATTTTACTGAAACTCTTTCTTTTTCTTCTATTCCAACCATGCAAGGTTCA
* *
99751181 TTAACTTCAGAAGAATTTTAAAAGACAGTTACATTATTCTTATTCATCTTTCTTATTCATTAAGA
196 TTAACTTCAGAAGAACTTTAAAAGACAGTTACATTATCCTTATTCATCTTTCTTATTCATTAAGA
99751246 GAC
261 GAC
*
99751249 GTTCTTAAAAACAAATGCAGCTTTTCCATCATCTAGTTACTTTTTGTAACATCACCATTAGCACC
1 GTTCTTAAAAACAAATGCAGCTTTTCCATCATCTAGTTACTATTTGTAACATCACCATTAGCACC
* * * *
99751314 AATAAAGAAAATAAGAAAGATGGCCTTGATTAAAAGAATGCCTTCCAACAAGCCAAATAACAGTA
66 AATAAAGAAAATAAGAAAGATGACCTTGATTAAAAGAATGCCTTCCAACAAACAAAATAACAGGA
99751379 ACACCTTAATGGTCTATTTTACTGAAACTCTTTCTTTTTCTTCTATTCCAACCATGCAAGGTTCA
131 ACACCTTAATGGTCTATTTTACTGAAACTCTTTCTTTTTCTTCTATTCCAACCATGCAAGGTTCA
* * *
99751444 TTAACTTCAGAAGAACTTTAAAAGGCAGTTATATTCTCCTTATTCATCTTTCTT
196 TTAACTTCAGAAGAACTTTAAAAGACAGTTACATTATCCTTATTCATCTTTCTT
99751498 GTCTCTATGA
Statistics
Matches: 239, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
263 239 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.34
Consensus pattern (263 bp):
GTTCTTAAAAACAAATGCAGCTTTTCCATCATCTAGTTACTATTTGTAACATCACCATTAGCACC
AATAAAGAAAATAAGAAAGATGACCTTGATTAAAAGAATGCCTTCCAACAAACAAAATAACAGGA
ACACCTTAATGGTCTATTTTACTGAAACTCTTTCTTTTTCTTCTATTCCAACCATGCAAGGTTCA
TTAACTTCAGAAGAACTTTAAAAGACAGTTACATTATCCTTATTCATCTTTCTTATTCATTAAGA
GAC
Found at i:99754605 original size:35 final size:35
Alignment explanation
Indices: 99754488--99754715 Score: 257
Period size: 35 Copynumber: 6.6 Consensus size: 35
99754478 CCTTATTGAA
* * * **
99754488 ATACCATACCTACATTTCATA-CTCGGTATGGAAA
1 ATACCATACCTACGTATCATAGCTCAGTATGGACG
* * **
99754522 ATACCATACCTACGTTTCATAACTCAGTAT-GAAA
1 ATACCATACCTACGTATCATAGCTCAGTATGGACG
99754556 ATACCATACCTACGTATCATAGCTCAGTATGGACG
1 ATACCATACCTACGTATCATAGCTCAGTATGGACG
* * *
99754591 ATGCCATACCTACGTATCATAGCTAAGTATGGTCG
1 ATACCATACCTACGTATCATAGCTCAGTATGGACG
*
99754626 ATGCCATACCTACGTATCATAGCTCAGTAT-GATCG
1 ATACCATACCTACGTATCATAGCTCAGTATGGA-CG
* * * **
99754661 ATGCCATACCTACTTATCA-AGCTCGGTATGGTTG
1 ATACCATACCTACGTATCATAGCTCAGTATGGACG
99754695 ATACCATACCTACGTATCATA
1 ATACCATACCTACGTATCATA
99754716 ACTTTGCCAC
Statistics
Matches: 172, Mismatches: 17, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
34 80 0.47
35 92 0.53
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (35 bp):
ATACCATACCTACGTATCATAGCTCAGTATGGACG
Found at i:99754663 original size:70 final size:69
Alignment explanation
Indices: 99754488--99754715 Score: 255
Period size: 69 Copynumber: 3.3 Consensus size: 69
99754478 CCTTATTGAA
* * * ** * * * *
99754488 ATACCATACCTACATTTCATA-CTCGGTATGGAAAATACCATACCTACGTTTCATAACTCAGTAT
1 ATACCATACCTACGTATCATAGCTCAGTATGGACGATGCCATACCTACGTATCA-AGCTAAGTAT
***
99754552 -GAAA
65 GGTCG
99754556 ATACCATACCTACGTATCATAGCTCAGTATGGACGATGCCATACCTACGTATCATAGCTAAGTAT
1 ATACCATACCTACGTATCATAGCTCAGTATGGACGATGCCATACCTACGTATCA-AGCTAAGTAT
99754621 GGTCG
65 GGTCG
* * **
99754626 ATGCCATACCTACGTATCATAGCTCAGTAT-GATCGATGCCATACCTACTTATCAAGCTCGGTAT
1 ATACCATACCTACGTATCATAGCTCAGTATGGA-CGATGCCATACCTACGTATCAAGCTAAGTAT
*
99754690 GGTTG
65 GGTCG
99754695 ATACCATACCTACGTATCATA
1 ATACCATACCTACGTATCATA
99754716 ACTTTGCCAC
Statistics
Matches: 139, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
68 19 0.14
69 70 0.50
70 50 0.36
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (69 bp):
ATACCATACCTACGTATCATAGCTCAGTATGGACGATGCCATACCTACGTATCAAGCTAAGTATG
GTCG
Found at i:99754684 original size:104 final size:104
Alignment explanation
Indices: 99754525--99754715 Score: 276
Period size: 104 Copynumber: 1.8 Consensus size: 104
99754515 ATGGAAAATA
*
99754525 CCATACCTACGTTTCATAACTCAGTATGAAAATACCATACCTACGTATCATAGCTCAGTATGGAC
1 CCATACCTACGTATCATAACTCAGTATGAAAATACCATACCTACGTATCATAGCTCAGTATGGAC
*
99754590 GATGCCATACCTACGTATCATAGCTAAGTATGGTCGATG
66 GATACCATACCTACGTATCATAGCTAAGTATGGTCGATG
* ** * * * *
99754629 CCATACCTACGTATCATAGCTCAGTATGATCGATGCCATACCTACTTATCA-AGCTCGGTATGGT
1 CCATACCTACGTATCATAACTCAGTATGA-AAATACCATACCTACGTATCATAGCTCAGTATGGA
*
99754693 TGATACCATACCTACGTATCATA
65 CGATACCATACCTACGTATCATA
99754716 ACTTTGCCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
104 59 0.78
105 17 0.22
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (104 bp):
CCATACCTACGTATCATAACTCAGTATGAAAATACCATACCTACGTATCATAGCTCAGTATGGAC
GATACCATACCTACGTATCATAGCTAAGTATGGTCGATG
Found at i:99757614 original size:92 final size:91
Alignment explanation
Indices: 99757469--99757638 Score: 220
Period size: 92 Copynumber: 1.9 Consensus size: 91
99757459 TTTTTAACAT
* * **
99757469 ATTCGAGACATAGTCAATCTTTTTACGTGAAATGAGATGACAATTCATGCACCTCACCAC-GGTT
1 ATTCGAGACATAGTCAATCTTTTTACGTCAAATGAGATGACAACTCAAACACCTCACC-CTGGTT
*
99757533 ACTCGATTTGACATTTTTTTTAAATAA
65 ACTCAATTTGACATTTTTTTTAAATAA
* *
99757560 ATTCGAGACATAGTCAAATCTTTTTACG-CAATATGAGGTGACAAC-CTAAACACCTCACCCTTG
1 ATTCGAGACATAGTC-AATCTTTTTACGTCAA-ATGAGATGACAACTC-AAACACCTCACCCTGG
99757623 TTACTCAATTTGACAT
63 TTACTCAATTTGACAT
99757639 ATCCCTAACT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
91 19 0.28
92 49 0.72
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (91 bp):
ATTCGAGACATAGTCAATCTTTTTACGTCAAATGAGATGACAACTCAAACACCTCACCCTGGTTA
CTCAATTTGACATTTTTTTTAAATAA
Found at i:99760027 original size:50 final size:50
Alignment explanation
Indices: 99759891--99760087 Score: 234
Period size: 50 Copynumber: 3.9 Consensus size: 50
99759881 TAGCTAAAGC
* * * *
99759891 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* *
99759940 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
* * * * * *
99759990 CATTTGATACACGTAGTAGCCTGCACTTAGTACTACACGCGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-T
* * * *
99760041 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACAGGTGACCT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
99760088 CACAATAGAT
Statistics
Matches: 122, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
49 41 0.34
50 44 0.36
51 37 0.30
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
Found at i:99760077 original size:101 final size:99
Alignment explanation
Indices: 99759904--99760087 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
99759894 CTGGTACGCA
* * **
99759904 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
99759969 GTACTACACACGTGACCTAACCATTTGATACACG
66 GTACTACACACGTGACCTAACCATTTGATACACG
* * * *
99760003 TAGTAGCCTGCACTTAGTACTACACGCGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
*
99760068 TAGTACTACACAGGTGACCT
64 TAGTACTACACACGTGACCT
99760088 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 28 0.38
100 3 0.04
101 43 0.58
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATTTGATACACG
Found at i:99762463 original size:26 final size:24
Alignment explanation
Indices: 99762434--99762489 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
99762424 TTTTAAATAA
*
99762434 TTTTAGCAATTTTATATTTTTTAAAG
1 TTTTA-CAAATTTATA-TTTTTAAAG
* *
99762460 TTTTCATAAATTTATATTTTTAAAT
1 TTTT-ACAAATTTATATTTTTAAAG
99762485 TTTTA
1 TTTTA
99762490 AATAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 1 0.04
25 12 0.46
26 12 0.46
27 1 0.04
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTTACAAATTTATATTTTTAAAG
Found at i:99762494 original size:26 final size:27
Alignment explanation
Indices: 99762444--99762500 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 27
99762434 TTTTAGCAAT
*
99762444 TTTATATTTTTTAAAGTTTTCAT-AAA
1 TTTATATTTTTTAAAGTTTTAATAAAA
*
99762470 TTTATA-TTTTTAAATTTTTAAATAAAA
1 TTTATATTTTTTAAAGTTTT-AATAAAA
99762497 TTTA
1 TTTA
99762501 ATGCATGTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 12 0.44
26 8 0.30
27 7 0.26
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (27 bp):
TTTATATTTTTTAAAGTTTTAATAAAA
Found at i:99772047 original size:11 final size:11
Alignment explanation
Indices: 99772033--99772073 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
99772023 TGTTTTCTCT
99772033 CTATTTTGCTA
1 CTATTTTGCTA
*
99772044 CTATTTTACTA
1 CTATTTTGCTA
* *
99772055 TTATGTTGCTA
1 CTATTTTGCTA
99772066 CTATTTTG
1 CTATTTTG
99772074 TTGTTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:99772171 original size:30 final size:30
Alignment explanation
Indices: 99772110--99772172 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
99772100 ATTTATTTTA
* *
99772110 TTGTTAATTTTTTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
99772140 TTGTTAATTTTGTTATTATTTTAGAA-ACAT
1 TTGTTAATTTTGTTATTATTTTA-AAGACAT
99772170 TTG
1 TTG
99772173 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:99773543 original size:23 final size:23
Alignment explanation
Indices: 99773512--99773565 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
99773502 CAAATAACCC
99773512 ATATCATTATTTAAAAATAATAAA
1 ATAT-ATTATTTAAAAATAATAAA
* * **
99773536 ATATATTATTTTATAATAATATT
1 ATATATTATTTAAAAATAATAAA
99773559 ATATATT
1 ATATATT
99773566 TTAAAATCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATATTATTTAAAAATAATAAA
Found at i:99773551 original size:20 final size:20
Alignment explanation
Indices: 99773528--99773568 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
99773518 TTATTTAAAA
99773528 ATAATAAAA-TATATTATTTT
1 ATAATAAAATTATA-TATTTT
*
99773548 ATAATAATATTATATATTTT
1 ATAATAAAATTATATATTTT
99773568 A
1 A
99773569 AAATCTTAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATAATAAAATTATATATTTT
Found at i:99775420 original size:15 final size:15
Alignment explanation
Indices: 99775400--99775437 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
99775390 TAACTATACT
99775400 TATCATATATTCTAA
1 TATCATATATTCTAA
*
99775415 TATCAT-TATTTTAA
1 TATCATATATTCTAA
99775429 -ATCATATAT
1 TATCATATAT
99775438 CATTTCATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 5 0.24
14 10 0.48
15 6 0.29
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (15 bp):
TATCATATATTCTAA
Found at i:99775982 original size:20 final size:20
Alignment explanation
Indices: 99775938--99775993 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
99775928 ACATAAAATA
99775938 GGCATCAAAGTGCAAATAGAT
1 GGCA-CAAAGTGCAAATAGAT
*
99775959 -GCACAAATGTGCAATTAG-T
1 GGCACAAA-GTGCAAATAGAT
*
99775978 GGCACCGAAGTGCAAA
1 GGCA-CAAAGTGCAAA
99775994 CAAGGCACCG
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 5 0.17
20 21 0.72
21 3 0.10
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
GGCACAAAGTGCAAATAGAT
Found at i:99789642 original size:13 final size:13
Alignment explanation
Indices: 99789624--99789652 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
99789614 ATGATTGAAT
99789624 TCACATTTCATCA
1 TCACATTTCATCA
99789637 TCACATTTCATCA
1 TCACATTTCATCA
99789650 TCA
1 TCA
99789653 TTTTACCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (13 bp):
TCACATTTCATCA
Found at i:99793010 original size:28 final size:29
Alignment explanation
Indices: 99792979--99793037 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
99792969 CATGGCTGAC
99792979 TTTT-ATCT-CTTGATTTCAATTTCAAT-AT
1 TTTTAATCTACTTG-TTT-AATTTCAATCAT
*
99793007 TTTTAATTTACTTGTTTAATTTCAATCAT
1 TTTTAATCTACTTGTTTAATTTCAATCAT
99793036 TT
1 TT
99793038 ACTTCACTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
28 13 0.48
29 10 0.37
30 4 0.15
ACGTcount: A:0.25, C:0.12, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTAATCTACTTGTTTAATTTCAATCAT
Found at i:99800741 original size:23 final size:23
Alignment explanation
Indices: 99800711--99800757 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
99800701 CTGACGTGGC
* *
99800711 GTCTAGTCAGCAGTTTCTAGAAG
1 GTCTAGTCAGCAATTTCTAAAAG
99800734 GTCTAGTCAGCAATTTCTAAAAG
1 GTCTAGTCAGCAATTTCTAAAAG
99800757 G
1 G
99800758 CATTTGGCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (23 bp):
GTCTAGTCAGCAATTTCTAAAAG
Found at i:99801624 original size:28 final size:28
Alignment explanation
Indices: 99801592--99801650 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
99801582 CAAGGCTGAC
99801592 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
99801620 TTTTAATTTACTTGTTTAATTTCAATCT
1 TTTTAATCTACTTGTTTAATTTCAATCT
99801648 TTT
1 TTT
99801651 ACTTCAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 18 0.64
29 6 0.21
30 4 0.14
ACGTcount: A:0.22, C:0.14, G:0.03, T:0.61
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:99803680 original size:22 final size:22
Alignment explanation
Indices: 99803639--99803694 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
99803629 TTTATGATTT
*
99803639 TTTATAGAATTTT-AATATGTG
1 TTTATAAAATTTTAAATATGTG
*
99803660 TTTATAAAATTTTAAATATGTT
1 TTTATAAAATTTTAAATATGTG
*
99803682 TTTAT-TAATTTTA
1 TTTATAAAATTTTA
99803695 TAATTTTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 19 0.61
22 12 0.39
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (22 bp):
TTTATAAAATTTTAAATATGTG
Found at i:99805150 original size:27 final size:29
Alignment explanation
Indices: 99805118--99805186 Score: 90
Period size: 27 Copynumber: 2.5 Consensus size: 29
99805108 ATGCAACGAG
99805118 TGACATTAAATGTAGGGAAAAAC-ATTAA
1 TGACATTAAATGTAGGGAAAAACTATTAA
** *
99805146 -GACATTAAATACATGGAAAAACTATTAA
1 TGACATTAAATGTAGGGAAAAACTATTAA
99805174 TG-CATTAAATGTA
1 TGACATTAAATGTA
99805187 AGTAAAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
27 19 0.56
28 14 0.41
29 1 0.03
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.28
Consensus pattern (29 bp):
TGACATTAAATGTAGGGAAAAACTATTAA
Found at i:99805193 original size:28 final size:27
Alignment explanation
Indices: 99805119--99805194 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 27
99805109 TGCAACGAGT
*
99805119 GACATTAAATGTAGGGAAAAACATTAA
1 GACATTAAATGTAAGGAAAAACATTAA
** *
99805146 GACATTAAATACATGGAAAAACTATTAA
1 GACATTAAATGTAAGGAAAAAC-ATTAA
*
99805174 TG-CATTAAATGTAAGTAAAAA
1 -GACATTAAATGTAAGGAAAAA
99805195 ACTAGTGTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
27 19 0.47
28 20 0.50
29 1 0.03
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.25
Consensus pattern (27 bp):
GACATTAAATGTAAGGAAAAACATTAA
Found at i:99807036 original size:51 final size:51
Alignment explanation
Indices: 99806978--99807136 Score: 246
Period size: 51 Copynumber: 3.0 Consensus size: 51
99806968 GAAGAAGAGA
* *
99806978 AGCACAAGGGAGAAGCTCATCACGAAGGCGGCCATGGCTATGGCGCTGCTG
1 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG
99807029 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGTTATGGCGCCGCTG
1 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGC------TATGGCGCCGCTG
99807086 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG
1 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG
99807137 CGGCCGCCGG
Statistics
Matches: 100, Mismatches: 2, Indels: 12
0.88 0.02 0.11
Matches are distributed among these distances:
51 50 0.50
57 50 0.50
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (51 bp):
AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG
Found at i:99807104 original size:57 final size:56
Alignment explanation
Indices: 99806978--99807128 Score: 240
Period size: 57 Copynumber: 2.8 Consensus size: 56
99806968 GAAGAAGAGA
* *
99806978 AGCACAAGGGAGAAGCTCATCACGAAGGCGGCCATGGC-----TATGGCGCTGCTG
1 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGTATGGCGCCGCTG
99807029 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGTTATGGCGCCGCTG
1 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGG-TATGGCGCCGCTG
99807086 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGG
1 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGG
99807129 CGCCGCTGCG
Statistics
Matches: 92, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
51 37 0.40
57 55 0.60
ACGTcount: A:0.26, C:0.23, G:0.35, T:0.15
Consensus pattern (56 bp):
AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGTATGGCGCCGCTG
Found at i:99808163 original size:17 final size:20
Alignment explanation
Indices: 99808120--99808173 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
99808110 TGATTTTTAA
*
99808120 TTAATTTTAA-ATATAAATT
1 TTAAATTTAATATATAAATT
*
99808139 TTAAAATT-ATATATAAATT
1 TTAAATTTAATATATAAATT
99808158 TT-AATTTAATATATAA
1 TTAAATTTAATATATAA
99808174 CTGTATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 5 0.17
19 25 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAAATTTAATATATAAATT
Found at i:99808241 original size:31 final size:30
Alignment explanation
Indices: 99808142--99808250 Score: 98
Period size: 31 Copynumber: 3.6 Consensus size: 30
99808132 ATAAATTTTA
99808142 AAAT-TATATAT-AAATTTTAATTTAATATAT
1 AAATGTATATATGAAATTTTAATTTAAT-T-T
* * *
99808172 AACTGTATATATG-AATTTTAATTTAGTAT
1 AAATGTATATATGAAATTTTAATTTAATTT
* * *
99808201 AATTATATATATGAAATTTTAACTGTAATTT
1 AAATGTATATATGAAATTTTAA-TTTAATTT
* *
99808232 AAATGTATATTTAAAATTT
1 AAATGTATATATGAAATTT
99808251 AATATGATTT
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
29 12 0.19
30 11 0.17
31 40 0.63
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (30 bp):
AAATGTATATATGAAATTTTAATTTAATTT
Found at i:99808865 original size:26 final size:26
Alignment explanation
Indices: 99808826--99808882 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
99808816 CATTCCTAAG
*
99808826 TGATTCTAACCTATCACTGGAATTAC
1 TGATTCTAACCTATCACTGAAATTAC
* *
99808852 TGATTCTAATCTATCACTGAAATTAT
1 TGATTCTAACCTATCACTGAAATTAC
99808878 TGATT
1 TGATT
99808883 ACAGCTCTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.40
Consensus pattern (26 bp):
TGATTCTAACCTATCACTGAAATTAC
Found at i:99809856 original size:24 final size:25
Alignment explanation
Indices: 99809805--99809852 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
99809795 TTTTTTATAT
* *
99809805 TTTTTTTATTAATTTATATATTTTA
1 TTTTTTTATAAATTTATAAATTTTA
99809830 TTTTTTTA-AAATTTA-AAATTTTA
1 TTTTTTTATAAATTTATAAATTTTA
99809853 ATTTCCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 6 0.29
25 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTTTTATAAATTTATAAATTTTA
Found at i:99810787 original size:9 final size:9
Alignment explanation
Indices: 99810773--99810797 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
99810763 TTTAAATATC
99810773 TTTTTTCAT
1 TTTTTTCAT
99810782 TTTTTTCAT
1 TTTTTTCAT
99810791 TTTTTTC
1 TTTTTTC
99810798 GTCTTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTCAT
Found at i:99814515 original size:14 final size:14
Alignment explanation
Indices: 99814479--99814515 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
99814469 TGCTACTATT
*
99814479 TTACTATTATGTTG
1 TTACTATTTTGTTG
99814493 TTACTATTTTGTTG
1 TTACTATTTTGTTG
*
99814507 TTATTATTT
1 TTACTATTT
99814516 GGGTATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.19, C:0.05, G:0.11, T:0.65
Consensus pattern (14 bp):
TTACTATTTTGTTG
Found at i:99816091 original size:44 final size:44
Alignment explanation
Indices: 99816028--99816119 Score: 184
Period size: 44 Copynumber: 2.1 Consensus size: 44
99816018 ATGAAATTGT
99816028 AATGTTAACATGCATACCAAAAATATAATAAACGCAACAACATA
1 AATGTTAACATGCATACCAAAAATATAATAAACGCAACAACATA
99816072 AATGTTAACATGCATACCAAAAATATAATAAACGCAACAACATA
1 AATGTTAACATGCATACCAAAAATATAATAAACGCAACAACATA
99816116 AATG
1 AATG
99816120 ACAATAATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.54, C:0.17, G:0.08, T:0.21
Consensus pattern (44 bp):
AATGTTAACATGCATACCAAAAATATAATAAACGCAACAACATA
Found at i:99816095 original size:21 final size:21
Alignment explanation
Indices: 99816028--99816095 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
99816018 ATGAAATTGT
99816028 AATGTTAACATGCATACCAAA
1 AATGTTAACATGCATACCAAA
* * *
99816049 AATATAATAA-ACGCA-ACAACATA
1 AATGT--TAACATGCATAC--CAAA
99816072 AATGTTAACATGCATACCAAA
1 AATGTTAACATGCATACCAAA
99816093 AAT
1 AAT
99816096 ATAATAAACG
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
21 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.53, C:0.18, G:0.07, T:0.22
Consensus pattern (21 bp):
AATGTTAACATGCATACCAAA
Found at i:99817652 original size:22 final size:22
Alignment explanation
Indices: 99817627--99817690 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 22
99817617 CCTATGCCTT
99817627 TGCTATTTTCTTGCTTTGTTTC
1 TGCTATTTTCTTGCTTTGTTTC
* *
99817649 TGCTCTGTTT-TTGCCTTT-TTGC
1 TGCTAT-TTTCTTG-CTTTGTTTC
* *
99817671 T-CTGTTGTCTTGCTTTGTTT
1 TGCTATTTTCTTGCTTTGTTT
99817691 TCTTTTTTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 9
0.70 0.11 0.19
Matches are distributed among these distances:
20 6 0.18
21 8 0.24
22 12 0.36
23 7 0.21
ACGTcount: A:0.02, C:0.19, G:0.17, T:0.62
Consensus pattern (22 bp):
TGCTATTTTCTTGCTTTGTTTC
Found at i:99820704 original size:36 final size:36
Alignment explanation
Indices: 99820649--99820726 Score: 102
Period size: 36 Copynumber: 2.2 Consensus size: 36
99820639 AGTTTCGCCT
*
99820649 AGCATTGGTCGGTAAAACTGACAAATAGATATGCCA
1 AGCACTGGTCGGTAAAACTGACAAATAGATATGCCA
* * * * *
99820685 AGCACTGGTTGGTATAACTGACAAATAGGTGTGCCT
1 AGCACTGGTCGGTAAAACTGACAAATAGATATGCCA
99820721 AGCACT
1 AGCACT
99820727 CCTCGACACG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (36 bp):
AGCACTGGTCGGTAAAACTGACAAATAGATATGCCA
Found at i:99827219 original size:96 final size:96
Alignment explanation
Indices: 99827092--99827285 Score: 289
Period size: 96 Copynumber: 2.0 Consensus size: 96
99827082 TCGCTTCTTT
* * *
99827092 TTGCTCCTCTTAGCCTTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCATT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTAGGCTCAGT
* * *
99827157 GTCTGCTCCATCGTTCCCTTCGATAACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
* * * *
99827188 TTGCTCCTCTTTGCCCTCTTGGCTTTGGCTTTTCCCTTGCTCGAACCAAGCTTCTTAGGCTCCGT
1 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTAGGCTCAGT
*
99827253 ATCTGCTCGATCATTCCCATCGATAACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
99827284 TT
1 TT
99827286 CCTTGGACAC
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.14, C:0.33, G:0.17, T:0.36
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTAGGCTCAGT
ATCTGCTCCATCATTCCCATCGATAACAGAC
Found at i:99834379 original size:16 final size:17
Alignment explanation
Indices: 99834355--99834396 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
99834345 TTATGTTTTT
*
99834355 TCATGTATTTTTT-GTA
1 TCATATATTTTTTAGTA
*
99834371 TCATATATTTTTTATTA
1 TCATATATTTTTTAGTA
99834388 TCATATATT
1 TCATATATT
99834397 CTGTTAACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (17 bp):
TCATATATTTTTTAGTA
Found at i:99835277 original size:131 final size:131
Alignment explanation
Indices: 99834914--99835512 Score: 571
Period size: 131 Copynumber: 4.6 Consensus size: 131
99834904 AAGTATCCAT
* * * * * * * * * **
99834914 TTAAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAACTCGGGAAT-AGTGCCCTAACG
1 TTAAAAATCCTTTAAAACGAAGGCAATATTCGGTGTTTGACAATTCGAGAATCA-TGCCCTATTG
* ** * ***
99834978 TGTTGGGTTGCAATTTCGT-GTTTGCTCAAAACAATCGAATA-TCTCTTCAAAATTTCACTCATA
65 TGCTGGGTTGTGATTTC-TCGTTTGCTCAAAACAATCGAATATTC-CTTTAGGTTTTCACTCAT-
**
99835041 CCTT-
127 GTTTA
* * * * * ** ** * * **
99835045 TCAAAAATTCTTCAAAACGAAGGCGATATTCGATACTTGGTAATTCGTGGAATCGTGCCCTAACG
1 TTAAAAATCCTTTAAAACGAAGGCAATATTCGGTGTTTGACAATTCG-AGAATCATGCCCTATTG
* ** ** ** * ** *
99835110 TGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACTCGTGTC
65 TGCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGT-
99835175 TT-
129 TTA
* * *
99835177 CTAAAAATCCTTTAAAACGAAGGCAATACTCGGTGTTTAACAATTCGAGAATCATGCCCTATTGT
1 TTAAAAATCCTTTAAAACGAAGGCAATATTCGGTGTTTGACAATTCGAGAATCATGCCCTATTGT
99835242 GCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTT
66 GCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTT
99835307 A
131 A
* *
99835308 TTAAAAATCCTTTAAAACGAAGGCAACATTCGGTGTTTGACAATTCGAGAATCATGCACTATTGT
1 TTAAAAATCCTTTAAAACGAAGGCAATATTCGGTGTTTGACAATTCGAGAATCATGCCCTATTGT
*
99835373 GCTGGGTTGTGATTCCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTT
66 GCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTT
99835438 A
131 A
* * * * * * * *
99835439 TTAAAAAT-CTTTCAAAACGAAGGCGATGTTTGATGTTTGGCGATTTGAGAATCAAGCCCTATTG
1 TTAAAAATCCTTT-AAAACGAAGGCAATATTCGGTGTTTGACAATTCGAGAATCATGCCCTATTG
99835503 TGCTGGGTTG
65 TGCTGGGTTG
99835513 CGCTTTTTCA
Statistics
Matches: 400, Mismatches: 61, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
130 6 0.01
131 291 0.73
132 102 0.25
133 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (131 bp):
TTAAAAATCCTTTAAAACGAAGGCAATATTCGGTGTTTGACAATTCGAGAATCATGCCCTATTGT
GCTGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTT
A
Found at i:99841698 original size:15 final size:15
Alignment explanation
Indices: 99841678--99841707 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99841668 GTCACTTGTT
99841678 CGTCTGTGACACACG
1 CGTCTGTGACACACG
99841693 CGTCTGTGACACACG
1 CGTCTGTGACACACG
99841708 ACCGTGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (15 bp):
CGTCTGTGACACACG
Found at i:99860777 original size:47 final size:47
Alignment explanation
Indices: 99860666--99861138 Score: 794
Period size: 47 Copynumber: 10.1 Consensus size: 47
99860656 GAAATGATAG
99860666 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99860712 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99860759 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
99860808 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
99860855 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99860902 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99860949 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
99860997 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
99861043 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
99861089 -CAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99861135 TAAG
1 TAAG
99861139 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 12, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
45 26 0.06
46 111 0.27
47 177 0.43
48 46 0.11
49 47 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:99861312 original size:37 final size:37
Alignment explanation
Indices: 99861256--99861334 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
99861246 CCGAGCTCTA
* * *
99861256 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
99861293 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
99861330 AAGAC
1 AAGAC
99861335 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:99863124 original size:43 final size:43
Alignment explanation
Indices: 99863076--99863178 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
99863066 TTGGTTTTCA
99863076 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
99863119 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
99863162 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
99863179 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:99863195 original size:29 final size:29
Alignment explanation
Indices: 99863160--99863233 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
99863150 GTTGTGAGAT
* *
99863160 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
99863189 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
99863218 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
99863234 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:99863645 original size:39 final size:40
Alignment explanation
Indices: 99863544--99863687 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
99863534 TCGAATGATG
* *
99863544 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
99863583 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
99863624 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
99863663 TCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
99863688 CATGCTAGTG
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
39 35 0.39
40 37 0.41
41 17 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:99863706 original size:40 final size:40
Alignment explanation
Indices: 99863624--99863778 Score: 172
Period size: 40 Copynumber: 3.9 Consensus size: 40
99863614 AGATACTAAT
** * *
99863624 TCCGGGCTAAG-CCCGAAG-GCATTGGTGC-GAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTG-GTGA-TATA
* *
99863663 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATATA
* * *
99863703 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATATA
* *
99863743 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGA
99863779 CGTGTATTCG
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 11 0.11
40 75 0.77
41 11 0.11
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATATA
Found at i:99867412 original size:47 final size:47
Alignment explanation
Indices: 99867346--99867769 Score: 746
Period size: 47 Copynumber: 9.1 Consensus size: 47
99867336 GAAATGATAG
99867346 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99867393 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99867438 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99867485 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99867532 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99867579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99867626 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
99867672 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
99867719 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
99867766 TAAG
1 TAAG
99867770 TCCCGAAGGG
Statistics
Matches: 362, Mismatches: 12, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
45 45 0.12
46 46 0.13
47 271 0.75
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:99867415 original size:22 final size:22
Alignment explanation
Indices: 99867387--99867460 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
99867377 AAGTGTATAT
99867387 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
99867409 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
99867432 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
99867454 ATGTGAT
1 ATGTGAT
99867461 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:99867715 original size:187 final size:186
Alignment explanation
Indices: 99867346--99867769 Score: 742
Period size: 187 Copynumber: 2.3 Consensus size: 186
99867336 GAAATGATAG
99867346 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
99867411 GTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
99867476 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
99867532 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
99867597 GTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
99867661 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
129 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
* * * * * * * *
99867719 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
99867770 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
186 83 0.37
187 134 0.59
188 10 0.04
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (186 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
Found at i:99867943 original size:36 final size:37
Alignment explanation
Indices: 99867888--99867965 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
99867878 CCGAGCTCTA
* *
99867888 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
99867924 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
99867961 AAGAC
1 AAGAC
99867966 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:99874953 original size:20 final size:20
Alignment explanation
Indices: 99874908--99874953 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
99874898 ATACAATTCA
*
99874908 AACAGAACAAAACCAAATAG
1 AACAGAACAAAACAAAATAG
* *
99874928 AGCAGAACAAAACAAAATGG
1 AACAGAACAAAACAAAATAG
99874948 AACAGA
1 AACAGA
99874954 GCAGAGTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.63, C:0.17, G:0.15, T:0.04
Consensus pattern (20 bp):
AACAGAACAAAACAAAATAG
Found at i:99876014 original size:42 final size:42
Alignment explanation
Indices: 99875947--99876054 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
99875937 GCCTGGGCCT
** * *
99875947 ACGCCCATGTCCTTGCCTGTATGGCTCAAACA-GTC-TAGGCAC
1 ACGCCCATGTCCTTGCCCATGTGGCTC--ACATGGCTTAGGCAC
*
99875989 ACGTCCATGTCCTTGCCCATGTGGCTCACATGGCTTAGGCAC
1 ACGCCCATGTCCTTGCCCATGTGGCTCACATGGCTTAGGCAC
*
99876031 ATGCCCATGTCCCTTG-CCATGTGG
1 ACGCCCATGT-CCTTGCCCATGTGG
99876055 TTCTAAAGCG
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
40 3 0.05
41 2 0.04
42 46 0.82
43 5 0.09
ACGTcount: A:0.18, C:0.33, G:0.23, T:0.26
Consensus pattern (42 bp):
ACGCCCATGTCCTTGCCCATGTGGCTCACATGGCTTAGGCAC
Found at i:99880966 original size:46 final size:47
Alignment explanation
Indices: 99880862--99880975 Score: 149
Period size: 46 Copynumber: 2.4 Consensus size: 47
99880852 TGTCTTCGAC
** * *
99880862 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
99880910 ATGGGCTTACATGGCTCATTCCTGTCTCTAAAGCC-ATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
99880956 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
99880976 TTTGTCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 29 0.50
48 29 0.50
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:99885472 original size:24 final size:24
Alignment explanation
Indices: 99885430--99885490 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
99885420 CATTATAAAT
* *
99885430 AAAATAAC-TAAACATATCTATTA
1 AAAATAACTTTAACACATCTATTA
99885453 AAAATAACTTTAACACATCTATTA
1 AAAATAACTTTAACACATCTATTA
99885477 AAACAT-ACTTTAAC
1 AAA-ATAACTTTAAC
99885491 GGAATGATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 8 0.24
24 24 0.71
25 2 0.06
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.31
Consensus pattern (24 bp):
AAAATAACTTTAACACATCTATTA
Found at i:99887076 original size:16 final size:16
Alignment explanation
Indices: 99887049--99887088 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
99887039 AAATACATTT
*
99887049 ATATTTATTTTATTTTA
1 ATATTTA-TTTATTATA
99887066 ATATTTATTTATTATA
1 ATATTTATTTATTATA
99887082 AT-TTTAT
1 ATATTTAT
99887089 ATATAGTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.23
16 10 0.45
17 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATATTTATTTATTATA
Found at i:99887076 original size:21 final size:23
Alignment explanation
Indices: 99887050--99887092 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
99887040 AATACATTTA
*
99887050 TATTTATT-TTATTTTA-ATATT
1 TATTTATTATAATTTTATATATT
99887071 TATTTATTATAATTTTATATAT
1 TATTTATTATAATTTTATATAT
99887093 AGTGATCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TATTTATTATAATTTTATATATT
Found at i:99888133 original size:18 final size:18
Alignment explanation
Indices: 99888110--99888199 Score: 137
Period size: 18 Copynumber: 5.0 Consensus size: 18
99888100 TAGATTGTAT
*
99888110 ATCATATCTAATATTGCA
1 ATCATATCTAAGATTGCA
*
99888128 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCA
99888145 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGCA
99888163 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGCA
*
99888181 TATCACATCTAAGATTGCA
1 -ATCATATCTAAGATTGCA
99888200 TATAATTGAA
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
17 16 0.24
18 33 0.50
19 17 0.26
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (18 bp):
ATCATATCTAAGATTGCA
Found at i:99888194 original size:37 final size:36
Alignment explanation
Indices: 99888101--99888199 Score: 155
Period size: 35 Copynumber: 2.7 Consensus size: 36
99888091 ATATCTTCTT
*
99888101 AGATTGTATATCATATCTAATATTGCAATCATATCTA
1 AGATTG-ATATCATATCTAAGATTGCAATCATATCTA
99888138 AGATTG-TATCATATCTAAGATTGCAATCATATCTA
1 AGATTGATATCATATCTAAGATTGCAATCATATCTA
*
99888173 AGATTGCATATCACATCTAAGATTGCA
1 AGATTG-ATATCATATCTAAGATTGCA
99888200 TATAATTGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
35 34 0.59
37 24 0.41
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (36 bp):
AGATTGATATCATATCTAAGATTGCAATCATATCTA
Found at i:99889097 original size:192 final size:193
Alignment explanation
Indices: 99888579--99889272 Score: 942
Period size: 192 Copynumber: 3.5 Consensus size: 193
99888569 AAATCTGCTT
* * * * * *
99888579 CTTCAATTTGTTCCCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
* * *
99888644 GCGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * **
99888709 GGATC-TGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCAAATAT
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGC--TA------T--T--GT--AATAT
99888773 GGAGACGCCAAA
182 GGAGACGCCAAA
*
99888785 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATTTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
99888850 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
99888915 GGATCTTGCTTCAATATAAGCATCTGAAGGCCAGATCTGCTA-TGTAATATGGAGACGCCAAA
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATTGTAATATGGAGACGCCAAA
99888977 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
99889042 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
99889107 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAAATCTGCTATGTGTCTACCCTCCATATGGAGA
131 GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTAT-TG--TA------ATATGGAGA
99889172 CGCCAAA
187 CGCCAAA
* * * * * *
99889179 CTTTGATTTGTTCTTTGACAATACAGAAATGCCAAATCATCTTAGATTTGCTTCATCATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
*
99889244 GTGAAAGCCAAATCAGCTATATCTTCGAT
66 GTGAAAGCCAAATCAGCTATGTCTTCGAT
99889273 CTGCTCTCCG
Statistics
Matches: 450, Mismatches: 27, Indels: 26
0.89 0.05 0.05
Matches are distributed among these distances:
192 184 0.41
194 4 0.01
196 3 0.01
202 103 0.23
205 2 0.00
206 125 0.28
207 29 0.06
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (193 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATTGTAATATGGAGACGCCAAA
Found at i:99889570 original size:87 final size:86
Alignment explanation
Indices: 99889397--99889686 Score: 389
Period size: 87 Copynumber: 3.4 Consensus size: 86
99889387 TCTGCTATAC
* *
99889397 TTTAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TC-T--TCGATCTGCTCCACTACTG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTCGTCGTCGATCTGCTCCGCTACTG
*
99889458 CTTAGGGAGATAAGATCTACAAT
65 CTTAGGGAGATAAGATCT-TAAT
* * *
99889481 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTTGATCTGTTCTGCTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACTGC
99889546 TTAGGGAGATAAGATCTGTAAT
66 TTAGGGAGATAAGATCT-TAAT
* * *
99889568 TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCGTCGTCGATCTACTCCGCTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACTGC
*
99889633 TTAAGGAGATAAGATC-T-A-
66 TTAGGGAGATAAGATCTTAAT
**
99889651 -CGAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
99889687 CTGAATTTTG
Statistics
Matches: 184, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
82 32 0.17
83 1 0.01
84 39 0.21
85 2 0.01
87 110 0.60
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (86 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACTGC
TTAGGGAGATAAGATCTTAAT
Found at i:99889589 original size:43 final size:42
Alignment explanation
Indices: 99889452--99889594 Score: 123
Period size: 43 Copynumber: 3.3 Consensus size: 42
99889442 ATCTGCTCCA
**
99889452 CTACTGCTTAGGGAGATAAGATCTACAATTTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTT-ACCTGTTACC
** * * *
99889495 CTACTGCTTAGGG-GATTAAGGCGAGTC-GT-CGTTGATCTGTT-CTG
1 CTACTGCTTAGGGAGA-TAA---GA-TCTGTAATTTTACCTGTTAC-C
99889539 CTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTA-CCTGTTACC
99889582 CTACTGCTTAGGG
1 CTACTGCTTAGGG
99889595 GGTTAAGGCG
Statistics
Matches: 77, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
40 2 0.03
41 4 0.05
42 5 0.06
43 35 0.45
44 23 0.30
45 4 0.05
46 2 0.03
47 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTACCTGTTACC
Found at i:99890643 original size:1 final size:1
Alignment explanation
Indices: 99890633--99890711 Score: 68
Period size: 1 Copynumber: 79.0 Consensus size: 1
99890623 GGCCTCTCCA
* * * * * * * *
99890633 TTTTTCTTTTTTTTTTTTTTTTCTTTTTTTCTTTTTTTCTCTTTTTCTTTTCTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
99890698 TTCTTCTTTTTTTT
1 TTTTTTTTTTTTTT
99890712 GAAATAGAAG
Statistics
Matches: 58, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:99890650 original size:8 final size:8
Alignment explanation
Indices: 99890633--99890708 Score: 95
Period size: 8 Copynumber: 9.6 Consensus size: 8
99890623 GGCCTCTCCA
99890633 TTTTTCTTT
1 TTTTTC-TT
*
99890642 TTTTTTTT
1 TTTTTCTT
99890650 TTTTTCTT
1 TTTTTCTT
99890658 TTTTTCTT
1 TTTTTCTT
*
99890666 TTTTTCTC
1 TTTTTCTT
99890674 TTTTTC--
1 TTTTTCTT
99890680 -TTTTCTT
1 TTTTTCTT
99890687 TTTTTCTT
1 TTTTTCTT
99890695 TTTTTCTT
1 TTTTTCTT
99890703 CTTTTT
1 -TTTTT
99890709 TTTGAAATAG
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
5 5 0.08
8 45 0.75
9 10 0.17
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTCTT
Found at i:99890669 original size:21 final size:20
Alignment explanation
Indices: 99890633--99890711 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 20
99890623 GGCCTCTCCA
99890633 TTTTTCTTTTTTTTTTTTTT
1 TTTTTCTTTTTTTTTTTTTT
* *
99890653 TTCTTT-TTTTCTTTTTTTCTC
1 TT-TTTCTTTT-TTTTTTTTTT
*
99890674 TTTTTCTTTTCTTTTTTTCTT
1 TTTTTCTTTT-TTTTTTTTTT
99890695 TTTTTCTTCTTTTTTTT
1 TTTTTCTT-TTTTTTTT
99890712 GAAATAGAAG
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
20 9 0.17
21 41 0.79
22 2 0.04
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTCTTTTTTTTTTTTTT
Found at i:99890687 original size:29 final size:27
Alignment explanation
Indices: 99890634--99890710 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 27
99890624 GCCTCTCCAT
99890634 TTTTCTTTTTTT-TTTTTTTTTCT-TT
1 TTTTCTTTTTTTCTTTTTTTTTCTCTT
99890659 TTTTCTTTTTTTCTCTTTTTCTTT-TCTTT
1 TTTTCTTTTTTTCT-TTTTT-TTTCTC-TT
99890688 TTTTCTTTTTTTCTTCTTTTTTT
1 TTTTCTTTTTTTCTT-TTTTTTT
99890711 TGAAATAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
25 12 0.26
26 1 0.02
27 6 0.13
28 7 0.15
29 20 0.43
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (27 bp):
TTTTCTTTTTTTCTTTTTTTTTCTCTT
Found at i:99896511 original size:35 final size:36
Alignment explanation
Indices: 99896469--99896539 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
99896459 TAATATTGTA
*
99896469 TATCATATCTAAGATTGCA-ATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCACATCTAAGATTG
99896504 TATCATATCTAAGATTGCATATCACATCTAAGATTG
1 TATCATATCTAAGATTGCATATCACATCTAAGATTG
99896540 CATATCATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCACATCTAAGATTG
Found at i:99896526 original size:14 final size:15
Alignment explanation
Indices: 99896471--99896526 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
99896461 ATATTGTATA
99896471 TCATATCTAAGATTG
1 TCATATCTAAGATTG
99896486 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
99896504 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
99896521 -CATATC
1 TCATATC
99896527 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:99896532 original size:19 final size:19
Alignment explanation
Indices: 99896463--99896547 Score: 131
Period size: 19 Copynumber: 4.6 Consensus size: 19
99896453 ATCTTTTAAT
*
99896463 ATTGTATATCATATCTAAG
1 ATTGCATATCATATCTAAG
99896482 ATTGCA-ATCATATCTAAG
1 ATTGCATATCATATCTAAG
99896500 ATTG--TATCATATCTAAG
1 ATTGCATATCATATCTAAG
*
99896517 ATTGCATATCACATCTAAG
1 ATTGCATATCATATCTAAG
99896536 ATTGCATATCAT
1 ATTGCATATCAT
99896548 TGAAGATTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.27
18 16 0.27
19 28 0.47
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
ATTGCATATCATATCTAAG
Found at i:99896554 original size:36 final size:35
Alignment explanation
Indices: 99896469--99896555 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 35
99896459 TAATATTGTA
* *
99896469 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCGAAGATTGCAATCACATCTAAGATTG
*
99896504 TATCATATCTAAGATTGCATATCACATCTAAGATTG
1 TATCATATCGAAGATTGCA-ATCACATCTAAGATTG
99896540 CATATCAT-T-GAAGATT
1 --TATCATATCGAAGATT
99896556 ATATTTCCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
35 19 0.40
36 21 0.45
37 1 0.02
38 6 0.13
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (35 bp):
TATCATATCGAAGATTGCAATCACATCTAAGATTG
Found at i:99897165 original size:12 final size:12
Alignment explanation
Indices: 99897148--99897172 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99897138 GGTGTTCATT
99897148 CGGTTAACCGAC
1 CGGTTAACCGAC
99897160 CGGTTAACCGAC
1 CGGTTAACCGAC
99897172 C
1 C
99897173 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:99897346 original size:9 final size:9
Alignment explanation
Indices: 99897332--99897381 Score: 82
Period size: 9 Copynumber: 5.6 Consensus size: 9
99897322 TTTGGTTAAA
99897332 AATTACCCG
1 AATTACCCG
99897341 AATTACCCG
1 AATTACCCG
99897350 AATTACCCG
1 AATTACCCG
*
99897359 AATTAACCG
1 AATTACCCG
*
99897368 AATTAACCG
1 AATTACCCG
99897377 AATTA
1 AATTA
99897382 ACTGAATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.40, C:0.26, G:0.10, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:99897355 original size:18 final size:18
Alignment explanation
Indices: 99897332--99897389 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
99897322 TTTGGTTAAA
*
99897332 AATTACCCGAATTACCCG
1 AATTACCCGAATTAACCG
99897350 AATTACCCGAATTAACCG
1 AATTACCCGAATTAACCG
* *
99897368 AATTAACCGAATTAACTG
1 AATTACCCGAATTAACCG
99897386 AATT
1 AATT
99897390 TTTTTTATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (18 bp):
AATTACCCGAATTAACCG
Found at i:99897382 original size:9 final size:9
Alignment explanation
Indices: 99897332--99897389 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
99897322 TTTGGTTAAA
*
99897332 AATTACCCG
1 AATTAACCG
*
99897341 AATTACCCG
1 AATTAACCG
*
99897350 AATTACCCG
1 AATTAACCG
99897359 AATTAACCG
1 AATTAACCG
99897368 AATTAACCG
1 AATTAACCG
*
99897377 AATTAACTG
1 AATTAACCG
99897386 AATT
1 AATT
99897390 TTTTTTATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:99898569 original size:19 final size:20
Alignment explanation
Indices: 99898524--99898571 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
99898514 CTTTATAATA
*
99898524 TTTAATGTTTTTAATACTTT
1 TTTAATTTTTTTAATACTTT
* *
99898544 TGT-ATTTTTTTAAT-TTTT
1 TTTAATTTTTTTAATACTTT
99898562 TTTAATTTTT
1 TTTAATTTTT
99898572 ATGTGATGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 16 0.70
20 2 0.09
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTAATTTTTTTAATACTTT
Found at i:99899859 original size:18 final size:18
Alignment explanation
Indices: 99899836--99899890 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
99899826 ATGTAAACCT
*
99899836 TTTTGTATTCGAACCCCC
1 TTTTGTATGCGAACCCCC
* *
99899854 TTTTGTCTGCGAACCTCC
1 TTTTGTATGCGAACCCCC
* *
99899872 -TTTATATGCAAACCCCC
1 TTTTGTATGCGAACCCCC
99899889 TT
1 TT
99899891 ACTGCAACCC
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.18, C:0.33, G:0.11, T:0.38
Consensus pattern (18 bp):
TTTTGTATGCGAACCCCC
Found at i:99900201 original size:14 final size:14
Alignment explanation
Indices: 99900182--99900208 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
99900172 ATATTGTTAT
99900182 TACATGTAAGTCAA
1 TACATGTAAGTCAA
99900196 TACATGTAAGTCA
1 TACATGTAAGTCA
99900209 GAATATTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (14 bp):
TACATGTAAGTCAA
Found at i:99902147 original size:68 final size:67
Alignment explanation
Indices: 99902074--99902223 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
99902064 CATCATGTGT
* * * * *
99902074 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
99902136 ATGTAG
62 ATGTAG
* * *
99902142 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
99902207 AG
66 AG
99902209 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
99902224 GATAAACTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 19 0.27
65 7 0.10
66 5 0.07
67 27 0.38
68 13 0.18
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:99903837 original size:30 final size:29
Alignment explanation
Indices: 99903793--99903854 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
99903783 ATATAAATTT
* *
99903793 AAAATAAAATATATATATATTGAAAATAA
1 AAAATAAAATATATAAAAATTGAAAATAA
*
99903822 AAAATATATATATATAAAAATTGAAAATAA
1 AAAATA-AAATATATAAAAATTGAAAATAA
99903852 AAA
1 AAA
99903855 TAACAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (29 bp):
AAAATAAAATATATAAAAATTGAAAATAA
Found at i:99903848 original size:24 final size:24
Alignment explanation
Indices: 99903766--99903842 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 24
99903756 ATATTAAAAA
* *
99903766 TAAAAATAAGAAATAATATATAAAT
1 TAAAAATAAAAAAT-ATATATATAT
*
99903791 TTAAAAT--AAAATATATATATAT
1 TAAAAATAAAAAATATATATATAT
*
99903813 TGAAAATAAAAAATATATATATA-
1 TAAAAATAAAAAATATATATATAT
99903836 TAAAAAT
1 TAAAAAT
99903843 TGAAAATAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
22 15 0.33
23 10 0.22
24 14 0.31
25 6 0.13
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (24 bp):
TAAAAATAAAAAATATATATATAT
Found at i:99903856 original size:53 final size:53
Alignment explanation
Indices: 99903750--99903853 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 53
99903740 AGATATTACA
* *
99903750 ATATATATATTAAAAATAAAAATAAGAAATAATATATAAATTTAAAATAAAAT
1 ATATATATATTAAAAATAAAAATAAGAAATAATATAAAAATTGAAAATAAAAT
* * *
99903803 ATATATATATTGAAAAT-AAAA-AATATATATATATAAAAATTGAAAATAAAA
1 ATATATATATTAAAAATAAAAATAAGAAATA-ATATAAAAATTGAAAATAAAA
99903854 ATAACAAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 6 0.13
52 23 0.51
53 16 0.36
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (53 bp):
ATATATATATTAAAAATAAAAATAAGAAATAATATAAAAATTGAAAATAAAAT
Found at i:99904151 original size:26 final size:27
Alignment explanation
Indices: 99904117--99904178 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 27
99904107 AAATTGACTT
99904117 TTTTATTTTGTT-TATA-T-TTTTA-AA
1 TTTTATTTT-TTATATATTGTTTTAGAA
*
99904141 TTTTATTTTTTATATATTGTTTTAGAT
1 TTTTATTTTTTATATATTGTTTTAGAA
99904168 TTTTATTTTTT
1 TTTTATTTTTT
99904179 TTAAAAGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
23 2 0.06
24 13 0.39
25 1 0.03
26 5 0.15
27 12 0.36
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (27 bp):
TTTTATTTTTTATATATTGTTTTAGAA
Found at i:99905407 original size:17 final size:17
Alignment explanation
Indices: 99905382--99905423 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
99905372 ATATATTTTT
99905382 TTTAATTTTATGAATTA
1 TTTAATTTTATGAATTA
* *
99905399 TTTATTTTTTTGAATT-
1 TTTAATTTTATGAATTA
*
99905415 TTAAATTTT
1 TTTAATTTT
99905424 TATTTTATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTAATTTTATGAATTA
Found at i:99905414 original size:26 final size:23
Alignment explanation
Indices: 99905375--99905429 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 23
99905365 ATTTCATATA
*
99905375 TATTTTTTTTAATTTTATGAATTATT
1 TATTTTTTTGAATTTTA--AATT-TT
99905401 TATTTTTTTGAATTTTAAATTTT
1 TATTTTTTTGAATTTTAAATTTT
99905424 TATTTT
1 TATTTT
99905430 ATAAGATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 8 0.29
24 4 0.14
26 16 0.57
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (23 bp):
TATTTTTTTGAATTTTAAATTTT
Found at i:99907217 original size:20 final size:22
Alignment explanation
Indices: 99907175--99907217 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
99907165 TTTAGAAGCA
* *
99907175 AGAAAATAGTAGATGAAAGTGG
1 AGAAAATAGTAGAAGAAAATGG
99907197 AGAAAAT-G-AGAAGAAAATGG
1 AGAAAATAGTAGAAGAAAATGG
99907217 A
1 A
99907218 AGGAAAGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 1 0.05
22 7 0.37
ACGTcount: A:0.56, C:0.00, G:0.30, T:0.14
Consensus pattern (22 bp):
AGAAAATAGTAGAAGAAAATGG
Found at i:99908563 original size:19 final size:17
Alignment explanation
Indices: 99908523--99908555 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
99908513 TTTGTAGAAC
*
99908523 TTTAAAAATTTTGTTAA
1 TTTATAAATTTTGTTAA
99908540 TTTATAAATTTTGTTA
1 TTTATAAATTTTGTTA
99908556 TCTTTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (17 bp):
TTTATAAATTTTGTTAA
Found at i:99913634 original size:11 final size:12
Alignment explanation
Indices: 99913594--99913646 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
99913584 AATTTGTGTA
* *
99913594 TTGTTTTAAGAA
1 TTGTTTTAATAT
99913606 TTGTTTTAATAT
1 TTGTTTTAATAT
99913618 TAT-TTTT--TAT
1 T-TGTTTTAATAT
99913628 TTGTTTTAATAT
1 TTGTTTTAATAT
99913640 TTGTTTT
1 TTGTTTT
99913647 CATGTTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
9 1 0.03
10 8 0.23
12 25 0.71
13 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.68
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:99920787 original size:6 final size:6
Alignment explanation
Indices: 99920778--99920828 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
99920768 ATGTCAGTAC
99920778 TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG
1 TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG TGGCTG
99920826 TGG
1 TGG
99920829 ACTGACTATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.33
Consensus pattern (6 bp):
TGGCTG
Found at i:99922043 original size:31 final size:31
Alignment explanation
Indices: 99921995--99922057 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
99921985 AAATGGTCGC
* *
99921995 TGAACTATTCAAAAATTTTCATTTAAGTCAT
1 TGAACTATTCAAAAATTTTAATTCAAGTCAT
* *
99922026 TGAATTATTTAAAAATTTTAATTCAAGTCAT
1 TGAACTATTCAAAAATTTTAATTCAAGTCAT
99922057 T
1 T
99922058 CAGCTATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (31 bp):
TGAACTATTCAAAAATTTTAATTCAAGTCAT
Found at i:99923807 original size:17 final size:17
Alignment explanation
Indices: 99923785--99923835 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
99923775 TATAATTTTT
*
99923785 TTAAAATAATTAAAAAA
1 TTAAAATTATTAAAAAA
*
99923802 TTAAAATTA-TAGAAAA
1 TTAAAATTATTAAAAAA
99923818 TATAATAATTATTAAAAA
1 T-TAA-AATTATTAAAAA
99923836 TAATTAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 7 0.25
17 11 0.39
18 5 0.18
19 5 0.18
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
TTAAAATTATTAAAAAA
Found at i:99923837 original size:18 final size:17
Alignment explanation
Indices: 99923789--99923837 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
99923779 ATTTTTTTAA
99923789 AATAATTA-AAAAAT-T
1 AATAATTATAAAAATAT
99923804 AA-AATTATAGAAAATAT
1 AATAATTATA-AAAATAT
99923821 AATAATTATTAAAAATA
1 AATAATTA-TAAAAATA
99923838 ATTAAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.17
15 3 0.10
16 5 0.17
17 3 0.10
18 11 0.38
19 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AATAATTATAAAAATAT
Found at i:99926845 original size:25 final size:25
Alignment explanation
Indices: 99926817--99926927 Score: 114
Period size: 25 Copynumber: 4.4 Consensus size: 25
99926807 ATAGCTTTCT
* * **
99926817 TGAGCTTCTCAATACTTGGCTCTTA
1 TGAGCTTCTCGATACTTAGCTCACA
* * * *
99926842 TGAGATTCCCGATATTTGGCTCACA
1 TGAGCTTCTCGATACTTAGCTCACA
* *
99926867 AGAGCTTCTCGCTACTTAGCTCACA
1 TGAGCTTCTCGATACTTAGCTCACA
* *
99926892 TGAGCTTCCCGTTACTTAGCTCACA
1 TGAGCTTCTCGATACTTAGCTCACA
99926917 TGAGCTTCTCG
1 TGAGCTTCTCG
99926928 TTACATGACT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (25 bp):
TGAGCTTCTCGATACTTAGCTCACA
Found at i:99926895 original size:50 final size:50
Alignment explanation
Indices: 99926818--99926927 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
99926808 TAGCTTTCTT
* * ** * *
99926818 GAGCTTCTCAATACTTGGCTCTTATGAGATTCCCGATATTTGGCTCACAA
1 GAGCTTCTCGATACTTAGCTCACATGAGATTCCCGATACTTAGCTCACAA
* * * *
99926868 GAGCTTCTCGCTACTTAGCTCACATGAGCTTCCCGTTACTTAGCTCACAT
1 GAGCTTCTCGATACTTAGCTCACATGAGATTCCCGATACTTAGCTCACAA
99926918 GAGCTTCTCG
1 GAGCTTCTCG
99926928 TTACATGACT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (50 bp):
GAGCTTCTCGATACTTAGCTCACATGAGATTCCCGATACTTAGCTCACAA
Found at i:99926929 original size:25 final size:25
Alignment explanation
Indices: 99926860--99926931 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
99926850 CCGATATTTG
* *
99926860 GCTCACAAGAGCTTCTCGCTACTTA
1 GCTCACATGAGCTTCTCGTTACTTA
*
99926885 GCTCACATGAGCTTCCCGTTACTTA
1 GCTCACATGAGCTTCTCGTTACTTA
99926910 GCTCACATGAGCTTCTCGTTAC
1 GCTCACATGAGCTTCTCGTTAC
99926932 ATGACTTGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.21, C:0.32, G:0.17, T:0.31
Consensus pattern (25 bp):
GCTCACATGAGCTTCTCGTTACTTA
Found at i:99927380 original size:29 final size:29
Alignment explanation
Indices: 99927341--99927398 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
99927331 ATTTCCTTGT
99927341 TATACGAACTTACTACGATTAAATGCTTA
1 TATACGAACTTACTACGATTAAATGCTTA
*
99927370 TATACGAACTTACTATGATTAAATGCTTA
1 TATACGAACTTACTACGATTAAATGCTTA
99927399 CTCTGTGTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (29 bp):
TATACGAACTTACTACGATTAAATGCTTA
Found at i:99933033 original size:27 final size:27
Alignment explanation
Indices: 99932995--99933046 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
99932985 TGCTCTGTTA
*
99932995 GGGAGCTATAAAAACTTATAAACCTTG
1 GGGACCTATAAAAACTTATAAACCTTG
99933022 GGGACCTATAAAAACTTATAAACCT
1 GGGACCTATAAAAACTTATAAACCT
99933047 CTATTTGGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (27 bp):
GGGACCTATAAAAACTTATAAACCTTG
Found at i:99939192 original size:348 final size:346
Alignment explanation
Indices: 99938557--99939240 Score: 1224
Period size: 348 Copynumber: 2.0 Consensus size: 346
99938547 TTCTAAGAAC
*
99938557 CTTCCAATGAAGTTACCCAGTTGTCATGCTATTCCTTCTGACATGGAACCAATGGGAAAATTGTG
1 CTTCCAATGAAGTTACCCAGTTGTCATGCCATTCCTTCTGACATGGAACCAATGGGAAAATTGTG
* *
99938622 AATTTGTACCCTTCAAGGATACTTGAGTTGGGTTTTCTCCTTTCTCCAATTAGTGGAAAAGAATT
66 AATTTGTACCCTTCAAGGATACTTGAGTTGGGTCTTCTCCTTTCTCCAATTAATGGAAAAGAATT
99938687 AAATGTTTATTAAAGAACCATGGCATTCCTTCCATTACCCTCATTAGGTCCAACTCATTATAAAA
131 AAATGTTTATTAAAGAACCATGGCATTCCTTCCATTACCCTCATTAGGTCCAACTCATTATAAAA
99938752 ACAAAAGAAGACTTTTTTCTCTTCAATTTTTGTTATGTAGACACATTCTATTGGGTGCCATAATT
196 ACAAAAGAAGACTTTTTTCTCTTCAATTTTTGTTATGTAGACACATTCTATTGGGTGCCATAATT
99938817 CAACAAGGACAGATCTCACAAATGGGAAGTGGATTGCACTATTTTTTAGGACTTCTCCTACCAAA
261 CAACAAGGACAGATCTCACAAATGGGAAGTGGATTGCACTATTTTTTAGGACTTCTCCTACCAAA
99938882 CACAAATTAAACACAAATTAA
326 CACAAATTAAACACAAATTAA
*
99938903 CTTCCAATGAAGTTACCCAGTTGTCATGCCATTCCTTCTGACATGGAACCAATGGGCAAATTGTG
1 CTTCCAATGAAGTTACCCAGTTGTCATGCCATTCCTTCTGACATGGAACCAATGGGAAAATTGTG
* * *
99938968 AATTTGTACCCAATTCAAGGATACTTGATTTGGGTCTTCTCCTTTCTCCAATTAATGGTAGAGAA
66 AATTTGTACCC--TTCAAGGATACTTGAGTTGGGTCTTCTCCTTTCTCCAATTAATGGAAAAGAA
* * *
99939033 TTCAATGTTTATTGAAGAACCATGGCATTCCTTCCATTACCCTCCTTAGGTCCAACTCATTATAA
129 TTAAATGTTTATTAAAGAACCATGGCATTCCTTCCATTACCCTCATTAGGTCCAACTCATTATAA
* *
99939098 AAACAAAAGAAGACTTTTTTGTCTTCAATTTTTGTTATGTAGACACGTTCTATTGGGTGCCATAA
194 AAACAAAAGAAGACTTTTTTCTCTTCAATTTTTGTTATGTAGACACATTCTATTGGGTGCCATAA
* *
99939163 TTCAACAAGGATAGATCTCACAAATGGGAAGTGGATTGCATTATTTTTTAGGACTTCTCCTACCA
259 TTCAACAAGGACAGATCTCACAAATGGGAAGTGGATTGCACTATTTTTTAGGACTTCTCCTACCA
99939228 AACACAAATTAAA
324 AACACAAATTAAA
99939241 TTCATCCCCG
Statistics
Matches: 322, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
346 74 0.23
348 248 0.77
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33
Consensus pattern (346 bp):
CTTCCAATGAAGTTACCCAGTTGTCATGCCATTCCTTCTGACATGGAACCAATGGGAAAATTGTG
AATTTGTACCCTTCAAGGATACTTGAGTTGGGTCTTCTCCTTTCTCCAATTAATGGAAAAGAATT
AAATGTTTATTAAAGAACCATGGCATTCCTTCCATTACCCTCATTAGGTCCAACTCATTATAAAA
ACAAAAGAAGACTTTTTTCTCTTCAATTTTTGTTATGTAGACACATTCTATTGGGTGCCATAATT
CAACAAGGACAGATCTCACAAATGGGAAGTGGATTGCACTATTTTTTAGGACTTCTCCTACCAAA
CACAAATTAAACACAAATTAA
Found at i:99942938 original size:82 final size:83
Alignment explanation
Indices: 99942787--99942939 Score: 209
Period size: 82 Copynumber: 1.9 Consensus size: 83
99942777 TATTTCTTCC
* * * *
99942787 CTCCTCAATACAACTCAAAACAATGGTATGCTTAAAGGGAATTTTGTTTGTTGGAGTGGGCTACA
1 CTCCTCAATACAACTCAAAACAATGGTATACCTAAAGGGAATTTTGTTTGTTGGAGTAGGCCACA
99942852 TTTAACAAACTCTATTCA
66 TTTAACAAACTCTATTCA
** * * * *
99942870 CTCCTCAATACAACTCAAAATGATGGTGTACCT-AAGGGACTTTTGTTTGTTGGGGTAGGCCATA
1 CTCCTCAATACAACTCAAAACAATGGTATACCTAAAGGGAATTTTGTTTGTTGGAGTAGGCCACA
99942934 TTTAAC
66 TTTAAC
99942940 GCATCTTTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
82 32 0.53
83 28 0.47
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (83 bp):
CTCCTCAATACAACTCAAAACAATGGTATACCTAAAGGGAATTTTGTTTGTTGGAGTAGGCCACA
TTTAACAAACTCTATTCA
Found at i:99949828 original size:41 final size:41
Alignment explanation
Indices: 99949731--99949891 Score: 200
Period size: 41 Copynumber: 4.0 Consensus size: 41
99949721 ATACTTGATA
* * * * *
99949731 TCTCGCACACTAAGTGCCGTACATAGTCGAAACCATTTCAAA
1 TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTC-AT
* *
99949773 T-T-GCACACTAAGTGCCATGCATAGTCGAAGTTATCTCAT
1 TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCAT
*
99949812 TCTCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCAT
1 TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCAT
* * *
99949853 TCTCTCACACTAAGTGCCATATATAGCCGAAGCTATCTC
1 TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTC
99949892 GAATCACACA
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.02
40 30 0.29
41 72 0.69
42 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (41 bp):
TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCAT
Found at i:99949922 original size:40 final size:40
Alignment explanation
Indices: 99949776--99949911 Score: 157
Period size: 41 Copynumber: 3.4 Consensus size: 40
99949766 TTTCAAATTG
** * * * *
99949776 CACACTAAGTGCCATGCATAGTCGAAGTTATCTCATTCTCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCA-TATCA
* * *
99949817 CACACTAAGTGCCATATATAGTCGAAGCTATCTCATTCTCT
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCA-TATCA
99949858 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGA-ATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTC-ATATCA
99949898 CACACTAAGTGCCA
1 CACACTAAGTGCCA
99949912 CAATTAGCCG
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
40 16 0.18
41 70 0.80
42 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCATATCA
Found at i:99950434 original size:21 final size:20
Alignment explanation
Indices: 99950408--99950447 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
99950398 ACTTGTTTAA
99950408 CTATCATCAACCATACAAAAT
1 CTATCATCAACCAT-CAAAAT
*
99950429 CTATCATCAATCATCAAAA
1 CTATCATCAACCATCAAAA
99950448 CTCATACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCATCAACCATCAAAAT
Found at i:99956340 original size:30 final size:30
Alignment explanation
Indices: 99956304--99956366 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
99956294 CAAGAATTTT
99956304 ACTTACCAATTTGACCAAATACATATATAA
1 ACTTACCAATTTGACCAAATACATATATAA
99956334 ACTTACCAATTTGACCAAATACATATATAA
1 ACTTACCAATTTGACCAAATACATATATAA
99956364 ACT
1 ACT
99956367 CATTTGTACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.30
Consensus pattern (30 bp):
ACTTACCAATTTGACCAAATACATATATAA
Found at i:99956652 original size:30 final size:30
Alignment explanation
Indices: 99956616--99956676 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
99956606 AGGCTGATGG
*
99956616 ATAGTGTGATGTAGCTTCGACTAGCTTCCA
1 ATAGTGTGATGTAGCTTCGACCAGCTTCCA
99956646 ATAGTGTGATGTAGCTTCGACCAGCTTCCA
1 ATAGTGTGATGTAGCTTCGACCAGCTTCCA
99956676 A
1 A
99956677 CCTTTACAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (30 bp):
ATAGTGTGATGTAGCTTCGACCAGCTTCCA
Found at i:99959857 original size:34 final size:34
Alignment explanation
Indices: 99959819--99959887 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
99959809 AATTTTGATA
99959819 TATTTTAATGTAAACGCATGATAATCATGAGTAT
1 TATTTTAATGTAAACGCATGATAATCATGAGTAT
*
99959853 TATTTTAATGTAAACTCATGATAATCATGAGTAT
1 TATTTTAATGTAAACGCATGATAATCATGAGTAT
99959887 T
1 T
99959888 GAATTGAGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.41
Consensus pattern (34 bp):
TATTTTAATGTAAACGCATGATAATCATGAGTAT
Found at i:99974016 original size:10 final size:10
Alignment explanation
Indices: 99973986--99974035 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
99973976 TAAAATTCTA
99973986 AAAGATAAAT
1 AAAGATAAAT
*
99973996 ACAA-ATCAAT
1 A-AAGATAAAT
99974006 AAAGATAAAT
1 AAAGATAAAT
99974016 AAAGATAAAT
1 AAAGATAAAT
99974026 GAAA-ATAAAT
1 -AAAGATAAAT
99974036 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.04, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:99974648 original size:13 final size:12
Alignment explanation
Indices: 99974622--99974654 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
99974612 TATTAATATG
99974622 TCTTTTTTTTTC
1 TCTTTTTTTTTC
*
99974634 T-TTTCTTTTTC
1 TCTTTTTTTTTC
99974645 TCTTTTTTTT
1 TCTTTTTTTT
99974655 AATAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TCTTTTTTTTTC
Found at i:99974840 original size:96 final size:95
Alignment explanation
Indices: 99974674--99974858 Score: 307
Period size: 96 Copynumber: 1.9 Consensus size: 95
99974664 TTAATTTTAT
* * *
99974674 TAATTTTTTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACC
1 TAATTTTTTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACC
*
99974739 CCACCCCGGTTACTTAGCCCAACATACTCC
66 CCACCCCGGTTACTCAGCCCAACATACTCC
*
99974769 TAATTTTTATTTTTCTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCAC
1 TAATTTTT-TTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCAC
*
99974834 CCCACCCTGGTTACTCAGCCCAACA
65 CCCACCCCGGTTACTCAGCCCAACA
99974859 CATTCTTAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
95 8 0.10
96 75 0.90
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (95 bp):
TAATTTTTTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACC
CCACCCCGGTTACTCAGCCCAACATACTCC
Found at i:99975606 original size:15 final size:15
Alignment explanation
Indices: 99975586--99975673 Score: 64
Period size: 15 Copynumber: 5.9 Consensus size: 15
99975576 TTAATATCTG
99975586 AAAATAATAAATAAT
1 AAAATAATAAATAAT
*
99975601 AAAATAAT-AAGAA-
1 AAAATAATAAATAAT
99975614 AAAATAAATAAA-AAT
1 AAAAT-AATAAATAAT
99975629 AAAATAAATTAAACTAA-
1 AAAAT-AA-TAAA-TAAT
99975646 AATAA-AATAAA-AAT
1 AA-AATAATAAATAAT
99975660 AAAAATAA-AAATAA
1 -AAAATAATAAATAA
99975674 AAATTGGGTT
Statistics
Matches: 61, Mismatches: 1, Indels: 22
0.73 0.01 0.26
Matches are distributed among these distances:
13 7 0.11
14 14 0.23
15 28 0.46
16 6 0.10
17 2 0.03
18 4 0.07
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.20
Consensus pattern (15 bp):
AAAATAATAAATAAT
Done.